Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.
Official PyTorch implementation of "Learning Entropy Production via Neural Networks" (PRL 2020).
Code developed for a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Python scripts for the application of dissipation-corrected targeted molecular dynamics analysis.
The code for quantifying cell differentiation&reprogramming landscape-flux from single-cell transcriptomics
Wiki of a research project at the University of Cambridge, supervised by Robert Jack, and at the Université de Paris, supervised by Frédéric van Wijland.
Official PyTorch implementation of "Deep reinforcement learning for feedback control in a collective flashing ratchet" (PRR 2021).
Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Dev repo for PoWR refactoring
Official PyTorch implementation of "Estimating entropy production in a stochastic system with odd-parity variables".
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