From e353d4199ade917dfed4ef32fdfd92f07d639e13 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Thu, 22 Feb 2024 15:59:24 +1100
Subject: [PATCH 01/31] Get rust-analyzer working again

---
 .vscode/settings.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.vscode/settings.json b/.vscode/settings.json
index c116f2d07..1e1e05328 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -1,6 +1,6 @@
 {
   "rust-analyzer.linkedProjects": [
-    "lib/workload/stateful/filemanager/Cargo.toml",
+    "lib/workload/stateless/filemanager/Cargo.toml",
     "skel/rust-api/Cargo.toml"
   ]
 }

From d4195a4a206d307edc1c7568a7354b9b839035da Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Thu, 22 Feb 2024 16:05:49 +1100
Subject: [PATCH 02/31] Apigw CDK scaffold for the lambda (objects) query
 functionality

---
 lib/workload/stateless/filemanager/Cargo.lock |  4 +++
 lib/workload/stateless/filemanager/Cargo.toml |  2 +-
 .../deploy/constructs/functions/query.ts      | 16 +++++++++++
 .../filemanager/deploy/lib/filemanager.ts     | 28 +++++++++++++++++++
 .../filemanager/filemanager-api/Cargo.toml    |  8 ++++++
 .../filemanager/filemanager-api/src/main.rs   |  3 ++
 6 files changed, 60 insertions(+), 1 deletion(-)
 create mode 100644 lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts
 create mode 100644 lib/workload/stateless/filemanager/filemanager-api/Cargo.toml
 create mode 100644 lib/workload/stateless/filemanager/filemanager-api/src/main.rs

diff --git a/lib/workload/stateless/filemanager/Cargo.lock b/lib/workload/stateless/filemanager/Cargo.lock
index 24068e4a3..c4fdf0340 100644
--- a/lib/workload/stateless/filemanager/Cargo.lock
+++ b/lib/workload/stateless/filemanager/Cargo.lock
@@ -1095,6 +1095,10 @@ dependencies = [
  "uuid",
 ]
 
+[[package]]
+name = "filemanager-api"
+version = "0.1.0"
+
 [[package]]
 name = "filemanager-http-lambda"
 version = "0.1.0"
diff --git a/lib/workload/stateless/filemanager/Cargo.toml b/lib/workload/stateless/filemanager/Cargo.toml
index 40e4c7565..244a5c528 100644
--- a/lib/workload/stateless/filemanager/Cargo.toml
+++ b/lib/workload/stateless/filemanager/Cargo.toml
@@ -2,7 +2,7 @@
 resolver = "2"
 
 members = [
-    "filemanager",
+    "filemanager", "filemanager-api",
     "filemanager-http-lambda",
     "filemanager-ingest-lambda",
     "filemanager-migrate-lambda"
diff --git a/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts b/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts
new file mode 100644
index 000000000..1477c460a
--- /dev/null
+++ b/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts
@@ -0,0 +1,16 @@
+import { Construct } from 'constructs';
+import * as fn from './function';
+
+/**
+ * Props for the (objects) query function.
+ */
+export type ObjectsQueryFunctionProps = fn.FunctionPropsNoPackage;
+
+/**
+ * A construct for the Lambda query function.
+ */
+export class ObjectsQueryFunction extends fn.Function {
+  constructor(scope: Construct, id: string, props: ObjectsQueryFunctionProps) {
+    super(scope, id, { package: 'filemanager-objects-query-lambda', ...props });
+  }
+}
diff --git a/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
index fd051fc09..c72324d6f 100644
--- a/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
+++ b/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
@@ -1,11 +1,14 @@
 import { Construct } from 'constructs';
 import { IngestFunction, IngestFunctionProps } from '../constructs/functions/ingest';
+import { ObjectsQueryFunction, ObjectsQueryFunctionProps } from '../constructs/functions/query';
 import { CdkResourceInvoke } from '../../../functions/cdk_resource_invoke';
 import { MigrateFunction } from '../constructs/functions/migrate';
 import * as fn from '../constructs/functions/function';
 import { IVpc } from 'aws-cdk-lib/aws-ec2';
 import { IQueue } from 'aws-cdk-lib/aws-sqs';
 import { DatabaseProps } from '../constructs/functions/function';
+import { HttpApi, HttpMethod } from '@aws-cdk/aws-apigatewayv2-alpha';
+import { HttpLambdaIntegration } from '@aws-cdk/aws-apigatewayv2-integrations-alpha';
 
 /**
  * Props for the filemanager stack.
@@ -55,6 +58,8 @@ export class Filemanager extends Construct {
       });
     }
 
+
+
     new IngestFunction(this, 'IngestLambda', {
       vpc: props.vpc,
       databaseSecret: props.databaseSecret,
@@ -64,5 +69,28 @@ export class Filemanager extends Construct {
       buildEnvironment: props?.buildEnvironment,
       rustLog: props?.rustLog,
     });
+
+    let objectsQuery = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', {
+      vpc: props.vpc,
+      databaseSecret: props.databaseSecret,
+      databaseSecurityGroup: props.databaseSecurityGroup,
+      buildEnvironment: props?.buildEnvironment,
+      rustLog: props?.rustLog, 
+    });
+
+    // API Gateway v2 endpoints for querying data
+    const api = new HttpApi(this, 'HttpApi');
+
+    const ObjectsQueryFunctionIntegration = new HttpLambdaIntegration(
+      id + "HtsgetIntegration",
+      objectsQuery,
+    );
+
+    // Add a route to the API
+    api.addRoutes({
+      path: '/objects/{:id}',
+      methods: [HttpMethod.GET],
+      integration: ObjectsQueryFunctionIntegration,
+    });
   }
 }
diff --git a/lib/workload/stateless/filemanager/filemanager-api/Cargo.toml b/lib/workload/stateless/filemanager/filemanager-api/Cargo.toml
new file mode 100644
index 000000000..6ed1c978d
--- /dev/null
+++ b/lib/workload/stateless/filemanager/filemanager-api/Cargo.toml
@@ -0,0 +1,8 @@
+[package]
+name = "filemanager-api"
+version = "0.1.0"
+license.workspace = true
+edition.workspace = true
+authors.workspace = true
+
+[dependencies]
diff --git a/lib/workload/stateless/filemanager/filemanager-api/src/main.rs b/lib/workload/stateless/filemanager/filemanager-api/src/main.rs
new file mode 100644
index 000000000..e7a11a969
--- /dev/null
+++ b/lib/workload/stateless/filemanager/filemanager-api/src/main.rs
@@ -0,0 +1,3 @@
+fn main() {
+    println!("Hello, world!");
+}

From 99763c0e3bb74ce31b056040c29238da01940cae Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Thu, 22 Feb 2024 16:06:48 +1100
Subject: [PATCH 03/31] Readable version of the (hand-crafted) filemanager
 OpenAPI from months ago, probably should be discarded at this point

---
 openapi/orcabus/filemanager.json | 152 ++++++++++++++++++++++++++++++-
 1 file changed, 151 insertions(+), 1 deletion(-)

diff --git a/openapi/orcabus/filemanager.json b/openapi/orcabus/filemanager.json
index a19a2fbf6..31f479503 100644
--- a/openapi/orcabus/filemanager.json
+++ b/openapi/orcabus/filemanager.json
@@ -1 +1,151 @@
-{"openapi":"3.0.3","info":{"title":"rust-api","description":"","license":{"name":""},"version":"0.1.0"},"paths":{"/file/":{"get":{"tags":["file"],"summary":"Search query","description":"Search query\nSearch files","operationId":"search","parameters":[{"name":"id","in":"query","required":true,"schema":{"type":"integer","format":"int32"}},{"name":"name","in":"query","required":true,"schema":{"type":"string"}},{"name":"size","in":"query","required":true,"schema":{"type":"integer","format":"int64","minimum":0.0}},{"name":"hash","in":"query","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"List matching objects","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/File"}}}}}}}}},"components":{"schemas":{"File":{"type":"object","description":"Item to do.","required":["id","name","size","hash"],"properties":{"hash":{"type":"string"},"id":{"type":"integer","format":"int32"},"name":{"type":"string","example":"foo.bam"},"size":{"type":"integer","format":"int64","minimum":0.0}}},"FileError":{"oneOf":[{"type":"object","required":["NotFound"],"properties":{"NotFound":{"type":"string","description":"File not found by id."}},"example":"id = 1"},{"type":"object","required":["Unauthorized"],"properties":{"Unauthorized":{"type":"string","description":"File operation unauthorized"}},"example":"missing api key"}],"description":"File operation errors"}},"securitySchemes":{"api_key":{"type":"apiKey","in":"header","name":"File_apikey"}}},"tags":[{"name":"File","description":"File manager API"}]}
\ No newline at end of file
+{
+    "openapi": "3.0.3",
+    "info": {
+        "title": "rust-api",
+        "description": "",
+        "license": {
+            "name": ""
+        },
+        "version": "0.1.0"
+    },
+    "paths": {
+        "/file/": {
+            "get": {
+                "tags": [
+                    "file"
+                ],
+                "summary": "Search query",
+                "description": "Search query\nSearch files",
+                "operationId": "search",
+                "parameters": [
+                    {
+                        "name": "id",
+                        "in": "query",
+                        "required": true,
+                        "schema": {
+                            "type": "integer",
+                            "format": "int32"
+                        }
+                    },
+                    {
+                        "name": "name",
+                        "in": "query",
+                        "required": true,
+                        "schema": {
+                            "type": "string"
+                        }
+                    },
+                    {
+                        "name": "size",
+                        "in": "query",
+                        "required": true,
+                        "schema": {
+                            "type": "integer",
+                            "format": "int64",
+                            "minimum": 0.0
+                        }
+                    },
+                    {
+                        "name": "hash",
+                        "in": "query",
+                        "required": true,
+                        "schema": {
+                            "type": "string"
+                        }
+                    }
+                ],
+                "responses": {
+                    "200": {
+                        "description": "List matching objects",
+                        "content": {
+                            "application/json": {
+                                "schema": {
+                                    "type": "array",
+                                    "items": {
+                                        "$ref": "#/components/schemas/File"
+                                    }
+                                }
+                            }
+                        }
+                    }
+                }
+            }
+        }
+    },
+    "components": {
+        "schemas": {
+            "File": {
+                "type": "object",
+                "description": "Item to do.",
+                "required": [
+                    "id",
+                    "name",
+                    "size",
+                    "hash"
+                ],
+                "properties": {
+                    "hash": {
+                        "type": "string"
+                    },
+                    "id": {
+                        "type": "integer",
+                        "format": "int32"
+                    },
+                    "name": {
+                        "type": "string",
+                        "example": "foo.bam"
+                    },
+                    "size": {
+                        "type": "integer",
+                        "format": "int64",
+                        "minimum": 0.0
+                    }
+                }
+            },
+            "FileError": {
+                "oneOf": [
+                    {
+                        "type": "object",
+                        "required": [
+                            "NotFound"
+                        ],
+                        "properties": {
+                            "NotFound": {
+                                "type": "string",
+                                "description": "File not found by id."
+                            }
+                        },
+                        "example": "id = 1"
+                    },
+                    {
+                        "type": "object",
+                        "required": [
+                            "Unauthorized"
+                        ],
+                        "properties": {
+                            "Unauthorized": {
+                                "type": "string",
+                                "description": "File operation unauthorized"
+                            }
+                        },
+                        "example": "missing api key"
+                    }
+                ],
+                "description": "File operation errors"
+            }
+        },
+        "securitySchemes": {
+            "api_key": {
+                "type": "apiKey",
+                "in": "header",
+                "name": "File_apikey"
+            }
+        }
+    },
+    "tags": [
+        {
+            "name": "File",
+            "description": "File manager API"
+        }
+    ]
+}
\ No newline at end of file

From c73a1da0619ad82941409dd18cb399b6956b2bd4 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 23 Feb 2024 14:46:41 +1100
Subject: [PATCH 04/31] Point to the right function, thanks @mmalenic [ci skip]

