Concepts

Concepts

Concepts we want to teach in the course are listed below.

Different ways of parallelisation

• Thread Model
• Message Passing Model

Implementation: python

Profiling (measuring performance)

• cpu usage
• memory usage
• disk I/O

HPC architecture

• single server
• HPC cluster (Abel for the course)
• cloud (or Amazon/Azure/Google cloud etc) cPouta for the course

Accessing HPC infrastructure

• interactive (ssh)
• queueing system (SLURM and HTCondor)

Workflows

• sdag, arrayrun (SLURM)
• Galaxy workflow