From e7024fb21f4c59dbc2c86d89386310dcca8da213 Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Tue, 3 Dec 2024 09:48:23 +0000 Subject: [PATCH 01/12] Implement the GET sources call in the API --- src/matchbox/server/api.py | 29 ++++++++++++++++++++++++----- test/server/test_api.py | 16 ++++++++++++---- 2 files changed, 36 insertions(+), 9 deletions(-) diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index 80b84bb..6ee63d3 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -1,3 +1,4 @@ +import json from enum import StrEnum from typing import Annotated @@ -10,7 +11,6 @@ dotenv_path = find_dotenv(usecwd=True) load_dotenv(dotenv_path) - app = FastAPI( title="matchbox API", version="0.2.0", @@ -43,6 +43,14 @@ class CountResult(BaseModel): entities: dict[BackendEntityType, int] +class Source(BaseModel): + """Response model for sources""" + schema: str + table: str + id: str + +class Sources(BaseModel): + sources: list[Source] def get_backend() -> MatchboxDBAdapter: return BackendManager.get_backend() @@ -56,8 +64,8 @@ async def healthcheck() -> HealthCheck: @app.get("/testing/count") async def count_backend_items( - backend: Annotated[MatchboxDBAdapter, Depends(get_backend)], - entity: BackendEntityType | None = None, + backend: Annotated[MatchboxDBAdapter, Depends(get_backend)], + entity: BackendEntityType | None = None, ) -> CountResult: def get_count(e: BackendEntityType) -> int: return getattr(backend, str(e)).count() @@ -75,8 +83,19 @@ async def clear_backend(): @app.get("/sources") -async def list_sources(): - raise HTTPException(status_code=501, detail="Not implemented") +async def list_sources( + backend: Annotated[MatchboxDBAdapter, Depends(get_backend)] +) -> Sources: + datasets = backend.datasets.list() + result = [] + for dataset in datasets: + print(dataset) + result.append(Source( + table=getattr(dataset, "table"), + id= getattr(dataset, "id"), + schema= getattr(dataset, "schema"), + )) + return Sources(sources=result) @app.get("/sources/{hash}") diff --git a/test/server/test_api.py b/test/server/test_api.py index 4c87189..6364b2b 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -1,7 +1,10 @@ -from unittest.mock import Mock, patch +from unittest.mock import Mock, patch, MagicMock from fastapi.testclient import TestClient + +from build.lib.matchbox.server.base import ListableAndCountable from matchbox.server import app +from matchbox.server.postgresql.orm import Sources client = TestClient(app) @@ -48,9 +51,14 @@ def test_count_backend_item(self, get_backend): # response = client.post("/testing/clear") # assert response.status_code == 200 - # def test_list_sources(): - # response = client.get("/sources") - # assert response.status_code == 200 + @patch("matchbox.server.base.BackendManager.get_backend") + def test_list_sources(self, get_backend): + obj_mock = Sources(table="mock table", schema="mock_schema", id="mock_id") + mock_backend = Mock() + mock_backend.datasets.list = Mock(return_value=[obj_mock]) + get_backend.return_value = mock_backend + response = client.get("/sources") + assert response.status_code == 200 # def test_get_source(): # response = client.get("/sources/test_source") From ab5ecbc3d38ce5de990897c8bef52d8ab65a19d9 Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Tue, 3 Dec 2024 15:45:28 +0000 Subject: [PATCH 02/12] Implement the GET source call, given a hash as a hexdigest in the API --- src/matchbox/server/api.py | 31 ++++++++++++++++++++++++------- test/server/test_api.py | 23 ++++++++++++++++++++--- 2 files changed, 44 insertions(+), 10 deletions(-) diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index 6ee63d3..2fc69c9 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -1,4 +1,4 @@ -import json +from binascii import hexlify from enum import StrEnum from typing import