---
 .../stateless/filemanager/deploy/constructs/functions/query.ts  | 2 +-
 lib/workload/stateless/filemanager/deploy/lib/filemanager.ts    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts b/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts
index 1477c460a..016a7eea1 100644
--- a/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts
+++ b/lib/workload/stateless/filemanager/deploy/constructs/functions/query.ts
@@ -11,6 +11,6 @@ export type ObjectsQueryFunctionProps = fn.FunctionPropsNoPackage;
  */
 export class ObjectsQueryFunction extends fn.Function {
   constructor(scope: Construct, id: string, props: ObjectsQueryFunctionProps) {
-    super(scope, id, { package: 'filemanager-objects-query-lambda', ...props });
+    super(scope, id, { package: 'filemanager-api', ...props });
   }
 }
diff --git a/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
index c72324d6f..465740326 100644
--- a/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
+++ b/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
@@ -83,7 +83,7 @@ export class Filemanager extends Construct {
 
     const ObjectsQueryFunctionIntegration = new HttpLambdaIntegration(
       id + "HtsgetIntegration",
-      objectsQuery,
+      objectsQuery.function
     );
 
     // Add a route to the API

From 2052cfaa8481c72e750dad8f3bb0ff2355baa2d9 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 26 Feb 2024 10:58:04 +1100
Subject: [PATCH 05/31] Ignore caches and Cargo.lock from skel/rust to avoid
 dependabot bugging us on it

---
 .gitignore | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.gitignore b/.gitignore
index 6c1075b69..d243b1c8c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -55,4 +55,7 @@ data/
 Brewfile.lock.json
 *.xml
 
+# Filemanager-specific
 target/
+lib/workload/stateful/filemanager/volume
+skel/rust-api/Cargo.lock

From 0290e1d7a36d715de0cb223986489f2dd5305bae Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 26 Feb 2024 11:47:59 +1100
Subject: [PATCH 06/31] Scaffold for Rust-side query objects api [ci skip]

---
 .../queries/api/select_object_ids.sql         |  2 ++
 .../filemanager/src/database/aws/mod.rs       |  1 +
 .../filemanager/src/database/aws/query.rs     | 36 +++++++++++++++++++
 3 files changed, 39 insertions(+)
 create mode 100644 lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
 create mode 100644 lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs

diff --git a/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql b/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
new file mode 100644
index 000000000..2b8ee180d
--- /dev/null
+++ b/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
@@ -0,0 +1,2 @@
+-- Select all objects that meet FIXME criteria
+select from object where (object_id == 1);
diff --git a/lib/workload/stateless/filemanager/filemanager/src/database/aws/mod.rs b/lib/workload/stateless/filemanager/filemanager/src/database/aws/mod.rs
index 2a3edc691..990b95c5c 100644
--- a/lib/workload/stateless/filemanager/filemanager/src/database/aws/mod.rs
+++ b/lib/workload/stateless/filemanager/filemanager/src/database/aws/mod.rs
@@ -3,6 +3,7 @@
 
 use aws_sdk_s3::types::StorageClass;
 
+pub mod query;
 pub mod ingester;
 
 #[cfg(feature = "migrate")]
diff --git a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
new file mode 100644
index 000000000..0ec57a95b
--- /dev/null
+++ b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
@@ -0,0 +1,36 @@
+use sqlx::query_file;
+
+use crate::database::Client;
+use crate::error::Result;
+
+/// Query the filemanager via REST interface.
+#[derive(Debug)]
+pub struct Query {
+    client: Client,
+}
+
+pub struct QueryResults {
+    results: Vec<String>, // FIXME: Adjust return type
+}
+
+impl Query {
+    /// Creates a new filemanager query client.
+    pub fn new(client: Client) -> Self {
+        Self { client }
+    }
+
+    /// Creates a new filemanager query client with default connection settings.
+    pub async fn with_defaults() -> Result<Self> {
+        Ok(Self {
+            client: Client::default().await?,
+        })
+    }
+
+    pub async fn query_objects(&self, query: String) -> Result<QueryResults> {
+        let query_results = query_file!("../database/queries/api/select_object_ids.sql", 
+                                            &query)
+                                .execute
+                                .await?;
+        todo!()
+    }
+}
\ No newline at end of file

From 23afd08c39bcd26ebb5c46e6d86acdfbb2d128c9 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Tue, 27 Feb 2024 14:29:07 +1100
Subject: [PATCH 07/31] Try SIMILAR TO, which is closer to regex syntax than
 LIKE:
 https://www.postgresql.org/docs/current/functions-matching.html#FUNCTIONS-LIKE
 ... I still don't like to pass user input as-is though, this is just a dev
 test... [ci skip]

---
 .../queries/api/select_object_ids.sql         |  5 +--
 .../filemanager/src/database/aws/query.rs     | 33 ++++++++++++-------
 2 files changed, 24 insertions(+), 14 deletions(-)

diff --git a/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql b/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
index 2b8ee180d..9e6e7fd22 100644
--- a/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
+++ b/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
@@ -1,2 +1,3 @@
--- Select all objects that meet FIXME criteria
-select from object where (object_id == 1);
+-- Select all objects that meet regexp criteria
+-- FIXME: Should not trust user input, should be a bit more robust than like/similar to
+select from s3_object where key similar to $1;
\ No newline at end of file
diff --git a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
index 0ec57a95b..76dda293f 100644
--- a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
+++ b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
@@ -1,4 +1,4 @@
-use sqlx::query_file;
+use sqlx::{ Row, query_file };
 
 use crate::database::Client;
 use crate::error::Result;
@@ -20,17 +20,26 @@ impl Query {
     }
 
     /// Creates a new filemanager query client with default connection settings.
-    pub async fn with_defaults() -> Result<Self> {
-        Ok(Self {
-            client: Client::default().await?,
-        })
-    }
-
     pub async fn query_objects(&self, query: String) -> Result<QueryResults> {
-        let query_results = query_file!("../database/queries/api/select_object_ids.sql", 
-                                            &query)
-                                .execute
-                                .await?;
-        todo!()
+
+        let mut tx = self.client.pool().begin().await?;
+
+        let query_results: Vec<String> = query_file!("../database/queries/api/select_object_ids.sql", &query)
+            .fetch_all(&mut *tx)
+            .await?
+            .into_iter()
+            .map(|row| row.get(0))
+            .collect();
+
+        tx.commit().await?;
+
+        let query_results = QueryResults::new(query_results); // Convert PgQueryResult to QueryResults
+        Ok(query_results)
     }
+}
+
+impl QueryResults {
+    pub fn new(results: Vec<String>) -> Self {
+        Self { results }
+    } 
 }
\ No newline at end of file

From 5ad221d47e7c693ecfcc3bebdad6e386922af80c Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Thu, 11 Apr 2024 09:43:59 +1000
Subject: [PATCH 08/31] Own stack for API gateway testing

---
 bin/orcabus.ts                                |  2 +-
 .../queries/api/select_object_ids.sql         |  2 +-
 .../filemanager/deploy/lib/filemanager.ts     | 40 ++++++++++++++++++-
 .../filemanager/src/database/aws/query.rs     |  1 +
 4 files changed, 41 insertions(+), 4 deletions(-)

diff --git a/bin/orcabus.ts b/bin/orcabus.ts
index 56afb7ebc..236a5e149 100755
--- a/bin/orcabus.ts
+++ b/bin/orcabus.ts
@@ -32,7 +32,7 @@ new OrcaBusStatefulStack(app, 'OrcaBusStatefulStack', {
   ...props,
 });
 
-new OrcaBusStatelessStack(app, 'OrcaBusStatelessStack', {
+new OrcaBusStatelessStack(app, 'OrcaBusStatelessStack-Roman', {
   ...config.stackProps.orcaBusStatelessConfig,
   ...props,
 });
diff --git a/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql b/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
index 9e6e7fd22..819bb0c0b 100644
--- a/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
+++ b/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
@@ -1,3 +1,3 @@
 -- Select all objects that meet regexp criteria
 -- FIXME: Should not trust user input, should be a bit more robust than like/similar to
-select from s3_object where key similar to $1;
\ No newline at end of file
+select from s3_object where key like $1;
\ No newline at end of file
diff --git a/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
index 465740326..2672a92f4 100644
--- a/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
+++ b/lib/workload/stateless/filemanager/deploy/lib/filemanager.ts
@@ -9,6 +9,7 @@ import { IQueue } from 'aws-cdk-lib/aws-sqs';
 import { DatabaseProps } from '../constructs/functions/function';
 import { HttpApi, HttpMethod } from '@aws-cdk/aws-apigatewayv2-alpha';
 import { HttpLambdaIntegration } from '@aws-cdk/aws-apigatewayv2-integrations-alpha';
+import { HttpJwtAuthorizer } from '@aws-cdk/aws-apigatewayv2-authorizers-alpha';
 
 /**
  * Props for the filemanager stack.
@@ -33,6 +34,21 @@ type FilemanagerProps = IngestFunctionProps & DatabaseProps & {
     readonly buckets: string[];
 };
 
+/**
+ * JWT authorization settings.
+ */
+export type FilemanagerJwtAuthSettings = {
+  /**
+   * The JWT audience.
+   */
+  jwtAudience?: string[];
+
+  /**
+   * The cognito user pool id for the authorizer. If this is not set, then a new user pool is created.
+   */
+  cogUserPoolId?: string;
+};
+
 /**
  * Construct used to configure the filemanager.
  */
@@ -78,11 +94,31 @@ export class Filemanager extends Construct {
       rustLog: props?.rustLog, 
     });
 
+    // Add an authorizer if auth is required.
+    let authorizer = undefined;
+    if (!settings.jwtAuthorizer.public) {
+      // If the cog user pool id is not specified, create a new one.
+      if (settings.jwtAuthorizer.cogUserPoolId === undefined) {
+        const pool = new UserPool(this, "userPool", {
+          userPoolName: "HtsgetRsUserPool",
+        });
+        settings.jwtAuthorizer.cogUserPoolId = pool.userPoolId;
+      }
+
+      authorizer = new HttpJwtAuthorizer(
+        id + "HtsgetAuthorizer",
+        `https://cognito-idp.${this.region}.amazonaws.com/${settings.jwtAuthorizer.cogUserPoolId}`,
+        {
+          identitySource: ["$request.header.Authorization"],
+          jwtAudience: settings.jwtAuthorizer.jwtAudience ?? [],
+        },
+      );
+    }    
     // API Gateway v2 endpoints for querying data
-    const api = new HttpApi(this, 'HttpApi');
+    const api = new HttpApi(this, 'FileManagerAPI');
 
     const ObjectsQueryFunctionIntegration = new HttpLambdaIntegration(
-      id + "HtsgetIntegration",
+      id + "FilemanagerIntegration",
       objectsQuery.function
     );
 
diff --git a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
index 76dda293f..b55c423cc 100644
--- a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
+++ b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
@@ -20,6 +20,7 @@ impl Query {
     }
 
     /// Creates a new filemanager query client with default connection settings.
+    /// -- FIXME: Should not trust user input, should be a bit more robust than like/similar to
     pub async fn query_objects(&self, query: String) -> Result<QueryResults> {
 
         let mut tx = self.client.pool().begin().await?;

From 30a85be799e5f3d9dabcf03abedbe9279cf31168 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 15 Apr 2024 16:41:31 +1000
Subject: [PATCH 09/31] Adjust lifetimes for Client on the query module

---
 .../filemanager/filemanager/src/database/aws/query.rs  | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
index b55c423cc..c99f90637 100644
--- a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
+++ b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
@@ -5,17 +5,17 @@ use crate::error::Result;
 
 /// Query the filemanager via REST interface.
 #[derive(Debug)]
-pub struct Query {
-    client: Client,
+pub struct Query<'a> {
+    client: Client<'a>,
 }
 
 pub struct QueryResults {
-    results: Vec<String>, // FIXME: Adjust return type
+    _results: Vec<String>, // FIXME: Adjust return type
 }
 
-impl Query {
+impl<'a> Query<'a> {
     /// Creates a new filemanager query client.
-    pub fn new(client: Client) -> Self {
+    pub fn new(client: Client<'a>) -> Self {
         Self { client }
     }
 

From 47da4d2b4ecbb19adbcddc8a64f2b2804bf91fce Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 19 Apr 2024 10:24:44 +1000
Subject: [PATCH 10/31] Simplify docs, remove unused warning

---
 lib/workload/stateless/filemanager/README.md                | 6 ------
 .../filemanager/filemanager/src/database/aws/query.rs       | 4 ++--
 2 files changed, 2 insertions(+), 8 deletions(-)

diff --git a/lib/workload/stateless/filemanager/README.md b/lib/workload/stateless/filemanager/README.md
index d3a8f051d..0d6a378ef 100644
--- a/lib/workload/stateless/filemanager/README.md
+++ b/lib/workload/stateless/filemanager/README.md
@@ -32,12 +32,6 @@ from an `.env` file. E.g. see [`.env.example`][env-example].
 
