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docker-SomaticSniper

SomaticSniper is a tool to identify somatic point mutations in whole genome sequencing data. It employs a Bayesian comparision of the genotype likelihoods in the tumor and normal samples. The UCLA-CDS's SomaticSniper image is located in the Boutros Lab Docker Hub repository.

Documentation

The main page of SomaticSniper can be found here. The github page of SomaticSniper can be found here.

Version

Tool Version
SomaticSniper 1.0.5.0

References

  1. David E. Larson, et al., SomaticSniper: identification of somatic point mutations in whole genome sequencing data, Bioinformatics, Volume 28, Issue 3, 1 February 2012, Pages 311–317.

License

Author: Caden Bugh, Mao Tian

docker-SomaticSniper is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license.

docker-SomaticSniper is used to detect somatic SNVs in sequencing data.

Copyright (C) 2021 University of California Los Angeles ("Boutros Lab") All rights reserved.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.