From 6ac67d2ad58cf57b95aff51f9609fb4b6e624296 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Tue, 6 Aug 2024 11:38:46 +1000 Subject: [PATCH 1/4] typo in URL --- tools/dorado/.shed.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools/dorado/.shed.yml b/tools/dorado/.shed.yml index 6015e875..1f898bd7 100644 --- a/tools/dorado/.shed.yml +++ b/tools/dorado/.shed.yml @@ -13,7 +13,7 @@ long_description: > Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads. name: dorado owner: galaxy-australia -remote_repository_url: https://github.com/usegalaxy-au/tools-au/tree/main/tools/dorado +remote_repository_url: https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado suite: name: suite_dorado description: > From 9d907dd381e808b8502332c644a65eaee9752ffa Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Tue, 6 Aug 2024 11:44:16 +1000 Subject: [PATCH 2/4] version bump --- tools/dorado/macros.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tools/dorado/macros.xml b/tools/dorado/macros.xml index d0ac08fb..0e270d91 100644 --- a/tools/dorado/macros.xml +++ b/tools/dorado/macros.xml @@ -1,7 +1,7 @@ - 0.7.2+9ac85c6 - 58b978562389bd0f1842601fb83cdf1eb2920218 + 0.7.3+6e6c45c + 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 nanoporetech/dorado:sha@CONTAINER_HASH@ From 63db769f22c6d77265bbe40119ce2a1b89b311b4 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Tue, 6 Aug 2024 11:50:02 +1000 Subject: [PATCH 3/4] update loc file --- .../dorado/tool-data/dorado_models.loc.sample | 118 +++++++++--------- 1 file changed, 59 insertions(+), 59 deletions(-) diff --git a/tools/dorado/tool-data/dorado_models.loc.sample b/tools/dorado/tool-data/dorado_models.loc.sample index 57207bbf..ba640150 100644 --- a/tools/dorado/tool-data/dorado_models.loc.sample +++ b/tools/dorado/tool-data/dorado_models.loc.sample @@ -1,59 +1,59 @@ -58b978562389bd0f1842601fb83cdf1eb2920218_dna_r10.4.1_e8.2_260bps_fast@v4.1.0 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+4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_rna004_130bps_hac@v5.0.0_pseU@v1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 rna004_130bps_hac@v5.0.0_pseU@v1 /models/rna004_130bps_hac@v5.0.0_pseU@v1 +4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_rna004_130bps_sup@v3.0.1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 rna004_130bps_sup@v3.0.1 /models/rna004_130bps_sup@v3.0.1 +4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 /models/rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 +4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_rna004_130bps_sup@v5.0.0 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 rna004_130bps_sup@v5.0.0 /models/rna004_130bps_sup@v5.0.0 +4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_rna004_130bps_sup@v5.0.0_m6A@v1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 rna004_130bps_sup@v5.0.0_m6A@v1 /models/rna004_130bps_sup@v5.0.0_m6A@v1 +4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_rna004_130bps_sup@v5.0.0_pseU@v1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 rna004_130bps_sup@v5.0.0_pseU@v1 /models/rna004_130bps_sup@v5.0.0_pseU@v1 From 1aa44f1717ed28ca23f5044b1bf77a542d35e0be Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Tue, 6 Aug 2024 11:50:23 +1000 Subject: [PATCH 4/4] readme --- tools/dorado/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools/dorado/README.md b/tools/dorado/README.md index 2cfa6f39..427a6374 100644 --- a/tools/dorado/README.md +++ b/tools/dorado/README.md @@ -43,6 +43,6 @@ The loc file doesn't have a header, so you can keep it sorted. cp tool-data/dorado_models.loc.sample \ tool-data/dorado_models.loc.sample.old && sort -t$'\t' -k1,1V tool-data/dorado_models.loc.sample.old \ - > tool-data/dorado_models.loc + > tool-data/dorado_models.loc.sample ```