 For development of the rust workspace, it's recommended to install a build cache (sccache) to improve compilation speeds:
 
-```sh
-brew install sccache && export RUSTC_WRAPPER=`which sccache`
-```
-
-or
-
 ```sh
 cargo install sccache && export RUSTC_WRAPPER=`which sccache`
 ```
diff --git a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
index c99f90637..238225ddf 100644
--- a/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
+++ b/lib/workload/stateless/filemanager/filemanager/src/database/aws/query.rs
@@ -40,7 +40,7 @@ impl<'a> Query<'a> {
 }
 
 impl QueryResults {
-    pub fn new(results: Vec<String>) -> Self {
-        Self { results }
+    pub fn new(_results: Vec<String>) -> Self {
+        Self { _results }
     } 
 }
\ No newline at end of file

From 4df267e7da1b8792ec2c4f9a9f7960fc55469066 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 19 Apr 2024 10:26:40 +1000
Subject: [PATCH 11/31] Github conflicting files do not seem to be conflicting
 locally..

---
 lib/workload/stateless/filemanager/Cargo.lock | 3445 -----------------
 1 file changed, 3445 deletions(-)
 delete mode 100644 lib/workload/stateless/filemanager/Cargo.lock

diff --git a/lib/workload/stateless/filemanager/Cargo.lock b/lib/workload/stateless/filemanager/Cargo.lock
deleted file mode 100644
index bdef50c67..000000000
--- a/lib/workload/stateless/filemanager/Cargo.lock
+++ /dev/null
@@ -1,3445 +0,0 @@
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From 25a39c4f0c4bc9f665cab40f439a53f9af25fb18 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 19 Apr 2024 13:25:35 +1000
Subject: [PATCH 12/31] Keeping up with the stack tree reorg

---
 .vscode/settings.json                         |    2 +-
 .../stateless/stacks/filemanager/Cargo.lock   | 3452 +++++++++++++++++
 .../queries/api/select_object_ids.sql         |    0
 .../filemanager/filemanager-api/Cargo.toml    |    0
 .../filemanager/filemanager-api/src/main.rs   |    0
 5 files changed, 3453 insertions(+), 1 deletion(-)
 create mode 100644 lib/workload/stateless/stacks/filemanager/Cargo.lock
 rename lib/workload/stateless/{ => stacks}/filemanager/database/queries/api/select_object_ids.sql (100%)
 rename lib/workload/stateless/{ => stacks}/filemanager/filemanager-api/Cargo.toml (100%)
 rename lib/workload/stateless/{ => stacks}/filemanager/filemanager-api/src/main.rs (100%)

diff --git a/.vscode/settings.json b/.vscode/settings.json
index 1e1e05328..40105014c 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -1,6 +1,6 @@
 {
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new file mode 100644
index 000000000..efd8bdc4f
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+name = "windows_aarch64_gnullvm"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8"
+
+[[package]]
+name = "windows_aarch64_gnullvm"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7088eed71e8b8dda258ecc8bac5fb1153c5cffaf2578fc8ff5d61e23578d3263"
+
+[[package]]
+name = "windows_aarch64_msvc"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc"
+
+[[package]]
+name = "windows_aarch64_msvc"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9985fd1504e250c615ca5f281c3f7a6da76213ebd5ccc9561496568a2752afb6"
+
+[[package]]
+name = "windows_i686_gnu"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e"
+
+[[package]]
+name = "windows_i686_gnu"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "88ba073cf16d5372720ec942a8ccbf61626074c6d4dd2e745299726ce8b89670"
+
+[[package]]
+name = "windows_i686_gnullvm"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "87f4261229030a858f36b459e748ae97545d6f1ec60e5e0d6a3d32e0dc232ee9"
+
+[[package]]
+name = "windows_i686_msvc"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406"
+
+[[package]]
+name = "windows_i686_msvc"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "db3c2bf3d13d5b658be73463284eaf12830ac9a26a90c717b7f771dfe97487bf"
+
+[[package]]
+name = "windows_x86_64_gnu"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e"
+
+[[package]]
+name = "windows_x86_64_gnu"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4e4246f76bdeff09eb48875a0fd3e2af6aada79d409d33011886d3e1581517d9"
+
+[[package]]
+name = "windows_x86_64_gnullvm"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc"
+
+[[package]]
+name = "windows_x86_64_gnullvm"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "852298e482cd67c356ddd9570386e2862b5673c85bd5f88df9ab6802b334c596"
+
+[[package]]
+name = "windows_x86_64_msvc"
+version = "0.48.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538"
+
+[[package]]
+name = "windows_x86_64_msvc"
+version = "0.52.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "bec47e5bfd1bff0eeaf6d8b485cc1074891a197ab4225d504cb7a1ab88b02bf0"
+
+[[package]]
+name = "xmlparser"
+version = "0.13.6"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "66fee0b777b0f5ac1c69bb06d361268faafa61cd4682ae064a171c16c433e9e4"
+
+[[package]]
+name = "zerocopy"
+version = "0.7.32"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "74d4d3961e53fa4c9a25a8637fc2bfaf2595b3d3ae34875568a5cf64787716be"
+dependencies = [
+ "zerocopy-derive",
+]
+
+[[package]]
+name = "zerocopy-derive"
+version = "0.7.32"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9ce1b18ccd8e73a9321186f97e46f9f04b778851177567b1975109d26a08d2a6"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn 2.0.60",
+]
+
+[[package]]
+name = "zeroize"
+version = "1.7.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "525b4ec142c6b68a2d10f01f7bbf6755599ca3f81ea53b8431b7dd348f5fdb2d"
diff --git a/lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql b/lib/workload/stateless/stacks/filemanager/database/queries/api/select_object_ids.sql
similarity index 100%
rename from lib/workload/stateless/filemanager/database/queries/api/select_object_ids.sql
rename to lib/workload/stateless/stacks/filemanager/database/queries/api/select_object_ids.sql
diff --git a/lib/workload/stateless/filemanager/filemanager-api/Cargo.toml b/lib/workload/stateless/stacks/filemanager/filemanager-api/Cargo.toml
similarity index 100%
rename from lib/workload/stateless/filemanager/filemanager-api/Cargo.toml
rename to lib/workload/stateless/stacks/filemanager/filemanager-api/Cargo.toml
diff --git a/lib/workload/stateless/filemanager/filemanager-api/src/main.rs b/lib/workload/stateless/stacks/filemanager/filemanager-api/src/main.rs
similarity index 100%
rename from lib/workload/stateless/filemanager/filemanager-api/src/main.rs
rename to lib/workload/stateless/stacks/filemanager/filemanager-api/src/main.rs

From 04cfe88470f7542b72b98c3330fbca77e43c5404 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 19 Apr 2024 13:31:36 +1000
Subject: [PATCH 13/31] compose's version field obsolete, interesting and
 welcome deprecation: '(...) filemanager/compose.yml:  is obsolete'

---
 lib/workload/stateless/stacks/filemanager/Cargo.toml  | 3 ++-
 lib/workload/stateless/stacks/filemanager/compose.yml | 2 --
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/lib/workload/stateless/stacks/filemanager/Cargo.toml b/lib/workload/stateless/stacks/filemanager/Cargo.toml
index 09ae87e10..ba6ce0c50 100644
--- a/lib/workload/stateless/stacks/filemanager/Cargo.toml
+++ b/lib/workload/stateless/stacks/filemanager/Cargo.toml
@@ -2,7 +2,8 @@
 resolver = "2"
 
 members = [
-    "filemanager", "filemanager-api",
+    "filemanager",
+    "filemanager-api",
     "filemanager-http-lambda",
     "filemanager-ingest-lambda",
     "filemanager-migrate-lambda"
diff --git a/lib/workload/stateless/stacks/filemanager/compose.yml b/lib/workload/stateless/stacks/filemanager/compose.yml
index 34177cfc6..9841a8a1b 100644
--- a/lib/workload/stateless/stacks/filemanager/compose.yml
+++ b/lib/workload/stateless/stacks/filemanager/compose.yml
@@ -1,5 +1,3 @@
-version: '3.1'
-
 services:
   postgres:
     build: database

From 0fafe3331acd05641ede38e660c6edbecd89a771 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 19 Apr 2024 14:25:43 +1000
Subject: [PATCH 14/31] Fix ApiGateway v2 CDK for Filemanager Query lambda

---
 .../deploy/constructs/functions/query.ts      |  5 +-
 .../filemanager/deploy/lib/filemanager.ts     | 62 +++++++++----------
 2 files changed, 34 insertions(+), 33 deletions(-)

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts
index 016a7eea1..7118e71fd 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts
@@ -1,16 +1,17 @@
 import { Construct } from 'constructs';
 import * as fn from './function';
+import { DatabaseProps } from './function';
 
 /**
  * Props for the (objects) query function.
  */
-export type ObjectsQueryFunctionProps = fn.FunctionPropsNoPackage;
+export type ObjectsQueryFunctionProps = fn.FunctionPropsNoPackage & DatabaseProps;
 
 /**
  * A construct for the Lambda query function.
  */
 export class ObjectsQueryFunction extends fn.Function {
   constructor(scope: Construct, id: string, props: ObjectsQueryFunctionProps) {
-    super(scope, id, { package: 'filemanager-api', ...props });
+    super(scope, id, { package: 'filemanager-query-lambda', ...props });
   }
 }
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
index 1512080cb..cb4a9af49 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
@@ -1,13 +1,17 @@
 import { Construct } from 'constructs';
-import { EventSourceProps, IngestFunction } from '../constructs/functions/ingest';
+import { IngestFunction } from '../constructs/functions/ingest';
 import { MigrateFunction } from '../constructs/functions/migrate';
-import * as fn from '../constructs/functions/function';
+import { ObjectsQueryFunction } from '../constructs/functions/query';
 import { DatabaseProps } from '../constructs/functions/function';
 import { Vpc, SecurityGroup, VpcLookupOptions } from 'aws-cdk-lib/aws-ec2';
 import { Arn, Stack, StackProps } from 'aws-cdk-lib';
 import { StringParameter } from 'aws-cdk-lib/aws-ssm';
 import { ProviderFunction } from '../../../../../components/provider_function';
 import { Queue } from 'aws-cdk-lib/aws-sqs';
+import { HttpApi, HttpMethod } from 'aws-cdk-lib/aws-apigatewayv2';
+import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
+import { HttpLambdaIntegration } from 'aws-cdk-lib/aws-apigatewayv2-integrations';
+import { UserPool } from 'aws-cdk-lib/aws-cognito';
 
 export const FILEMANAGER_SERVICE_NAME = 'filemanager';
 
@@ -117,41 +121,37 @@ export class Filemanager extends Stack {
       buckets: props.eventSourceBuckets,
     });
 
-    let objectsQuery = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', {
-      vpc: props.vpc,
-      databaseSecret: props.databaseSecret,
-      databaseSecurityGroup: props.databaseSecurityGroup,
-      buildEnvironment: props?.buildEnvironment,
-      rustLog: props?.rustLog, 
+    let objectsQueryLambda = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', {
+      vpc: vpc,
+      host: host,
+      port: props.port,
+      securityGroup: lambdaSecurityGroup
     });
 
