diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
index 862f87d68..e5215f74c 100644
--- a/automated_tool_installation_log.tsv
+++ b/automated_tool_installation_log.tsv
@@ -6110,3 +6110,4 @@ Update	176	14/12/23 15:41:55	seqtk	False	Installed	iuc	4b494533146a	4b494533146a
 Install	1374	18/12/23 09:41:41	geneiobio	True	Installed	iuc	fc53fcdbe548	fc53fcdbe548		2/2	2/2	Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1374/install_log.txt
 Install	1376	18/12/23 11:47:34	windowmasker	True	Installed	iuc	d90ae4a02efd	d90ae4a02efd		11/11	11/11	Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1376/install_log.txt
 Install	1378	20/12/23 11:41:32	tetoolkit_tetranscripts	True	Tests failed	iuc	8e96d712a2bd	8e96d712a2bd	Production Testing	3/3	0/3	RNA-seq	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1378/install_log.txt
+Install	1380	20/12/23 11:57:01	tetoolkit_tetranscripts	True	Tests failed	iuc	8e96d712a2bd	8e96d712a2bd	Production Testing	3/3	0/3	RNA-seq	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1380/install_log.txt
diff --git a/requests/tetoolkit_tetranscripts@8e96d712a2bd.yml b/requests/tetoolkit_tetranscripts@8e96d712a2bd.yml
deleted file mode 100644
index 03079549e..000000000
--- a/requests/tetoolkit_tetranscripts@8e96d712a2bd.yml
+++ /dev/null
@@ -1,7 +0,0 @@
-tools:
-- name: tetoolkit_tetranscripts
-  owner: iuc
-  revisions:
-  - 8e96d712a2bd
-  tool_panel_section_label: RNA-seq
-  tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
index 18649211a..eacfa41d1 100644
--- a/staging.gvl.org.au/annotation.yml
+++ b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - c2ef298da409
-  - 6e9aea89e388
+  - 4efdca267d51
   - 78c75f134c16
+  - 6e9aea89e388
+  - c2ef298da409
   - 3f3e247c053d
-  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,30 +36,30 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - fe3ca740a485
-  - 44018dd6b447
-  - 4f2967b27e67
   - 1aae04680c4b
+  - 133f36c29579
   - f29602ae449e
+  - b5d8e5475247
+  - 4f2967b27e67
+  - fe3ca740a485
+  - 44018dd6b447
   - 3e1f6f6d557e
   - cd2480f35935
-  - b5d8e5475247
-  - 133f36c29579
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
   - 7be22100e5e1
-  - 6519ebe25019
   - dc027fa56d55
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
@@ -79,9 +79,9 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 7355bbf5e05f
   - 8fd427007e93
   - fe48aa4ccd5e
+  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -106,8 +106,8 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
   - 63662ae295d6
+  - d9c3016f7283
   - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -126,22 +126,22 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 9f2455341fac
   - 582fd74dc2a1
-  - 3bbe70fef6df
   - 14f588312c56
-  - b6b5cd37f2a2
   - 756376aeb1ae
+  - 3bbe70fef6df
+  - 9f2455341fac
+  - b6b5cd37f2a2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 989f7c061f35
-  - 73428a792541
-  - 30fb23d4c31c
   - 0ffe5be70caf
   - a230ea445788
+  - 989f7c061f35
+  - 30fb23d4c31c
+  - 73428a792541
   - 1691af4a0d17
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -149,20 +149,20 @@ tools:
   owner: iuc
   revisions:
   - 30f08d74024f
+  - 563a19373357
+  - 494f0bb4a993
   - e94187d661df
   - 5a5ae61da69c
-  - 494f0bb4a993
-  - 563a19373357
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - d6c7106b7b2e
-  - 2bba2ff070d9
+  - 7abc5f6dd595
   - 1bc5a03faf2e
+  - 2bba2ff070d9
   - f31125bb85ea
-  - 7abc5f6dd595
+  - d6c7106b7b2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
@@ -185,9 +185,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 2aea122fbd25
   - 79261884facd
   - 07d7991bf205
-  - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -199,10 +199,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 8b3e3657034e
   - 43798b4caee0
   - ef2ad746b589
   - 602de62d995b
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -228,8 +228,8 @@ tools:
   owner: bgruening
   revisions:
   - 74810db257cc
-  - 98cafcbd2578
   - c55643c3d813
+  - 98cafcbd2578
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -247,15 +247,15 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 370c210d9541
   - 3c1a01127868
+  - 370c210d9541
   - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -287,11 +287,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - a17498c603ec
   - eaee459f3d69
   - bf68eb663bc3
-  - a17498c603ec
-  - 8a22554cdde2
   - d643e3b03500
+  - 8a22554cdde2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -303,15 +303,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 41bfbaf3c959
   - 8661b2607b7e
+  - 41bfbaf3c959
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -323,22 +323,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 8f92c2b26e6d
-  - 5a29ab10dba6
-  - cfcf33df7fc0
   - 68693743661e
-  - 9473cd297a76
   - 268d162b9c49
   - 5b80f544c67f
+  - 8f92c2b26e6d
+  - cfcf33df7fc0
   - 5c7b70713fb5
+  - 5a29ab10dba6
+  - 9473cd297a76
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
+  - 09d6806c609e
   - 5fab4f81391d
   - 2b3e65a4252f
-  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -363,22 +363,22 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 037a11682176
-  - 45083d070fb8
-  - e1a9d6fd258d
   - 809dfc93d593
-  - ac8250086ac3
-  - ba6f87115e13
   - 37213cf56392
-  - 2c68b0c38785
   - 200c378d85f3
+  - 2c68b0c38785
+  - 037a11682176
+  - ac8250086ac3
+  - e1a9d6fd258d
+  - 45083d070fb8
+  - ba6f87115e13
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction
diff --git a/staging.gvl.org.au/assembly.yml b/staging.gvl.org.au/assembly.yml
index 5158fce7c..e1429434a 100644
--- a/staging.gvl.org.au/assembly.yml
+++ b/staging.gvl.org.au/assembly.yml
@@ -3,40 +3,40 @@ tools:
   owner: iuc
   revisions:
   - 890b794c997d
-  - a929ce596a34
-  - 0e93176640ac
-  - 7547fcab5d19
-  - 8f1b150a2487
   - fa5259cc561b
   - 841084c5fc46
+  - 7547fcab5d19
   - 553bfe8bd0b5
+  - 8f1b150a2487
+  - 0e93176640ac
+  - a929ce596a34
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bandage
   owner: iuc
   revisions:
-  - ddddce450736
-  - 94fe43e75ddc
   - 21e491ad532a
   - b9e31c5c01c7
   - 067592b6b312
   - b2860df42e16
+  - 94fe43e75ddc
+  - ddddce450736
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bellerophon
   owner: iuc
   revisions:
-  - 321347bd0494
   - 25ca5d73aedf
+  - 321347bd0494
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bionano_scaffold
   owner: bgruening
   revisions:
-  - 5258e18bbe23
-  - faee8629b460
   - 22286dab5aa1
+  - 5258e18bbe23
   - a7f16f24e9a1
+  - faee8629b460
   - 3371c5bdc17a
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -49,30 +49,30 @@ tools:
 - name: busco
   owner: iuc
   revisions:
-  - cf13a1e03e5b
-  - 1e62c28ba91d
-  - e824f5d958d0
-  - e4bd1e99bacf
+  - 94170eee0ad8
   - 1440ae06552f
-  - bb935709506a
-  - 41030a6c03b7
   - 46ae58b1d792
-  - f18f0b887c31
-  - 4048d82f0c88
-  - 2dd755c1c6ff
-  - 2a5b8b9936bf
-  - 94170eee0ad8
+  - 41030a6c03b7
   - 5ecdeca79a0d
+  - 1e62c28ba91d
+  - cf13a1e03e5b
+  - e4bd1e99bacf
+  - 2a5b8b9936bf
+  - e824f5d958d0
   - 0d243f458b53
+  - bb935709506a
+  - 2dd755c1c6ff
   - 602fb8e63aa7
+  - 4048d82f0c88
+  - f18f0b887c31
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: canu
   owner: bgruening
   revisions:
-  - 5732f959936a
   - 86f150c8019d
   - c5b7390290b1
+  - 5732f959936a
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cap3
@@ -84,12 +84,12 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
-  - 276f5d8712d5
-  - 1ce9b1d72ec3
-  - e27815e82dd4
-  - cb8dfd28c16f
   - 8d4f03b5fe9d
+  - 1ce9b1d72ec3
   - 3ee0ef312022
+  - 276f5d8712d5
+  - cb8dfd28c16f
+  - e27815e82dd4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genomescope
@@ -103,18 +103,18 @@ tools:
 - name: getorganelle
   owner: iuc
   revisions:
+  - 8b330a577046
   - 7348b69e5109
   - 06bcf65179fb
-  - 8b330a577046
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfastats
   owner: bgruening
   revisions:
-  - 3ef480892a9f
-  - 3fba9c77550a
   - 5127a713de83
   - 690c2caa367e
+  - 3fba9c77550a
+  - 3ef480892a9f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hapcut2
@@ -126,21 +126,21 @@ tools:
 - name: hifiasm
   owner: bgruening
   revisions:
+  - 60024a528cbd
+  - 41cea2aa2dce
+  - 9ef6920c3089
   - 045c7c3d8e59
-  - 3f7be05a1597
+  - ec9e21e9c71b
   - f3c89da3af16
+  - 3f7be05a1597
   - da9d8bf98802
-  - 41cea2aa2dce
   - 5f625c63b8bc
   - 71740308d412
-  - ec9e21e9c71b
   - 2061fb3b81b4
-  - 6505bd37670d
-  - 366a11d316a7
   - 5bec28269d95
+  - 366a11d316a7
   - 0ee0c3089254
-  - 60024a528cbd
-  - 9ef6920c3089
+  - 6505bd37670d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: links
@@ -159,17 +159,17 @@ tools:
   owner: iuc
   revisions:
   - de387b2b2803
-  - a96f3ad4e0d8
   - 7518ee87b53d
   - 14ddfc8ffb93
+  - a96f3ad4e0d8
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: merqury
   owner: iuc
   revisions:
   - 09c589057ee8
-  - 39edec572bae
   - f8113c25bc6b
+  - 39edec572bae
   - 9d79beb19ac3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -177,20 +177,20 @@ tools:
   owner: iuc
   revisions:
   - 29dabd8db6f2
-  - 51c2360aa807
   - eadfd71dde37
+  - 51c2360aa807
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaspades
   owner: nml
   revisions:
-  - eb7a370f6588
-  - f338e9942b27
-  - 3ca2d2a9068c
-  - 2ecf5a570907
   - 606b09cc9860
+  - 2ecf5a570907
+  - 3ca2d2a9068c
+  - eb7a370f6588
   - fd128c111ab0
   - e731ea24e48d
+  - f338e9942b27
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minia
@@ -202,11 +202,11 @@ tools:
 - name: miniasm
   owner: iuc
   revisions:
-  - 73a3846701e1
-  - 8b6d0d85252b
+  - 80d1250bd5fd
   - 8dee0218ac7d
   - a7b889b90140
-  - 80d1250bd5fd
+  - 8b6d0d85252b
+  - 73a3846701e1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitobim
@@ -218,9 +218,9 @@ tools:
 - name: novoplasty
   owner: iuc
   revisions:
-  - 64a1c751d99b
-  - 15200570e926
   - 7c2f5268d01c
