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SRA download error #2

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ngutrinh opened this issue Mar 22, 2021 · 0 comments
Open

SRA download error #2

ngutrinh opened this issue Mar 22, 2021 · 0 comments

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@ngutrinh
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I follow the code to download SRA but it error no such directory, how to fix it, thank you?

for(i in 1:length(srr_id)){

  • get_srr(srr_id=srr_id[i], destdir=tempdir(), ascp=F,
  •       prefetch_workspace=NULL,ascp_path=NULL)
    
  • }
    --2021-03-22 16:21:24-- ftp://ftp-trace.ncbi.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR589/SRR5890520/SRR5890520.sra
    => ‘/tmp/RtmpSuqlD5/SRR5890520.sra’
    Resolving ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)... 165.112.9.229, 130.14.250.13, 2607:f220:41e:250::10, ...
    Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|165.112.9.229|:21... connected.
    Logging in as anonymous ... Logged in!
    ==> SYST ... done. ==> PWD ... done.
    ==> TYPE I ... done. ==> CWD (1) /sra/sra-instant/reads/ByRun/sra/SRR/SRR589/SRR5890520 ...
    No such directory ‘sra/sra-instant/reads/ByRun/sra/SRR/SRR589/SRR5890520’.

All SRA files are downloaded successfully. 2021-03-22 16:21:28

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