-    // Add an authorizer if auth is required.
-    let authorizer = undefined;
-    if (!settings.jwtAuthorizer.public) {
-      // If the cog user pool id is not specified, create a new one.
-      if (settings.jwtAuthorizer.cogUserPoolId === undefined) {
-        const pool = new UserPool(this, "userPool", {
-          userPoolName: "HtsgetRsUserPool",
-        });
-        settings.jwtAuthorizer.cogUserPoolId = pool.userPoolId;
-      }
-
-      authorizer = new HttpJwtAuthorizer(
-        id + "HtsgetAuthorizer",
-        `https://cognito-idp.${this.region}.amazonaws.com/${settings.jwtAuthorizer.cogUserPoolId}`,
+    const ObjectsQueryFunctionIntegration = new HttpLambdaIntegration(
+      "FilemanagerQueryApiIntegration",
+      objectsQueryLambda.function
+    );
+
+    const pool = new UserPool(this, "userPool", {
+      userPoolName: "OrcaBusUserPool",
+    });
+
+    // JWT authorizer
+    const authorizer = new HttpJwtAuthorizer(
+        id + "FilemanagerQueryApiAuthorizer",
+        `https://cognito-idp.${this.region}.amazonaws.com/`,
         {
-          identitySource: ["$request.header.Authorization"],
-          jwtAudience: settings.jwtAuthorizer.jwtAudience ?? [],
+          identitySource: ["meow"], //["$request.header.Authorization"],
+          jwtAudience: ["aud"], // FIXME!!!
         },
       );
-    }    
-    // API Gateway v2 endpoints for querying data
-    const api = new HttpApi(this, 'FileManagerAPI');
 
-    const ObjectsQueryFunctionIntegration = new HttpLambdaIntegration(
-      id + "FilemanagerIntegration",
-      objectsQuery.function
-    );
+    // API Gateway v2 endpoints for querying data
+    const api = new HttpApi(this, 'FileManagerQueryApi', {
+      defaultAuthorizer: authorizer,
+      defaultIntegration: ObjectsQueryFunctionIntegration,
+    });
 
     // Add a route to the API
     api.addRoutes({

From ccce5b5a79c967814cc4b86024ac458654ef8f80 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 22 Apr 2024 13:47:14 +1000
Subject: [PATCH 15/31] Remove SRM from api-gateway construct, promote it to
 (hopefully reusable) component level

---
 lib/workload/components/api-gateway/index.ts | 81 ++++++++++++++++++++
 1 file changed, 81 insertions(+)
 create mode 100644 lib/workload/components/api-gateway/index.ts

diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
new file mode 100644
index 000000000..70b15107b
--- /dev/null
+++ b/lib/workload/components/api-gateway/index.ts
@@ -0,0 +1,81 @@
+import { Construct } from 'constructs';
+import { aws_ssm, Duration } from 'aws-cdk-lib';
+import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
+import { CorsHttpMethod, HttpApi } from 'aws-cdk-lib/aws-apigatewayv2';
+import { IStringParameter } from 'aws-cdk-lib/aws-ssm';
+
+export interface ApiGatewayConstructProps {
+  region: string;
+  cognitoUserPoolIdParameterName: string;
+  cognitoPortalAppClientIdParameterName: string;
+  cognitoStatusPageAppClientIdParameterName: string;
+}
+
+export class ApiGatewayConstruct extends Construct {
+  private readonly _httpApi: HttpApi;
+
+  constructor(scope: Construct, id: string, props: ApiGatewayConstructProps) {
+    super(scope, id);
+
+    this._httpApi = new HttpApi(this, 'HttpApi', {
+      apiName: 'OrcaBusAPI-${service}', // FIXME: Props this from construct user
+      corsPreflight: {
+        allowHeaders: ['Authorization'],
+        allowMethods: [
+          CorsHttpMethod.GET,
+          CorsHttpMethod.HEAD,
+          CorsHttpMethod.OPTIONS,
+          CorsHttpMethod.POST,
+        ],
+        allowOrigins: ['*'], // FIXME allowed origins from config constant
+        maxAge: Duration.days(10),
+      },
+      defaultAuthorizer: this.getAuthorizer(props),
+      // defaultDomainMapping: ... TODO
+    });
+
+    // TODO Configure access logging. See https://github.com/aws/aws-cdk/issues/11100
+
+    // TODO setup cloud map service discovery perhaps
+  }
+
+  private getAuthorizer(props: ApiGatewayConstructProps): HttpJwtAuthorizer {
+    /**
+     * FIXME One fine day in future when we have proper Cognito AAI setup.
+     *  For the moment, we leverage Portal and established Cognito infrastructure.
+     *  See https://github.com/umccr/orcabus/issues/102
+     *
+     * UI clients:
+     *  https://portal.[dev|stg|prod].umccr.org
+     *  https://status.[dev|stg|prod].umccr.org
+     */
+
+    const userPoolIdParam: IStringParameter = aws_ssm.StringParameter.fromStringParameterName(
+      this,
+      'CognitoUserPoolIdParameter',
+      props.cognitoUserPoolIdParameterName
+    );
+    const portalClientIdParam: IStringParameter = aws_ssm.StringParameter.fromStringParameterName(
+      this,
+      'CognitoPortalClientIdParameter',
+      props.cognitoPortalAppClientIdParameterName
+    );
+    const statusPageClientIdParam: IStringParameter =
+      aws_ssm.StringParameter.fromStringParameterName(
+        this,
+        'CognitoStatusPageClientIdParameter',
+        props.cognitoStatusPageAppClientIdParameterName
+      );
+
+    const issuer =
+      'https://cognito-idp.' + props.region + '.amazonaws.com/' + userPoolIdParam.stringValue;
+
+    return new HttpJwtAuthorizer('PortalAuthorizer', issuer, {
+      jwtAudience: [portalClientIdParam.stringValue, statusPageClientIdParam.stringValue],
+    });
+  }
+
+  get httpApi(): HttpApi {
+    return this._httpApi;
+  }
+}

From cd9c0814a2f5f7b76ef278d61462686731f51a52 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 22 Apr 2024 13:58:00 +1000
Subject: [PATCH 16/31] Point SRM to the new higher level api-gateway
 construct. Fix some confusing README phrasing.

---
 .../sequence-run-manager/deploy/README.md     |  2 +-
 .../deploy/constructs/api-gw/index.ts         | 81 -------------------
 .../sequence-run-manager/deploy/stack.ts      |  4 +-
 3 files changed, 3 insertions(+), 84 deletions(-)
 delete mode 100644 lib/workload/stateless/stacks/sequence-run-manager/deploy/constructs/api-gw/index.ts

diff --git a/lib/workload/stateless/stacks/sequence-run-manager/deploy/README.md b/lib/workload/stateless/stacks/sequence-run-manager/deploy/README.md
index 17f5907d7..8d5577fdb 100644
--- a/lib/workload/stateless/stacks/sequence-run-manager/deploy/README.md
+++ b/lib/workload/stateless/stacks/sequence-run-manager/deploy/README.md
@@ -2,7 +2,7 @@
 
 This directory contains CDK code that will be called and assembled by higher level class such as `lib/workload/stateless/statelessStackCollectionClass.ts`.
 
-Collectively, all CDK constructs created under this `deploy` directory forms as **one deployable stack**. Hence, just single `stack.ts` file might be sufficed if your app deployment is simple.
+Collectively, all CDK constructs created under this `deploy` directory forms as **one deployable stack**. Hence, just  a single `stack.ts` file should suffice if your app deployment is simple.
 
 ## TL;DR
 
diff --git a/lib/workload/stateless/stacks/sequence-run-manager/deploy/constructs/api-gw/index.ts b/lib/workload/stateless/stacks/sequence-run-manager/deploy/constructs/api-gw/index.ts
deleted file mode 100644
index 15a0d55d7..000000000
--- a/lib/workload/stateless/stacks/sequence-run-manager/deploy/constructs/api-gw/index.ts
+++ /dev/null
@@ -1,81 +0,0 @@
-import { Construct } from 'constructs';
-import { aws_ssm, Duration } from 'aws-cdk-lib';
-import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
-import { CorsHttpMethod, HttpApi } from 'aws-cdk-lib/aws-apigatewayv2';
-import { IStringParameter } from 'aws-cdk-lib/aws-ssm';
-
-export interface SRMApiGatewayConstructProps {
-  region: string;
-  cognitoUserPoolIdParameterName: string;
-  cognitoPortalAppClientIdParameterName: string;
-  cognitoStatusPageAppClientIdParameterName: string;
-}
-
-export class SRMApiGatewayConstruct extends Construct {
-  private readonly _httpApi: HttpApi;
-
-  constructor(scope: Construct, id: string, props: SRMApiGatewayConstructProps) {
-    super(scope, id);
-
-    this._httpApi = new HttpApi(this, 'HttpApi', {
-      apiName: 'OrcaBusAPI-SequenceRunManager',
-      corsPreflight: {
-        allowHeaders: ['Authorization'],
-        allowMethods: [
-          CorsHttpMethod.GET,
-          CorsHttpMethod.HEAD,
-          CorsHttpMethod.OPTIONS,
-          CorsHttpMethod.POST,
-        ],
-        allowOrigins: ['*'], // FIXME allowed origins from config constant
-        maxAge: Duration.days(10),
-      },
-      defaultAuthorizer: this.getAuthorizer(props),
-      // defaultDomainMapping: ... TODO
-    });
-
-    // TODO Configure access logging. See https://github.com/aws/aws-cdk/issues/11100
-
-    // TODO setup cloud map service discovery perhaps
-  }
-
-  private getAuthorizer(props: SRMApiGatewayConstructProps): HttpJwtAuthorizer {
-    /**
-     * FIXME One fine day in future when we have proper Cognito AAI setup.
-     *  For the moment, we leverage Portal and established Cognito infrastructure.
-     *  See https://github.com/umccr/orcabus/issues/102
-     *
-     * UI clients:
-     *  https://portal.[dev|stg|prod].umccr.org
-     *  https://status.[dev|stg|prod].umccr.org
-     */
-
-    const userPoolIdParam: IStringParameter = aws_ssm.StringParameter.fromStringParameterName(
-      this,
-      'CognitoUserPoolIdParameter',
-      props.cognitoUserPoolIdParameterName
-    );
-    const portalClientIdParam: IStringParameter = aws_ssm.StringParameter.fromStringParameterName(
-      this,
-      'CognitoPortalClientIdParameter',
-      props.cognitoPortalAppClientIdParameterName
-    );
-    const statusPageClientIdParam: IStringParameter =
-      aws_ssm.StringParameter.fromStringParameterName(
-        this,
-        'CognitoStatusPageClientIdParameter',
-        props.cognitoStatusPageAppClientIdParameterName
-      );
-
-    const issuer =
-      'https://cognito-idp.' + props.region + '.amazonaws.com/' + userPoolIdParam.stringValue;
-
-    return new HttpJwtAuthorizer('PortalAuthorizer', issuer, {
-      jwtAudience: [portalClientIdParam.stringValue, statusPageClientIdParam.stringValue],
-    });
-  }
-
-  get httpApi(): HttpApi {
-    return this._httpApi;
-  }
-}
diff --git a/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts b/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts
index 0a4ec4ee0..ae5c3fc37 100644
--- a/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts
@@ -8,7 +8,7 @@ import { PythonFunction, PythonLayerVersion } from '@aws-cdk/aws-lambda-python-a
 import { HttpLambdaIntegration } from 'aws-cdk-lib/aws-apigatewayv2-integrations';
 import { HttpMethod, HttpRoute, HttpRouteKey } from 'aws-cdk-lib/aws-apigatewayv2';
 import { ManagedPolicy, Role, ServicePrincipal } from 'aws-cdk-lib/aws-iam';
-import { SRMApiGatewayConstruct } from './constructs/api-gw';
+import { ApiGatewayConstruct } from '../../../../components/api-gateway';
 import { Architecture } from 'aws-cdk-lib/aws-lambda';
 import { PostgresManagerStack } from '../../postgres-manager/deploy/stack';
 
@@ -111,7 +111,7 @@ export class SequenceRunManagerStack extends Stack {
       timeout: Duration.seconds(28),
     });
 
-    const srmApi = new SRMApiGatewayConstruct(this, 'SRMApiGatewayConstruct', {
+    const srmApi = new ApiGatewayConstruct(this, 'SRMApiGatewayConstruct', {
       region: this.region,
       ...props,
     });

From bf62137cc477c113c4934165bab8883ffcd69697 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 22 Apr 2024 15:28:38 +1000
Subject: [PATCH 17/31] Refactor filemanager stack with new api-gw construct,
 follow some of the SRM stack structure

