diff --git a/lib/workload/stateless/cttso_v2_pipeline_manager/Readme.md b/lib/workload/stateless/cttso_v2_pipeline_manager/Readme.md
index 15fdc54d4..f7110107a 100644
--- a/lib/workload/stateless/cttso_v2_pipeline_manager/Readme.md
+++ b/lib/workload/stateless/cttso_v2_pipeline_manager/Readme.md
@@ -46,7 +46,7 @@ The AWS Step functions takes in the following parameters:
 
 ### Example Input
 
-```json
+```json5
 {
   "project_id": "7595e8f2-32d3-4c76-a324-c6a85dae87b5",
   "sample_id": "L2301368",
@@ -59,8 +59,8 @@ The AWS Step functions takes in the following parameters:
     "project_owner": "UMCCR",
     "project_name": "testing"
   },
-  "samplesheet_b64gz": "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",
-  "fastq_list_rows_b64gz": "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"
+  "samplesheet_b64gz": "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",  /* pragma: allowlist secret */
+  "fastq_list_rows_b64gz": "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"  /* pragma: allowlist secret */
 }
 ```
 
@@ -72,7 +72,7 @@ The analysis ID of the nextflow pipeline run launched by the step functions lamb
 
 The CreateNextflowAnalysis submission as a JSON object for reproducibility
 
-```json
+```json5
 {
   "analysis_id": "3e17b6ff-ff63-43ab-ac15-e939e88932b6",
   "analysis_launch_payload": {
@@ -86,7 +86,7 @@ The CreateNextflowAnalysis submission as a JSON object for reproducibility
       "userTags": [
         "subject_id=SBJ04405",
         "library_id=L2301368",
-        "instrument_run_id=231116_A01052_0172_BHVLM5DSX7",
+        "instrument_run_id=231116_A01052_0172_BHVLM5DSX7",  /* pragma: allowlist secret */
         "project_owner=UMCCR",
         "project_name=testing"
       ],
diff --git a/lib/workload/stateless/cttso_v2_pipeline_manager/lambdas/get_cttso_cache_and_output_paths/handler.py b/lib/workload/stateless/cttso_v2_pipeline_manager/lambdas/get_cttso_cache_and_output_paths/handler.py
index f5fb7c99e..dfda815a8 100644
--- a/lib/workload/stateless/cttso_v2_pipeline_manager/lambdas/get_cttso_cache_and_output_paths/handler.py
+++ b/lib/workload/stateless/cttso_v2_pipeline_manager/lambdas/get_cttso_cache_and_output_paths/handler.py
@@ -100,13 +100,13 @@ def handler(event, context):
 #
 #     """
 #     {
-#         "cache_path": "/ilmn_cttso_fastq_cache/20241231abcd1234/L12345678_run_cache",
+#         "cache_path": "/ilmn_cttso_fastq_cache/20241231abcd1234/L12345678_run_cache",  /* pragma: allowlist secret */
 #         "output_path": "/ilmn_cttso_fastq_cache/20241231abcd1234",
 #         "cache_uri": "icav2://project_id/ilmn_cttso_fastq_cache/20241231abcd1234/L12345678_run_cache/",
 #         "output_uri": "icav2://project_id/ilmn_cttso_fastq_cache/20241231abcd1234/"
 #     }
 #     {
-#         "cache_path": "/ilmn_cttso_fastq_cache/2024030527c5a3d4/L12345678_run_cache",
+#         "cache_path": "/ilmn_cttso_fastq_cache/2024030527c5a3d4/L12345678_run_cache",  /* pragma: allowlist secret */
 #         "output_path": "/ilmn_cttso_fastq_cache/2024030527c5a3d4",
 #         "cache_uri": "icav2://project_id/ilmn_cttso_fastq_cache/2024030527c5a3d4/L12345678_run_cache/",
 #         "output_uri": "icav2://project_id/ilmn_cttso_fastq_cache/2024030527c5a3d4/"