+  - 15200570e926
+  - 64a1c751d99b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pilon
@@ -232,10 +232,10 @@ tools:
 - name: pretext_map
   owner: iuc
   revisions:
+  - bbe19ef04a74
+  - 8fef980d48b5
   - d256a51a656b
   - 2b16ba799da9
-  - 8fef980d48b5
-  - bbe19ef04a74
   - 02831bf9e95f
   - dfb8a4497339
   tool_panel_section_label: Assembly
@@ -244,62 +244,62 @@ tools:
   owner: iuc
   revisions:
   - e9bd16ba5ebd
-  - a315c25dc813
   - 76d4cbefff85
+  - a315c25dc813
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: quast
   owner: iuc
   revisions:
-  - 6fcbee531de6
-  - 7594365c546b
-  - 342a1d1fed7b
   - 59db8ea8c845
-  - 3061c8b029e5
-  - 72472698a2df
   - 875d0f36d66f
   - 675488238c96
+  - 6fcbee531de6
+  - 3061c8b029e5
+  - 342a1d1fed7b
+  - 7594365c546b
   - ebb0dcdb621a
+  - 72472698a2df
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: racon
   owner: bgruening
   revisions:
-  - d865b62f501c
-  - 39bed8de8017
   - aa39b19ca11e
+  - 78c533842eeb
+  - d865b62f501c
   - a199cd7ac344
+  - 39bed8de8017
   - cd06929b224b
-  - 78c533842eeb
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raven
   owner: iuc
   revisions:
+  - f11b994b7eb2
+  - f8564b2d7f63
   - 3edba9afc9bc
   - 2b2a352488fa
-  - f11b994b7eb2
   - 33b7d8481a76
-  - f8564b2d7f63
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnaspades
   owner: iuc
   revisions:
-  - 53c2bc8c2ae3
-  - 378e55aeeb25
-  - ef69617ecb42
   - 1d06c8b38e77
+  - ef69617ecb42
+  - 378e55aeeb25
+  - 53c2bc8c2ae3
   - e122f9101584
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salsa
   owner: iuc
   revisions:
-  - ba7b0f11e470
+  - f77f7a7f3b83
   - ab5b7f6b7198
+  - ba7b0f11e470
   - 9a22227bb6d0
-  - f77f7a7f3b83
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: shasta
@@ -311,70 +311,70 @@ tools:
 - name: shovill
   owner: iuc
   revisions:
-  - ee17a294d3a3
+  - 83ead2be47b2
   - 865119fcb694
-  - ad80238462c1
   - d9f6a00b6db7
   - 196a599ec43d
+  - ad80238462c1
+  - ee17a294d3a3
   - f698c7604b3b
-  - 83ead2be47b2
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: smudgeplot
   owner: galaxy-australia
   revisions:
-  - 5e0825476fb7
-  - 24e471d13fe9
   - 5a0ddb4dc3a4
+  - 24e471d13fe9
+  - 5e0825476fb7
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_biosyntheticspades
   owner: iuc
   revisions:
-  - 7490b213baa9
-  - 1bb12736175c
-  - 904bf932cf78
-  - 051fd2db8a27
   - 1fc82fe7ebef
+  - 051fd2db8a27
+  - 904bf932cf78
+  - 1bb12736175c
+  - 7490b213baa9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_coronaspades
   owner: iuc
   revisions:
   - 808b3a0a6716
+  - ad8b536d1caa
   - 34305b013402
   - fee85957cebe
   - d6e617c4e338
-  - ad8b536d1caa
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaplasmidspades
   owner: iuc
   revisions:
-  - e5a3b75a271f
-  - 21da31ed41a1
-  - 6b5a5842531e
   - 8d4b90bf9caf
   - b8002c3f7141
+  - 6b5a5842531e
+  - e5a3b75a271f
+  - 21da31ed41a1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaviralspades
   owner: iuc
   revisions:
-  - 2a10645aeadd
   - 9de69775f512
+  - 328aa71f0f3c
   - f1532cb33c75
+  - 2a10645aeadd
   - 86f66ab58e14
-  - 328aa71f0f3c
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_plasmidspades
   owner: iuc
   revisions:
-  - e41dcb0e913b
+  - 1708851f8804
   - 6aad515a5270
+  - e41dcb0e913b
   - 85fb02c43042
-  - 1708851f8804
   - 340bc17f49cf
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -382,8 +382,8 @@ tools:
   owner: iuc
   revisions:
   - 249f6a28c751
-  - b3490b036c5a
   - b65a43f70b99
+  - b3490b036c5a
   - d5fb354f745d
   - d159735a6a9f
   tool_panel_section_label: Assembly
@@ -391,10 +391,10 @@ tools:
 - name: spades
   owner: nml
   revisions:
-  - dd7ad84f3943
+  - b7829778729f
   - d2d1df21dfb9
+  - dd7ad84f3943
   - 9006e5836729
-  - b7829778729f
   - 7897763d14ec
   - 33368fec3b70
   tool_panel_section_label: Assembly
@@ -404,78 +404,78 @@ tools:
   revisions:
   - ced385aa976d
   - 6f4c8ad6ea01
-  - 189e837009c9
-  - 8f631679571f
   - 505a9833ab5d
+  - 8f631679571f
+  - 189e837009c9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_consensus
   owner: iuc
   revisions:
+  - 356afed970b4
+  - 19bdfd1e6fe3
   - d40ed4eb0c0e
   - e59bee4565b3
   - 9ded6109434a
-  - 19bdfd1e6fe3
-  - 356afed970b4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_partition
   owner: iuc
   revisions:
+  - 6dd935e4984b
   - ebd801e712bc
   - 4688ae3b49b5
-  - 80a17897564d
   - b23249f81bc4
-  - 6dd935e4984b
+  - 80a17897564d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_reconcile_msa
   owner: iuc
   revisions:
   - cb1e3db43020
-  - b5e35a2ca4f3
   - 937ea677d437
-  - b64696992ee9
+  - b5e35a2ca4f3
   - 59bd28f6265d
+  - b64696992ee9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_subsample
   owner: iuc
   revisions:
-  - 05bd7504fdb2
-  - 383bb5ad32e2
   - 2628f6790eda
   - 6015aa0303f2
+  - 05bd7504fdb2
+  - 383bb5ad32e2
   - cb4768eeca3b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unicycler
   owner: iuc
   revisions:
-  - 6e26c9afd301
+  - 0a3a602cd1e3
   - e92675014ac9
-  - 9e3e80cc4ad4
+  - 6e26c9afd301
   - d10bdad2fd17
-  - 0a3a602cd1e3
+  - 9e3e80cc4ad4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvet
   owner: devteam
   revisions:
   - 8d09f8be269e
-  - 920677cd220f
-  - 08256557922f
   - 5da9a0e2fb2d
+  - 08256557922f
+  - 920677cd220f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvetoptimiser
   owner: simon-gladman
   revisions:
-  - d81360ea69d8
-  - 37d88f41c810
+  - 82398ba86ba7
   - 4a53b89fa703
   - 0e2b4e3f9ca1
-  - 82398ba86ba7
+  - d81360ea69d8
+  - 37d88f41c810
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: yahs
diff --git a/staging.gvl.org.au/bacterial_typing.yml b/staging.gvl.org.au/bacterial_typing.yml
index 4780df845..1ba572182 100644
--- a/staging.gvl.org.au/bacterial_typing.yml
+++ b/staging.gvl.org.au/bacterial_typing.yml
@@ -15,17 +15,17 @@ tools:
 - name: mlst
   owner: iuc
   revisions:
-  - ded48b36f3b7
+  - 1f5641a52664
   - 8e8dc9a1e3e5
+  - ded48b36f3b7
   - 31812e7a1315
-  - 1f5641a52664
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sistr_cmd
   owner: nml
   revisions:
+  - 24a7a95867b0
   - 17fcac7ddf54
   - 5c8ff92e38a9
-  - 24a7a95867b0
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/bb_tools.yml b/staging.gvl.org.au/bb_tools.yml
index 93b7c3d31..05eb64807 100644
--- a/staging.gvl.org.au/bb_tools.yml
+++ b/staging.gvl.org.au/bb_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: bbtools_bbduk
   owner: iuc
   revisions:
-  - a9c9d768b751
   - 159b04e36791
   - 204a131e47db
+  - a9c9d768b751
   tool_panel_section_label: BB Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/bed.yml b/staging.gvl.org.au/bed.yml
index 10d554a70..4a7144895 100644
--- a/staging.gvl.org.au/bed.yml
+++ b/staging.gvl.org.au/bed.yml
@@ -2,16 +2,16 @@ tools:
 - name: bedtools
   owner: iuc
   revisions:
-  - e19bebe96cd2
   - 07e8b80f278c
+  - 589e7e57fd6d
+  - a68aa6c1204a
+  - b28e0cfa7ba1
+  - e19bebe96cd2
+  - a1a923cd89e8
   - a8eabd2838f6
   - 87ee588b3d45
-  - a1a923cd89e8
+  - 0a5c785ac6db
   - ce3c7f062223
-  - 589e7e57fd6d
-  - b28e0cfa7ba1
   - dde39ba9c031
-  - 0a5c785ac6db
-  - a68aa6c1204a
   tool_panel_section_label: BED
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/blast.yml b/staging.gvl.org.au/blast.yml
index 26b706796..be3be6457 100644
--- a/staging.gvl.org.au/blast.yml
+++ b/staging.gvl.org.au/blast.yml
@@ -9,9 +9,9 @@ tools:
   owner: bgruening
   revisions:
   - f921014aba5a
-  - 54f751e413f4
-  - e8ac2b53f262
   - 62c9df8382c2
+  - e8ac2b53f262
+  - 54f751e413f4
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: diamond
@@ -23,13 +23,13 @@ tools:
 - name: ncbi_blast_plus
   owner: devteam
   revisions:
-  - e25d3acf6e68
   - acf4e47b734c
+  - 5edc472ec434
+  - a52d2d93e595
+  - 6f386c5dc4fb
+  - e25d3acf6e68
   - 2889433c7ae1
   - 0e3cf9594bb7
-  - 6f386c5dc4fb
-  - a52d2d93e595
-  - 5edc472ec434
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_blast_plus
diff --git a/staging.gvl.org.au/chemicaltoolbox.yml b/staging.gvl.org.au/chemicaltoolbox.yml
index 8a1d0481a..222f84998 100644
--- a/staging.gvl.org.au/chemicaltoolbox.yml
+++ b/staging.gvl.org.au/chemicaltoolbox.yml
@@ -4,10 +4,10 @@ tools:
   revisions:
   - 27ee142314a9
   - 095ad4d096d1
-  - f4230f116196
+  - 6ca543ec1bf8
   - 710301bc46fa
+  - f4230f116196
   - da6bd1975a71
-  - 6ca543ec1bf8
   - c8cdde00b105
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -80,15 +80,15 @@ tools:
 - name: ctb_frankenstein_ligand
   owner: bgruening
   revisions:
-  - 7255688c77f3
   - 8e214e52e461
+  - 7255688c77f3
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: enumerate_charges
   owner: bgruening
   revisions:
-  - 2a868592ebcb
   - 67ee76f0e497
+  - 2a868592ebcb
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fpocket
@@ -106,32 +106,32 @@ tools:
 - name: gmx_editconf
   owner: chemteam
   revisions:
-  - 3b8a9d5ced85
   - bfb65cb551d8
-  - 79cfd9ead848
-  - 0fac8e2afc13
   - 88076940fa94
+  - 0fac8e2afc13
+  - 79cfd9ead848
+  - 3b8a9d5ced85
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_em
   owner: chemteam
   revisions:
+  - f5d979cb4b54
+  - 715cd0e87781
   - eb6564a60136
   - 55918daa5651
-  - d532b7e5f64b
-  - 715cd0e87781
   - b46d4b4d995c
-  - f5d979cb4b54
+  - d532b7e5f64b
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_energy
   owner: chemteam
   revisions:
   - f26afd1b7104
-  - 5579659312e6
   - d2f955aea23a
-  - 97872d87ba80
   - fdf2cc80adb5
+  - 97872d87ba80
+  - 5579659312e6
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_merge_topology_files
@@ -145,52 +145,52 @@ tools:
 - name: gmx_setup
   owner: chemteam
   revisions:
-  - 4da9ee404eab
   - 070e3ecc3fda
-  - 2c349b027a01
-  - cac1886249a2
   - ed736e6eee39
+  - 4da9ee404eab
+  - cac1886249a2
+  - 2c349b027a01
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_sim
   owner: chemteam