---
 config/stacks/fileManager.ts                  |   2 +-
 config/stacks/postgresManager.ts              |   2 +-
 lib/workload/components/api-gateway/index.ts  |   2 +-
 .../deploy/constructs/functions/function.ts   |   2 +-
 .../filemanager/deploy/lib/filemanager.ts     | 163 ------------------
 .../stacks/filemanager/deploy/stack.ts        | 112 ++++++++++++
 .../statelessStackCollectionClass.ts          |   2 +-
 7 files changed, 117 insertions(+), 168 deletions(-)
 delete mode 100644 lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
 create mode 100644 lib/workload/stateless/stacks/filemanager/deploy/stack.ts

diff --git a/config/stacks/fileManager.ts b/config/stacks/fileManager.ts
index 5a6d96e47..ae1fede99 100644
--- a/config/stacks/fileManager.ts
+++ b/config/stacks/fileManager.ts
@@ -1,4 +1,4 @@
-import { FilemanagerConfig } from '../../lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager';
+import { FilemanagerConfig } from '../../lib/workload/stateless/stacks/filemanager/deploy/stack';
 import {
   AccountName,
   computeSecurityGroupName,
diff --git a/config/stacks/postgresManager.ts b/config/stacks/postgresManager.ts
index ea163e9b4..095a021c6 100644
--- a/config/stacks/postgresManager.ts
+++ b/config/stacks/postgresManager.ts
@@ -1,5 +1,5 @@
 import { Duration } from 'aws-cdk-lib';
-import { FILEMANAGER_SERVICE_NAME } from '../../lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager';
+import { FILEMANAGER_SERVICE_NAME } from '../../lib/workload/stateless/stacks/filemanager/deploy/stack';
 import { PostgresManagerStackProps } from '../../lib/workload/stateless/stacks/postgres-manager/deploy/stack';
 import { DbAuthType } from '../../lib/workload/stateless/stacks/postgres-manager/function/type';
 import {
diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
index 70b15107b..87b0d5daf 100644
--- a/lib/workload/components/api-gateway/index.ts
+++ b/lib/workload/components/api-gateway/index.ts
@@ -18,7 +18,7 @@ export class ApiGatewayConstruct extends Construct {
     super(scope, id);
 
     this._httpApi = new HttpApi(this, 'HttpApi', {
-      apiName: 'OrcaBusAPI-${service}', // FIXME: Props this from construct user
+      apiName: 'OrcaBusAPI-${id}',
       corsPreflight: {
         allowHeaders: ['Authorization'],
         allowMethods: [
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts
index ae8a42829..52f7cd89d 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts
@@ -9,7 +9,7 @@ import { exec } from 'cargo-lambda-cdk/lib/util';
 import { randomUUID } from 'node:crypto';
 import { print } from 'aws-cdk/lib/logging';
 import { PostgresManagerStack } from '../../../../postgres-manager/deploy/stack';
-import { FILEMANAGER_SERVICE_NAME } from '../../lib/filemanager';
+import { FILEMANAGER_SERVICE_NAME } from '../../stack';
 
 /**
  * Properties for the database.
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
deleted file mode 100644
index cb4a9af49..000000000
--- a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
+++ /dev/null
@@ -1,163 +0,0 @@
-import { Construct } from 'constructs';
-import { IngestFunction } from '../constructs/functions/ingest';
-import { MigrateFunction } from '../constructs/functions/migrate';
-import { ObjectsQueryFunction } from '../constructs/functions/query';
-import { DatabaseProps } from '../constructs/functions/function';
-import { Vpc, SecurityGroup, VpcLookupOptions } from 'aws-cdk-lib/aws-ec2';
-import { Arn, Stack, StackProps } from 'aws-cdk-lib';
-import { StringParameter } from 'aws-cdk-lib/aws-ssm';
-import { ProviderFunction } from '../../../../../components/provider_function';
-import { Queue } from 'aws-cdk-lib/aws-sqs';
-import { HttpApi, HttpMethod } from 'aws-cdk-lib/aws-apigatewayv2';
-import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
-import { HttpLambdaIntegration } from 'aws-cdk-lib/aws-apigatewayv2-integrations';
-import { UserPool } from 'aws-cdk-lib/aws-cognito';
-
-export const FILEMANAGER_SERVICE_NAME = 'filemanager';
-
-/**
- * Stateful config for filemanager.
- */
-export type FilemanagerConfig = Omit<DatabaseProps, 'host' | 'securityGroup'> & {
-  /**
-   * Queue name used by the EventSource construct.
-   */
-  eventSourceQueueName: string;
-  /**
-   * Buckets defined by the EventSource construct.
-   */
-  eventSourceBuckets: string[];
-  /**
-   * The parameter name that contains the database cluster endpoint.
-   */
-  databaseClusterEndpointHostParameter: string;
-  /**
-   * The parameter name that contains the database cluster endpoint.
-   */
-  vpcProps: VpcLookupOptions;
-  /**
-   * Whether to initialize a database migration.
-   */
-  migrateDatabase?: boolean;
-  /**
-   * The security group name to be attached to lambdas. 
-   */
-  securityGroupName: string;
-}
-
-/**
- * Props for the filemanager stack.
- */
-export type FilemanagerProps = StackProps & FilemanagerConfig;
-
-/**
- * JWT authorization settings.
- */
-export type FilemanagerJwtAuthSettings = {
-  /**
-   * The JWT audience.
-   */
-  jwtAudience?: string[];
-
-  /**
-   * The cognito user pool id for the authorizer. If this is not set, then a new user pool is created.
-   */
-  cogUserPoolId?: string;
-};
-
-/**
- * Construct used to configure the filemanager.
- */
-export class Filemanager extends Stack {
-  constructor(scope: Construct, id: string, props: FilemanagerProps) {
-    super(scope, id, props);
-
-    const vpc = Vpc.fromLookup(this, 'MainVpc', props.vpcProps);
-
-    const lambdaSecurityGroup = SecurityGroup.fromLookupByName(
-      this,
-      'OrcaBusLambdaSecurityGroup',
-      props.securityGroupName,
-      vpc
-    );
-
-    const host = StringParameter.valueForStringParameter(
-      this,
-      props.databaseClusterEndpointHostParameter
-    );
-
-    if (props?.migrateDatabase) {
-      const migrateFunction = new MigrateFunction(this, 'MigrateFunction', {
-        vpc: vpc,
-        host: host,
-        port: props.port,
-        securityGroup: lambdaSecurityGroup,
-      });
-
-      new ProviderFunction(this, 'MigrateProviderFunction', {
-        vpc: vpc,
-        function: migrateFunction.function,
-      });
-    }
-
-    const queue = Queue.fromQueueArn(
-      this,
-      'FilemanagerQueue',
-      Arn.format(
-        {
-          resource: props.eventSourceQueueName,
-          service: 'sqs',
-        },
-        this
-      )
-    );
-
-    new IngestFunction(this, 'IngestLambda', {
-      vpc: vpc,
-      host: host,
-      port: props.port,
-      securityGroup: lambdaSecurityGroup,
-      eventSources: [queue],
-      buckets: props.eventSourceBuckets,
-    });
-
-    let objectsQueryLambda = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', {
-      vpc: vpc,
-      host: host,
-      port: props.port,
-      securityGroup: lambdaSecurityGroup
-    });
-
-    const ObjectsQueryFunctionIntegration = new HttpLambdaIntegration(
-      "FilemanagerQueryApiIntegration",
-      objectsQueryLambda.function
-    );
-
-    const pool = new UserPool(this, "userPool", {
-      userPoolName: "OrcaBusUserPool",
-    });
-
-    // JWT authorizer
-    const authorizer = new HttpJwtAuthorizer(
-        id + "FilemanagerQueryApiAuthorizer",
-        `https://cognito-idp.${this.region}.amazonaws.com/`,
-        {
-          identitySource: ["meow"], //["$request.header.Authorization"],
-          jwtAudience: ["aud"], // FIXME!!!
-        },
-      );
-
-    // API Gateway v2 endpoints for querying data
-    const api = new HttpApi(this, 'FileManagerQueryApi', {
-      defaultAuthorizer: authorizer,
-      defaultIntegration: ObjectsQueryFunctionIntegration,
-    });
-
-    // Add a route to the API
-    api.addRoutes({
-      path: '/objects/{:id}',
-      methods: [HttpMethod.GET],
-      integration: ObjectsQueryFunctionIntegration,
-    });
-  }
-}
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
new file mode 100644
index 000000000..8bf14b735
--- /dev/null
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -0,0 +1,112 @@
+import { Construct } from 'constructs';
+import { IngestFunction } from './constructs/functions/ingest';
+import { MigrateFunction } from './constructs/functions/migrate';
+import { ObjectsQueryFunction } from './constructs/functions/query';
+import { DatabaseProps } from './constructs/functions/function';
+import { Vpc, SecurityGroup, VpcLookupOptions } from 'aws-cdk-lib/aws-ec2';
+import { Arn, Stack, StackProps } from 'aws-cdk-lib';
+import { StringParameter } from 'aws-cdk-lib/aws-ssm';
+import { ProviderFunction } from '../../../../components/provider_function';
+import { ApiGatewayConstruct } from '../../../../components/api-gateway';
+import { Queue } from 'aws-cdk-lib/aws-sqs';
+import { HttpMethod, HttpRoute, HttpRouteKey } from 'aws-cdk-lib/aws-apigatewayv2';
+import { HttpLambdaIntegration } from 'aws-cdk-lib/aws-apigatewayv2-integrations';
+
+export const FILEMANAGER_SERVICE_NAME = 'filemanager';
+
+/**
+ * Stateful config for filemanager.
+ */
+export type FilemanagerConfig = Omit<DatabaseProps, 'host' | 'securityGroup'> & {
+  eventSourceQueueName: string;
+  eventSourceBuckets: string[];
+  databaseClusterEndpointHostParameter: string;
+  vpcProps: VpcLookupOptions;
+  migrateDatabase?: boolean;
+  securityGroupName: string;
+  cognitoUserPoolIdParameterName: string;
+  cognitoPortalAppClientIdParameterName: string;
+  cognitoStatusPageAppClientIdParameterName: string;
+}
+
+/**
+ * Props for the filemanager stack.
+ */
+export type FilemanagerProps = StackProps & FilemanagerConfig;
+
+/**
+ * Construct used to configure the filemanager.
+ */
+export class Filemanager extends Stack {
+  constructor(scope: Construct, id: string, props: FilemanagerProps) {
+    super(scope, id, props);
+
+    const vpc = Vpc.fromLookup(this, 'MainVpc', props.vpcProps);
+
+    const lambdaSecurityGroup = SecurityGroup.fromLookupByName(
+      this,
+      'OrcaBusLambdaSecurityGroup',
+      props.securityGroupName,
+      vpc
+    );
+
+    const host = StringParameter.valueForStringParameter(
+      this,
+      props.databaseClusterEndpointHostParameter
+    );
+
+    if (props?.migrateDatabase) {
+      const migrateFunction = new MigrateFunction(this, 'MigrateFunction', {
+        vpc: vpc,
+        host: host,
+        port: props.port,
+        securityGroup: lambdaSecurityGroup,
+      });
+
+      new ProviderFunction(this, 'MigrateProviderFunction', {
+        vpc: vpc,
+        function: migrateFunction.function,
+      });
+    }
+
+    const queue = Queue.fromQueueArn(
+      this,
+      'FilemanagerQueue',
+      Arn.format(
+        {
+          resource: props.eventSourceQueueName,
+          service: 'sqs',
+        },
+        this
+      )
+    );
+
+    this.createIngestFunction(props);
+    this.createQueryFunction(props);
+  }
+
+  /// Lambda function definitions and surrounding infra
+  // Ingest function
+  private createIngestFunction(props: FilemanagerProps) {
+    new IngestFunction(this, 'IngestFunction', props);
+  };
+
+  // Api Gateway fronting filemanager's query lambda
+  private createQueryFunction(props: FilemanagerProps) {
+    let objectsQueryLambda = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', props);
+
+    const ApiGateway = new ApiGatewayConstruct(this, 'ApiGatewayConstruct-'+props.stackName, {
+      region: this.region,
+      ...props,
+    });
+    const httpApi = ApiGateway.httpApi;
+
+    const apiIntegration = new HttpLambdaIntegration('ApiIntegration', objectsQueryLambda.function);
+
+    new HttpRoute(this, 'HttpRoute', { // FIXME: Should not be just proxy but objects/{:id}
+      httpApi: httpApi,
+      integration: apiIntegration,
+      routeKey: HttpRouteKey.with('/{proxy+}', HttpMethod.ANY),
+    });
+  }
+}
diff --git a/lib/workload/stateless/statelessStackCollectionClass.ts b/lib/workload/stateless/statelessStackCollectionClass.ts
index 862c7688f..c5574b0ab 100644
--- a/lib/workload/stateless/statelessStackCollectionClass.ts
+++ b/lib/workload/stateless/statelessStackCollectionClass.ts
@@ -1,7 +1,7 @@
 import { Construct } from 'constructs';
 import { Stack, Environment, StackProps } from 'aws-cdk-lib';
 
-import { FilemanagerProps, Filemanager } from './stacks/filemanager/deploy/lib/filemanager';
+import { FilemanagerProps, Filemanager } from './stacks/filemanager/deploy/stack';
 import {
   PostgresManagerStack,
   PostgresManagerStackProps,

From 6e533ce659a61fa45a8cc2638ffc6d59b822cae9 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 22 Apr 2024 16:30:13 +1000
Subject: [PATCH 18/31] Discussion with Marko on harmonizing the Props and
 stack structure (taking SRM as the model).

