Print output when unable to parse JSON (#102)

* Print output when unable to parse JSON

* Apply automatic documentation changes

Co-authored-by: paulineribeyre <[email protected]>

Author: paulineribeyre

docs/_build/doctrees/environment.pickle

@@ -379,7 +379,11 @@ <h1>Source code for gen3.submission</h1><div class="highlight"><pre>
         <span class="n">output</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">api_url</span><span class="p">,</span> <span class="n">auth</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_auth_provider</span><span class="p">)</span><span class="o">.</span><span class="n">text</span>
         <span class="k">if</span> <span class="n">filename</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">fileformat</span> <span class="o">==</span> <span class="s2">&quot;json&quot;</span><span class="p">:</span>
-                <span class="n">output</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">output</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
+                <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+                    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Output: </span><span class="si">{</span><span class="n">output</span><span class="si">}</span><span class="se">\n</span><span class="s2">Unable to parse JSON: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+                    <span class="k">raise</span>
             <span class="k">return</span> <span class="n">output</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">__export_file</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">output</span><span class="p">)</span>
@@ -411,7 +415,11 @@ <h1>Source code for gen3.submission</h1><div class="highlight"><pre>
         <span class="n">output</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">api_url</span><span class="p">,</span> <span class="n">auth</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_auth_provider</span><span class="p">)</span><span class="o">.</span><span class="n">text</span>
         <span class="k">if</span> <span class="n">filename</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">fileformat</span> <span class="o">==</span> <span class="s2">&quot;json&quot;</span><span class="p">:</span>
-                <span class="n">output</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">output</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
+                <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+                    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Output: </span><span class="si">{</span><span class="n">output</span><span class="si">}</span><span class="se">\n</span><span class="s2">Unable to parse JSON: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+                    <span class="k">raise</span>
             <span class="k">return</span> <span class="n">output</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">__export_file</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">output</span><span class="p">)</span>