   revisions:
+  - 525ca7c8065f
+  - 73008ef1f487
+  - 807aa4c9293d
   - d1f803b5943c
+  - da8753545526
   - c0c9a5024177
-  - 73008ef1f487
   - 2e219a2d9327
-  - 525ca7c8065f
   - f197e34c33a9
-  - 807aa4c9293d
-  - da8753545526
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_solvate
   owner: chemteam
   revisions:
+  - 1809414a9454
+  - c4fbab8e03c5
   - 27ea4e1a3f95
+  - 7568ae18908a
   - 61094e01eff9
   - 2c8ed1b52bf7
-  - 7568ae18908a
-  - 1809414a9454
-  - c4fbab8e03c5
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: md_converter
   owner: chemteam
   revisions:
-  - 730ef07b90ae
   - ba83f0923369
+  - 730ef07b90ae
+  - 79e8ab8f1e81
   - d7ec25187599
   - ccfbd956a2d3
-  - 79e8ab8f1e81
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mdanalysis_cosine_analysis
   owner: chemteam
   revisions:
-  - 48d6a6eb438b
   - 9a3a1f698fc6
+  - 48d6a6eb438b
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: natural_product_likeness
@@ -203,8 +203,8 @@ tools:
   owner: bgruening
   revisions:
   - e6011617c748
-  - 1400d1977e7b
   - b59c91adeac1
+  - 1400d1977e7b
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openbabel_svg_depiction
@@ -234,9 +234,9 @@ tools:
 - name: sucos_max_score
   owner: bgruening
   revisions:
-  - 9b48456a96fe
-  - 85fad59f8168
   - d4c67ced6abc
+  - 85fad59f8168
+  - 9b48456a96fe
   - bf99565cec1f
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/chip_seq.yml b/staging.gvl.org.au/chip_seq.yml
index 3b9a2169f..3b0f5ec81 100644
--- a/staging.gvl.org.au/chip_seq.yml
+++ b/staging.gvl.org.au/chip_seq.yml
@@ -31,9 +31,9 @@ tools:
   revisions:
   - 640d3af5d833
   - 86e2413cf3f8
-  - 424aefbd7777
-  - 495a4173006f
   - f5d67c722d67
+  - 495a4173006f
+  - 424aefbd7777
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: macs2
@@ -52,9 +52,9 @@ tools:
 - name: sicer
   owner: devteam
   revisions:
-  - 4a14714649b4
   - 74c9214cc8e6
   - 5c2cc3b58c7d
+  - 4a14714649b4
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sicer
diff --git a/staging.gvl.org.au/collection_operations.yml b/staging.gvl.org.au/collection_operations.yml
index 79bbd2c6f..59e97c3c8 100644
--- a/staging.gvl.org.au/collection_operations.yml
+++ b/staging.gvl.org.au/collection_operations.yml
@@ -10,9 +10,9 @@ tools:
   owner: nml
   revisions:
   - 33151a38533a
-  - 90981f86000f
   - 25136a2b0cfe
   - 830961c48e42
+  - 90981f86000f
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_column_join
@@ -25,8 +25,8 @@ tools:
 - name: split_file_to_collection
   owner: bgruening
   revisions:
-  - baabc30154cd
   - 0046692724f9
+  - baabc30154cd
   - 6cbe2f30c2d7
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/convert_formats.yml b/staging.gvl.org.au/convert_formats.yml
index 4803b92d9..4c07255f7 100644
--- a/staging.gvl.org.au/convert_formats.yml
+++ b/staging.gvl.org.au/convert_formats.yml
@@ -8,37 +8,37 @@ tools:
 - name: biom_add_metadata
   owner: iuc
   revisions:
-  - dad9da48a09a
-  - 6ef0b5664c69
-  - 4a6ee918c13a
-  - 0b3c3ad92827
   - 367b1ed91207
-  - f3a19509108a
+  - 4a6ee918c13a
+  - 6ef0b5664c69
+  - dad9da48a09a
+  - 5e1240a87bcb
   - a3b86937ead6
   - e3cbd2287f63
-  - 5e1240a87bcb
+  - 0b3c3ad92827
+  - f3a19509108a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: biom_convert
   owner: iuc
   revisions:
-  - 1b5fc03380d4
-  - 584008e574b2
   - 54ccb7e1f49a
   - bd46669113b9
-  - e177a8ea0bf1
-  - e525f9ffb9ac
+  - 584008e574b2
+  - 33c99804a32f
+  - 72ed72122deb
+  - 1b5fc03380d4
   - 501c21cce614
   - a4db66553a61
-  - 72ed72122deb
-  - 33c99804a32f
+  - e177a8ea0bf1
+  - e525f9ffb9ac
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bp_genbank2gff3
   owner: iuc
   revisions:
-  - 11c3eb512633
   - a0d092f27fdf
+  - 11c3eb512633
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compress_file
@@ -78,8 +78,8 @@ tools:
 - name: gfa_to_fa
   owner: iuc
   revisions:
-  - e33c82b63727
   - 8e9d604e92f4
+  - e33c82b63727
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gffcompare_to_bed
@@ -124,18 +124,18 @@ tools:
 - name: tabular_to_fastq
   owner: devteam
   revisions:
-  - 2dcfbbf9071a
   - 68f57cc8fad0
+  - 2dcfbbf9071a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: thermo_raw_file_converter
   owner: galaxyp
   revisions:
-  - 19e45916daf9
-  - 92ac8e086317
+  - 63769c4217a7
   - b9b385097f13
+  - 92ac8e086317
   - 26c6706bfb07
-  - 63769c4217a7
+  - 19e45916daf9
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2maf
diff --git a/staging.gvl.org.au/deeptools.yml b/staging.gvl.org.au/deeptools.yml
index daf82a6ac..4a530c37f 100644
--- a/staging.gvl.org.au/deeptools.yml
+++ b/staging.gvl.org.au/deeptools.yml
@@ -2,46 +2,46 @@ tools:
 - name: deeptools_bam_compare
   owner: bgruening
   revisions:
+  - de72ba3ed6f2
+  - a1ca9bccc7f2
   - 5f6d123679f4
+  - 29451af70c52
+  - c929a006727f
   - 268e91e540ee
   - e821645ef8fc
-  - c929a006727f
-  - de72ba3ed6f2
-  - 29451af70c52
-  - a1ca9bccc7f2
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_coverage
   owner: bgruening
   revisions:
   - 0e49b109abc2
-  - 7a7fd0f5f15d
-  - 0e143b4c3987
   - 2d2cf5c1ea8a
+  - 7a7fd0f5f15d
+  - 12af64f93288
   - bb1e4f63e0e6
+  - 0e143b4c3987
   - 5d11599b8a7d
-  - 12af64f93288
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_pe_fragmentsize
   owner: bgruening
   revisions:
-  - 1d848bc4585f
-  - c06951d10364
   - 195e98217334
+  - 1d848bc4585f
   - dc059492a995
   - 7c1beb6d6eca
   - 81b1e3e1fc6c
+  - c06951d10364
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bigwig_compare
   owner: bgruening
   revisions:
   - 93eb012d9eed
+  - 07418a30ed01
+  - a67ac707496a
   - 3d211717a775
   - bfff7454b59a
-  - a67ac707496a
-  - 07418a30ed01
   - 71aa86af6762
   - 26e7304d6737
   tool_panel_section_label: DeepTools
@@ -49,158 +49,158 @@ tools:
 - name: deeptools_compute_gc_bias
   owner: bgruening
   revisions:
-  - b8858746dc1f
   - 5be24eba848d
-  - 56d5b797ce84
-  - 2bc10a9ca58b
   - 29fcfd36e90a
   - dd0b7398bb96
+  - 56d5b797ce84
+  - b8858746dc1f
   - 26983857c91a
+  - 2bc10a9ca58b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix_operations
   owner: bgruening
   revisions:
-  - 7ef978dc1b8a
-  - 72bfafe3330b
-  - c3e012dfe21f
   - 9384cd033f30
   - ee3a1b0f45f1
+  - 7ef978dc1b8a
   - 7e6bcd2e5128
+  - c3e012dfe21f
   - e6d0bff01239
+  - 72bfafe3330b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix
   owner: bgruening
   revisions:
-  - a60c359ec43c
-  - fb9cf9c97ec4
   - 167788df3b46
   - 9470f29702f8
+  - a60c359ec43c
+  - fb9cf9c97ec4
+  - d9a637e83828
   - 514fa53b5efb
   - fd1275e01605
   - b73e213add0c
-  - d9a637e83828
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_correct_gc_bias
   owner: bgruening
   revisions:
-  - 86febdcc4283
-  - a02cfa31e9cb
+  - ca0616bb2cdf
   - c34d11ea4ba6
-  - e479c7ca5570
+  - a02cfa31e9cb
   - 5bffaa8354a1
-  - ca0616bb2cdf
+  - e479c7ca5570
+  - 86febdcc4283
   - 2c37ce318bc3
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bam_summary
   owner: bgruening
   revisions:
-  - 004aea905d4d
-  - 01fb6a7654e6
-  - 192ef85c0b0b
   - 78f405266706
+  - 192ef85c0b0b
   - 2d466b530754
-  - 69a8621ca2f0
+  - 004aea905d4d
   - 1fcb7adc39b8
+  - 01fb6a7654e6
+  - 69a8621ca2f0
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bigwig_summary
   owner: bgruening
   revisions:
   - d580d6acd1df
-  - db940c262830
-  - 137c4beed34b
-  - 2f9e4843f480
+  - 9ecba5e225a6
+  - 3c9f0c486cca
   - 459cfa861f0b
+  - 2f9e4843f480
+  - 137c4beed34b
   - d9ce4897dbb2
-  - 3c9f0c486cca
-  - 9ecba5e225a6
+  - db940c262830
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_correlation
   owner: bgruening
   revisions:
-  - f264afa9fa6f
-  - fbe773640707
+  - fd408d755394
+  - 2c66e43f1c86
   - bd7db9e2f2cb
   - 32e451def88c
-  - 2c66e43f1c86
-  - fd408d755394
+  - f264afa9fa6f
+  - fbe773640707
   - bad3ca889618
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_coverage
   owner: bgruening
   revisions:
-  - 7fda5607e777
+  - 7e361d147872
   - 3b9d990a0a0e
-  - 4e12ea27f788
+  - 9368fbc49c8b
   - 56bce3c82278
-  - 7e361d147872
+  - 7fda5607e777
   - 231994413f89
-  - 9368fbc49c8b
+  - 4e12ea27f788
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_enrichment
   owner: bgruening
   revisions:
-  - e65d16fb2724
-  - 94ca68515826
-  - d9114ef1c8a5
-  - 4431f39ede55
-  - b1779366c8e9
   - ce4ce3316f74
+  - 4431f39ede55
   - c03c3384cd81
+  - e65d16fb2724
+  - b1779366c8e9
+  - d9114ef1c8a5
+  - 94ca68515826
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_fingerprint
   owner: bgruening
   revisions:
-  - 23f7c5f1fdaf
-  - b88ebb3672a1
   - f8fc4e5aff9d
-  - 793665fff0f8
-  - 2da482e408b8
+  - b88ebb3672a1
   - 4ed32329e0ed
+  - 23f7c5f1fdaf
+  - 2da482e408b8
   - d57251071381
+  - 793665fff0f8
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_heatmap
   owner: bgruening
   revisions:
-  - 25d830337d31
-  - 512155688d98
   - e4c7985d4585
   - ba6efa77fb79
-  - c60570fa602f
-  - a4dfb122e52b
   - 010e58e9d822
+  - c60570fa602f
+  - 512155688d98
+  - 25d830337d31
   - a7849312d328
+  - a4dfb122e52b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_pca
   owner: bgruening
   revisions:
-  - c899e0ccff8c
-  - 38e3f226248b
-  - 443d9a9d6d11
-  - 4d678170d29b
-  - aa200e4f3939
   - 69264da0ce77
+  - aa200e4f3939
+  - 4d678170d29b
+  - 443d9a9d6d11
+  - c899e0ccff8c
   - 00d869ea03a1
+  - 38e3f226248b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_profile
   owner: bgruening
   revisions:
-  - 6662b1a8d326
+  - a2d70c4fd406
   - aac8444d6681
+  - d806504e96d9
   - c361b12d207a
+  - 6662b1a8d326
   - 10301d137111
-  - d806504e96d9
-  - a2d70c4fd406
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/dna_metabarcoding.yml b/staging.gvl.org.au/dna_metabarcoding.yml
index a3e2b1a19..e4df90b96 100644
--- a/staging.gvl.org.au/dna_metabarcoding.yml
+++ b/staging.gvl.org.au/dna_metabarcoding.yml
@@ -2,8 +2,8 @@ tools:
