From fd7f57de655e821f51fb59b476ce93266189a023 Mon Sep 17 00:00:00 2001
From: Alexis Lucattini <Alexis.Lucattini@umccr.org>
Date: Tue, 19 Nov 2024 11:09:02 +1100
Subject: [PATCH] Added hg38 genome size to multiqc cl config

---
 config/workflow.yaml                                         | 2 +-
 .../1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl       | 5 +++++
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/config/workflow.yaml b/config/workflow.yaml
index 91d3edc3..62d3aa31 100644
--- a/config/workflow.yaml
+++ b/config/workflow.yaml
@@ -309,7 +309,7 @@ workflows:
         md5sum: 6e20bae050dfae264c00cdc8a2be0bbf
       - name: 1.3.1--1.21
         path: 1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
-        md5sum: 53ddc08bf654bf03bffc7edb4a3ccdf6
+        md5sum: dfad0c0195611d1ff0ca6a255955fc00
     categories: []
   - name: dragen-instrument-run-fastq-to-ora-pipeline
     path: dragen-instrument-run-fastq-to-ora-pipeline
diff --git a/workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl b/workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
index c2d1cf0c..044ee553 100644
--- a/workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
+++ b/workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
@@ -112,6 +112,11 @@ steps:
       title:
         source: instrument_run_id
         valueFrom: "$(self) BCLConvert MultiQC Report"
+      cl_config:
+        valueFrom: |
+          ${
+             return JSON.stringify({"bclconvert": { "genome_size": "hg38_genome" }});
+           }
     out:
       - id: output_directory
       - id: output_file