diff --git a/conf/modules.config b/conf/modules.config
index 0dc483aa..893880b5 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -57,7 +57,7 @@ process {
 
                 if (fp.equals('versions.yml')) {
                     return null
-                } else if (fp.matches('output/.*.pcgr_acmg.grch38.html')) {
+                } else if (fp.matches('output/.*.pcgr.grch38.html')) {
                     return "${meta.key}/${meta.tumor_id}.pcgr.html"
                 } else {
                     def fp_out = fp.replaceFirst(/output\//, '')
diff --git a/conf/refdata.config b/conf/refdata.config
index 6bef3738..c03d9095 100644
--- a/conf/refdata.config
+++ b/conf/refdata.config
@@ -4,7 +4,7 @@ params {
         umccr_reference_data = '2--0'
         hmf_reference_data = 'hmf_pipeline_resources.38_v2.2.0--3'
 
-        pcgr = '20220203'
+        pcgr = '20250314'
         snpeff = '5_1'
 
         oncokb = '4.12'
@@ -20,7 +20,8 @@ params {
     }
 
     miscdata_paths {
-        pcgr_dir = "databases/pcgr/v${params.data_versions.pcgr}/"
+        pcgr_dir = "databases/pcgr/${params.data_versions.pcgr}/"
+        vep_dir = "databases/pcgr/VEP/"
         snpeff_dir = "databases/snpeff/v${params.data_versions.snpeff}/"
 
         oncokb_genes = "databases/oncokb/v${params.data_versions.oncokb}/cancerGeneList.txt"
diff --git a/modules/local/bolt/other/multiqc_report/main.nf b/modules/local/bolt/other/multiqc_report/main.nf
index f26d6921..5c0d7484 100644
--- a/modules/local/bolt/other/multiqc_report/main.nf
+++ b/modules/local/bolt/other/multiqc_report/main.nf
@@ -2,7 +2,7 @@ process BOLT_OTHER_MULTIQC_REPORT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17-multiqc'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3-multiqc'
 
     input:
     tuple val(meta), path(input_files)
diff --git a/modules/local/bolt/other/purple_baf_plot/main.nf b/modules/local/bolt/other/purple_baf_plot/main.nf
index c52d8202..894cff5f 100644
--- a/modules/local/bolt/other/purple_baf_plot/main.nf
+++ b/modules/local/bolt/other/purple_baf_plot/main.nf
@@ -2,7 +2,7 @@ process BOLT_OTHER_PURPLE_BAF_PLOT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17-circos'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3-circos'
 
     input:
     tuple val(meta), path(purple_dir)
diff --git a/modules/local/bolt/smlv_germline/prepare/main.nf b/modules/local/bolt/smlv_germline/prepare/main.nf
index 2fc3cc4a..a63078b7 100644
--- a/modules/local/bolt/smlv_germline/prepare/main.nf
+++ b/modules/local/bolt/smlv_germline/prepare/main.nf
@@ -2,7 +2,7 @@ process BOLT_SMLV_GERMLINE_PREPARE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(smlv_vcf)
diff --git a/modules/local/bolt/smlv_germline/report/main.nf b/modules/local/bolt/smlv_germline/report/main.nf
index 3f5fdea9..1ef72a02 100644
--- a/modules/local/bolt/smlv_germline/report/main.nf
+++ b/modules/local/bolt/smlv_germline/report/main.nf
@@ -2,12 +2,13 @@ process BOLT_SMLV_GERMLINE_REPORT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17-pcgr'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3-pcgr'
 
     input:
     tuple val(meta), path(smlv_vcf), path(smlv_unfiltered_vcf)
     path germline_predisposition_panel_genes
     path pcgr_data_dir
+    path vep_dir
 
     output:
     tuple val(meta), path("output/*.variant_counts_type.yaml"), emit: counts_type
@@ -32,6 +33,7 @@ process BOLT_SMLV_GERMLINE_REPORT {
         --pcgrr_conda pcgrr \\
         --germline_panel_list_fp ${germline_predisposition_panel_genes} \\
         --pcgr_data_dir ${pcgr_data_dir} \\
+        --vep_dir ${vep_dir} \\
         --threads ${task.cpus} \\
         --output_dir output/
 
diff --git a/modules/local/bolt/smlv_somatic/annotate/main.nf b/modules/local/bolt/smlv_somatic/annotate/main.nf
index d28aeeb4..558024a7 100644
--- a/modules/local/bolt/smlv_somatic/annotate/main.nf
+++ b/modules/local/bolt/smlv_somatic/annotate/main.nf
@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_ANNOTATE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17-pcgr'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3-pcgr'
 
     input:
     tuple val(meta), path(smlv_vcf)
@@ -10,6 +10,7 @@ process BOLT_SMLV_SOMATIC_ANNOTATE {
     path annotations_dir
     path pon_dir
     path pcgr_data_dir
+    path vep_dir
 
     output:
     tuple val(meta), path("output/${meta.tumor_id}.annotations.vcf.gz"), emit: vcf
@@ -30,6 +31,7 @@ process BOLT_SMLV_SOMATIC_ANNOTATE {
         --annotations_dir ${annotations_dir} \\
         --pon_dir ${pon_dir} \\
         --pcgr_data_dir ${pcgr_data_dir} \\
+        --vep_dir ${vep_dir} \\
         --pcgr_conda pcgr \\
         --pcgrr_conda pcgrr \\
         --threads ${task.cpus} \\
diff --git a/modules/local/bolt/smlv_somatic/filter/main.nf b/modules/local/bolt/smlv_somatic/filter/main.nf
index 93519a82..36c75035 100644
--- a/modules/local/bolt/smlv_somatic/filter/main.nf
+++ b/modules/local/bolt/smlv_somatic/filter/main.nf
@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_FILTER {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(smlv_vcf)
diff --git a/modules/local/bolt/smlv_somatic/report/main.nf b/modules/local/bolt/smlv_somatic/report/main.nf
index cbc160c1..14b2fcc4 100644
--- a/modules/local/bolt/smlv_somatic/report/main.nf
+++ b/modules/local/bolt/smlv_somatic/report/main.nf
@@ -2,11 +2,12 @@ process BOLT_SMLV_SOMATIC_REPORT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17-pcgr'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3-pcgr'
 