Annotated @@ -6,7 +6,7 @@ from fastapi import Depends, FastAPI, HTTPException from pydantic import BaseModel -from matchbox.server.base import BackendManager, MatchboxDBAdapter +from matchbox.server.base import BackendManager, MatchboxDBAdapter, MatchboxModelAdapter dotenv_path = find_dotenv(usecwd=True) load_dotenv(dotenv_path) @@ -43,15 +43,19 @@ class CountResult(BaseModel): entities: dict[BackendEntityType, int] + class Source(BaseModel): """Response model for sources""" schema: str table: str id: str + model: bytes + class Sources(BaseModel): sources: list[Source] + def get_backend() -> MatchboxDBAdapter: return BackendManager.get_backend() @@ -92,15 +96,28 @@ async def list_sources( print(dataset) result.append(Source( table=getattr(dataset, "table"), - id= getattr(dataset, "id"), - schema= getattr(dataset, "schema"), - )) + id=getattr(dataset, "id"), + schema=getattr(dataset, "schema"), + model = hexlify(getattr(dataset, "model")) + )) return Sources(sources=result) @app.get("/sources/{hash}") -async def get_source(hash: str): - raise HTTPException(status_code=501, detail="Not implemented") +async def get_source(hash: str, + backend: Annotated[MatchboxDBAdapter, Depends(get_backend)] + )-> dict[str, Source] | str: + datasets = backend.datasets.list() + for dataset in datasets: + model = hexlify(getattr(dataset, "model")).decode('ascii') + if model == hash: + result_obj = Source( + table=getattr(dataset, "table"), + id=getattr(dataset, "id"), + schema=getattr(dataset, "schema"), + model = model) + return {"source": result_obj} + return "Source not found" @app.post("/sources/{hash}") diff --git a/test/server/test_api.py b/test/server/test_api.py index 6364b2b..8db760a 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -1,5 +1,7 @@ +import base64 from unittest.mock import Mock, patch, MagicMock +from binascii import hexlify from fastapi.testclient import TestClient from build.lib.matchbox.server.base import ListableAndCountable @@ -60,9 +62,24 @@ def test_list_sources(self, get_backend): response = client.get("/sources") assert response.status_code == 200 - # def test_get_source(): - # response = client.get("/sources/test_source") - # assert response.status_code == 200 + @patch("matchbox.server.base.BackendManager.get_backend") + def test_get_source(self, get_backend): + hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" + test = bytearray.fromhex(hash_hex) + obj_mock = Sources(table="mock_table", schema="mock_schema", id="mock_id", model=test) + mock_backend = Mock() + mock_backend.datasets.list = Mock(return_value=[obj_mock]) + get_backend.return_value = mock_backend + + response = client.get(f"/sources/{hash_hex}") + assert response.status_code == 200 + assert response.json() == {"source": { + "schema": "mock_schema", + "table": "mock_table", + "id": "mock_id", + "model": hash_hex + } + } # def test_add_source(): # response = client.post("/sources") From 3b1ced56a06a7b7791babe0827b9d84b0d1f029e Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Tue, 3 Dec 2024 16:01:20 +0000 Subject: [PATCH 03/12] Fix test for listing the sources --- src/matchbox/server/api.py | 4 ++-- test/server/test_api.py | 8 +++++--- 2 files changed, 7 insertions(+), 5 deletions(-) diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index 2fc69c9..4477b16 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -49,7 +49,7 @@ class Source(BaseModel): schema: str table: str id: str - model: bytes + model: str class Sources(BaseModel): @@ -98,7 +98,7 @@ async def list_sources( table=getattr(dataset, "table"), id=getattr(dataset, "id"), schema=getattr(dataset, "schema"), - model = hexlify(getattr(dataset, "model")) + model = hexlify(getattr(dataset, "model")).decode('ascii') )) return Sources(sources=result) diff --git a/test/server/test_api.py