diff --git a/.travis/install_deps.sh b/.travis/install_deps.sh index 0f4f31e..36821a8 100755 --- a/.travis/install_deps.sh +++ b/.travis/install_deps.sh @@ -27,13 +27,13 @@ $UNTAR $BWA.tar.bz2 $MAKE -C $BWA PATH=$HERE/$BWA:$PATH -MASHVER=2.1.1 -MASH="mash-Linux64-v$MASHVER" -MASHTAR="$MASH.tar" -echo "* $MASH" -$WGET https://github.com/marbl/Mash/releases/download/v$MASHVER/$MASHTAR -$UNTAR $MASHTAR -PATH=$HERE/$MASH:$PATH +#MASHVER=2.1.1 +#MASH="mash-Linux64-v$MASHVER" +#MASHTAR="$MASH.tar" +#echo "* $MASH" +#$WGET https://github.com/marbl/Mash/releases/download/v$MASHVER/$MASHTAR +#$UNTAR $MASHTAR +#PATH=$HERE/$MASH:$PATH SEQTKVER=1.3 SEQTK=v$SEQTKVER.tar.gz @@ -60,12 +60,13 @@ $WGET https://github.com/voutcn/megahit/releases/download/v$MEGAHITVER/$MEGAHITT $UNTAR $MEGAHITTAR PATH=$HERE/$MEGAHIT:$PATH -#KMC=KMC3.linux.tar.gz -#echo "* $KMC" -#$WGET https://github.com/refresh-bio/KMC/releases/download/v3.0.0/$KMC -#tar xvf $KMC -#rm -fv kmc_dump kmc_tools -#PATH=$HERE:$PATH +KMCVER=3.1.1 +KMC=KMC${KMCVER}.linux.tar.gz +echo "* $KMC" +$WGET https://github.com/refresh-bio/KMC/releases/download/v$KMCVER/$KMC +tar xvf $KMC +rm -fv kmc_dump kmc_tools +PATH=$HERE:$PATH PILONVER=1.23 JAR=pilon-$PILONVER.jar @@ -80,7 +81,7 @@ cat "$PILONSH" PATH=$HERE/$PILON:$PATH # http://cab.spbu.ru/files/release3.12.0/SPAdes-3.12.0-Linux.tar.gz -SPADESVER=3.13.1 +SPADESVER=3.14.0 SPADES=SPAdes-$SPADESVER-Linux echo "* $SPADES" $WGET http://cab.spbu.ru/files/release$SPADESVER/$SPADES.tar.gz