Co-authored-by: Marko Malenic <mmalenic1@gmail.com>
---
 config/stacks/fileManager.ts                  |  6 +++
 .../stacks/filemanager/deploy/stack.ts        | 49 +++++++++++++------
 2 files changed, 39 insertions(+), 16 deletions(-)

diff --git a/config/stacks/fileManager.ts b/config/stacks/fileManager.ts
index ae1fede99..f85431ebf 100644
--- a/config/stacks/fileManager.ts
+++ b/config/stacks/fileManager.ts
@@ -9,6 +9,9 @@ import {
   prodBucket,
   stgBucket,
   vpcProps,
+  cognitoPortalAppClientIdParameterName,
+  cognitoStatusPageAppClientIdParameterName,
+  cognitoUserPoolIdParameterName,
 } from '../constants';
 
 export const getFileManagerStackProps = (n: AccountName): FilemanagerConfig => {
@@ -19,6 +22,9 @@ export const getFileManagerStackProps = (n: AccountName): FilemanagerConfig => {
     databaseClusterEndpointHostParameter: dbClusterEndpointHostParameterName,
     port: databasePort,
     migrateDatabase: true,
+    cognitoPortalAppClientIdParameterName: cognitoPortalAppClientIdParameterName,
+    cognitoStatusPageAppClientIdParameterName: cognitoStatusPageAppClientIdParameterName,
+    cognitoUserPoolIdParameterName: cognitoUserPoolIdParameterName,
   };
 
   switch (n) {
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
index 8bf14b735..cd3819a12 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -1,14 +1,14 @@
 import { Construct } from 'constructs';
-import { IngestFunction } from './constructs/functions/ingest';
+import { IngestFunction, IngestFunctionProps } from './constructs/functions/ingest';
 import { MigrateFunction } from './constructs/functions/migrate';
 import { ObjectsQueryFunction } from './constructs/functions/query';
 import { DatabaseProps } from './constructs/functions/function';
-import { Vpc, SecurityGroup, VpcLookupOptions } from 'aws-cdk-lib/aws-ec2';
+import { Vpc, SecurityGroup, VpcLookupOptions, IVpc, ISecurityGroup } from 'aws-cdk-lib/aws-ec2';
 import { Arn, Stack, StackProps } from 'aws-cdk-lib';
 import { StringParameter } from 'aws-cdk-lib/aws-ssm';
 import { ProviderFunction } from '../../../../components/provider_function';
 import { ApiGatewayConstruct } from '../../../../components/api-gateway';
-import { Queue } from 'aws-cdk-lib/aws-sqs';
+import { IQueue, Queue } from 'aws-cdk-lib/aws-sqs';
 import { HttpMethod, HttpRoute, HttpRouteKey } from 'aws-cdk-lib/aws-apigatewayv2';
 import { HttpLambdaIntegration } from 'aws-cdk-lib/aws-apigatewayv2-integrations';
 
@@ -38,38 +38,43 @@ export type FilemanagerProps = StackProps & FilemanagerConfig;
  * Construct used to configure the filemanager.
  */
 export class Filemanager extends Stack {
+  private readonly vpc: IVpc;
+  private readonly host: string;
+  private readonly securityGroup: ISecurityGroup;
+  private readonly queue: IQueue;
+  
   constructor(scope: Construct, id: string, props: FilemanagerProps) {
     super(scope, id, props);
 
-    const vpc = Vpc.fromLookup(this, 'MainVpc', props.vpcProps);
+    this.vpc = Vpc.fromLookup(this, 'MainVpc', props.vpcProps);
 
-    const lambdaSecurityGroup = SecurityGroup.fromLookupByName(
+    this.securityGroup = SecurityGroup.fromLookupByName(
       this,
       'OrcaBusLambdaSecurityGroup',
       props.securityGroupName,
-      vpc
+      this.vpc
     );
 
-    const host = StringParameter.valueForStringParameter(
+    this.host = StringParameter.valueForStringParameter(
       this,
       props.databaseClusterEndpointHostParameter
     );
 
     if (props?.migrateDatabase) {
       const migrateFunction = new MigrateFunction(this, 'MigrateFunction', {
-        vpc: vpc,
-        host: host,
+        vpc: this.vpc,
+        host: this.host,
         port: props.port,
-        securityGroup: lambdaSecurityGroup,
+        securityGroup: this.securityGroup,
       });
 
       new ProviderFunction(this, 'MigrateProviderFunction', {
-        vpc: vpc,
+        vpc: this.vpc,
         function: migrateFunction.function,
       });
     }
 
-    const queue = Queue.fromQueueArn(
+    this.queue = Queue.fromQueueArn(
       this,
       'FilemanagerQueue',
       Arn.format(
@@ -88,12 +93,24 @@ export class Filemanager extends Stack {
   /// Lambda function definitions and surrounding infra
   // Ingest function
   private createIngestFunction(props: FilemanagerProps) {
-    new IngestFunction(this, 'IngestFunction', props);
-  };
+    return new IngestFunction(this, 'IngestFunction', {
+      vpc: this.vpc,
+      host: this.host,
+      securityGroup: this.securityGroup,
+      eventSources: [this.queue],
+      buckets: props.eventSourceBuckets,
+      ...props
+    });
+  }
 
-  // Api Gateway fronting filemanager's query lambda
+  // Query function and API Gateway fronting the function
   private createQueryFunction(props: FilemanagerProps) {
-    let objectsQueryLambda = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', props);
+    let objectsQueryLambda = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', {
+      vpc: this.vpc,
+      host: this.host,
+      securityGroup: this.securityGroup,
+      ...props
+    });
 
     const ApiGateway = new ApiGatewayConstruct(this, 'ApiGatewayConstruct-'+props.stackName, {
       region: this.region,

From e3c90f9ce02b999ca5eef1679276e67c6454d831 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Tue, 23 Apr 2024 10:47:38 +1000
Subject: [PATCH 19/31] Merge

---
 lib/workload/stateless/stacks/filemanager/deploy/stack.ts | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
index cd3819a12..43b196027 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -1,12 +1,12 @@
 import { Construct } from 'constructs';
-import { IngestFunction, IngestFunctionProps } from './constructs/functions/ingest';
+import { IngestFunction } from './constructs/functions/ingest';
 import { MigrateFunction } from './constructs/functions/migrate';
 import { ObjectsQueryFunction } from './constructs/functions/query';
 import { DatabaseProps } from './constructs/functions/function';
 import { Vpc, SecurityGroup, VpcLookupOptions, IVpc, ISecurityGroup } from 'aws-cdk-lib/aws-ec2';
 import { Arn, Stack, StackProps } from 'aws-cdk-lib';
 import { StringParameter } from 'aws-cdk-lib/aws-ssm';
-import { ProviderFunction } from '../../../../components/provider_function';
+import { ProviderFunction } from '../../../../../components/provider-function';
 import { ApiGatewayConstruct } from '../../../../components/api-gateway';
 import { IQueue, Queue } from 'aws-cdk-lib/aws-sqs';
 import { HttpMethod, HttpRoute, HttpRouteKey } from 'aws-cdk-lib/aws-apigatewayv2';

From 326cbeca8a3b360c94b0c0b1aa8445edd720659e Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Tue, 23 Apr 2024 10:48:38 +1000
Subject: [PATCH 20/31] Fix provider function new import

---
 lib/workload/stateless/stacks/filemanager/deploy/stack.ts | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
index 43b196027..3ed00eb9c 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -6,7 +6,7 @@ import { DatabaseProps } from './constructs/functions/function';
 import { Vpc, SecurityGroup, VpcLookupOptions, IVpc, ISecurityGroup } from 'aws-cdk-lib/aws-ec2';
 import { Arn, Stack, StackProps } from 'aws-cdk-lib';
 import { StringParameter } from 'aws-cdk-lib/aws-ssm';
-import { ProviderFunction } from '../../../../../components/provider-function';
+import { ProviderFunction } from '../../../../components/provider-function';
 import { ApiGatewayConstruct } from '../../../../components/api-gateway';
 import { IQueue, Queue } from 'aws-cdk-lib/aws-sqs';
 import { HttpMethod, HttpRoute, HttpRouteKey } from 'aws-cdk-lib/aws-apigatewayv2';

From f406dcd4a4cede7d6ce4080a05b9f4e60c8fb0a0 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Tue, 23 Apr 2024 11:18:11 +1000
Subject: [PATCH 21/31] Bad merge?

---
 .../filemanager/database/migrations/0001_add_object_table.sql | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql b/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql
index 10525d206..293bedda3 100644
--- a/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql
+++ b/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql
@@ -4,4 +4,8 @@ create table object (
     object_id uuid not null primary key,
     -- Attributes for a group of objects.
     attributes jsonb default null
+    -- The unique id for this object group.
+    object_id uuid not null primary key,
+    -- Attributes for a group of objects.
+    attributes jsonb default null
 );

From 3345460e435f7f5234ea5205d3241051806fa447 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Tue, 23 Apr 2024 12:32:49 +1000
Subject: [PATCH 22/31] Revert "Bad merge?"

This reverts commit f406dcd4a4cede7d6ce4080a05b9f4e60c8fb0a0.
---
 .../filemanager/database/migrations/0001_add_object_table.sql | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql b/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql
index 293bedda3..10525d206 100644
--- a/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql
+++ b/lib/workload/stateless/stacks/filemanager/database/migrations/0001_add_object_table.sql
@@ -4,8 +4,4 @@ create table object (
     object_id uuid not null primary key,
     -- Attributes for a group of objects.
     attributes jsonb default null
-    -- The unique id for this object group.
-    object_id uuid not null primary key,
-    -- Attributes for a group of objects.
-    attributes jsonb default null
 );

From b4a18daa730ccb5682c9a72f9191a87f7fb345d2 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Tue, 23 Apr 2024 12:36:04 +1000
Subject: [PATCH 23/31] Make TODO stand out, more ripgrep-friendly

---
 .../stacks/filemanager/deploy/constructs/functions/function.ts  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts
index 51d3ee770..cc1f5c470 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/function.ts
@@ -129,7 +129,7 @@ export class Function extends Construct {
       functionName: props.functionName,
     });
 
-    // Todo this should probably connect to an RDS proxy rather than directly to the database.
+    // TODO: this should probably connect to an RDS proxy rather than directly to the database.
   }
 
   /**

From 19f801174ad9d3a2c43fc126bb762b9ecddb44e8 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 11:05:48 +1000
Subject: [PATCH 24/31] Pass correct package (filemanager-api) to stack to
 match query function Cargo.toml name, first successful stub deploy. Need to
 refactor/eliminate lib/filemanager.ts in favor of stack.ts, too many sites to
 edit when adding a new function, thus error-prone /cc @mmalenic

---
 .../filemanager/deploy/constructs/functions/query.ts       | 4 ++--
 .../stateless/stacks/filemanager/deploy/lib/filemanager.ts | 7 +++++++
 lib/workload/stateless/stacks/filemanager/deploy/stack.ts  | 4 ++--
 3 files changed, 11 insertions(+), 4 deletions(-)

