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Galaxy-Au-training-material.yaml
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---
destination:
description: Data files for Galaxy Australia training materials
name: Galaxy Australia Training Material
synopsis: Data files for all of the Galaxy Australia training tutorials in various sub folders.
type: library
items:
- name: Assembly
description: "Training data files for the various assembly tutorials"
items:
- name: Microbial Assembly
description: "Training data files for the Microbial Assembly tutorial"
items:
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/mutant_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/mutant_R2.fastq
- name: Annotation
description: "Training data files for the Annotation tutorials"
items:
- name: Microbial Annotation
description: "Training data files for the Microbial Annotation tutorial"
items:
- url: https://zenodo.org/record/582600/files/wildtype.fna
src: url
ext: fasta
info: https://zenodo.org/record/582600
- name: Variant Calling
description: "Training data files for the Variant Calling Tutorials"
items:
- name: Microbial Variant Calling
description: "Training data files for the Microbial Variant Calling Tutorial"
items:
- ext: fasta
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/wildtype.fna
- ext: genbank
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/wildtype.gbk
- ext: gff3
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/wildtype.gff
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/mutant_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.582600
src: url
url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/mutant_R2.fastq
- name: Human Variant Calling
description: "Training data files for the Human Variant Calling Tutorial"
items:
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1319858
src: url
url: https://zenodo.org/record/1319858/files/NA12878.GAIIx.exome_chr22.1E6reads.76bp.fastq
- name: RNA-Seq
description: "Training data files for the various RNA-Seq tutorials"
items:
- name: Microbial RNA-Seq
description: "Training data files for the Microbial RNA-Seq tutorial"
items:
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/E_coli_aMG1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/E_coli_aMG2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/E_coli_aMG3.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/E_coli_Lb1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/E_coli_Lb2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/E_coli_Lb3.fastq
- ext: fasta
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/Ecoli_k12.fasta
- ext: gtf
info: https://doi.org/10.5281/zenodo.1311269
src: url
url: https://zenodo.org/record/1311269/files/Ecoli_k12.gtf
- name: Fly RNA-Seq
description: "Training data files for the Fly RNA-Seq tutorial"
items:
- ext: gtf
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/ensembl_dm3.chr4.gtf
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/KO_01_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/KO_01_R2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/KO_02_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/KO_02_R2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/KO_03_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/KO_03_R2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/WT_01_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/WT_01_R2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/WT_02_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/WT_02_R2.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/WT_03_R1.fastq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1409427
src: url
url: https://zenodo.org/record/1409427/files/WT_03_R2.fastq
- name: Yeast RNA-Seq
description: "Training data files for the Yeast RNA-Seq tutorial"
items:
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/batch1_chrI_1.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/batch1_chrI_2.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/batch2_chrI_1.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/batch2_chrI_2.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/batch3_chrI_1.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/batch3_chrI_2.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/chem1_chrI_1.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/chem1_chrI_2.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/chem2_chrI_1.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/chem2_chrI_2.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/chem3_chrI_1.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/chem3_chrI_2.fastq
- ext: fastqsanger
src: url
url: https://swift.rc.nectar.org.au:8888/v1/AUTH_a3929895f9e94089ad042c9900e1ee82/RNAseqDGE_ADVNCD/genes.gtf
- name: Metagenomics
description: "Training data files for the various Metagenomics tutorials"
items:
- name: Marine 16S Metagenomics
description: "Training data files for the 16S Metagenomics tutorial"
items:
- ext: fasta
info: https://doi.org/10.5281/zenodo.1319864
src: url
url: https://zenodo.org/record/1319864/files/core_set_aligned.fasta
- ext: fasta
info: https://doi.org/10.5281/zenodo.1319864
src: url
url: https://zenodo.org/record/1319864/files/gold.fasta
- ext: fasta
info: https://doi.org/10.5281/zenodo.1319864
src: url
url: https://zenodo.org/record/1319864/files/seqs.fasta
- name: Soil 16S Metagenomics
description: "Traing data files for the Soil 16S Metagenomics tutorial with Mothur"
items:
- ext: fasta
info: https://doi.org/10.5281/zenodo.815875
src: url
url: https://zenodo.org/record/815875/files/SRR531818_pampa.fasta
- ext: fasta
info: https://doi.org/10.5281/zenodo.815875
src: url
url: https://zenodo.org/record/815875/files/SRR651839_anguil.fasta
- ext: fasta
info: https://doi.org/10.5281/zenodo.815875
src: url
url: https://zenodo.org/record/815875/files/silva.v4.fasta
- ext: fasta
info: https://doi.org/10.5281/zenodo.815875
src: url
url: https://zenodo.org/record/815875/files/trainset16_022016.pds.fasta
- ext: mothur.ref.taxonomy
info: https://doi.org/10.5281/zenodo.815875
src: url
url: https://zenodo.org/record/815875/files/trainset16_022016.pds.tax
- name: Sample Identification
description: "Training data files for the Sample Identification tutorial"
items:
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1319181
src: url
url: https://zenodo.org/record/1319181/files/ent_R1.fq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1319181
src: url
url: https://zenodo.org/record/1319181/files/ent_R2.fq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1319181
src: url
url: https://zenodo.org/record/1319181/files/staph_R1.fq
- ext: fastqsanger
info: https://doi.org/10.5281/zenodo.1319181
src: url
url: https://zenodo.org/record/1319181/files/staph_R2.fq