diff --git a/conda/env/lock/conda-lock.yml b/conda/env/lock/conda-lock.yml
index b845c7cb..bd62238a 100644
--- a/conda/env/lock/conda-lock.yml
+++ b/conda/env/lock/conda-lock.yml
@@ -13,7 +13,7 @@
 version: 1
 metadata:
   content_hash:
-    linux-64: 58382f9ba5e64b5a3206a2e9ae2cace9705e76766b3f8abaafb889a681c5ebb4
+    linux-64: 57d3b480ba2190f48047c23f6135978ff535b67117d7670fa62ad861622ca7c5
   channels:
   - url: umccr
     used_env_vars: []
@@ -49,14 +49,14 @@ package:
   category: main
   optional: false
 - name: ca-certificates
-  version: 2023.5.7
+  version: 2023.7.22
   manager: conda
   platform: linux-64
   dependencies: {}
-  url: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.5.7-hbcca054_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda
   hash:
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-    sha256: 0cf1bb3d0bfc5519b60af2c360fa4888fb838e1476b1e0f65b9dbc48b45c7345
+    md5: a73ecd2988327ad4c8f2c331482917f2
+    sha256: 525b7b6b5135b952ec1808de84e5eca57c7c7ff144e29ef3e96ae4040ff432c1
   category: main
   optional: false
 - name: font-ttf-dejavu-sans-mono
@@ -330,6 +330,19 @@ package:
     sha256: 4fcfedc44e4c9a053f0416f9fc6ab6ed50644fca3a761126dbd00d09db1f546a
   category: main
   optional: false
+- name: gmp
+  version: 6.2.1
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=7.5.0'
+    libstdcxx-ng: '>=7.5.0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/gmp-6.2.1-h58526e2_0.tar.bz2
+  hash:
+    md5: b94cf2db16066b242ebd26db2facbd56
+    sha256: 07a5319e1ac54fe5d38f50c60f7485af7f830b036da56957d0bfb7558a886198
+  category: main
+  optional: false
 - name: graphite2
   version: 1.3.13
   manager: conda
@@ -552,16 +565,16 @@ package:
   category: main
   optional: false
 - name: openssl
-  version: 3.1.1
+  version: 3.1.2
   manager: conda
   platform: linux-64
   dependencies:
     ca-certificates: ''
     libgcc-ng: '>=12'
-  url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.1-hd590300_1.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.2-hd590300_0.conda
   hash:
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-    sha256: 407d655643389bdb49266842a816815c981ae98f3513a6a2059b908b3abb380a
+    md5: e5ac5227582d6c83ccf247288c0eb095
+    sha256: b113fbac327c90cdc29c2fac0f2a2e5cc0d1918b2a5ffa7abd49b695b9b3c6e9
   category: main
   optional: false
 - name: pixman
@@ -613,15 +626,15 @@ package:
   category: main
   optional: false
 - name: xorg-libice
-  version: 1.0.10
+  version: 1.1.1
   manager: conda
   platform: linux-64
   dependencies:
-    libgcc-ng: '>=9.3.0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.0.10-h7f98852_0.tar.bz2
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.1.1-hd590300_0.conda
   hash:
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-    sha256: f15ce1dff16823888bcc2be1738aadcb36699be1e2dd2afa347794c7ec6c1587
+    md5: b462a33c0be1421532f28bfe8f4a7514
+    sha256: 5aa9b3682285bb2bf1a8adc064cb63aff76ef9178769740d855abb42b0d24236
   category: main
   optional: false
 - name: xorg-libxau
@@ -825,7 +838,7 @@ package:
   category: main
   optional: false
 - name: libxml2
-  version: 2.11.4
+  version: 2.11.5
   manager: conda
   platform: linux-64
   dependencies:
@@ -834,22 +847,10 @@ package:
     libiconv: '>=1.17,<2.0a0'
     libzlib: '>=1.2.13,<1.3.0a0'
     xz: '>=5.2.6,<6.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.11.4-h0d562d8_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.11.5-h0d562d8_0.conda
   hash:
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-    sha256: bc7fa8590c15ffdea5101075ce02de09441c9f378ac1d05e26510d12d25d7099
-  category: main
-  optional: false
-- name: pandoc
-  version: 2.19.2
-  manager: conda
-  platform: linux-64
-  dependencies:
