From 58ab9c4292de9d0724de0543a9812e3b2fb92fe8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Matthias=20M=C3=BCller-Schrader?=
 <mueller-schrader@biomed.ee.ethz.ch>
Date: Fri, 8 Apr 2022 20:06:02 +0200
Subject: [PATCH] Have auxTools which are always added and marked as dependency

---
 misc/tapas_check_for_new_release.m |  2 +-
 misc/tapas_get_toolbox_infos.m     |  4 +++-
 misc/tapas_init_toolboxes.m        | 13 ++++++++++---
 3 files changed, 14 insertions(+), 5 deletions(-)

diff --git a/misc/tapas_check_for_new_release.m b/misc/tapas_check_for_new_release.m
index b170f480..60f82a70 100644
--- a/misc/tapas_check_for_new_release.m
+++ b/misc/tapas_check_for_new_release.m
@@ -36,7 +36,7 @@
 
     if verbose % Show info
         if ~haveNewerRelease
-            fprintf(1, 'Your TAPAS version is up-to-date .\n\n');
+            fprintf(1, 'Your TAPAS version is up-to-date.\n\n');
         else
             fprintf(1, ['There is a new TAPAS release available (installed %s /'...
                 +'newest %s)!\n\n'],offline_version,online_version);
diff --git a/misc/tapas_get_toolbox_infos.m b/misc/tapas_get_toolbox_infos.m
index f6dd5b48..497d8b37 100644
--- a/misc/tapas_get_toolbox_infos.m
+++ b/misc/tapas_get_toolbox_infos.m
@@ -1,4 +1,4 @@
-function infos = tapas_get_toolbox_infos()
+function [infos, auxillary_toolboxes] = tapas_get_toolbox_infos()
 	% Function storing information regarding toolboxes.
 	%
 	% Each toolbox is represented by a field with its lower-case-name.
@@ -58,6 +58,8 @@
 	infos.external.diagnose_files = '';
 
     infos = tapas_default_toolbox_info(infos,'tools'); % Want to have that?
+    
+    auxillary_toolboxes = {'external','tools'}; % Just inform - let init decide what to do
 end
 
 
diff --git a/misc/tapas_init_toolboxes.m b/misc/tapas_init_toolboxes.m
index 434e4a01..cefe72d5 100644
--- a/misc/tapas_init_toolboxes.m
+++ b/misc/tapas_init_toolboxes.m
@@ -41,14 +41,14 @@ function tapas_init_toolboxes(toolboxes,tdir,doShowMessages)
 % In the infos struct, we have all information about our toolboxes (which ones 
 % we have, what other TAPAS toolboxes they depend on and whether they have a 
 % init function):
-infos = tapas_get_toolbox_infos();
+[infos,aux_tools] = tapas_get_toolbox_infos();
 
 % Strategy: Use fieldnames of struct for list of toolboxes. Have boolean array,
 % whether to add them. 
 toolbox_names = fieldnames(infos);
 if doInitAll % That's easy: Just add all.
 	doInit = ones(size(toolbox_names),'logical');
-	toolboxes = toolbox_names;
+	toolboxes = toolbox_names(~ismember(toolbox_names,aux_tools));
 else
 	doInit = zeros(size(toolbox_names),'logical');
 	for iTool = 1:numel(toolboxes) % These are to add (input argument)
@@ -66,6 +66,9 @@ function tapas_init_toolboxes(toolboxes,tdir,doShowMessages)
 end
 % Now that we know, which toolboxes (including dependencies) we want to add,
 % we can do that.
+doInit(ismember(toolbox_names,aux_tools)) = true; % Always add these.
+
+
 for iTool = 1:numel(toolbox_names) % Now we are iterating over all toolboxes.
 	if doInit(iTool) 
 		sTool = toolbox_names{iTool};
@@ -79,7 +82,11 @@ function tapas_init_toolboxes(toolboxes,tdir,doShowMessages)
                     str(end+1:80+17) = '~'; % 17 for <strong></strong>
                     fprintf(1,'%s\n',str);
                 else 
-                    fprintf(1,'===== Adding dependent toolbox %s =====\n',sTool);
+                    %fprintf(1,'===== Adding dependent toolbox %s =====\n',sTool);
+                    str = sprintf(['~~~~~~~~~~~~~~~~~~~~~~~~ ADDING DEPENDENCY ',...
+                        '%s ~~~~~~~~~~~~~~~~~~~~~~~~'],upper(sTool));
+                    str(end+1:80) = '~'; 
+                    fprintf(1,'%s\n',str);
                 end
             end
             % If no init function is specified, we add the "genpath(init_dir)".