 - name: obi_annotate
   owner: iuc
   revisions:
-  - 3021b9f5809f
   - f82cefbbcea5
+  - 3021b9f5809f
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_clean
@@ -16,8 +16,8 @@ tools:
 - name: obi_convert
   owner: iuc
   revisions:
-  - 4d705e3443a7
   - 374fd9feb032
+  - 4d705e3443a7
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_grep
@@ -37,15 +37,15 @@ tools:
 - name: obi_ngsfilter
   owner: iuc
   revisions:
-  - 3bf57dadf7cd
   - 76e69de726b2
+  - 3bf57dadf7cd
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_sort
   owner: iuc
   revisions:
-  - 12b9e285ca1c
   - e614dcabd870
+  - 12b9e285ca1c
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_stat
diff --git a/staging.gvl.org.au/emboss.yml b/staging.gvl.org.au/emboss.yml
index c72370b98..42a614fb1 100644
--- a/staging.gvl.org.au/emboss.yml
+++ b/staging.gvl.org.au/emboss.yml
@@ -3,8 +3,8 @@ tools:
   owner: devteam
   revisions:
   - ce385837c160
+  - dba489bfcd62
   - 832c20329690
   - 63dd26468588
-  - dba489bfcd62
   tool_panel_section_label: EMBOSS
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/epigenetics.yml b/staging.gvl.org.au/epigenetics.yml
index f21e9b48f..7f313196d 100644
--- a/staging.gvl.org.au/epigenetics.yml
+++ b/staging.gvl.org.au/epigenetics.yml
@@ -2,10 +2,10 @@ tools:
 - name: bwameth
   owner: iuc
   revisions:
-  - 62f5fab76dfb
-  - 6da3972210ee
-  - d82648ad25a3
   - 29bdbc353f20
+  - d82648ad25a3
+  - 6da3972210ee
+  - 62f5fab76dfb
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metilene
diff --git a/staging.gvl.org.au/fastafastq.yml b/staging.gvl.org.au/fastafastq.yml
index ec4d06e63..4c7f0f39c 100644
--- a/staging.gvl.org.au/fastafastq.yml
+++ b/staging.gvl.org.au/fastafastq.yml
@@ -8,22 +8,22 @@ tools:
 - name: cutadapt
   owner: lparsons
   revisions:
-  - 5915ea1ec9b1
+  - 8c0175e03cee
+  - de6cebe3c043
+  - c5e2e5902201
+  - 4e5056fefd88
   - 135b80fb1ac2
   - c053d4cad713
-  - 44e2cc14f75b
-  - e4691e1589d3
-  - 288f97432497
-  - 093678460093
   - c4b82dce8335
-  - 8665bcc8b847
-  - de6cebe3c043
-  - 4e5056fefd88
-  - 660cffd8d92a
   - 49370cb85f0f
+  - 660cffd8d92a
+  - 8665bcc8b847
+  - 44e2cc14f75b
+  - 288f97432497
+  - 5915ea1ec9b1
   - 48f587c13075
-  - 8c0175e03cee
-  - c5e2e5902201
+  - e4691e1589d3
+  - 093678460093
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cutadapt
@@ -35,8 +35,8 @@ tools:
 - name: fasta_clipping_histogram
   owner: devteam
   revisions:
-  - 9db07fd39f85
   - 8889eb864cef
+  - 9db07fd39f85
   - f666895cbebd
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -49,15 +49,15 @@ tools:
 - name: fasta_compute_length
   owner: devteam
   revisions:
-  - de2db1bdfbf8
   - 7d37cfda8e00
+  - de2db1bdfbf8
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_concatenate_by_species
   owner: devteam
   revisions:
-  - 25b8736c627a
   - 717aee069681
+  - 25b8736c627a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_extract
@@ -76,9 +76,9 @@ tools:
 - name: fasta_formatter
   owner: devteam
   revisions:
-  - 859422bcb689
   - 9457a20156db
   - 516b97a23d7e
+  - 859422bcb689
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_formatter
@@ -98,8 +98,8 @@ tools:
   owner: devteam
   revisions:
   - f773e98b26cf
-  - f81d4362b6c1
   - ec0b5076173a
+  - f81d4362b6c1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_nucleotide_changer
@@ -111,10 +111,10 @@ tools:
 - name: fasta_stats
   owner: iuc
   revisions:
-  - 0dbb995c7d35
   - cd0874854f51
-  - 56022eb50bbd
+  - 0dbb995c7d35
   - 9c620a950d3a
+  - 56022eb50bbd
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_stats
@@ -126,9 +126,9 @@ tools:
 - name: fastp
   owner: iuc
   revisions:
+  - 1d8fe9bc4cb0
   - 65b93b623c77
   - dbf9c561ef29
-  - 1d8fe9bc4cb0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastp
@@ -140,15 +140,15 @@ tools:
 - name: fastq_combiner
   owner: devteam
   revisions:
-  - b05e39b9c170
   - f1dc2a761c30
+  - b05e39b9c170
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_filter
   owner: devteam
   revisions:
-  - 81a9090d6df3
   - 10b75444feae
+  - 81a9090d6df3
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_groomer
@@ -168,15 +168,15 @@ tools:
 - name: fastq_masker_by_quality
   owner: devteam
   revisions:
-  - 9dfda4e310ed
   - 9282652e7234
+  - 9dfda4e310ed
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_deinterlacer
   owner: devteam
   revisions:
-  - f3936d0632cb
   - 03d57fea6482
+  - f3936d0632cb
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_interlacer
@@ -189,8 +189,8 @@ tools:
 - name: fastq_paired_end_joiner
   owner: devteam
   revisions:
-  - c885369b207b
   - 09a2199cd356
+  - c885369b207b
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_splitter
@@ -210,8 +210,8 @@ tools:
 - name: fastq_quality_converter
   owner: devteam
   revisions:
-  - 54053ea6c77e
   - 045f0e1043f7
+  - 54053ea6c77e
   - 74db4cffab1f
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -244,10 +244,10 @@ tools:
 - name: fastx_artifacts_filter
   owner: devteam
   revisions:
+  - 529bccd5e4a1
   - 09070cacefd8
   - 567d5b3c52b1
   - d5e9e83cd3d8
-  - 529bccd5e4a1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_artifacts_filter
@@ -259,8 +259,8 @@ tools:
 - name: fastx_barcode_splitter
   owner: devteam
   revisions:
-  - 0b7ec11b3c7c
   - 8abdedf55101
+  - 0b7ec11b3c7c
   - 4bedca26c133
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -273,10 +273,10 @@ tools:
 - name: fastx_clipper
   owner: devteam
   revisions:
-  - bdf1ce174e39
+  - cb1e251cac37
   - 90858c306551
   - 736b8f6ee456
-  - cb1e251cac37
+  - bdf1ce174e39
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_clipper
@@ -289,8 +289,8 @@ tools:
   owner: devteam
   revisions:
   - 421f0af4ee95
-  - 7ce1891db6f5
   - 07497255281e
+  - 7ce1891db6f5
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_collapser
@@ -303,9 +303,9 @@ tools:
   owner: devteam
   revisions:
   - f984bb114520
+  - 3599f5451ee2
   - b29d37ca9e41
   - 02f8a17a4ebd
-  - 3599f5451ee2
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_renamer
@@ -317,8 +317,8 @@ tools:
 - name: fastx_reverse_complement
   owner: devteam
   revisions:
-  - 177f0621c266
   - 0c2907307ba4
+  - 177f0621c266
   - 6027ef51ef91
   - e246088b6e34
   tool_panel_section_label: FASTA/FASTQ
@@ -332,10 +332,10 @@ tools:
 - name: fastx_trimmer
   owner: devteam
   revisions:
-  - 377ac2829eac
+  - 73194cdd4f57
   - 61b4cedc8934
   - 547e8d00f11c
-  - 73194cdd4f57
+  - 377ac2829eac
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_trimmer
@@ -359,8 +359,8 @@ tools:
 - name: pear
   owner: iuc
   revisions:
-  - b4c6f054210a
   - 2f804526f5fd
+  - b4c6f054210a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pear
@@ -379,8 +379,8 @@ tools:
 - name: seqtk
   owner: iuc
   revisions:
-  - 3da72230c066
   - 4b494533146a
+  - 3da72230c066
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seqtk
@@ -398,8 +398,8 @@ tools:
 - name: trimmomatic
   owner: pjbriggs
   revisions:
-  - dfa082f84068
   - 51b771646466
+  - dfa082f84068
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fasplit
@@ -418,10 +418,10 @@ tools:
 - name: umi_tools_count
   owner: iuc
   revisions:
+  - b557acca0b56
+  - 24013bf85a6f
   - a535cf1e5da4
   - e654095ab143
-  - 24013bf85a6f
-  - b557acca0b56
   - 8250ea3a1501
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -440,12 +440,12 @@ tools:
 - name: umi_tools_extract
   owner: iuc
   revisions:
-  - 7accf7407811
-  - 828dba98cdb4
-  - 9fa7803d1c51
   - 27ac32a22ad2
+  - 7accf7407811
   - 6a675c3aa610
+  - 9fa7803d1c51
   - f3759eec3018
+  - 828dba98cdb4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_extract
diff --git a/staging.gvl.org.au/fastq_quality_control.yml b/staging.gvl.org.au/fastq_quality_control.yml
index 0fe69d880..4c4dc7ed8 100644
--- a/staging.gvl.org.au/fastq_quality_control.yml
+++ b/staging.gvl.org.au/fastq_quality_control.yml
@@ -2,29 +2,29 @@ tools:
 - name: fastq_quality_filter
   owner: devteam
   revisions:
+  - 7b4468117008
   - 64e9a6afdd0c
   - e41385662e5e
-  - 7b4468117008
   - ce9cd02d5b88
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer_by_quality
   owner: devteam
   revisions:
-  - c64d534a763c
   - 8050e091e99b
+  - c64d534a763c
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqc
   owner: devteam
   revisions:
-  - 5ec9f6bceaee
-  - 2b0c9d9fc6ca
-  - e7b2202befea
-  - 3d0c7bdf12f5
   - 9da02be9c6cc
   - ff9530579d1f
+  - 5ec9f6bceaee
   - f2e8552cf1d0
+  - 3d0c7bdf12f5
+  - e7b2202befea
+  - 2b0c9d9fc6ca
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqe
@@ -38,38 +38,38 @@ tools:
   owner: devteam
   revisions:
   - ad116ae3f4d9
-  - 18a51655db17
   - b6b54ba71bd8
+  - 18a51655db17
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_quality_statistics
   owner: devteam
   revisions:
-  - cc0fd298cc17
   - 7306ec78632a
   - 59003d0543cd
+  - cc0fd298cc17
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filtlong
   owner: iuc
   revisions:
-  - 1f296803dfa3
-  - 8880fb74ef56
   - a72af9de6bf5
+  - 8880fb74ef56
+  - 1f296803dfa3
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: multiqc
   owner: iuc
   revisions:
-  - 5e33b465d8d5
-  - 1c2db0054039
   - 9a913cdee30e
-  - 75c93c70d094
   - 3d93dd18d9f8
   - f7985e0479b9
-  - abfd8a6544d7
   - bf675f34b056
+  - 5e33b465d8d5
+  - 75c93c70d094
+  - abfd8a6544d7
   - b2f1f75d49c4
+  - 1c2db0054039
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trim_galore
diff --git a/staging.gvl.org.au/filter_and_sort.yml b/staging.gvl.org.au/filter_and_sort.yml
index 789344242..dd060751b 100644
--- a/staging.gvl.org.au/filter_and_sort.yml
+++ b/staging.gvl.org.au/filter_and_sort.yml
@@ -2,8 +2,8 @@ tools:
 - name: filter_by_fasta_ids
   owner: galaxyp
   revisions:
-  - dff7df6fcab5
   - 3c623e81be77
+  - dff7df6fcab5
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sample_seqs
@@ -15,7 +15,7 @@ tools:
 - name: seq_filter_by_id