b/test/server/test_api.py index 8db760a..1855384 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -55,7 +55,9 @@ def test_count_backend_item(self, get_backend): @patch("matchbox.server.base.BackendManager.get_backend") def test_list_sources(self, get_backend): - obj_mock = Sources(table="mock table", schema="mock_schema", id="mock_id") + hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" + byte_arr = bytearray.fromhex(hash_hex) + obj_mock = Sources(table="mock table", schema="mock_schema", id="mock_id", model=byte_arr) mock_backend = Mock() mock_backend.datasets.list = Mock(return_value=[obj_mock]) get_backend.return_value = mock_backend @@ -65,8 +67,8 @@ def test_list_sources(self, get_backend): @patch("matchbox.server.base.BackendManager.get_backend") def test_get_source(self, get_backend): hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" - test = bytearray.fromhex(hash_hex) - obj_mock = Sources(table="mock_table", schema="mock_schema", id="mock_id", model=test) + byte_arr = bytearray.fromhex(hash_hex) + obj_mock = Sources(table="mock_table", schema="mock_schema", id="mock_id", model=byte_arr) mock_backend = Mock() mock_backend.datasets.list = Mock(return_value=[obj_mock]) get_backend.return_value = mock_backend From de474207dfc0deccc3716dcd4ab62b791883e5a4 Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Tue, 3 Dec 2024 16:05:21 +0000 Subject: [PATCH 04/12] Remove redundant imports --- test/server/test_api.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/test/server/test_api.py b/test/server/test_api.py index 1855384..bbf49c6 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -1,10 +1,7 @@ -import base64 -from unittest.mock import Mock, patch, MagicMock -from binascii import hexlify +from unittest.mock import Mock, patch, MagicMock from fastapi.testclient import TestClient -from build.lib.matchbox.server.base import ListableAndCountable from matchbox.server import app from matchbox.server.postgresql.orm import Sources From 9c5fde0ccc8c9a6bb5749c8bf24a61ea644d2ebc Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Tue, 3 Dec 2024 16:38:07 +0000 Subject: [PATCH 05/12] Remove redundant imports --- test/server/test_api.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/test/server/test_api.py b/test/server/test_api.py index bbf49c6..329195c 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -1,4 +1,3 @@ - from unittest.mock import Mock, patch, MagicMock from fastapi.testclient import TestClient @@ -77,7 +76,7 @@ def test_get_source(self, get_backend): "table": "mock_table", "id": "mock_id", "model": hash_hex - } + } } # def test_add_source(): From b4ab94926491cc8ef055fc05de411207e6dba1ca Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Thu, 5 Dec 2024 18:09:23 +0000 Subject: [PATCH 06/12] Enable parquet file uploads to S3 through the POST endpoint --- src/matchbox/server/api.py | 33 +++++++++++-------- .../server/postgresql/utils/aws_s3_client.py | 24 ++++++++++++++ 2 files changed, 43 insertions(+), 14 deletions(-) create mode 100644 src/matchbox/server/postgresql/utils/aws_s3_client.py diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index 4477b16..961e65f 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -1,12 +1,12 @@ from binascii import hexlify from enum import StrEnum -from typing import Annotated +from typing import Annotated, Optional from dotenv import find_dotenv, load_dotenv -from fastapi import Depends, FastAPI, HTTPException +from fastapi import Depends, FastAPI, HTTPException, File, UploadFile, Form from pydantic import BaseModel - -from matchbox.server.base import BackendManager, MatchboxDBAdapter, MatchboxModelAdapter +from matchbox.server.postgresql.utils.aws_s3_client import upload_to_s3 +from matchbox.server.base import BackendManager, MatchboxDBAdapter