diff --git a/.bumpversion.cfg b/.bumpversion.cfg index a887efd..1daedd9 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.0.4 +current_version = 0.1.0 commit = True [bumpversion:file:DESCRIPTION] diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml index 428c21f..14f113a 100644 --- a/.github/workflows/deploy.yaml +++ b/.github/workflows/deploy.yaml @@ -9,7 +9,7 @@ env: recipe_path: conda/recipe env_yaml_path: conda/env/yaml env_lock_path: conda/env/lock - VERSION: '0.0.4' # versioned by bump2version + VERSION: '0.1.0' # versioned by bump2version GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }} jobs: @@ -36,10 +36,8 @@ jobs: - name: 🐍 Conda pkg build and upload run: | conda activate - mamba create --name cbuildenv conda-build conda-verify anaconda-client boa dvc dvc-gdrive + mamba create --name cbuildenv conda-build conda-verify anaconda-client boa conda activate cbuildenv - dvc pull - ls -l inst/extdata/* conda mambabuild --R 4.1 ${recipe_path} --token ${atoken} - name: 🔒 Conda lock run: | diff --git a/DESCRIPTION b/DESCRIPTION index cc28572..2e13794 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: sigrap Title: Wrappers for somatic mutation signature analysis tools -Version: 0.0.4 +Version: 0.1.0 Description: Wraps functionality from somatic signature analysis tools. Authors@R: person(given = "Peter", diff --git a/NEWS.md b/NEWS.md index 19690d5..cbcabf3 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,11 @@ # sigrap dev +# sigrap 0.1.0 (2022-06-10) + +- :star: Add Docker support ([pr6](https://github.com/umccr/sigrap/pull/6)). +- :star: Add conda-lock support ([pr6](https://github.com/umccr/sigrap/pull/6)). +- :star: Modularise CLI + # sigrap 0.0.4 (2022-06-07) - :star: Update to `{signature.tools.lib}` v2.1.2 diff --git a/README.Rmd b/README.Rmd index 8a348b1..eed57c9 100644 --- a/README.Rmd +++ b/README.Rmd @@ -75,7 +75,7 @@ sigrap_cli=$(Rscript -e 'x = system.file("cli", package = "sigrap"); cat(x, "\n" export PATH="${sigrap_cli}:${PATH}" echo "$ sigrap.R --version" -echo "sigrap.R 0.0.4" +echo "sigrap.R 0.1.0" echo "" echo "$ sigrap.R --help" sigrap.R --help diff --git a/README.md b/README.md index 9a37ee1..90ee0b8 100644 --- a/README.md +++ b/README.md @@ -73,7 +73,7 @@ export PATH="${sigrap_cli}:${PATH}" ``` $ sigrap.R --version - sigrap.R 0.0.4 + sigrap.R 0.1.0 $ sigrap.R --help usage: sigrap [-h] [-v] {hrdetect,chord,mutpat} ... diff --git a/conda/env/yaml/sigrap.yaml b/conda/env/yaml/sigrap.yaml index f488684..6f6bbf9 100644 --- a/conda/env/yaml/sigrap.yaml +++ b/conda/env/yaml/sigrap.yaml @@ -6,4 +6,4 @@ channels: - bioconda dependencies: - - r-sigrap ==0.0.4 # versioned by bump2version + - r-sigrap ==0.1.0 # versioned by bump2version diff --git a/conda/recipe/meta.yaml b/conda/recipe/meta.yaml index 774c191..2880b18 100644 --- a/conda/recipe/meta.yaml +++ b/conda/recipe/meta.yaml @@ -1,6 +1,6 @@ package: name: r-sigrap - version: 0.0.4 # bump2version + version: 0.1.0 # bump2version source: path: ../..