-    libzlib: '>=1.2.13,<1.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/pandoc-2.19.2-h32600fe_2.conda
-  hash:
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-    sha256: f9452f407a1c298d091279c8255e1db301c1d5b772ccf2e7e60d370b45d21fc7
+    md5: 558ab736404275d7df61c473c1af35aa
+    sha256: c33371629ed75e1e7c16b1129b8f3086a12e6bbe1a7132b9bbf5e6224464a37d
   category: main
   optional: false
 - name: pcre2
@@ -893,17 +894,17 @@ package:
   category: main
   optional: false
 - name: xorg-libsm
-  version: 1.2.3
+  version: 1.2.4
   manager: conda
   platform: linux-64
   dependencies:
-    libgcc-ng: '>=9.3.0'
-    libuuid: '>=2.32.1,<3.0a0'
-    xorg-libice: 1.0.*
-  url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libsm-1.2.3-hd9c2040_1000.tar.bz2
+    libgcc-ng: '>=12'
+    libuuid: '>=2.38.1,<3.0a0'
+    xorg-libice: '>=1.1.1,<2.0a0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libsm-1.2.4-h7391055_0.conda
   hash:
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-    sha256: bdb350539521ddc1f30cc721b6604eced8ef72a0ec146e378bfe89e2be17ab35
+    md5: 93ee23f12bc2e684548181256edd2cf6
+    sha256: 089ad5f0453c604e18985480218a84b27009e9e6de9a0fa5f4a20b8778ede1f1
   category: main
   optional: false
 - name: zlib
@@ -990,7 +991,7 @@ package:
   category: main
   optional: false
 - name: krb5
-  version: 1.21.1
+  version: 1.21.2
   manager: conda
   platform: linux-64
   dependencies:
@@ -998,11 +999,11 @@ package:
     libedit: '>=3.1.20191231,<4.0a0'
     libgcc-ng: '>=12'
     libstdcxx-ng: '>=12'
-    openssl: '>=3.1.1,<4.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.1-h659d440_0.conda
+    openssl: '>=3.1.2,<4.0a0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda
   hash:
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-    sha256: dd1058d817c0e31d6a0d967650221a759758981bd8821494ae900009ad8bbff3
+    md5: cd95826dbd331ed1be26bdf401432844
+    sha256: 259bfaae731989b252b7d2228c1330ef91b641c9d68ff87dae02cbae682cb3e4
   category: main
   optional: false
 - name: libcblas
@@ -1018,21 +1019,21 @@ package:
   category: main
   optional: false
 - name: libgit2
-  version: 1.6.4
+  version: 1.7.1
   manager: conda
   platform: linux-64
   dependencies:
     __glibc: '>=2.17,<3.0.a0'
     libgcc-ng: '>=12'
-    libssh2: '>=1.10.0,<2.0a0'
+    libssh2: '>=1.11.0,<2.0a0'
     libstdcxx-ng: '>=12'
     libzlib: '>=1.2.13,<1.3.0a0'
-    openssl: '>=3.1.0,<4.0a0'
+    openssl: '>=3.1.2,<4.0a0'
     pcre2: '>=10.40,<10.41.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/libgit2-1.6.4-h747ad27_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/libgit2-1.7.1-hca3a8ce_0.conda
   hash:
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-    sha256: 52420fd70e6805405afe7098a69a042150a7bcbd76f70a69923c08ed6181096a
+    md5: 6af97ac284ffaf76d8f63cc1f9d64f7a
+    sha256: 50c36d0b699dcf982c618ad41c36ccbce9ca1303a2f349b30ab3dab93b0d6ab9
   category: main
   optional: false
 - name: libglib
@@ -1085,6 +1086,20 @@ package:
     sha256: 920943ad46869938bd070ccd4c0117594e07538bc6b27b75462594c67b6f215d
   category: main
   optional: false
+- name: pandoc
+  version: 3.1.3
+  manager: conda
+  platform: linux-64
+  dependencies:
+    gmp: ''
+    libzlib: '>=1.2.13,<1.3.0a0'
+    zlib: ''
+  url: https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.1.3-h32600fe_0.conda
+  hash:
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+    sha256: 52d23e2fded05e7a19d9d7996f19ed837b46578b6e5951b8c5990cf919404ffc
+  category: main
+  optional: false
 - name: python
   version: 3.11.4
   manager: conda
@@ -1171,7 +1186,7 @@ package:
   category: main
   optional: false
 - name: libcurl
-  version: 8.1.2
+  version: 8.2.1
   manager: conda
   platform: linux-64
   dependencies:
@@ -1182,10 +1197,10 @@ package:
     libzlib: '>=1.2.13,<1.3.0a0'
