diff --git a/bin/shovill b/bin/shovill index a821cd0..5d36799 100755 --- a/bin/shovill +++ b/bin/shovill @@ -147,7 +147,7 @@ unless ($gsize) { my($bp) = grep { m/Estimated genome size/i } read_lines($LOGFILE); # @@@ KMC @@@ - run_cmd("kmc -t$cpus -k$kmer -ci$minkc \Q$R1\E $tmpout/kmc $tmpout"); + run_cmd("kmc -sm -m$half_ram -t$cpus -k$kmer -ci$minkc \Q$R1\E $tmpout/kmc $tmpout"); unlink <$tmpout/kmc.*>; # No. of unique counted k-mers : 2054586 my($bp) = grep { m/unique counted k/i } read_lines($LOGFILE);