dotenv_path = find_dotenv(usecwd=True) load_dotenv(dotenv_path) @@ -44,16 +44,17 @@ class CountResult(BaseModel): entities: dict[BackendEntityType, int] -class Source(BaseModel): - """Response model for sources""" +class SourceItem(BaseModel): + """Response model for source""" schema: str table: str id: str - model: str + model: Optional[str] = None class Sources(BaseModel): - sources: list[Source] + """Response model for sources""" + sources: list[SourceItem] def get_backend() -> MatchboxDBAdapter: @@ -94,7 +95,7 @@ async def list_sources( result = [] for dataset in datasets: print(dataset) - result.append(Source( + result.append(SourceItem( table=getattr(dataset, "table"), id=getattr(dataset, "id"), schema=getattr(dataset, "schema"), @@ -106,12 +107,12 @@ async def list_sources( @app.get("/sources/{hash}") async def get_source(hash: str, backend: Annotated[MatchboxDBAdapter, Depends(get_backend)] - )-> dict[str, Source] | str: + )-> dict[str, SourceItem] | str: datasets = backend.datasets.list() for dataset in datasets: model = hexlify(getattr(dataset, "model")).decode('ascii') if model == hash: - result_obj = Source( + result_obj = SourceItem( table=getattr(dataset, "table"), id=getattr(dataset, "id"), schema=getattr(dataset, "schema"), @@ -120,9 +121,13 @@ async def get_source(hash: str, return "Source not found" -@app.post("/sources/{hash}") -async def add_source(hash: str): - raise HTTPException(status_code=501, detail="Not implemented") +@app.post("/sources/uploadFile") +async def add_source_to_s3(file: UploadFile, bucket_name: str = Form(...), object_name: str = Form(...)): + is_file_uploaded = upload_to_s3(file.file, bucket_name, object_name) + if is_file_uploaded: + return "File was successfully uplaoded" + return "File could not be uplaoded" + @app.get("/models") diff --git a/src/matchbox/server/postgresql/utils/aws_s3_client.py b/src/matchbox/server/postgresql/utils/aws_s3_client.py new file mode 100644 index 0000000..aaab43a --- /dev/null +++ b/src/matchbox/server/postgresql/utils/aws_s3_client.py @@ -0,0 +1,24 @@ +import boto3 +from botocore.exceptions import NoCredentialsError, PartialCredentialsError + +def upload_to_s3(file, bucket_name, object_name=None): + """ + Upload a file to an S3 bucket. + + :param file: File to upload + :param bucket_name: Target S3 bucket + :param object_name: S3 object name. If not specified, file_name is used + :return: True if the file was uploaded, else False + """ + # Initialize the S3 client + s3_client = boto3.client('s3') + try: + # Upload the file + s3_client.upload_fileobj(file, bucket_name, object_name) + return True + except NoCredentialsError: + return False + except PartialCredentialsError: + return False + + From 0cf1d7b830e43c143bea5ff338a9429a2f08d9dd Mon Sep 17 00:00:00 2001 From: monikasolanki Date: Thu, 5 Dec 2024 18:11:37 +0000 Subject: [PATCH 07/12] Move the AWS S3 client outside the postgresql folder --- src/matchbox/server/api.py | 4 ++-- src/matchbox/server/utils/__init__.py | 0 src/matchbox/server/{postgresql => }/utils/aws_s3_client.py | 0 3 files changed, 2 insertions(+), 2 deletions(-) create mode 100644 src/matchbox/server/utils/__init__.py rename src/matchbox/server/{postgresql => }/utils/aws_s3_client.py (100%) diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index 961e65f..6c9bc7c 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -3,9 +3,9 @@ from typing import Annotated, Optional from dotenv import find_dotenv, load_dotenv -from fastapi import Depends, FastAPI, HTTPException, File, UploadFile, Form +from fastapi import Depends, FastAPI, HTTPException, UploadFile, Form from pydantic import BaseModel -from matchbox.server.postgresql.utils.aws_s3_client import upload_to_s3 +from matchbox.server.utils.aws_s3_client import upload_to_s3 from