     input:
     tuple val(meta), path(smlv_vcf), path(smlv_filters_vcf), path(smlv_dragen_vcf), path(purple_purity)
     path pcgr_data_dir
+    path vep_dir
     path somatic_driver_panel_regions_coding
     path giab_regions
     path genome_fasta
@@ -19,7 +20,7 @@ process BOLT_SMLV_SOMATIC_REPORT {
     tuple val(meta), path("output/*.variant_counts_type.yaml")   , emit: counts_type
     tuple val(meta), path("output/*.variant_counts_process.json"), emit: counts_process
     path 'output/pcgr/'                                          , emit: pcgr_dir
-    path "output/*.pcgr_acmg.grch38.html"                        , emit: pcgr_report
+    path "output/*.pcgr.grch38.html"                        , emit: pcgr_report
     path 'versions.yml'                                          , emit: versions
 
     when:
@@ -40,6 +41,7 @@ process BOLT_SMLV_SOMATIC_REPORT {
         --pcgr_conda pcgr \\
         --pcgrr_conda pcgrr \\
         --pcgr_data_dir ${pcgr_data_dir} \\
+        --vep_dir ${vep_dir} \\
         --purple_purity_fp ${purple_purity} \\
         \\
         --cancer_genes_fp ${somatic_driver_panel_regions_coding} \\
@@ -49,7 +51,7 @@ process BOLT_SMLV_SOMATIC_REPORT {
         --threads ${task.cpus} \\
         --output_dir output/
 
-    mv output/pcgr/${meta.tumor_id}.pcgr_acmg.grch38.html output/
+    mv output/pcgr/${meta.tumor_id}.pcgr.grch38.html output/
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
@@ -66,7 +68,7 @@ process BOLT_SMLV_SOMATIC_REPORT {
     touch output/${meta.tumor_id}.somatic.variant_counts_type.yaml
     touch output/${meta.tumor_id}.somatic.variant_counts_process.json
     touch output/${meta.tumor_id}.somatic.bcftools_stats.txt
-    touch output/${meta.tumor_id}.pcgr_acmg.grch38.html
+    touch output/${meta.tumor_id}.pcgr.grch38.html
     echo -e '${task.process}:\\n  stub: noversions\\n' > versions.yml
     """
 }
diff --git a/modules/local/bolt/smlv_somatic/rescue/main.nf b/modules/local/bolt/smlv_somatic/rescue/main.nf
index 2e1ac64b..d53841c4 100644
--- a/modules/local/bolt/smlv_somatic/rescue/main.nf
+++ b/modules/local/bolt/smlv_somatic/rescue/main.nf
@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_RESCUE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(smlv_vcf), path(smlv_tbi), path(sage_smlv_vcf), path(sage_smlv_tbi)
diff --git a/modules/local/bolt/sv_somatic/annotate/main.nf b/modules/local/bolt/sv_somatic/annotate/main.nf
index af48b4f5..198b0c34 100644
--- a/modules/local/bolt/sv_somatic/annotate/main.nf
+++ b/modules/local/bolt/sv_somatic/annotate/main.nf
@@ -2,7 +2,7 @@ process BOLT_SV_SOMATIC_ANNOTATE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17-snpeff'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3-snpeff'
 
     input:
     tuple val(meta), path(sv_vcf), path(cnv_tsv)
diff --git a/modules/local/bolt/sv_somatic/prioritise/main.nf b/modules/local/bolt/sv_somatic/prioritise/main.nf
index 710cb192..6f919f14 100644
--- a/modules/local/bolt/sv_somatic/prioritise/main.nf
+++ b/modules/local/bolt/sv_somatic/prioritise/main.nf
@@ -2,7 +2,7 @@ process BOLT_SV_SOMATIC_PRIORITISE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.2.17'
+    container 'ghcr.io/umccr/bolt:0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(sv_vcf)
diff --git a/workflows/sash.nf b/workflows/sash.nf
index ca44efce..2d265fac 100644
--- a/workflows/sash.nf
+++ b/workflows/sash.nf
@@ -152,6 +152,7 @@ workflow SASH {
         umccr_data.annotations_dir,
         misc_data.pon_dir,
         misc_data.pcgr_dir,
+        misc_data.vep_dir
     )
 
     ch_versions = ch_versions.mix(BOLT_SMLV_SOMATIC_ANNOTATE.out.versions)
@@ -304,6 +305,7 @@ workflow SASH {
     BOLT_SMLV_SOMATIC_REPORT(
         ch_smlv_somatic_report_inputs,
         misc_data.pcgr_dir,
+        misc_data.vep_dir,
         umccr_data.somatic_panel_regions_cds,
         hmf_data.sage_highconf_regions,
         genome.fasta,
@@ -330,6 +332,7 @@ workflow SASH {
         ch_smlv_germline_report_inputs,
         umccr_data.germline_panel_genes,
         misc_data.pcgr_dir,
+        misc_data.vep_dir
     )
 
     ch_versions = ch_versions.mix(BOLT_SMLV_GERMLINE_REPORT.out.versions)