From fb0dfb95a790eb8f40707f6c7e9056870134d12c Mon Sep 17 00:00:00 2001 From: Tian Date: Tue, 19 Oct 2021 12:01:13 -0700 Subject: [PATCH 01/18] create initial commit of Dockerfile --- Dockerfile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index 8f58b10..df187ec 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,14 +1,14 @@ FROM blcdsdockerregistry/bl-base:1.0.0 AS builder # Use conda to install tools and dependencies into /usr/local -ARG TOOL_VERSION=X.X.X +ARG Strelka2_VERSION=2.9.10 RUN conda create -qy -p /usr/local \ -c bioconda \ -c conda-forge \ - tool_name==${TOOL_VERSION} + strelka==${Strelka2_VERSION} # Deploy the target tools into a base image FROM ubuntu:20.04 COPY --from=builder /usr/local /usr/local -LABEL maintainer="Your Name " \ No newline at end of file +LABEL maintainer="Mao Tian " From c36bb039810fcf0bc90222b6fd4de6e4d5a66e58 Mon Sep 17 00:00:00 2001 From: Tian Date: Tue, 19 Oct 2021 15:32:43 -0700 Subject: [PATCH 02/18] create initial commit for README.md and metadata.yaml --- README.md | 10 ++++------ metadata.yaml | 14 +++++++------- 2 files changed, 11 insertions(+), 13 deletions(-) diff --git a/README.md b/README.md index e700fb5..27be43d 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ -# docker-tool_name +# docker-Strelka2 Template Repository for the Boutros Lab Dockerfiles based on the bl-base image. -The bl-base image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/bl-base +The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 # Documentation Docker introduction [here](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Docker+Introduction) @@ -14,16 +14,14 @@ Docker image versioning standard [here](https://confluence.mednet.ucla.edu/displ # Version | Tool | Version | |------|---------| -|tool_name| X.X.X| -|tool_name_2|X.X.X| +|Strelka2| 2.9.10| --- ## References -1. Tool specific references can be listed here - +1. Kim, S., Scheffler, K., Halpern, A.L. et al. Strelka2: fast and accurate calling of germline and somatic variants. Nat Methods 15, 591–594 (2018). https://doi.org/10.1038/s41592-018-0051-x --- ## License diff --git a/metadata.yaml b/metadata.yaml index 9e9ec34..174cc74 100644 --- a/metadata.yaml +++ b/metadata.yaml @@ -1,10 +1,10 @@ --- Category: 'docker' -Description: 'Template Docker repository for tool_name' # Description of why the repository exists -Maintainers: ['YourName@mednet.ucla.edu'] # email address of maintainers -Contributors: ['Your Name'] # Full names of contributors +Description: 'Docker repository for Strelka2' # Description of why the repository exists +Maintainers: ['maotian@mednet.ucla.edu'] # email address of maintainers +Contributors: ['Mao Tian'] # Full names of contributors Languages: ['Dockerfile'] # programming languages used -Tools: ['tool_name'] # Name of the tool(s) used in the Dockerfile -Version: ['X.X.X'] # Tool version number -Purpose of tool: '' # Description of what this tool does -References: '' # is the tool/dependencies published, is there a confluence page +Tools: ['Strelka2'] # Name of the tool(s) used in the Dockerfile +Version: ['2.9.10'] # Tool version number +Purpose of tool: 'Strelka calls somatic and germline small variants from mapped sequencing reads' # Description of what this tool does +References: 'Kim, S., Scheffler, K., Halpern, A.L. et al. Strelka2: fast and accurate calling of germline and somatic variants. Nat Methods 15, 591–594 (2018). https://doi.org/10.1038/s41592-018-0051-x' # is the tool/dependencies published, is there a confluence page From ea3f89f47bb09cefa322c6e21124b5d7e8516075 Mon Sep 17 00:00:00 2001 From: Tian Date: Tue, 19 Oct 2021 15:37:56 -0700 Subject: [PATCH 03/18] update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 27be43d..7118a46 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ # docker-Strelka2 -Template Repository for the Boutros Lab Dockerfiles based on the bl-base image. +Strelka2 is a tool for fast and accurate calling of germline and somatic variants. The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 From a14d8902327b0ca897bb3be79029c92aa5886638 Mon Sep 17 00:00:00 2001 From: Tian Date: Tue, 19 Oct 2021 15:45:13 -0700 Subject: [PATCH 04/18] initial commit of PR template --- .github/PULL_REQUEST_TEMPLATE.md | 59 ++++++++++++++++++++++++++++++++ 1 file changed, 59 insertions(+) create mode 100644 .github/PULL_REQUEST_TEMPLATE.md diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 0000000..562f8fe --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,59 @@ +## Description + + + + +## Checklist + +### Formatting + +- [ ] I have read the [code review guidelines](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Code+Review+Guidelines) and the [code review best practice on GitHub check-list](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Code+Review+Best+Practice+on+GitHub+-+Check+List). + +- [ ] The name of the branch is meaningful and well formatted following the [standards](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Code+Review+Best+Practice+on+GitHub+-+Check+List), using [AD_username (or 5 letters of AD if AD is too long)-[brief_description_of_branch]. + +- [ ] I have set up or verified the branch protection rule following the [github standards](https://confluence.mednet.ucla.edu/pages/viewpage.action?spaceKey=BOUTROSLAB&title=GitHub+Standards#GitHubStandards-Branchprotectionrule) before opening this pull request. + +### File Updates + +- [ ] I have updated the version number/dependencies and added my name to the maintainer listing in the `Dockerfile`. + +- [ ] I have updated the version number/feature changes in the `README.md`. + + +- [ ] I have updated the version number and added my name to the contributors listing in the `metadata.yaml`. + +- [ ] I have added the changes included in this pull request to the `CHANGELOG.md` under the next release version or unreleased, and updated the date. + + +- [ ] I have drafted the new version release with any addidtions/changes and have linked the `CHANGELOG.md` in the release. + +### Tested + +- [ ] I have tested the Docker image with the `docker run` command as described below. + +### Version + + +- [ ] Upon successful testing and reviewer approval, I have pushed this Docker image to the `blcdsdockerregistry` on [Docker Hub](https://hub.docker.com). + +## Testing + +Test the Docker image with at least one A-mini sample. Verify the new Docker image works using: + +```docker run -u $(id -u):$(id -g) –w -v : --rm ``` + +My command: + +```Provide the command you ran here``` + + + +## Testing Results + +Closes # + +- Case 1 + - sample: + - input files: + - config: + - output: From 24eeaffe2043d5e7befb103767fb376b6ed7ea05 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Thu, 21 Oct 2021 22:53:39 -0700 Subject: [PATCH 05/18] Update CHANGELOG.md --- CHANGELOG.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3daf420..2b570dc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,8 +8,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm --- ## [Unreleased] -### Changed -- Changed something but it is not part of the last release. +### Added +- Create the docker repo: blcdsdockerregistry/strelka2:2.9.10. --- @@ -34,4 +34,4 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm - Fixed item 1. ### Security -- In case of vulnerabilities. \ No newline at end of file +- In case of vulnerabilities. From fb204c7ce9df148899673d4db0232f53aff378ee Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Mon, 25 Oct 2021 09:42:24 -0700 Subject: [PATCH 06/18] Update Dockerfile --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index df187ec..5cc1318 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,8 +1,8 @@ -FROM blcdsdockerregistry/bl-base:1.0.0 AS builder +FROM blcdsdockerregistry/bl-base:1.1.0 AS builder # Use conda to install tools and dependencies into /usr/local ARG Strelka2_VERSION=2.9.10 -RUN conda create -qy -p /usr/local \ +RUN mamba create -qy -p /usr/local \ -c bioconda \ -c conda-forge \ strelka==${Strelka2_VERSION} From bb229fa537dcdb12b4abfd0b35c771850b9e0aee Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Fri, 29 Oct 2021 11:43:19 -0700 Subject: [PATCH 07/18] Update CHANGELOG.md --- CHANGELOG.md | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 2b570dc..c9b1d69 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,12 +8,7 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm --- ## [Unreleased] -### Added -- Create the docker repo: blcdsdockerregistry/strelka2:2.9.10. ---- - -## [1.0.0] - YYYY-MM-DD ### Added - For new features. - Added item 1. @@ -35,3 +30,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ### Security - In case of vulnerabilities. + +--- + +## [2.9.10] - 2021-10-28 +### Added +- Create the docker repo: blcdsdockerregistry/strelka2:2.9.10. From 8b2dbcdebb3f48fc71afba8d93be3a55c30ba07b Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Fri, 29 Oct 2021 11:51:27 -0700 Subject: [PATCH 08/18] Update README.md --- README.md | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 7118a46..72ef620 100644 --- a/README.md +++ b/README.md @@ -4,19 +4,15 @@ Strelka2 is a tool for fast and accurate calling of germline and somatic variant The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 # Documentation -Docker introduction [here](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Docker+Introduction) - -Dockerfile Best Practices [here](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Dockerfile+Best+Practices) - -Docker image versioning standard [here](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/Docker+image+versioning+standardization) +The main github page of strelka2 can be found [here](https://github.com/Illumina/strelka). +The strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). # Version | Tool | Version | |------|---------| |Strelka2| 2.9.10| - --- ## References From b79979d1350cc48cebc8da32c8e80a4385632599 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Mon, 1 Nov 2021 14:49:20 -0700 Subject: [PATCH 09/18] Update README.md --- README.md | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 72ef620..4ac7d9e 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,10 @@ # docker-Strelka2 -Strelka2 is a tool for fast and accurate calling of germline and somatic variants. +Strelka2 is a tool for fast and accurate calling of germline and somatic variants. To execute Strelka2, a matched normal sample, a `normal.bam`, and a reference fasta are needed to distinguish both germline variation and sequencing artifacts. The output of Strelka2 includes variant predicions, `.vcf.gz` files, and statistics, `.tsv` files. For more input requirements and output file formats, please visit [Strelka2 user guide](https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md). The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 # Documentation -The main github page of strelka2 can be found [here](https://github.com/Illumina/strelka). - -The strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). +The main github page of strelka2 can be found [here](https://github.com/Illumina/strelka). The strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). # Version | Tool | Version | @@ -22,11 +20,11 @@ The strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/mast ## License -Author: Name1, Name2 +Author: Mao Tian, Caden Bugh. -[docker repo name] is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license. +Docker-Strelka2 is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license. - +Docker-Strelka2 is a tool for fast and accurate calling of germline and somatic variants Copyright (C) 2021 University of California Los Angeles ("Boutros Lab") All rights reserved. From 045abd9eca5995c2f1f929fe0d02564fcd138454 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Mon, 1 Nov 2021 14:52:45 -0700 Subject: [PATCH 10/18] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 4ac7d9e..52cd68b 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ Strelka2 is a tool for fast and accurate calling of germline and somatic variant The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 # Documentation -The main github page of strelka2 can be found [here](https://github.com/Illumina/strelka). The strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). +The main github page of strelka2 can be found [here](https://github.com/Illumina/strelka). For execution and run options, please consult the strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). # Version | Tool | Version | From 822b6fe69bee788d37eef77edfe818798a47d2ac Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Mon, 1 Nov 2021 16:01:48 -0700 Subject: [PATCH 11/18] Update CHANGELOG.md --- CHANGELOG.md | 18 ------------------ 1 file changed, 18 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c9b1d69..7d1199d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,26 +10,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ## [Unreleased] ### Added -- For new features. -- Added item 1. ### Changed -- For changes in existing functionality. -- Changed item 1. - -### Deprecated -- For soon-to-be removed features. - -### Removed -- For now removed features. -- Removed item 1. - -### Fixed -- For any bug fixes. -- Fixed item 1. - -### Security -- In case of vulnerabilities. --- From 735f5c10c7bff81821e8588e640a6f5f91666ad7 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Mon, 1 Nov 2021 16:02:02 -0700 Subject: [PATCH 12/18] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 7d1199d..6de6c4b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,6 +15,6 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm --- -## [2.9.10] - 2021-10-28 +## [2.9.10] - 2021-11-01 ### Added - Create the docker repo: blcdsdockerregistry/strelka2:2.9.10. From 1573d1c20b40238d999382c02087b95a4972fc61 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Tue, 2 Nov 2021 12:02:19 -0700 Subject: [PATCH 13/18] Update README.md --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 52cd68b..798e471 100644 --- a/README.md +++ b/README.md @@ -22,9 +22,9 @@ The main github page of strelka2 can be found [here](https://github.com/Illumina Author: Mao Tian, Caden Bugh. -Docker-Strelka2 is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license. +docker-Strelka2 is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license. -Docker-Strelka2 is a tool for fast and accurate calling of germline and somatic variants +docker-Strelka2 is a tool for fast and accurate calling of germline and somatic variants Copyright (C) 2021 University of California Los Angeles ("Boutros Lab") All rights reserved. From 