     openssl: '>=3.1.1,<4.0a0'
     zstd: '>=1.5.2,<1.6.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.1.2-hca28451_1.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.2.1-hca28451_0.conda
   hash:
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-    sha256: b051122bf6e73715231a907c8bb2424638ced5e98170f96c7d3248083ec40be9
+    md5: 96aec6156d58591f5a4e67056521ce1b
+    sha256: def04dfe898cfdcbf13bae00fe4b78308fe0cfc095bb8769395b038c02056fdd
   category: main
   optional: false
 - name: libv8
@@ -1239,14 +1254,14 @@ package:
   dependencies:
     libgcc-ng: '>=12'
     xorg-kbproto: ''
-    xorg-libice: 1.0.*
-    xorg-libsm: 1.2.*
-    xorg-libx11: '>=1.8.4,<2.0a0'
+    xorg-libice: '>=1.1.1,<2.0a0'
+    xorg-libsm: '>=1.2.4,<2.0a0'
+    xorg-libx11: '>=1.8.6,<2.0a0'
     xorg-xproto: ''
-  url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.0-hd590300_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.0-hd590300_1.conda
   hash:
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-    sha256: fbceccea26f81d557ac93ca08afa95b3638f713c43deb468488013218be11fed
+    md5: ae92aab42726eb29d16488924f7312cb
+    sha256: e7648d1efe2e858c4bc63ccf4a637c841dc971b37ded85a01be97a5e240fecfa
   category: main
   optional: false
 - name: cairo
@@ -1277,21 +1292,21 @@ package:
   category: main
   optional: false
 - name: curl
-  version: 8.1.2
+  version: 8.2.1
   manager: conda
   platform: linux-64
   dependencies:
     krb5: '>=1.21.1,<1.22.0a0'
-    libcurl: 8.1.2
+    libcurl: 8.2.1
     libgcc-ng: '>=12'
     libssh2: '>=1.11.0,<2.0a0'
     libzlib: '>=1.2.13,<1.3.0a0'
     openssl: '>=3.1.1,<4.0a0'
     zstd: '>=1.5.2,<1.6.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/curl-8.1.2-hca28451_1.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/curl-8.2.1-hca28451_0.conda
   hash:
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-    sha256: 1a8fdfbbef330a43b7bcbc6296be59ddc87372e5269ef41b0ea0e789410d00fb
+    md5: b7bf35457c5495009392c17feec4fddd
+    sha256: c7d660b20191f0a1ed4c211d549cfa670a19f878248b63718f25b941d76c626c
   category: main
   optional: false
 - name: harfbuzz
@@ -1534,15 +1549,15 @@ package:
   category: main
   optional: false
 - name: r-cpp11
-  version: 0.4.4
+  version: 0.4.6
   manager: conda
   platform: linux-64
   dependencies:
     r-base: '>=4.2,<4.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/noarch/r-cpp11-0.4.4-r42hc72bb7e_0.conda
+  url: https://conda.anaconda.org/conda-forge/noarch/r-cpp11-0.4.6-r42hc72bb7e_0.conda
   hash:
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-    sha256: dbf69ca4e30f55c4d78e272bbf429f7f016d9b63a5c35225ae840e0b06b97c85
+    md5: 2d724904d0e2a8f383df6e8e92bb42ad
+    sha256: e978e06d6aceac1b630435840032ea12fa44b4b85dda1c4d14ebd28ecd0c0a2b
   category: main
   optional: false
 - name: r-crayon
@@ -1558,17 +1573,17 @@ package:
   category: main
   optional: false
 - name: r-curl
-  version: 5.0.1
+  version: 5.0.2
   manager: conda
   platform: linux-64
   dependencies:
-    libcurl: '>=8.1.2,<9.0a0'
+    libcurl: '>=8.2.1,<9.0a0'
     libgcc-ng: '>=12'
     r-base: '>=4.2,<4.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/r-curl-5.0.1-r42hf9611b0_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/r-curl-5.0.2-r42hf9611b0_0.conda
   hash:
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-    sha256: 53f091f6df63ea74d5d7134e5085c0b930c88f811552e05da1eae730cd6ef9e7
+    md5: 076bf0162fac187c531a4a3cb1503c40
+    sha256: 65658f85a17509031b4debda8bba05829003a7069db561a0144b02894831bb2e
   category: main
   optional: false
 - name: r-data.table
@@ -1678,17 +1693,17 @@ package:
   category: main
   optional: false
 - name: r-fs
-  version: 1.6.2
+  version: 1.6.3
   manager: conda
   platform: linux-64
   dependencies:
