diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml index a21aaaa..3706e0f 100644 --- a/.github/workflows/deploy.yaml +++ b/.github/workflows/deploy.yaml @@ -4,7 +4,7 @@ on: push: branches: - main - - gha-test + - docker_update env: atoken: ${{ secrets.ANACONDA_UPLOAD_TOKEN }} recipe_path: conda/recipe diff --git a/inst/cli/chord.R b/inst/cli/chord.R index e59e187..3d39e68 100644 --- a/inst/cli/chord.R +++ b/inst/cli/chord.R @@ -8,6 +8,8 @@ chord_add_args <- function(subp) { chord_parse_args <- function(args) { cli::cli_h1("Started running CHORD!") + # CHORD requires this to be loaded... + suppressPackageStartupMessages(library("BSgenome.Hsapiens.UCSC.hg38")) res <- sigrap::chord_run( vcf.snv = args$snv, vcf.sv = args$sv, sample.name = args$sample, outpath = args$out