233c4a6a4bfcc63957c7b86389492dfc1027de5e Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Tue, 2 Nov 2021 12:03:22 -0700 Subject: [PATCH 14/18] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 798e471..7d1bc7b 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ Strelka2 is a tool for fast and accurate calling of germline and somatic variant The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 # Documentation -The main github page of strelka2 can be found [here](https://github.com/Illumina/strelka). For execution and run options, please consult the strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). +The main github page of Strelka2 can be found [here](https://github.com/Illumina/strelka). For execution and run options, please consult the Strelka2 user manual is [here](https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md). # Version | Tool | Version | From be5601301a1b4eb46e777a456effdf022cefa90c Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Fri, 5 Nov 2021 11:53:30 -0700 Subject: [PATCH 15/18] Update PULL_REQUEST_TEMPLATE.md --- .github/PULL_REQUEST_TEMPLATE.md | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 562f8fe..e6b19d0 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -27,14 +27,13 @@ - [ ] I have drafted the new version release with any addidtions/changes and have linked the `CHANGELOG.md` in the release. -### Tested +### Docker Hub Auto Build Rules -- [ ] I have tested the Docker image with the `docker run` command as described below. +- [ ] I have created automated build rules following [this page](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/How+to+set+up+automated+builds+for+Docker+Hub) and I have not manually pushed this Docker image to the `blcdsdockerregistry` on [Docker Hub](https://hub.docker.com). -### Version +### Tested - -- [ ] Upon successful testing and reviewer approval, I have pushed this Docker image to the `blcdsdockerregistry` on [Docker Hub](https://hub.docker.com). +- [ ] I have tested the Docker image with the `docker run` command as described below. ## Testing From 5d2e0cd18e04666752cb0fa01aa6a7458e9dab2d Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Fri, 5 Nov 2021 12:44:44 -0700 Subject: [PATCH 16/18] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 7d1bc7b..e3d96ba 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ # docker-Strelka2 -Strelka2 is a tool for fast and accurate calling of germline and somatic variants. To execute Strelka2, a matched normal sample, a `normal.bam`, and a reference fasta are needed to distinguish both germline variation and sequencing artifacts. The output of Strelka2 includes variant predicions, `.vcf.gz` files, and statistics, `.tsv` files. For more input requirements and output file formats, please visit [Strelka2 user guide](https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md). +Strelka2 is a tool for fast and accurate calling of germline and somatic variants. To execute Strelka2, a matched normal sample, a `normal.bam`, and a reference fasta are needed to distinguish both germline variation and sequencing artifacts. The output of Strelka2 includes variant predictions, `.vcf.gz` files, and statistics, `.tsv` files. For more input requirements and output file formats, please visit [Strelka2 user guide](https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md). The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2 From 7d2298a93e6a977d13deed98519e8af5d584be93 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Fri, 5 Nov 2021 12:45:40 -0700 Subject: [PATCH 17/18] Update PULL_REQUEST_TEMPLATE.md --- .github/PULL_REQUEST_TEMPLATE.md | 2 -- 1 file changed, 2 deletions(-) diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index e6b19d0..25f5da1 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -35,8 +35,6 @@ - [ ] I have tested the Docker image with the `docker run` command as described below. -## Testing - Test the Docker image with at least one A-mini sample. Verify the new Docker image works using: ```docker run -u $(id -u):$(id -g) –w -v : --rm ``` From 25dd221a8125caa38b4c259a83079057a4b30500 Mon Sep 17 00:00:00 2001 From: Mao Tian <47042983+maotian06@users.noreply.github.com> Date: Sun, 7 Nov 2021 13:17:57 -0800 Subject: [PATCH 18/18] Update PULL_REQUEST_TEMPLATE.md --- .github/PULL_REQUEST_TEMPLATE.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 25f5da1..268bd97 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -31,7 +31,7 @@ - [ ] I have created automated build rules following [this page](https://confluence.mednet.ucla.edu/display/BOUTROSLAB/How+to+set+up+automated+builds+for+Docker+Hub) and I have not manually pushed this Docker image to the `blcdsdockerregistry` on [Docker Hub](https://hub.docker.com). -### Tested +### Docker Image Testing - [ ] I have tested the Docker image with the `docker run` command as described below.