     libgcc-ng: '>=12'
     libstdcxx-ng: '>=12'
     r-base: '>=4.2,<4.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/r-fs-1.6.2-r42ha503ecb_1.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/r-fs-1.6.3-r42ha503ecb_0.conda
   hash:
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-    sha256: 55749779f3d9391c56f78d9e2cb6e16511dce060476de9204c06ebb0754a0686
+    md5: 29c3d5ab4862458a8337afedc16d65d1
+    sha256: 97cc0af7b43a6ebee7348e3d6d370f8fbd6706c7958524e7d2a762da8c564634
   category: main
   optional: false
 - name: r-futile.options
@@ -1985,15 +2000,15 @@ package:
   category: main
   optional: false
 - name: r-remotes
-  version: 2.4.2
+  version: 2.4.2.1
   manager: conda
   platform: linux-64
   dependencies:
     r-base: '>=4.2,<4.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/noarch/r-remotes-2.4.2-r42hc72bb7e_2.conda
+  url: https://conda.anaconda.org/conda-forge/noarch/r-remotes-2.4.2.1-r42hc72bb7e_0.conda
   hash:
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-    sha256: 744b28b799a65630d10fd2a5eb8d70b67e646625eeb561166a3ae7218e65b7e8
+    md5: ee5631dc438487c8eb5ce044f2b8e3ea
+    sha256: 14f4f92e52c1e9450550a14903938fcb288afee9ca1ed6905031a3f1621b5bd9
   category: main
   optional: false
 - name: r-rlang
@@ -2114,17 +2129,17 @@ package:
   category: main
   optional: false
 - name: r-xfun
-  version: '0.39'
+  version: '0.40'
   manager: conda
   platform: linux-64
   dependencies:
     libgcc-ng: '>=12'
     libstdcxx-ng: '>=12'
     r-base: '>=4.2,<4.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/r-xfun-0.39-r42ha503ecb_1.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/r-xfun-0.40-r42ha503ecb_0.conda
   hash:
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-    sha256: f420686d0f73ddf7db2870525c4793675ae4f2d25cda93b1bab2f7a92b161ced
+    md5: 516ab03e1c57171bf0e50bcb98ba8c7b
+    sha256: b609d67c56f04ac8cc1d3159defb5873e7c2ca1cf048fd47a6b77ad9ad9c82e8
   category: main
   optional: false
 - name: r-xtable
@@ -2325,7 +2340,7 @@ package:
   category: main
   optional: false
 - name: r-matrix
-  version: '1.6_0'
+  version: '1.6_1'
   manager: conda
   platform: linux-64
   dependencies:
@@ -2334,10 +2349,10 @@ package:
     liblapack: '>=3.9.0,<4.0a0'
     r-base: '>=4.2,<4.3.0a0'
     r-lattice: ''
-  url: https://conda.anaconda.org/conda-forge/linux-64/r-matrix-1.6_0-r42h316c678_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/r-matrix-1.6_1-r42h316c678_0.conda
   hash:
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-    sha256: 0d38d8853b19a92596e5630bf97c768b58cae949b52a2ad1a2f1a6a3aa7bc691
+    md5: 5c851831b9a4747e1dbdcfbe7e80cfec
+    sha256: 092eae4fd255eb807cca1e8d686cc2e41537f5cf8641425e9116fe426acba59e
   category: main
   optional: false
 - name: r-munsell
@@ -2354,7 +2369,7 @@ package:
   category: main
   optional: false
 - name: r-nlme
-  version: '3.1_162'
+  version: '3.1_163'
   manager: conda
   platform: linux-64
   dependencies:
@@ -2363,10 +2378,10 @@ package:
     libgfortran5: '>=12.3.0'
     r-base: '>=4.2,<4.3.0a0'
     r-lattice: ''
-  url: https://conda.anaconda.org/conda-forge/linux-64/r-nlme-3.1_162-r42h61816a4_1.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/r-nlme-3.1_163-r42h61816a4_0.conda
   hash:
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-    sha256: b6131a56a626babe6e038f10fd727da2162838677f5db5769f0ffaf87c3e400b
+    md5: c12d03bcc2f6a6d61bee2e080cdc4175
+    sha256: 4ed4420109b627b705a3368b93fef99c9ad87c97fc37073d84269d8aa2b2cae9
   category: main
   optional: false
 - name: r-prettyunits
@@ -2455,16 +2470,16 @@ package:
   category: main
   optional: false
 - name: r-tinytex
-  version: '0.45'
+  version: '0.46'
   manager: conda
   platform: linux-64
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