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts
index 7118e71fd..9d3ae056c 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/constructs/functions/query.ts
@@ -10,8 +10,8 @@ export type ObjectsQueryFunctionProps = fn.FunctionPropsNoPackage & DatabaseProp
 /**
  * A construct for the Lambda query function.
  */
-export class ObjectsQueryFunction extends fn.Function {
+export class QueryFunction extends fn.Function {
   constructor(scope: Construct, id: string, props: ObjectsQueryFunctionProps) {
-    super(scope, id, { package: 'filemanager-query-lambda', ...props });
+    super(scope, id, { package: 'filemanager-api', ...props });
   }
 }
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
index ab3643fd0..6d81df4c3 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
@@ -1,6 +1,7 @@
 import { Construct } from 'constructs';
 import { IngestFunction } from '../constructs/functions/ingest';
 import { MigrateFunction } from '../constructs/functions/migrate';
+import { QueryFunction } from '../constructs/functions/query';
 import { DatabaseProps } from '../constructs/functions/function';
 import { Vpc, SecurityGroup, VpcLookupOptions } from 'aws-cdk-lib/aws-ec2';
 import { Arn, Stack, StackProps } from 'aws-cdk-lib';
@@ -100,6 +101,12 @@ export class Filemanager extends Stack {
       eventSources: [queue],
       buckets: props.eventSourceBuckets,
     });
+    new QueryFunction(this, 'QueryLambda', {
+      vpc: vpc,
+      host: host,
+      port: props.port,
+      securityGroup: lambdaSecurityGroup
+    });
   }
 }
 
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
index 3ed00eb9c..03afcc6fd 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -1,7 +1,7 @@
 import { Construct } from 'constructs';
 import { IngestFunction } from './constructs/functions/ingest';
 import { MigrateFunction } from './constructs/functions/migrate';
-import { ObjectsQueryFunction } from './constructs/functions/query';
+import { QueryFunction } from './constructs/functions/query';
 import { DatabaseProps } from './constructs/functions/function';
 import { Vpc, SecurityGroup, VpcLookupOptions, IVpc, ISecurityGroup } from 'aws-cdk-lib/aws-ec2';
 import { Arn, Stack, StackProps } from 'aws-cdk-lib';
@@ -105,7 +105,7 @@ export class Filemanager extends Stack {
 
   // Query function and API Gateway fronting the function
   private createQueryFunction(props: FilemanagerProps) {
-    let objectsQueryLambda = new ObjectsQueryFunction(this, 'ObjectsQueryFunction', {
+    let objectsQueryLambda = new QueryFunction(this, 'ObjectsQueryFunction', {
       vpc: this.vpc,
       host: this.host,
       securityGroup: this.securityGroup,

From 343bd1f7d0efc53aeb61a3565f49440ef87d9c6f Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 13:24:43 +1000
Subject: [PATCH 25/31] Remove old stack

---
 .../filemanager/deploy/lib/filemanager.ts     | 112 ------------------
 1 file changed, 112 deletions(-)
 delete mode 100644 lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts b/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
deleted file mode 100644
index 6d81df4c3..000000000
--- a/lib/workload/stateless/stacks/filemanager/deploy/lib/filemanager.ts
+++ /dev/null
@@ -1,112 +0,0 @@
-import { Construct } from 'constructs';
-import { IngestFunction } from '../constructs/functions/ingest';
-import { MigrateFunction } from '../constructs/functions/migrate';
-import { QueryFunction } from '../constructs/functions/query';
-import { DatabaseProps } from '../constructs/functions/function';
-import { Vpc, SecurityGroup, VpcLookupOptions } from 'aws-cdk-lib/aws-ec2';
-import { Arn, Stack, StackProps } from 'aws-cdk-lib';
-import { StringParameter } from 'aws-cdk-lib/aws-ssm';
-import { ProviderFunction } from '../../../../../components/provider-function';
-import { Queue } from 'aws-cdk-lib/aws-sqs';
-
-export const FILEMANAGER_SERVICE_NAME = 'filemanager';
-
-/**
- * Stateful config for filemanager.
- */
-export type FilemanagerConfig = Omit<DatabaseProps, 'host' | 'securityGroup'> & {
-  /**
-   * Queue name used by the EventSource construct.
-   */
-  eventSourceQueueName: string;
-  /**
-   * Buckets defined by the EventSource construct.
-   */
-  eventSourceBuckets: string[];
-  /**
-   * The parameter name that contains the database cluster endpoint.
-   */
-  databaseClusterEndpointHostParameter: string;
-  /**
-   * The parameter name that contains the database cluster endpoint.
-   */
-  vpcProps: VpcLookupOptions;
-  /**
-   * Whether to initialize a database migration.
-   */
-  migrateDatabase?: boolean;
-  /**
-   * The security group name to be attached to lambdas. 
-   */
-  securityGroupName: string;
-}
-
-/**
- * Props for the filemanager stack.
- */
-export type FilemanagerProps = StackProps & FilemanagerConfig;
-
-/**
- * Construct used to configure the filemanager.
- */
-export class Filemanager extends Stack {
-  constructor(scope: Construct, id: string, props: FilemanagerProps) {
-    super(scope, id, props);
-
-    const vpc = Vpc.fromLookup(this, 'MainVpc', props.vpcProps);
-
-    const lambdaSecurityGroup = SecurityGroup.fromLookupByName(
-      this,
-      'OrcaBusLambdaSecurityGroup',
-      props.securityGroupName,
-      vpc
-    );
-
-    const host = StringParameter.valueForStringParameter(
-      this,
-      props.databaseClusterEndpointHostParameter
-    );
-
-    if (props?.migrateDatabase) {
-      const migrateFunction = new MigrateFunction(this, 'MigrateFunction', {
-        vpc: vpc,
-        host: host,
-        port: props.port,
-        securityGroup: lambdaSecurityGroup,
-      });
-
-      new ProviderFunction(this, 'MigrateProviderFunction', {
-        vpc: vpc,
-        function: migrateFunction.function,
-      });
-    }
-
-    const queue = Queue.fromQueueArn(
-      this,
-      'FilemanagerQueue',
-      Arn.format(
-        {
-          resource: props.eventSourceQueueName,
-          service: 'sqs',
-        },
-        this
-      )
-    );
-
-    new IngestFunction(this, 'IngestLambda', {
-      vpc: vpc,
-      host: host,
-      port: props.port,
-      securityGroup: lambdaSecurityGroup,
-      eventSources: [queue],
-      buckets: props.eventSourceBuckets,
-    });
-    new QueryFunction(this, 'QueryLambda', {
-      vpc: vpc,
-      host: host,
-      port: props.port,
-      securityGroup: lambdaSecurityGroup
-    });
-  }
-}
-

From 2c7a91d37e2f4d276a51f0c7e4a657d7d9d0284c Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 14:15:35 +1000
Subject: [PATCH 26/31] Fix id naming glitch with stack name, add access logs,
 explore CloudMap based on
 https://github.com/aws-samples/aws-cdk-service-discovery-example

---
 lib/workload/components/api-gateway/index.ts | 59 ++++++++++++++++++--
 1 file changed, 55 insertions(+), 4 deletions(-)

diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
index 87b0d5daf..beacd236e 100644
--- a/lib/workload/components/api-gateway/index.ts
+++ b/lib/workload/components/api-gateway/index.ts
@@ -1,8 +1,10 @@
 import { Construct } from 'constructs';
 import { aws_ssm, Duration } from 'aws-cdk-lib';
 import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
-import { CorsHttpMethod, HttpApi } from 'aws-cdk-lib/aws-apigatewayv2';
+import { CorsHttpMethod, HttpApi, CfnStage } from 'aws-cdk-lib/aws-apigatewayv2';
 import { IStringParameter } from 'aws-cdk-lib/aws-ssm';
+import { LogGroup } from 'aws-cdk-lib/aws-logs';
+import iam from 'aws-cdk-lib/aws-iam';
 
 export interface ApiGatewayConstructProps {
   region: string;
@@ -18,7 +20,7 @@ export class ApiGatewayConstruct extends Construct {
     super(scope, id);
 
     this._httpApi = new HttpApi(this, 'HttpApi', {
-      apiName: 'OrcaBusAPI-${id}',
+      apiName: 'OrcaBus-' + id,
       corsPreflight: {
         allowHeaders: ['Authorization'],
         allowMethods: [
@@ -34,9 +36,58 @@ export class ApiGatewayConstruct extends Construct {
       // defaultDomainMapping: ... TODO
     });
 
-    // TODO Configure access logging. See https://github.com/aws/aws-cdk/issues/11100
+    // LogGroups
+    this.setupAccessLogs();
 
-    // TODO setup cloud map service discovery perhaps
+    // CloudMap
+    // this.setupCloudServiceDiscovery()
+  }
+
+  // TODO: https://github.com/aws-samples/aws-cdk-service-discovery-example/tree/main
+  // private setupCloudServiceDiscovery() {
+  // }
+
+  // TODO: Taken from https://github.com/aws/aws-cdk/issues/11100#issuecomment-904627081
+  // Monitor for higher level CDK construct instead of leveraging CfnStage
+  private setupAccessLogs() {
+    const accessLogs = new LogGroup(this, 'OrcaBus-ApiGw-AccessLogs');
+    const stage = this.httpApi.defaultStage?.node.defaultChild as CfnStage;
+    stage.accessLogSettings = {
+      destinationArn: accessLogs.logGroupArn,
+      format: JSON.stringify({
+        requestId: '$context.requestId',
+        userAgent: '$context.identity.userAgent',
+        sourceIp: '$context.identity.sourceIp',
+        requestTime: '$context.requestTime',
+        requestTimeEpoch: '$context.requestTimeEpoch',
+        httpMethod: '$context.httpMethod',
+        path: '$context.path',
+        status: '$context.status',
+        protocol: '$context.protocol',
+        responseLength: '$context.responseLength',
+        domainName: '$context.domainName',
+      }),
+    };
+
+    const role = new iam.Role(this, 'ApiGWLogWriterRole', {
+      assumedBy: new iam.ServicePrincipal('apigateway.amazonaws.com'),
+    });
+
+    const policy = new iam.PolicyStatement({
+      actions: [
+        'logs:CreateLogGroup',
+        'logs:CreateLogStream',
+        'logs:DescribeLogGroups',
+        'logs:DescribeLogStreams',
+        'logs:PutLogEvents',
+        'logs:GetLogEvents',
+        'logs:FilterLogEvents',
+      ],
+      resources: ['*'],
+    });
+
+    role.addToPolicy(policy);
+    accessLogs.grantWrite(role);
   }
 
   private getAuthorizer(props: ApiGatewayConstructProps): HttpJwtAuthorizer {

From 11f972d17646648205b01b750bc311206ed684ed Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 14:27:05 +1000
Subject: [PATCH 27/31] Substitute custom policy/role for a managed one:
 https://docs.aws.amazon.com/aws-managed-policy/latest/reference/AmazonAPIGatewayPushToCloudWatchLogs.html

---
 lib/workload/components/api-gateway/index.ts | 19 ++-----------------
 1 file changed, 2 insertions(+), 17 deletions(-)

diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
index beacd236e..1e6158014 100644
--- a/lib/workload/components/api-gateway/index.ts
+++ b/lib/workload/components/api-gateway/index.ts
@@ -69,25 +69,10 @@ export class ApiGatewayConstruct extends Construct {
       }),
     };
 
-    const role = new iam.Role(this, 'ApiGWLogWriterRole', {
+    // Allow writing access logs, managed
+    new iam.Role(this, 'AmazonAPIGatewayPushToCloudWatchLogs', {
       assumedBy: new iam.ServicePrincipal('apigateway.amazonaws.com'),
     });
-
-    const policy = new iam.PolicyStatement({
-      actions: [
-        'logs:CreateLogGroup',
-        'logs:CreateLogStream',
-        'logs:DescribeLogGroups',
-        'logs:DescribeLogStreams',
-        'logs:PutLogEvents',
-        'logs:GetLogEvents',
-        'logs:FilterLogEvents',
-      ],
-      resources: ['*'],
-    });
-
-    role.addToPolicy(policy);
-    accessLogs.grantWrite(role);
   }
 
   private getAuthorizer(props: ApiGatewayConstructProps): HttpJwtAuthorizer {

From 6088bf531961e503083dca1e0ce3b67160416026 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 14:35:55 +1000
Subject: [PATCH 28/31] Bizarre TS import rules... was getting 'Cannot read
 properties of undefined (reading 'Role')'...