   owner: peterjc
   revisions:
-  - 83a19df00eab
   - 141612f8c3e3
+  - 83a19df00eab
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/gemini_tools.yml b/staging.gvl.org.au/gemini_tools.yml
index a414a7d43..e99293c5a 100644
--- a/staging.gvl.org.au/gemini_tools.yml
+++ b/staging.gvl.org.au/gemini_tools.yml
@@ -16,9 +16,9 @@ tools:
 - name: gemini_annotate
   owner: iuc
   revisions:
+  - 8f53b238a360
   - f2f3bc622a16
   - 0c8f7322f8fc
-  - 8f53b238a360
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_burden
@@ -31,15 +31,15 @@ tools:
 - name: gemini_comp_hets
   owner: iuc
   revisions:
-  - 62647e2637f6
   - 7cf9bc210044
+  - 62647e2637f6
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_db_info
   owner: iuc
   revisions:
-  - 4c5f4e9b1931
   - 7d75673f4d6f
+  - 4c5f4e9b1931
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_de_novo
@@ -52,8 +52,8 @@ tools:
 - name: gemini_dump
   owner: iuc
   revisions:
-  - 96a2d270bf0f
   - 40f85b45e472
+  - 96a2d270bf0f
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_fusions
@@ -86,9 +86,9 @@ tools:
 - name: gemini_load
   owner: iuc
   revisions:
-  - 45296e47d565
-  - cf61daf064fe
   - b2c25142267e
+  - cf61daf064fe
+  - 45296e47d565
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_lof_sieve
@@ -101,15 +101,15 @@ tools:
 - name: gemini_mendel_errors
   owner: iuc
   revisions:
-  - 61343646155c
   - 00c2734b3bea
+  - 61343646155c
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_pathways
   owner: iuc
   revisions:
-  - 9199331c3421
   - 6b09debcfc49
+  - 9199331c3421
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_qc
@@ -122,16 +122,16 @@ tools:
 - name: gemini_query
   owner: iuc
   revisions:
-  - 666f60a9331a
-  - 840fb4850be3
   - da74170c55c7
+  - 840fb4850be3
+  - 666f60a9331a
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_recessive_and_dominant
   owner: iuc
   revisions:
-  - 05124dc72dba
   - 86f3aac4418d
+  - 05124dc72dba
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_region
@@ -144,28 +144,28 @@ tools:
 - name: gemini_roh
   owner: iuc
   revisions:
-  - 345d41f3f574
   - 93967598e18e
+  - 345d41f3f574
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_set_somatic
   owner: iuc
   revisions:
-  - e4e2128460e3
   - ef9991a4a9a7
+  - e4e2128460e3
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_stats
   owner: iuc
   revisions:
-  - ee894347fcd6
   - 5c9efee9cb1e
+  - ee894347fcd6
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_windower
   owner: iuc
   revisions:
-  - 0c58ba91d018
   - 8f04952b8882
+  - 0c58ba91d018
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/genome_editing.yml b/staging.gvl.org.au/genome_editing.yml
index 095be2eba..5d63fa522 100644
--- a/staging.gvl.org.au/genome_editing.yml
+++ b/staging.gvl.org.au/genome_editing.yml
@@ -9,8 +9,8 @@ tools:
 - name: mageck_gsea
   owner: iuc
   revisions:
-  - b946929d31c4
   - d46e36492bff
+  - b946929d31c4
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_mle
@@ -23,8 +23,8 @@ tools:
 - name: mageck_pathway
   owner: iuc
   revisions:
-  - 39a996d44e16
   - 9744e1124d0f
+  - 39a996d44e16
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_test
diff --git a/staging.gvl.org.au/get_data.yml b/staging.gvl.org.au/get_data.yml
index 393f2987d..6186d99da 100644
--- a/staging.gvl.org.au/get_data.yml
+++ b/staging.gvl.org.au/get_data.yml
@@ -2,56 +2,56 @@ tools:
 - name: dbbuilder
   owner: galaxyp
   revisions:
-  - b39347891609
-  - 983bf725dfc2
   - c1b437242fee
   - e9df53a75f3c
+  - b39347891609
+  - 983bf725dfc2
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_acc_download
   owner: iuc
   revisions:
-  - 28587613264f
   - e063168e0a81
   - 1c58de56d587
+  - 28587613264f
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sra_tools
   owner: iuc
   revisions:
-  - 1790dcf3c32d
+  - 653e89d73fc4
   - 6591f049cf7e
-  - 9a776b080193
-  - 4df8de2d0e48
-  - 6ea73833cf67
-  - 69ebb7f46e45
-  - e08a7ad4378b
+  - 5e6237d58b0c
   - 83c7d564b128
+  - 69ebb7f46e45
   - 7068f48d0ef9
-  - e407b9da183a
-  - f5ea3ce9b9b0
-  - 5e6237d58b0c
-  - 4317d3cb6cba
   - c441583adae5
+  - 9a776b080193
   - aad3885b3216
-  - 653e89d73fc4
   - 734abc7ac21d
+  - e08a7ad4378b
+  - 1790dcf3c32d
+  - e407b9da183a
+  - f5ea3ce9b9b0
+  - 4df8de2d0e48
+  - 6ea73833cf67
+  - 4317d3cb6cba
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unipept
   owner: galaxyp
   revisions:
+  - 75b3b3d0adbf
   - 34758ab8aaa4
-  - 7863f1abcdda
   - 9aaa46d45472
-  - 75b3b3d0adbf
+  - 7863f1abcdda
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: uniprot_rest_interface
   owner: bgruening
   revisions:
-  - af5eccf83605
-  - bfdc6a7ffd3a
   - 054483e27a35
+  - bfdc6a7ffd3a
+  - af5eccf83605
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/graphdisplay_data.yml b/staging.gvl.org.au/graphdisplay_data.yml
index 6f0271b6d..8262bd0cb 100644
--- a/staging.gvl.org.au/graphdisplay_data.yml
+++ b/staging.gvl.org.au/graphdisplay_data.yml
@@ -2,15 +2,15 @@ tools:
 - name: circos
   owner: iuc
   revisions:
-  - 4b519282a05b
-  - a64dc31ab7f2
-  - 290a11559985
   - ae9994cf526f
-  - 740057a5126d
-  - df7356989ac1
-  - c4bde687c846
   - fd59d783248a
+  - c4bde687c846
+  - 4b519282a05b
+  - 740057a5126d
   - 7f13dc906cb9
+  - df7356989ac1
+  - 290a11559985
+  - a64dc31ab7f2
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: draw_stacked_barplots
@@ -34,9 +34,9 @@ tools:
 - name: fastq_quality_boxplot
   owner: devteam
   revisions:
+  - f95284aa2946
   - 867ab348287d
   - 7cf5b1d072b5
-  - f95284aa2946
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: geneiobio
@@ -48,30 +48,30 @@ tools:
 - name: ggplot2_heatmap2
   owner: iuc
   revisions:
-  - '566197475670'
-  - 3b37b1b1c3a7
   - 53460afd5115
   - ca7cb0eaad62
+  - '566197475670'
+  - 3b37b1b1c3a7
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_heatmap
   owner: iuc
   revisions:
+  - 10515715c940
   - 3d059e9c2fba
   - d3a9e32672ec
-  - 10515715c940
-  - 391a4cc45fea
   - da4c086cff5b
+  - 391a4cc45fea
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_point
   owner: iuc
   revisions:
-  - 1acf88921176
   - e3a675da7fd0
-  - 3b12bf9b4b87
-  - 5fe1dc76176e
+  - 1acf88921176
   - 299307abd804
+  - 5fe1dc76176e
+  - 3b12bf9b4b87
   - d0fc8b746d57
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -84,37 +84,37 @@ tools:
 - name: graphlan_annotate
   owner: iuc
   revisions:
-  - cf1df6b2220a
   - 5d6f8f0bef7c
+  - cf1df6b2220a
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: graphlan
   owner: iuc
   revisions:
-  - a490b70e46fc
   - 8f62f666dcb6
+  - a490b70e46fc
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: histogram
   owner: devteam
   revisions:
-  - cdb9e89e2970
   - 6f134426c2b0
+  - cdb9e89e2970
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jbrowse
   owner: iuc
   revisions:
+  - 4542035c1075
   - 1cfc579079a6
+  - 667e17248bfe
+  - 112eb40ba6cf
+  - 17359b808b01
   - ca2def38369c
-  - 2bb2e07a7a21
   - a6e57ff585c0
+  - 2bb2e07a7a21
   - 6cd09d7b5f37
-  - 667e17248bfe
   - 836d1aa3e89a
-  - 4542035c1075
-  - 112eb40ba6cf
-  - 17359b808b01
   - fd5dbf0f732e
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -133,9 +133,9 @@ tools:
 - name: pathview
   owner: iuc
   revisions:
-  - fe154a7af404
-  - f1691de443a7
   - 03c13085aecc
+  - f1691de443a7
+  - fe154a7af404
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pe_histogram
@@ -147,15 +147,15 @@ tools:
 - name: plotly_ml_performance_plots
   owner: bgruening
   revisions:
-  - 85da91bbdbfb
   - 62e3a4e8c54c
+  - 85da91bbdbfb
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_parallel_coordinates_plot
   owner: bgruening
   revisions:
-  - 9958188c6195
   - 7b21a9b5922f
+  - 9958188c6195
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_regression_performance_plots
@@ -180,22 +180,22 @@ tools:
 - name: pygenometracks
   owner: iuc
   revisions:
-  - 4ac4e7083b7e
-  - 326a3db8d9d1
-  - 360df4999907
-  - a1abfa420d9d
-  - 59fd173ac850
   - 7dd841a32245
+  - a1abfa420d9d
+  - 4ac4e7083b7e
   - 2824d77cd8f8
+  - 360df4999907
   - 14e7c35f3d00
+  - 59fd173ac850
+  - 326a3db8d9d1
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: volcanoplot
   owner: iuc
   revisions:
-  - 73b8cb5bddcd
-  - 44608d0193ed
   - 83c573f2e73c
+  - 44608d0193ed
+  - 73b8cb5bddcd
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: weblogo3
diff --git a/staging.gvl.org.au/hca_single_cell.yml b/staging.gvl.org.au/hca_single_cell.yml
index 650427647..adc7fc479 100644
--- a/staging.gvl.org.au/hca_single_cell.yml
+++ b/staging.gvl.org.au/hca_single_cell.yml
@@ -8,8 +8,8 @@ tools:
 - name: gtf2gene_list
   owner: ebi-gxa
   revisions:
-  - 14b3f2a4523b
   - 1a642de6db01
+  - 14b3f2a4523b
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: retrieve_scxa
diff --git a/staging.gvl.org.au/hicexplorer.yml b/staging.gvl.org.au/hicexplorer.yml
index 02defab36..bf12ba029 100644
--- a/staging.gvl.org.au/hicexplorer.yml
+++ b/staging.gvl.org.au/hicexplorer.yml
@@ -2,36 +2,36 @@ tools:
 - name: hicexplorer_hicbuildmatrix
   owner: bgruening
   revisions:
-  - 9edf8894a22d
   - 29f66c353bcb
-  - ed2cca6b5de4
   - 921a2da49a0c
+  - ed2cca6b5de4
+  - 9edf8894a22d
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicfindtads
   owner: bgruening
   revisions:
+  - 78fb5e286609
+  - ec4b948dc6f0
   - d404277cc87a
   - 5746d61f0a91
-  - ec4b948dc6f0
-  - 78fb5e286609
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergematrixbins
   owner: bgruening
   revisions:
-  - 4d511437b1e5
   - 03dd3c16ae4e
   - 9e357a8b2ec3
   - 977dc15add20
+  - 4d511437b1e5
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicpca
   owner: bgruening
   revisions:
-  - 0ba4f56a3613
-  - 77919cc3618e
   - 41dbf4d162a2
+  - 77919cc3618e
+  - 0ba4f56a3613
   - 3b5b54ed6392
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -39,8 +39,8 @@ tools:
   owner: bgruening