matchbox.server.base import BackendManager, MatchboxDBAdapter dotenv_path = find_dotenv(usecwd=True) diff --git a/src/matchbox/server/utils/__init__.py b/src/matchbox/server/utils/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/src/matchbox/server/postgresql/utils/aws_s3_client.py b/src/matchbox/server/utils/aws_s3_client.py similarity index 100% rename from src/matchbox/server/postgresql/utils/aws_s3_client.py rename to src/matchbox/server/utils/aws_s3_client.py From f054b2fbe1c19a4be194bdf73904b56c5d4e8e6b Mon Sep 17 00:00:00 2001 From: Will Langdale Date: Thu, 12 Dec 2024 14:39:30 +0000 Subject: [PATCH 08/12] Ran ruff format --- src/matchbox/server/api.py | 49 ++++++++++++---------- src/matchbox/server/utils/aws_s3_client.py | 5 +-- test/server/test_api.py | 25 ++++++----- 3 files changed, 45 insertions(+), 34 deletions(-) diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index 6c9bc7c..f61275a 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -3,10 +3,11 @@ from typing import Annotated, Optional from dotenv import find_dotenv, load_dotenv -from fastapi import Depends, FastAPI, HTTPException, UploadFile, Form +from fastapi import Depends, FastAPI, Form, HTTPException, UploadFile from pydantic import BaseModel -from matchbox.server.utils.aws_s3_client import upload_to_s3 + from matchbox.server.base import BackendManager, MatchboxDBAdapter +from matchbox.server.utils.aws_s3_client import upload_to_s3 dotenv_path = find_dotenv(usecwd=True) load_dotenv(dotenv_path) @@ -46,6 +47,7 @@ class CountResult(BaseModel): class SourceItem(BaseModel): """Response model for source""" + schema: str table: str id: str @@ -54,6 +56,7 @@ class SourceItem(BaseModel): class Sources(BaseModel): """Response model for sources""" + sources: list[SourceItem] @@ -69,8 +72,8 @@ async def healthcheck() -> HealthCheck: @app.get("/testing/count") async def count_backend_items( - backend: Annotated[MatchboxDBAdapter, Depends(get_backend)], - entity: BackendEntityType | None = None, + backend: Annotated[MatchboxDBAdapter, Depends(get_backend)], + entity: BackendEntityType | None = None, ) -> CountResult: def get_count(e: BackendEntityType) -> int: return getattr(backend, str(e)).count() @@ -89,47 +92,51 @@ async def clear_backend(): @app.get("/sources") async def list_sources( - backend: Annotated[MatchboxDBAdapter, Depends(get_backend)] + backend: Annotated[MatchboxDBAdapter, Depends(get_backend)], ) -> Sources: datasets = backend.datasets.list() result = [] for dataset in datasets: print(dataset) - result.append(SourceItem( - table=getattr(dataset, "table"), - id=getattr(dataset, "id"), - schema=getattr(dataset, "schema"), - model = hexlify(getattr(dataset, "model")).decode('ascii') - )) + result.append( + SourceItem( + table=dataset.table, + id=dataset.id, + schema=dataset.schema, + model=hexlify(dataset.model).decode("ascii"), + ) + ) return Sources(sources=result) @app.get("/sources/{hash}") -async def get_source(hash: str, - backend: Annotated[MatchboxDBAdapter, Depends(get_backend)] - )-> dict[str, SourceItem] | str: +async def get_source( + hash: str, backend: Annotated[MatchboxDBAdapter, Depends(get_backend)] +) -> dict[str, SourceItem] | str: datasets = backend.datasets.list() for dataset in datasets: - model = hexlify(getattr(dataset, "model")).decode('ascii') + model = hexlify(dataset.model).decode("ascii") if model == hash: result_obj = SourceItem( - table=getattr(dataset, "table"), - id=getattr(dataset, "id"), - schema=getattr(dataset, "schema"), - model = model) + table=dataset.table, + id=dataset.id, + schema=dataset.schema, + model=model, + ) return {"source": result_obj} return "Source not found" @app.post("/sources/uploadFile") -async def add_source_to_s3(file: UploadFile, bucket_name: str = Form(...), object_name: str = Form(...)): +async def add_source_to_s3( + file: UploadFile, bucket_name: str = Form(...), object_name: str = Form(...) +): is_file_uploaded = upload_to_s3(file.file, bucket_name, object_name) if is_file_uploaded: return "File was successfully uplaoded" return "File could not be uplaoded" - @app.get("/models") async def list_models(): raise HTTPException(status_code=501, detail="Not implemented") diff --git a/src/matchbox/server/utils/aws_s3_client.py b/src/matchbox/server/utils/aws_s3_client.py index aaab43a..c941ea8 100644 --- a/src/matchbox/server/utils/aws_s3_client.py +++ b/src/matchbox/server/utils/aws_s3_client.py @@ -1,6 +1,7 @@ import boto3 from botocore.exceptions import NoCredentialsError, PartialCredentialsError + def upload_to_s3(file, bucket_name, object_name=None): """ Upload a file to an S3 bucket. @@ -11,7 +12,7 @@ def upload_to_s3(file, bucket_name, object_name=None): :return: True if the file was uploaded, else False """ # Initialize the S3 client - s3_client = boto3.client('s3') + s3_client = boto3.client("s3") try: # Upload the file s3_client.upload_fileobj(file, bucket_name, object_name) @@ -20,5 +21,3 @@ def upload_to_s3(file, bucket_name, object_name=None): return False except PartialCredentialsError: return False - - diff --git a/test/server/test_api.py b/test/server/test_api.py index 329195c..f4d59b4 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -1,6 +1,6 @@ -from unittest.mock import Mock, patch, MagicMock -from fastapi.testclient import TestClient +from unittest.mock import Mock, patch +from fastapi.testclient import TestClient from matchbox.server import app from matchbox.server.postgresql.orm import Sources @@ -53,7 +53,9 @@ def test_count_backend_item(self, get_backend): def test_list_sources(self, get_backend): hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" byte_arr = bytearray.fromhex(hash_hex) - obj_mock = Sources(table="mock table", schema="mock_schema", id="mock_id", model=byte_arr) + obj_mock = Sources( + table="mock table", schema="mock_schema", id="mock_id", model=byte_arr + ) mock_backend = Mock() mock_backend.datasets.list = Mock(return_value=[obj_mock]) get_backend.return_value = mock_backend @@ -64,19 +66,22 @@ def test_list_sources(self, get_backend): def test_get_source(self, get_backend): hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" byte_arr = bytearray.fromhex(hash_hex) - obj_mock = Sources(table="mock_table", schema="mock_schema", id="mock_id", model=byte_arr) + obj_mock = Sources( + table="mock_table", schema="mock_schema", id="mock_id", model=byte_arr + ) mock_backend = Mock() mock_backend.datasets.list = Mock(return_value=[obj_mock]) get_backend.return_value = mock_backend response = client.get(f"/sources/{hash_hex}") assert response.status_code == 200 - assert response.json() == {"source": { - "schema": "mock_schema", - "table": "mock_table", - "id": "mock_id", - "model": hash_hex - } + assert response.json() == { + "source": { + "schema": "mock_schema", + "table": "mock_table", + "id": "mock_id", + "model": hash_hex, + } } # def test_add_source(): From 2d00496753b25d1280024dc1558d0a5b884d6d7f Mon Sep 17 00:00:00 2001 From: Will Langdale Date: Thu, 12 Dec 2024 14:48:49 +0000 Subject: [PATCH 09/12] Tidied up s3 function and boto3 dependency --- pyproject.toml | 1 + .../server/utils/{aws_s3_client.py => s3.py} | 19 ++++--- uv.lock | 51 +++++++++++++++++++ 3 files changed, 64 insertions(+), 7 deletions(-) rename src/matchbox/server/utils/{aws_s3_client.py => s3.py} (50%) diff --git a/pyproject.toml b/pyproject.toml index 08063a3..eb2d327 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ dependencies = [ [project.optional-dependencies] server = [ + "boto3>=1.35.79", "fastapi[standard]>=0.115.0,<0.116.0", "pg-bulk-ingest>=0.0.54", "tomli>=2.0.1", diff --git