From ac70e8c97a2b28ce9a9519222c45b33417204249 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Fri, 9 Feb 2024 11:57:55 +1100 Subject: [PATCH] reduce fgenesh and allow maxquant to run on fgenesh VM This is temporary for the purpose of stopping the slurm cluster becoming blocked by medium sized jobs --- .../production/total_perspective_vortex/tools.yml | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index 3acc1b216..dd38e5122 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -981,6 +981,17 @@ tools: max_concurrent_job_count_for_tool_user: 2 cores: 16 mem: 61.4 + scheduling: + accept: + - pulsar + - pulsar-high-mem2 # TODO: Allowing pulsar-mel2 is temporary for crowd control on a busy day - this might not be a good spot for maxquant long term + rules: + - id: maxquant_singularity_rule + if: | + minimum_singularity_version = '2.0.3.0+galaxy0' + helpers.tool_version_gte(tool, minimum_singularity_version) + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant_mqpar/.*: cores: 16 mem: 61.4 @@ -3021,7 +3032,7 @@ tools: fail: Your account has not been given access to cellranger. Contact help@genome.edu.au if you think this is in error. ^fgenesh$: - cores: 120 + cores: 60 mem: 20 params: singularity_enabled: true