Merge pull request #13 from uc-cdis/submit_file

fixed res to json_res

Author: cgmeyer

gen3/submission.py

@@ -334,7 +334,9 @@ def submit_file(self, project_id, filename, chunk_size=30, row_offset=0):
             df = pd.read_csv(filename, header=0, sep="\t", dtype=str).fillna("")
         else:
             raise Gen3UserError("Please upload a file in CSV, TSV, or XLSX format.")
-        df.rename(columns = {c: c.lstrip('*') for c in df.columns}, inplace = True) # remove any leading asterisks in the DataFrame column names
+        df.rename(
+            columns={c: c.lstrip("*") for c in df.columns}, inplace=True
+        )  # remove any leading asterisks in the DataFrame column names
 
         # Check uniqueness of submitter_ids:
         if len(list(df.submitter_id)) != len(list(df.submitter_id.unique())):
@@ -411,14 +413,14 @@ def submit_file(self, project_id, filename, chunk_size=30, row_offset=0):
                 if "message" in json_res and "code" not in json_res:
                     print(
                         "\t No code in the API response for Chunk {}: {}".format(
-                            str(count), res.get("message")
+                            str(count), json_res.get("message")
                         )
                     )
-                    print("\t {}".format(str(res.get("transactional_errors"))))
+                    print("\t {}".format(str(json_res.get("transactional_errors"))))
                     results["responses"].append(
-                        "Error Chunk {}: {}".format(str(count), res.get("message"))
+                        "Error Chunk {}: {}".format(str(count), json_res.get("message"))
                     )
-                    results["other"].append(res.get("transactional_errors"))
+                    results["other"].append(json_res.get("transactional_errors"))
 
                 elif "code" not in json_res:
                     print("\t Unhandled API-response: {}".format(response))