   revisions:
   - b63363075c2e
-  - 5308ca68ef3d
   - 7babd8a46fe0
   - 9939786dd9c9
+  - 5308ca68ef3d
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/imaging.yml b/staging.gvl.org.au/imaging.yml
index e46831522..472af30ed 100644
--- a/staging.gvl.org.au/imaging.yml
+++ b/staging.gvl.org.au/imaging.yml
@@ -24,8 +24,8 @@ tools:
 - name: 2d_histogram_equalization
   owner: imgteam
   revisions:
-  - 77f7159d775a
   - 70316d792fc9
+  - 77f7159d775a
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_simple_filter
@@ -40,30 +40,30 @@ tools:
   revisions:
   - 85edbb7a436b
   - f3360fbeda64
-  - 10eed33aa9b2
   - b07f4839ca77
+  - 10eed33aa9b2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: binary2labelimage
   owner: imgteam
   revisions:
-  - 984358e43242
   - 6e65fd971e13
+  - 984358e43242
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: count_objects
   owner: imgteam
   revisions:
+  - 664232d2a3f7
   - 5bf8eb50b280
   - b58447a2eed2
-  - 664232d2a3f7
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_cellprofiler
   owner: bgruening
   revisions:
-  - 0e4dccaafef5
   - e917a2424690
+  - 0e4dccaafef5
   - eb6c08714244
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -77,16 +77,16 @@ tools:
 - name: cp_common
   owner: bgruening
   revisions:
-  - 670975e92458
   - 6070780813d9
+  - 670975e92458
   - e7273daa5ae2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_convert_objects_to_image
   owner: bgruening
   revisions:
-  - df3ad3ba5c6f
   - cdf8e3c57dae
+  - df3ad3ba5c6f
   - ef4aed1d34c4
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -94,40 +94,40 @@ tools:
   owner: bgruening
   revisions:
   - 6a7da2e5f696
-  - 2484086dee41
   - 5d28ac336861
+  - 2484086dee41
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_enhance_or_suppress_features
   owner: bgruening
   revisions:
+  - f2ed92b011a9
   - 11f177b1a59e
   - bace5a93a97c
-  - f2ed92b011a9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_export_to_spreadsheet
   owner: bgruening
   revisions:
+  - f8fa0f6718a3
   - f24c370e5ea4
   - d0178bdcd00e
-  - f8fa0f6718a3
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_gray_to_color
   owner: bgruening
   revisions:
-  - 3245681b2f6d
   - 31d195bedf6d
   - ad271f78a87a
+  - 3245681b2f6d
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_identify_primary_objects
   owner: bgruening
   revisions:
-  - 87d4d92d7487
-  - 993faa34333b
   - b6eec6087271
+  - 993faa34333b
+  - 87d4d92d7487
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_image_math
@@ -141,49 +141,49 @@ tools:
 - name: cp_mask_image
   owner: bgruening
   revisions:
-  - 3a05117669cf
-  - 667a513e67e4
   - b178453ea8d1
+  - 667a513e67e4
+  - 3a05117669cf
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_granularity
   owner: bgruening
   revisions:
-  - a1a961c46d4b
   - 2564f461de62
   - ac5bea85a391
+  - a1a961c46d4b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_area_occupied
   owner: bgruening
   revisions:
-  - 20dbb1f7ec7b
-  - a32c3f810ade
   - 91e03287f285
+  - a32c3f810ade
+  - 20dbb1f7ec7b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_intensity
   owner: bgruening
   revisions:
   - 8536b1ae0254
-  - b64af54c5c09
   - 5499dc6f8ac1
+  - b64af54c5c09
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_quality
   owner: bgruening
   revisions:
-  - e972e07c7845
-  - d3890df07463
   - 6f4715b8540a
+  - d3890df07463
+  - e972e07c7845
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_intensity
   owner: bgruening
   revisions:
-  - 980aed9e8fd5
   - e52c75a28c4b
   - 407925835dd9
+  - 980aed9e8fd5
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_size_shape
@@ -197,9 +197,9 @@ tools:
 - name: cp_measure_texture
   owner: bgruening
   revisions:
-  - b76841ee5560
   - 80b200ae516b
   - 035a58c7f54a
+  - b76841ee5560
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_overlay_outlines
@@ -220,8 +220,8 @@ tools:
   owner: bgruening
   revisions:
   - 33f4fa1413fb
-  - 27edbb90ab2b
   - 4ecf93628f97
+  - 27edbb90ab2b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_tile
@@ -247,7 +247,7 @@ tools:
 - name: overlay_segmentation_mask
   owner: imgteam
   revisions:
-  - 22e573b7dcb1
   - 8ad39f493587
+  - 22e573b7dcb1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/ivar.yml b/staging.gvl.org.au/ivar.yml
index 2b3033a55..7ce0408e6 100644
--- a/staging.gvl.org.au/ivar.yml
+++ b/staging.gvl.org.au/ivar.yml
@@ -3,54 +3,54 @@ tools:
   owner: iuc
   revisions:
   - 17f911830a8c
-  - d6e72da3ec35
-  - e319b5b65879
   - f362150bef41
+  - d6e72da3ec35
   - a38934e303b9
-  - 78bbd17d0703
-  - e4ee04da1c19
-  - 3e4f434a69c6
   - 1069f6db0a0e
+  - 3e4f434a69c6
+  - e4ee04da1c19
+  - e319b5b65879
+  - 78bbd17d0703
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_filtervariants
   owner: iuc
   revisions:
-  - 0135f1d487a0
-  - c88553ec696e
-  - 9537184d421f
-  - 2b95d5c04908
-  - 1ef5b6e3e09d
   - 8f8df367470d
-  - f91cfb73d369
   - 7fe36019c073
+  - f91cfb73d369
+  - 2b95d5c04908
+  - 1ef5b6e3e09d
+  - c88553ec696e
+  - 9537184d421f
   - 72ddd32392cd
+  - 0135f1d487a0
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_getmasked
   owner: iuc
   revisions:
-  - 2cf4a1cafc16
-  - ad0dc9f4c9e2
-  - d7e79eb3bcb3
   - fafb3d685fa9
+  - d7e79eb3bcb3
+  - ad0dc9f4c9e2
+  - 2cf4a1cafc16
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_removereads
   owner: iuc
   revisions:
-  - 43aac8d29685
-  - bd2a7d1316b9
+  - 7f1cfa4c0e32
+  - 69797fa273c3
+  - 94df24c6bc00
   - 6a1515bb0687
-  - 8c05afb547fa
-  - 8d36959b000d
+  - 43aac8d29685
   - ee2beb764a7b
-  - 94df24c6bc00
-  - 9eaadf03e0df
-  - 7f1cfa4c0e32
   - 3d18f8c3c0f6
+  - 8c05afb547fa
+  - 8d36959b000d
+  - bd2a7d1316b9
   - ee29337f905c
-  - 69797fa273c3
+  - 9eaadf03e0df
   - 28a6f1908fcc
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -58,32 +58,32 @@ tools:
   owner: iuc
   revisions:
   - 9f978da6528a
-  - bcaa0d571ce2
-  - c092052ed673
   - 364f4ffec275
-  - 8858fa037a15
-  - d37ede8589b2
   - 5671e1d3d5ee
-  - e3bb03cf207a
   - 5d6ed46cc101
-  - db536ad45f28
   - 0893a1dbb807
+  - c092052ed673
+  - 8858fa037a15
+  - e3bb03cf207a
+  - bcaa0d571ce2
+  - d37ede8589b2
   - cb903c9dc33d
+  - db536ad45f28
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_variants
   owner: iuc
   revisions:
-  - 38b91a3190cd
-  - 49236b03e4fd
+  - 230b05597996
   - 12d66d0d05ac
+  - ed28dd32141c
+  - 584beffa972b
+  - 49236b03e4fd
   - e1a015876aa9
+  - 38b91a3190cd
+  - f95f403841ad
   - c5c9f02b6167
-  - 584beffa972b
   - 3b6a16d82c1b
-  - ed28dd32141c
   - 045d6d00f606
-  - f95f403841ad
-  - 230b05597996
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/join_subtract_and_group.yml b/staging.gvl.org.au/join_subtract_and_group.yml
index 6bf3795b2..087735b66 100644
--- a/staging.gvl.org.au/join_subtract_and_group.yml
+++ b/staging.gvl.org.au/join_subtract_and_group.yml
@@ -2,19 +2,19 @@ tools:
 - name: datamash_reverse
   owner: iuc
   revisions:
-  - 0f1724dd59d2
-  - b8a457820315
   - 17e3b698dd52
+  - 0f1724dd59d2
   - f198773344e4
+  - b8a457820315
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: datamash_transpose
   owner: iuc
   revisions:
-  - ba0c40780ecf
-  - ac092723240d
-  - 22c2a1ac7ae3
   - 374cb875d38a
   - a513e3fbb4c5
+  - ac092723240d
+  - ba0c40780ecf
+  - 22c2a1ac7ae3
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/machine_learning.yml b/staging.gvl.org.au/machine_learning.yml
index 3df16de48..08fb4b8a0 100644
--- a/staging.gvl.org.au/machine_learning.yml
+++ b/staging.gvl.org.au/machine_learning.yml
@@ -3,98 +3,98 @@ tools:
   owner: bgruening
   revisions:
   - 522137aaa9c4
-  - 772e0e89fc68
   - 66d7efc06000
+  - 772e0e89fc68
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_model_config
   owner: bgruening
   revisions:
-  - 8a794e6d3388
-  - 4d81e3e2fb63
   - f22a9297440f
+  - 4d81e3e2fb63
+  - 8a794e6d3388
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_train_and_eval
   owner: bgruening
   revisions:
-  - 818f9b69d8a0
-  - e1317b5502fa
   - 2af1346e68c9
+  - 818f9b69d8a0
   - b6ef6d0cb6b7
   - f1b9a42d6809
+  - e1317b5502fa
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ml_visualization_ex
   owner: bgruening
   revisions:
-  - c80db5d6fd8c
+  - 1588f9076e32
   - 05143043ca13
-  - 947c2eacccb8
+  - c80db5d6fd8c
   - 8334dc98c48e
-  - 1588f9076e32
+  - 947c2eacccb8
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: model_prediction
   owner: bgruening
   revisions:
   - 29e4122c90de
-  - 25b46af53232
   - 9991c4ddde14
-  - 1552b8cb4a94
   - 83228baae3c5
+  - 1552b8cb4a94
+  - 25b46af53232
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_ensemble
   owner: bgruening
   revisions:
-  - a07ab242b0b5
-  - 060ca94ac049
   - 1a53edc4b438
-  - 53616c8b0865
+  - 060ca94ac049
+  - a07ab242b0b5
   - 841a6cc5fc58
   - f3dfa4bdf87e
+  - 53616c8b0865
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_generalized_linear
   owner: bgruening
   revisions:
+  - d4808d5b83da
   - 2fc89dcd41c8
-  - 91c4e3331208
   - 40f4447733b2
-  - d4808d5b83da
-  - 927586a18553
   - dc4b5fd604a6
+  - 91c4e3331208
+  - 927586a18553
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_searchcv
   owner: bgruening
   revisions:
-  - 25ab6b4e376e
-  - c6ae57f774c6
-  - 36e8d6d5d01b
   - 301e07345c93
+  - 25ab6b4e376e
   - e5a5ad882f1f
   - 7626ea9c2e1b
+  - c6ae57f774c6
+  - 36e8d6d5d01b
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_svm_classifier
   owner: bgruening
   revisions:
-  - 80852884053f
-  - 4ed102b922cb
-  - f9639b488779
+  - 02d2be90dedb
   - b7c3e9a3b954
+  - f9639b488779
   - 0630258dcf35
-  - 02d2be90dedb
+  - 4ed102b922cb
+  - 80852884053f
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_to_categorical
   owner: bgruening
   revisions:
-  - 61634a87efc7
   - caeb57858702
   - 14180f9c831e
   - ec69cbe34b73
+  - 61634a87efc7