---
 lib/workload/components/api-gateway/index.ts | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
index 1e6158014..67284b716 100644
--- a/lib/workload/components/api-gateway/index.ts
+++ b/lib/workload/components/api-gateway/index.ts
@@ -4,7 +4,7 @@ import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
 import { CorsHttpMethod, HttpApi, CfnStage } from 'aws-cdk-lib/aws-apigatewayv2';
 import { IStringParameter } from 'aws-cdk-lib/aws-ssm';
 import { LogGroup } from 'aws-cdk-lib/aws-logs';
-import iam from 'aws-cdk-lib/aws-iam';
+import { Role, ServicePrincipal } from 'aws-cdk-lib/aws-iam';
 
 export interface ApiGatewayConstructProps {
   region: string;
@@ -70,9 +70,11 @@ export class ApiGatewayConstruct extends Construct {
     };
 
     // Allow writing access logs, managed
-    new iam.Role(this, 'AmazonAPIGatewayPushToCloudWatchLogs', {
-      assumedBy: new iam.ServicePrincipal('apigateway.amazonaws.com'),
+    const role = new Role(this, 'AmazonAPIGatewayPushToCloudWatchLogs', {
+      assumedBy: new ServicePrincipal('apigateway.amazonaws.com'),
     });
+
+    accessLogs.grantWrite(role);
   }
 
   private getAuthorizer(props: ApiGatewayConstructProps): HttpJwtAuthorizer {

From 01a1c4d65e1ca78fd09fc2b5d77c0f0a5e82c82d Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 14:40:39 +1000
Subject: [PATCH 29/31] Respect OrcaBusAPI prefix as observed in other
 u-services

---
 lib/workload/components/api-gateway/index.ts | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
index 67284b716..6dd0a4a4b 100644
--- a/lib/workload/components/api-gateway/index.ts
+++ b/lib/workload/components/api-gateway/index.ts
@@ -20,7 +20,7 @@ export class ApiGatewayConstruct extends Construct {
     super(scope, id);
 
     this._httpApi = new HttpApi(this, 'HttpApi', {
-      apiName: 'OrcaBus-' + id,
+      apiName: 'OrcaBusAPI-' + id,
       corsPreflight: {
         allowHeaders: ['Authorization'],
         allowMethods: [

From 82211afe029112f3e5f09448c8814e0f1737dc5b Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Fri, 26 Apr 2024 15:32:49 +1000
Subject: [PATCH 30/31] Fix API GW construct for metadata-manager

---
 .../stacks/filemanager/deploy/stack.ts        |  2 +-
 .../deploy/construct/api-gw/index.ts          | 75 -------------------
 .../stacks/metadata-manager/deploy/stack.ts   | 12 ++-
 3 files changed, 10 insertions(+), 79 deletions(-)
 delete mode 100644 lib/workload/stateless/stacks/metadata-manager/deploy/construct/api-gw/index.ts

diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
index 03afcc6fd..f3ea6f5e4 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -112,7 +112,7 @@ export class Filemanager extends Stack {
       ...props
     });
 
-    const ApiGateway = new ApiGatewayConstruct(this, 'ApiGatewayConstruct-'+props.stackName, {
+    const ApiGateway = new ApiGatewayConstruct(this, 'ApiGateway-'+props.stackName, {
       region: this.region,
       ...props,
     });
diff --git a/lib/workload/stateless/stacks/metadata-manager/deploy/construct/api-gw/index.ts b/lib/workload/stateless/stacks/metadata-manager/deploy/construct/api-gw/index.ts
deleted file mode 100644
index aded5178b..000000000
--- a/lib/workload/stateless/stacks/metadata-manager/deploy/construct/api-gw/index.ts
+++ /dev/null
@@ -1,75 +0,0 @@
-import { Construct } from 'constructs';
-import { aws_ssm, Duration } from 'aws-cdk-lib';
-import { HttpJwtAuthorizer } from 'aws-cdk-lib/aws-apigatewayv2-authorizers';
-import { CorsHttpMethod, HttpApi } from 'aws-cdk-lib/aws-apigatewayv2';
-import { IStringParameter } from 'aws-cdk-lib/aws-ssm';
-
-export class ApiGatewayConstruct extends Construct {
-  private readonly _httpApi: HttpApi;
-
-  constructor(scope: Construct, id: string) {
-    super(scope, id);
-
-    this._httpApi = new HttpApi(this, 'HttpApi', {
-      apiName: 'OrcaBusAPI-MetadataManager',
-      corsPreflight: {
-        allowHeaders: ['Authorization'],
-        allowMethods: [
-          CorsHttpMethod.GET,
-          CorsHttpMethod.HEAD,
-          CorsHttpMethod.OPTIONS,
-          CorsHttpMethod.POST,
-        ],
-        allowOrigins: ['*'], // FIXME allowed origins from config constant
-        maxAge: Duration.days(10),
-      },
-      defaultAuthorizer: this.getAuthorizer(id, 'ap-southeast-2'),
-      // defaultDomainMapping: ... TODO
-    });
-
-    // TODO Configure access logging. See https://github.com/aws/aws-cdk/issues/11100
-
-    // TODO setup cloud map service discovery perhaps
-  }
-
-  private getAuthorizer(id: string, region: string): HttpJwtAuthorizer {
-    /**
-     * FIXME One fine day in future when we have proper Cognito AAI setup.
-     *  For the moment, we leverage Portal and established Cognito infrastructure.
-     *  See https://github.com/umccr/orcabus/issues/102
-     */
-
-    // i.e. JWT from UI client https://status.[dev|stg|prod].umccr.org
-    const SSM_USER_POOL_ID: string = '/data_portal/client/cog_user_pool_id';
-    const SSM_PORTAL_CLIENT_ID: string = '/data_portal/client/data2/cog_app_client_id_stage';
-    const SSM_STATUS_PAGE_CLIENT_ID: string = '/data_portal/status_page/cog_app_client_id_stage';
-
-    const userPoolIdParam: IStringParameter = aws_ssm.StringParameter.fromStringParameterName(
-      this,
-      'CognitoUserPoolIdParameter',
-      SSM_USER_POOL_ID
-    );
-    const portalClientIdParam: IStringParameter = aws_ssm.StringParameter.fromStringParameterName(
-      this,
-      'CognitoPortalClientIdParameter',
-      SSM_PORTAL_CLIENT_ID
-    );
-    const statusPageClientIdParam: IStringParameter =
-      aws_ssm.StringParameter.fromStringParameterName(
-        this,
-        'CognitoStatusPageClientIdParameter',
-        SSM_STATUS_PAGE_CLIENT_ID
-      );
-
-    const issuer =
-      'https://cognito-idp.' + region + '.amazonaws.com/' + userPoolIdParam.stringValue;
-
-    return new HttpJwtAuthorizer('PortalAuthorizer', issuer, {
-      jwtAudience: [portalClientIdParam.stringValue, statusPageClientIdParam.stringValue],
-    });
-  }
-
-  get httpApi(): HttpApi {
-    return this._httpApi;
-  }
-}
diff --git a/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts b/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts
index 8004c4dfe..4670c5069 100644
--- a/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts
@@ -10,7 +10,7 @@ import { Code, Runtime, Architecture, LayerVersion } from 'aws-cdk-lib/aws-lambd
 import { LambdaSyncGsheetConstruct } from './construct/lambda-sync-gsheet';
 import { LambdaMigrationConstruct } from './construct/lambda-migration';
 import { LambdaAPIConstruct } from './construct/lambda-api';
-import { ApiGatewayConstruct } from './construct/api-gw';
+import { ApiGatewayConstruct } from '../../../../components/api-gateway';
 import { PostgresManagerStack } from '../../postgres-manager/deploy/stack';
 
 export type MetadataManagerStackProps = {
@@ -80,11 +80,17 @@ export class MetadataManagerStack extends Stack {
     // 3. To sync db with external sources (e.g. metadata in gsheet)
 
     // (1)
-    const apiGW = new ApiGatewayConstruct(this, 'APIGW').httpApi;
+    const apiGW = new ApiGatewayConstruct(this, 'OrcabusAPI-MetadataManager', {
+      region: this.region,
+      cognitoUserPoolIdParameterName: 'YOUR_USER_POOL_ID_PARAMETER_NAME',
+      cognitoPortalAppClientIdParameterName: 'YOUR_PORTAL_APP_CLIENT_ID_PARAMETER_NAME',
+      cognitoStatusPageAppClientIdParameterName: 'YOUR_STATUS_PAGE_APP_CLIENT_ID_PARAMETER_NAME',
+      ...props,
+    });
     new LambdaAPIConstruct(this, 'APILambda', {
       basicLambdaConfig: basicLambdaConfig,
       dbConnectionSecret: dbSecret,
-      apiGW: apiGW,
+      apiGW: apiGW.httpApi,
     });
 
     // (2)

From 78724e06b6b58333613ba0e7346cc3b8b21fc0d7 Mon Sep 17 00:00:00 2001
From: Roman Valls Guimera <brainstorm@users.noreply.github.com>
Date: Mon, 29 Apr 2024 14:02:29 +1000
Subject: [PATCH 31/31] Address @victorskl's PR review feedback

---
 lib/workload/components/api-gateway/index.ts                   | 3 ++-
 lib/workload/stateless/stacks/filemanager/deploy/stack.ts      | 3 ++-
 lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts | 1 +
 .../stateless/stacks/sequence-run-manager/deploy/stack.ts      | 3 ++-
 4 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/lib/workload/components/api-gateway/index.ts b/lib/workload/components/api-gateway/index.ts
index 6dd0a4a4b..20180cf91 100644
--- a/lib/workload/components/api-gateway/index.ts
+++ b/lib/workload/components/api-gateway/index.ts
@@ -8,6 +8,7 @@ import { Role, ServicePrincipal } from 'aws-cdk-lib/aws-iam';
 
 export interface ApiGatewayConstructProps {
   region: string;
+  apiName: string | undefined;
   cognitoUserPoolIdParameterName: string;
   cognitoPortalAppClientIdParameterName: string;
   cognitoStatusPageAppClientIdParameterName: string;
@@ -20,7 +21,7 @@ export class ApiGatewayConstruct extends Construct {
     super(scope, id);
 
     this._httpApi = new HttpApi(this, 'HttpApi', {
-      apiName: 'OrcaBusAPI-' + id,
+      apiName: 'OrcaBusAPI-' + props.apiName,
       corsPreflight: {
         allowHeaders: ['Authorization'],
         allowMethods: [
diff --git a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
index f3ea6f5e4..6b679d3e0 100644
--- a/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/filemanager/deploy/stack.ts
@@ -112,8 +112,9 @@ export class Filemanager extends Stack {
       ...props
     });
 
-    const ApiGateway = new ApiGatewayConstruct(this, 'ApiGateway-'+props.stackName, {
+    const ApiGateway = new ApiGatewayConstruct(this, 'ApiGateway', {
       region: this.region,
+      apiName: props.stackName,
       ...props,
     });
     const httpApi = ApiGateway.httpApi;
diff --git a/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts b/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts
index 4670c5069..1022f2641 100644
--- a/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/metadata-manager/deploy/stack.ts
@@ -82,6 +82,7 @@ export class MetadataManagerStack extends Stack {
     // (1)
     const apiGW = new ApiGatewayConstruct(this, 'OrcabusAPI-MetadataManager', {
       region: this.region,
+      apiName: 'MetadataManager',
       cognitoUserPoolIdParameterName: 'YOUR_USER_POOL_ID_PARAMETER_NAME',
       cognitoPortalAppClientIdParameterName: 'YOUR_PORTAL_APP_CLIENT_ID_PARAMETER_NAME',
       cognitoStatusPageAppClientIdParameterName: 'YOUR_STATUS_PAGE_APP_CLIENT_ID_PARAMETER_NAME',
diff --git a/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts b/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts
index ae5c3fc37..3f97ff6aa 100644
--- a/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts
+++ b/lib/workload/stateless/stacks/sequence-run-manager/deploy/stack.ts
@@ -111,8 +111,9 @@ export class SequenceRunManagerStack extends Stack {
       timeout: Duration.seconds(28),
     });
 
-    const srmApi = new ApiGatewayConstruct(this, 'SRMApiGatewayConstruct', {
+    const srmApi = new ApiGatewayConstruct(this, 'ApiGateway', {
       region: this.region,
+      apiName: 'SequenceRunManager',
       ...props,
     });
     const httpApi = srmApi.httpApi;