a/src/matchbox/server/utils/aws_s3_client.py b/src/matchbox/server/utils/s3.py similarity index 50% rename from src/matchbox/server/utils/aws_s3_client.py rename to src/matchbox/server/utils/s3.py index c941ea8..4a27249 100644 --- a/src/matchbox/server/utils/aws_s3_client.py +++ b/src/matchbox/server/utils/s3.py @@ -1,20 +1,25 @@ +from typing import BinaryIO + import boto3 from botocore.exceptions import NoCredentialsError, PartialCredentialsError -def upload_to_s3(file, bucket_name, object_name=None): +def upload_to_s3( + file: BinaryIO, bucket_name: str, object_name: str | None = None +) -> bool: """ Upload a file to an S3 bucket. - :param file: File to upload - :param bucket_name: Target S3 bucket - :param object_name: S3 object name. If not specified, file_name is used - :return: True if the file was uploaded, else False + Args: + file (BinaryIO): File to upload. + bucket_name (str): Target S3 bucket. + object_name (str): S3 object name. If not specified, file_name is used. + + Returns: + bool: True if the file was uploaded, else False. 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src/matchbox/server/api.py | 13 ++++++------- test/server/test_api.py | 6 +++--- 2 files changed, 9 insertions(+), 10 deletions(-) diff --git a/src/matchbox/server/api.py b/src/matchbox/server/api.py index b297348..5ef7d57 100644 --- a/src/matchbox/server/api.py +++ b/src/matchbox/server/api.py @@ -1,6 +1,6 @@ from binascii import hexlify from enum import StrEnum -from typing import Annotated, Optional +from typing import Annotated from dotenv import find_dotenv, load_dotenv from fastapi import Depends, FastAPI, Form, HTTPException, UploadFile @@ -52,7 +52,7 @@ class SourceItem(BaseModel): schema: str table: str id: str - model: Optional[str] = None + resolution: str | None = None class Sources(BaseModel): @@ -98,13 +98,12 @@ async def list_sources( datasets = backend.datasets.list() result = [] for dataset in datasets: - print(dataset) result.append( SourceItem( table=dataset.table, id=dataset.id, schema=dataset.schema, - model=hexlify(dataset.model).decode("ascii"), + resolution=hexlify(dataset.resolution).decode("ascii"), ) ) return Sources(sources=result) @@ -116,13 +115,13 @@ async def get_source( ) -> dict[str, SourceItem] | str: datasets = backend.datasets.list() for dataset in datasets: - model = hexlify(dataset.model).decode("ascii") - if model == hash: + resolution = hexlify(dataset.resolution).decode("ascii") + if resolution == hash: result_obj = SourceItem( table=dataset.table, id=dataset.id, schema=dataset.schema, - model=model, + resolution=resolution, ) return {"source": result_obj} return "Source not found" diff --git a/test/server/test_api.py b/test/server/test_api.py index 7d34d61..3d25aa4 100644 --- a/test/server/test_api.py +++ b/test/server/test_api.py @@ -57,7 +57,7 @@ def test_list_sources(self, get_backend): hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" byte_arr = bytearray.fromhex(hash_hex) obj_mock = Sources( - table="mock table", schema="mock_schema", id="mock_id", model=byte_arr + table="mock table", schema="mock_schema", id="mock_id", resolution=byte_arr ) mock_backend = Mock() mock_backend.datasets.list = Mock(return_value=[obj_mock]) @@ -70,7 +70,7 @@ def test_get_source(self, get_backend): hash_hex = "5eb63bbbe01eeed093cb22bb8f5acdc3" byte_arr = bytearray.fromhex(hash_hex) obj_mock = Sources( - table="mock_table", schema="mock_schema", id="mock_id", model=byte_arr + table="mock_table", schema="mock_schema", id="mock_id", resolution=byte_arr ) mock_backend = Mock() mock_backend.datasets.list = Mock(return_value=[obj_mock]) @@ -83,7 +83,7 @@ def test_get_source(self, get_backend): "schema": "mock_schema", "table": "mock_table", "id": "mock_id", - "model": hash_hex, + "resolution": hash_hex, } }