Merge pull request #140 from uc-cdis/feat/brh_credentials

BMH-111

Author: tianj7

.secrets.baseline

@@ -3,7 +3,7 @@
     "files": "(docs\\/_build|poetry.lock)|^.secrets.baseline$",
     "lines": null
   },
-  "generated_at": "2022-07-01T15:56:05Z",
+  "generated_at": "2022-07-12T20:56:54Z",
   "plugins_used": [
     {
       "name": "AWSKeyDetector"

docs/_build/doctrees/auth.doctree

@@ -415,8 +415,8 @@ <h1>Source code for gen3.tools.indexing.index_manifest</h1><div class="highlight
 
 <span class="sd">            Example manifest_file:</span>
 <span class="sd">                guid, ..., columnA, columnB, ColumnC</span>
-<span class="sd">                   1, ...,   dataA,        ,</span>
-<span class="sd">                   2, ...,        ,   dataB,</span>
+<span class="sd">                    1, ...,   dataA,        ,</span>
+<span class="sd">                    2, ...,        ,   dataB,</span>
 
 <span class="sd">            Resulting metadata if force_metadata_columns_even_if_empty=True :</span>
 <span class="sd">                &quot;1&quot;: {</span>

docs/_build/doctrees/environment.pickle

@@ -97,13 +97,20 @@ <h1>Gen3 Auth Helper<a class="headerlink" href="#gen3-auth-helper" title="Permal
 
 <dl class="py method">
 <dt class="sig sig-object py" id="gen3.auth.Gen3Auth.get_access_token">
-<span class="sig-name descname"><span class="pre">get_access_token</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/gen3/auth.html#Gen3Auth.get_access_token"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.auth.Gen3Auth.get_access_token" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_access_token</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">endpoint</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gen3/auth.html#Gen3Auth.get_access_token"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.auth.Gen3Auth.get_access_token" title="Permalink to this definition">¶</a></dt>
 <dd><p>Get the access token - auto refresh if within 5 minutes of expiration</p>
 </dd></dl>
 
+<dl class="py method">
+<dt class="sig sig-object py" id="gen3.auth.Gen3Auth.get_access_token_from_wts">
+<span class="sig-name descname"><span class="pre">get_access_token_from_wts</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">endpoint</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gen3/auth.html#Gen3Auth.get_access_token_from_wts"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.auth.Gen3Auth.get_access_token_from_wts" title="Permalink to this definition">¶</a></dt>
+<dd><p>Try to fetch an access token for the given idp from the wts
+in the given namespace.  If idp is not set, then default to “local”</p>
+</dd></dl>
+
 <dl class="py method">
 <dt class="sig sig-object py" id="gen3.auth.Gen3Auth.refresh_access_token">
-<span class="sig-name descname"><span class="pre">refresh_access_token</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/gen3/auth.html#Gen3Auth.refresh_access_token"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.auth.Gen3Auth.refresh_access_token" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">refresh_access_token</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">endpoint</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gen3/auth.html#Gen3Auth.refresh_access_token"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.auth.Gen3Auth.refresh_access_token" title="Permalink to this definition">¶</a></dt>
 <dd><p>Get a new access token</p>
 </dd></dl>
 

docs/_build/doctrees/tools/indexing.doctree

@@ -328,6 +328,8 @@ <h2 id="G">G</h2>
 </li>
       </ul></li>
       <li><a href="auth.html#gen3.auth.Gen3Auth.get_access_token">get_access_token() (gen3.auth.Gen3Auth method)</a>
+</li>
+      <li><a href="auth.html#gen3.auth.Gen3Auth.get_access_token_from_wts">get_access_token_from_wts() (gen3.auth.Gen3Auth method)</a>
 </li>
       <li><a href="indexing.html#gen3.index.Gen3Index.get_all_records">get_all_records() (gen3.index.Gen3Index method)</a>
 </li>