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/mapping.yml b/staging.gvl.org.au/mapping.yml
index 4e83b6339..0643da413 100644
--- a/staging.gvl.org.au/mapping.yml
+++ b/staging.gvl.org.au/mapping.yml
@@ -4,13 +4,13 @@ tools:
   revisions:
   - f6877ad76b00
   - 749c918495f7
-  - cd659e8cc5fa
-  - 03e9b2fbc005
   - 017aba02828d
-  - 3ba8d4563129
   - 17062a0decb7
+  - cd659e8cc5fa
   - a6d65b0c67af
+  - 03e9b2fbc005
   - 937aa69e715f
+  - 3ba8d4563129
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bowtie_wrappers
@@ -30,10 +30,10 @@ tools:
   owner: devteam
   revisions:
   - dfd8b7f78c37
-  - 64f11cf59c6e
-  - 53646aaaafef
   - 3fe632431b68
+  - 53646aaaafef
   - e188dc7a68e6
+  - 64f11cf59c6e
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lastz_paired_reads
@@ -45,42 +45,42 @@ tools:
 - name: lastz
   owner: devteam
   revisions:
-  - 2ff111fac1d7
   - 3e1ea2facca6
-  - e7f19d6a9af8
   - 60afcc2c1d05
+  - 2ff111fac1d7
+  - e7f19d6a9af8
   - 37b497aa133f
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minimap2
   owner: iuc
   revisions:
-  - c0c2d0941de8
-  - be1d967337e4
-  - 037c6e54df11
-  - f54f5baedfdd
-  - 53c0b7a1a0c3
   - b3eab4b67562
-  - 09b53c1d4ab1
   - 3f4d6399997b
-  - 8c6cd2650d1f
+  - c0c2d0941de8
+  - 09b53c1d4ab1
   - 11a0d50a54e6
-  - 77b2770508f6
+  - 53c0b7a1a0c3
+  - 8c6cd2650d1f
+  - f54f5baedfdd
+  - be1d967337e4
+  - 037c6e54df11
   - 6b1e195506a3
+  - 77b2770508f6
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rna_starsolo
   owner: iuc
   revisions:
-  - ec9cbd6b9a49
-  - 13022c3d3076
-  - 1cd2511a396e
   - e403d27e8f24
   - 9ee34ba73ebf
-  - 79b885ce78d7
-  - 00fbfac99d39
+  - 13022c3d3076
   - 5ef7ec16b04f
+  - 1cd2511a396e
+  - 79b885ce78d7
   - b8f5f6e87f5c
+  - ec9cbd6b9a49
+  - 00fbfac99d39
   - 178bdbdb6d24
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/metagenomic_analysis.yml b/staging.gvl.org.au/metagenomic_analysis.yml
index 634d4ab5f..ae3540066 100644
--- a/staging.gvl.org.au/metagenomic_analysis.yml
+++ b/staging.gvl.org.au/metagenomic_analysis.yml
@@ -2,8 +2,8 @@ tools:
 - name: cat_bins
   owner: iuc
   revisions:
-  - 0094893f5001
   - 18676df0cb3a
+  - 0094893f5001
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cat_prepare
@@ -15,8 +15,8 @@ tools:
 - name: cat_summarise
   owner: iuc
   revisions:
-  - 7f1aaa1932d8
   - 388e6678fa98
+  - 7f1aaa1932d8
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collector_curve
@@ -34,10 +34,10 @@ tools:
 - name: dada2_assigntaxonomyaddspecies
   owner: iuc
   revisions:
-  - 5b5a7af9fbb4
-  - 63f86089423e
   - 7c2100246a2f
   - 76d3d2b10738
+  - 5b5a7af9fbb4
+  - 63f86089423e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_dada
@@ -45,8 +45,8 @@ tools:
   revisions:
   - 18a502a9d287
   - 84fd33a60b35
-  - 1c35dadbe76f
   - 96336c6a2bb7
+  - 1c35dadbe76f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_filterandtrim
@@ -54,17 +54,17 @@ tools:
   revisions:
   - f732237754fc
   - 34e55239e68b
-  - a9f4a217dcd6
   - addaf9d22850
+  - a9f4a217dcd6
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_learnerrors
   owner: iuc
   revisions:
-  - 8c202e741d68
-  - 75403243703a
-  - 0776d824d896
   - 04c15826a0b8
+  - 0776d824d896
+  - 75403243703a
+  - 8c202e741d68
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_makesequencetable
@@ -79,45 +79,45 @@ tools:
 - name: dada2_mergepairs
   owner: iuc
   revisions:
+  - 1d75bd0595e2
   - 84743da21318
-  - 5c865a382933
   - 306a40d4bb8f
-  - 1d75bd0595e2
+  - 5c865a382933
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotcomplexity
   owner: iuc
   revisions:
-  - ac72310b038a
   - 555ccac8a4c5
-  - 8daf4564ccda
+  - ac72310b038a
   - 78faebd0879c
+  - 8daf4564ccda
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotqualityprofile
   owner: iuc
   revisions:
-  - 7b8cb2b02978
   - a58e4a43f49c
-  - f947b4bb5107
   - d60df8727f59
+  - 7b8cb2b02978
+  - f947b4bb5107
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_removebimeradenovo
   owner: iuc
   revisions:
   - 7136e9ab70db
-  - 04144473e59e
-  - 1bc3657cd694
   - 7f3b59dee073
+  - 1bc3657cd694
+  - 04144473e59e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_seqcounts
   owner: iuc
   revisions:
-  - 9058d8943303
   - 19299bb1c6af
   - d943081510da
+  - 9058d8943303
   - 0a1224c4b781
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -131,24 +131,24 @@ tools:
 - name: gtdbtk_classify_wf
   owner: iuc
   revisions:
-  - 6501b5b33988
   - c4db8c4de66f
+  - 6501b5b33988
   - dbf1798c0dcc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiasm_meta
   owner: galaxy-australia
   revisions:
-  - fa35f1106d3e
   - 15dbb444df71
+  - fa35f1106d3e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_genefamilies_genus_level
   owner: iuc
   revisions:
+  - 654548ae1357
   - 6c84982ee6f7
   - 6d364c65c946
-  - 654548ae1357
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_join_tables
@@ -160,25 +160,25 @@ tools:
 - name: humann2_regroup_table
   owner: iuc
   revisions:
+  - bd7a9c6efb10
   - 6aad8ca3918b
   - e66ab198ec15
-  - bd7a9c6efb10
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_renorm_table
   owner: iuc
   revisions:
-  - d77397f09da1
   - c6676a890f50
   - b084117133af
+  - d77397f09da1
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_unpack_pathways
   owner: iuc
   revisions:
-  - 9704f1a3b32d
   - 7f208f1eb64f
   - cad93abecac9
+  - 9704f1a3b32d
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2
@@ -191,29 +191,29 @@ tools:
   owner: iuc
   revisions:
   - c409a495841f
-  - 79706f10d680
-  - 31c6d107e7a5
   - e88b731dad59
+  - 31c6d107e7a5
+  - 79706f10d680
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rename_table
   owner: iuc
   revisions:
-  - d24841f5c3d2
+  - 71ea608ddfa3
   - 094ad9c068af
-  - 172920f67a84
   - 714d5a28cc5c
-  - 71ea608ddfa3
+  - 172920f67a84
+  - d24841f5c3d2
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_renorm_table
   owner: iuc
   revisions:
-  - a4d7148ccee4
   - a293a742194f
-  - 12fb63b5f63f
-  - 4137b492233e
   - d7e9a3c41657
+  - 4137b492233e
+  - 12fb63b5f63f
+  - a4d7148ccee4
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_split_stratified_table
@@ -222,27 +222,27 @@ tools:
   - e2c71b852aba
   - 75bedfb2078b
   - cf87759761eb
+  - 6fcb8ac37a3e
   - 97f7bb0851e7
   - 64bc7acc22a9
-  - 6fcb8ac37a3e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_unpack_pathways
   owner: iuc
   revisions:
+  - 2d35528d2141
   - 4033827c76b8
   - 080ea153677c
-  - 5e5a999ffaa9
-  - 2d35528d2141
   - c82508e76ad1
+  - 5e5a999ffaa9
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann
   owner: iuc
   revisions:
   - 2cd76b089570
-  - 95bf7479d53c
   - 6b7622dda516
+  - 95bf7479d53c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan5
@@ -309,8 +309,8 @@ tools:
   owner: iuc
   revisions:
   - 328c607150ff
-  - e674066930b2
   - 4a9da2b6c2e3
+  - e674066930b2
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken2tax
@@ -362,8 +362,8 @@ tools:
 - name: krakentools_kreport2krona
   owner: iuc
   revisions:
-  - 88d274322340
   - 2deaada69b14
+  - 88d274322340
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mash_sketch
@@ -387,19 +387,19 @@ tools:
 - name: merge_metaphlan_tables
   owner: iuc
   revisions:
-  - 0270541aaf46
   - 4fd3b5d8706b
+  - 0270541aaf46
   - 2cff76cf35c6
-  - e073891b2afc
   - 27250f92a01a
+  - e073891b2afc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metabat2
   owner: iuc
   revisions:
   - 708abf08a626
-  - eb50e7eca3dc
   - 76bc4efa1aeb
+  - eb50e7eca3dc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metadegalaxy_pear_stats
@@ -472,13 +472,13 @@ tools:
 - name: metaphlan
   owner: iuc
   revisions:
-  - b89b0765695d
   - 1a6cdf55390f
-  - a92a632c4d9b
-  - a16313517e55
   - 2131d7dca455
+  - b89b0765695d
+  - a92a632c4d9b
   - 6dee4abadccb
   - ff8f55893e7d
+  - a16313517e55
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metawrapmg_binning
@@ -569,8 +569,8 @@ tools:
 - name: picrust_normalize_by_copy_number
   owner: iuc
   revisions:
-  - 3bd5f5afb9b1
   - 2e62e32d4f33
+  - 3bd5f5afb9b1
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_predict_metagenomes
@@ -600,11 +600,11 @@ tools:
 - name: staramr
   owner: nml
   revisions:
-  - 141afacabcfa
   - 4b9a8031ab74
   - 2fd4d4c9c5c2
-  - be818ae858e4
   - 3b22de20bd4b
+  - be818ae858e4
+  - 141afacabcfa
   - 4d83eccf5f81
   - aeaa20b96ef2
   tool_panel_section_label: Metagenomic Analysis
@@ -636,8 +636,8 @@ tools:
 - name: vsearch
   owner: iuc
   revisions:
-  - b3c7199d8786
   - 9495df9dd6ef
+  - b3c7199d8786
   - 576963db5f1b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/mothur.yml b/staging.gvl.org.au/mothur.yml
index 2ec77e04a..0408e2bb1 100644
--- a/staging.gvl.org.au/mothur.yml
+++ b/staging.gvl.org.au/mothur.yml
@@ -652,8 +652,8 @@ tools:
 - name: mothur_screen_seqs
   owner: iuc
   revisions:
-  - f4d7d5755f01
   - 63b74bfc8052
+  - f4d7d5755f01
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_sens_spec
@@ -707,8 +707,8 @@ tools:
 - name: mothur_sub_sample
   owner: iuc
   revisions:
-  - e866e31f6da3
   - 67cb43432196
+  - e866e31f6da3
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_qual
@@ -732,8 +732,8 @@ tools:
 - name: mothur_summary_single
   owner: iuc
   revisions:
-  - 2344ed181ae6
   - 72be09dfd803
+  - 2344ed181ae6
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_tax
diff --git a/staging.gvl.org.au/multiple_alignments.yml b/staging.gvl.org.au/multiple_alignments.yml
index ab08d4758..e174b4428 100644
--- a/staging.gvl.org.au/multiple_alignments.yml
+++ b/staging.gvl.org.au/multiple_alignments.yml
@@ -3,36 +3,36 @@ tools:
   owner: galaxy-australia
   revisions:
   - 48c13389050d
-  - cd07731e4434
-  - bdfbaf0c10aa
+  - 9eeb13a92d79
   - 6ae5a7b5a0a2
+  - 2263989660f5
   - 9baa871cb1d1
+  - 8b67dd48fec1
   - 94b8c6013083
-  - 9eeb13a92d79
+  - 9422c5a87ee2
+  - cd07731e4434
   - 80f03df2e2ce
