From 1801b92ec757920cb2a628113265e299d1a56b4f Mon Sep 17 00:00:00 2001
From: cat-bro <cathjb@gmail.com>
Date: Fri, 9 Feb 2024 13:28:06 +1100
Subject: [PATCH] Create tpv entry for filtlong

override shared db 50G mem allocation for filtlong, most jobs use far less than this
---
 .../production/total_perspective_vortex/tools.yml          | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
index e7fe1ebba..d41ba110b 100644
--- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
+++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
@@ -1301,6 +1301,13 @@ tools:
       if: input_size < 0.01
       cores: 1
       mem: 3.8
+  toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/.*:
+    mem: 12  # TODO: this overrides tpv shared entry giving 50G to each job. It could be changed to a linear function of input size
+    rules:
+    - id: filtlong_small_input_rule
+      if: input_size < 1
+      cores: 1
+      mem: 6
   toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/.*:
     cores: 5
     mem: 19.1