+  - bdfbaf0c10aa
   - a74dbfee5a86
-  - 9422c5a87ee2
-  - 2263989660f5
-  - 8b67dd48fec1
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cactus_export
   owner: galaxy-australia
   revisions:
+  - '764845535798'
+  - f14193ec1f50
+  - f0af8936ed41
   - bc3831dd65c1
-  - aaa0d6a8b808
-  - 3ff17bad4006
   - fc2e49f91e52
-  - c18157c68134
-  - f0af8936ed41
   - d7ce0ec78e51
-  - 2e093badc689
-  - '764845535798'
-  - f14193ec1f50
-  - be78f13134e2
   - d390fe1567dc
   - 4a60927aaca5
+  - c18157c68134
+  - be78f13134e2
   - 5abf2c2249aa
+  - aaa0d6a8b808
+  - 2e093badc689
+  - 3ff17bad4006
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cdhit
@@ -44,15 +44,15 @@ tools:
 - name: chromeister
   owner: iuc
   revisions:
-  - e483be1014b6
   - b768cc4cca40
+  - e483be1014b6
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: clustalw
   owner: devteam
   revisions:
-  - d6694932c5e0
   - 5b097fde95dd
+  - d6694932c5e0
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gecko
@@ -64,12 +64,12 @@ tools:
 - name: mafft
   owner: rnateam
   revisions:
-  - c5908940967d
+  - 15974dd17515
   - a65296ffb4a0
-  - 6f28e90db932
   - f1a5908ea2cb
-  - 15974dd17515
+  - 6f28e90db932
   - f0d493f8f84f
+  - c5908940967d
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_delta_filter
@@ -82,29 +82,29 @@ tools:
 - name: mummer_dnadiff
   owner: iuc
   revisions:
-  - c9685bc0407c
   - 60698466facd
+  - c9685bc0407c
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummer
   owner: iuc
   revisions:
-  - 48823c9635a4
   - bcd65de9725b
+  - 48823c9635a4
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummerplot
   owner: iuc
   revisions:
-  - ebe3b0f84de9
   - 4fc0cb2ac8ae
+  - ebe3b0f84de9
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_nucmer
   owner: iuc
   revisions:
-  - e18267f90096
   - 636b049e6141
+  - e18267f90096
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_show_coords
diff --git a/staging.gvl.org.au/nanopore.yml b/staging.gvl.org.au/nanopore.yml
index fc6563b0b..cd6bdf538 100644
--- a/staging.gvl.org.au/nanopore.yml
+++ b/staging.gvl.org.au/nanopore.yml
@@ -8,42 +8,42 @@ tools:
 - name: medaka_consensus_pipeline
   owner: iuc
   revisions:
+  - a7228a7ea146
+  - 79e9a869f40e
   - 0e9e7fcdd543
-  - 72b5e9dda577
   - cb34f00cc10f
+  - 72b5e9dda577
   - fc8804320156
-  - a7228a7ea146
-  - 79e9a869f40e
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_consensus
   owner: iuc
   revisions:
-  - fa11aa8103b2
+  - 18505fe2bdb1
   - db25ec99c3ea
   - d6cddc06aeae
-  - 18505fe2bdb1
+  - fa11aa8103b2
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_variant
   owner: iuc
   revisions:
-  - 2bf63b38ee9b
-  - eb746fa6f514
-  - cc36773a3681
-  - 0f5f4a208660
   - 43815fa60f3a
+  - cc36773a3681
   - ec699520444c
+  - 2bf63b38ee9b
+  - 19f3b583a9b3
+  - 0f5f4a208660
   - edf6d4003fad
+  - eb746fa6f514
   - 222669c4afb6
-  - 19f3b583a9b3
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanocompore_sampcomp
   owner: iuc
   revisions:
-  - c0fb573c1e8d
   - b833eff63b10
+  - c0fb573c1e8d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanofilt
@@ -55,17 +55,17 @@ tools:
 - name: nanoplot
   owner: iuc
   revisions:
-  - 645159bcee2d
-  - edbb6c5028f5
   - 0f1c34698076
+  - 645159bcee2d
   - a3c4fe6f49ab
+  - edbb6c5028f5
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_eventalign
   owner: bgruening
   revisions:
-  - 85a394edc247
   - 3b6f94fc7e1d
+  - 85a394edc247
   - d219b6d8158a
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -80,25 +80,25 @@ tools:
 - name: nanopolish_polya
   owner: bgruening
   revisions:
+  - 4857d5bcce52
   - d376944466bf
   - 449e9aeded2d
-  - 4857d5bcce52
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_variants
   owner: bgruening
   revisions:
-  - de5b3d8f5b90
-  - bec636361cfd
   - a3afc5f0a96c
+  - bec636361cfd
+  - de5b3d8f5b90
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: porechop
   owner: iuc
   revisions:
   - 5f76b20953e5
-  - 93d623d9979c
   - 543cbeef3949
+  - 93d623d9979c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_events
@@ -117,8 +117,8 @@ tools:
 - name: poretools_hist
   owner: iuc
   revisions:
-  - 5a82eb9e1b89
   - 47936349f3e9
+  - 5a82eb9e1b89
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_nucdist
@@ -150,8 +150,8 @@ tools:
 - name: poretools_squiggle
   owner: iuc
   revisions:
-  - 34553d0caa5e
   - ce8af9373061
+  - 34553d0caa5e
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_stats
@@ -181,8 +181,8 @@ tools:
 - name: poretools_yield_plot
   owner: iuc
   revisions:
-  - 64a83664b814
   - ca22d8497db5
+  - 64a83664b814
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pycoqc
diff --git a/staging.gvl.org.au/none.yml b/staging.gvl.org.au/none.yml
index 9803c2e11..cc914737d 100644
--- a/staging.gvl.org.au/none.yml
+++ b/staging.gvl.org.au/none.yml
@@ -21,8 +21,8 @@ tools:
 - name: bcftools_plugin_frameshifts
   owner: iuc
   revisions:
-  - 96d2000977ab
   - 58341ad4fb42
+  - 96d2000977ab
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blast_datatypes
@@ -52,17 +52,17 @@ tools:
 - name: data_manager_bakta
   owner: iuc
   revisions:
-  - 3e73c97f025d
   - adfd6bf710bd
   - d74850cf4e42
+  - 3e73c97f025d
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bowtie2_index_builder
   owner: devteam
   revisions:
-  - 83da94c0e4a6
   - 1586b111d2a3
   - 9dd107db92c2
+  - 83da94c0e4a6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_build_bracken_database
@@ -82,8 +82,8 @@ tools:
 - name: data_manager_bwa_mem_index_builder
   owner: devteam
   revisions:
-  - 9e993022c762
   - 46066df8813d
+  - 9e993022c762
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwameth_index_builder
@@ -101,30 +101,30 @@ tools:
 - name: data_manager_dada2
   owner: iuc
   revisions:
+  - 5711fc06a63e
   - 38ccd4589990
   - 48a42ca61006
-  - 5711fc06a63e
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_diamond_database_builder
   owner: bgruening
   revisions:
-  - 5a0d0bee4f8d
   - 4a08b7b76b78
+  - 5a0d0bee4f8d
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_eggnog_mapper_abspath
   owner: galaxyp
   revisions:
-  - fcb8bdd124f4
   - 81a286e4c5a2
+  - fcb8bdd124f4
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_busco
   owner: iuc
   revisions:
-  - 2b4526fdf7fb
   - 15b97817550a
+  - 2b4526fdf7fb
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_genome_dbkeys_all_fasta
@@ -143,17 +143,17 @@ tools:
 - name: data_manager_gatk_picard_index_builder
   owner: devteam
   revisions:
-  - 6287d0ee459e
   - 9a40272f56d0
+  - 6287d0ee459e
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gemini_database_downloader
   owner: iuc
   revisions:
+  - 5bcf0e24f42c
   - 27a6a256cd23
-  - 172815da3d41
   - b4b2b284230a
-  - 5bcf0e24f42c
+  - 172815da3d41
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gtdbtk_database_installer
@@ -178,9 +178,9 @@ tools:
 - name: data_manager_humann_database_downloader
   owner: iuc
   revisions:
-  - 19bbd19b74b3
-  - 87febc68b45b
   - fea85c467896
+  - 87febc68b45b
+  - 19bbd19b74b3
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_interproscan
@@ -212,8 +212,8 @@ tools:
   owner: iuc
   revisions:
   - 9c43baa60906
-  - 5fe20c915fa6
   - 4ba60cb14cb0
+  - 5fe20c915fa6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mitos
@@ -225,33 +225,33 @@ tools:
 - name: data_manager_mothur_toolsuite
   owner: iuc
   revisions:
-  - 9d09724f2bf1
   - 0db22932bc39
   - aec831b54a5b
+  - 9d09724f2bf1
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_pangolearn
   owner: iuc
   revisions:
-  - 6e24e79d3d69
-  - df30a2f1db55
   - ed7a967cb11b
   - 29c738066906
+  - df30a2f1db55
+  - 6e24e79d3d69
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_sam_fasta_index_builder
   owner: devteam
   revisions:
   - ad90c2da4f38
-  - 3e4d45aca422
   - 1865e693d8b2
+  - 3e4d45aca422
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_snpeff
   owner: iuc
   revisions:
-  - d107d20dc6bd
   - def511e8e005
+  - d107d20dc6bd
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_sortmerna_database_downloader
@@ -263,8 +263,8 @@ tools:
 - name: data_manager_star_index_builder
   owner: iuc
   revisions:
-  - c520a52b5174
   - d63c1442407f
+  - c520a52b5174
   - 64deddb6a8ec
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -1024,15 +1024,15 @@ tools:
 - name: rdock_rbcavity
   owner: bgruening
   revisions:
-  - 7e5c2e4bc227
   - 744a777e9f90
+  - 7e5c2e4bc227
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rdock_rbdock
   owner: bgruening
   revisions:
-  - a22969b08177
   - e4b7d1507a75
+  - a22969b08177
   - c362398df83b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/phylogenetics.yml b/staging.gvl.org.au/phylogenetics.yml
index 84546f802..60aa238aa 100644
--- a/staging.gvl.org.au/phylogenetics.yml
+++ b/staging.gvl.org.au/phylogenetics.yml
@@ -33,87 +33,87 @@ tools:
 - name: hyphy_absrel
   owner: iuc
   revisions:
-  - a6619171428e
-  - b89cac5156ec
-  - f04a1264e2a2
   - 8834daeb9892
   - 81e66674859e
+  - 3b8b5bde0bd9
+  - b89cac5156ec
+  - a6619171428e
+  - 6a457678efcb
+  - cce7b18495e4
+  - d033ffc1c161
   - 26de3a7b1cb9
-  - f73435dc282b
+  - '841557158611'
+  - f04a1264e2a2
   - 3f59ebfbfe3d
   - d7c7ef3353fe
+  - c78f3d7dd1db
   - 5a7c56a5cc08
   - 107d3ba7024a
-  - cce7b18495e4
-  - 6a457678efcb
-  - 3b8b5bde0bd9
-  - d033ffc1c161
-  - c78f3d7dd1db
-  - '841557158611'
+  - f73435dc282b
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hyphy_gard
   owner: iuc
   revisions:
-  - 02b8758214b0
-  - e75442c7f4da
-  - b0af57c1a968
-  - 6283babe736e
-  - 6223845127ea
+  - 5b777002c2de
+  - 659517798cc4
   - 3b96e92e8ec3
-  - aa8cc71438cf
-  - df47d4845b62
   - 88c4aa435ded
-  - 4755f52427c4
-  - 7a2092844346
-  - 659517798cc4
-  - 5fcd1ece3a6e
   - a185b079b095
+  - 6283babe736e
+  - df47d4845b62
   - 6a726db04d4b
-  - 5b777002c2de
+  - 7a2092844346
+  - aa8cc71438cf
+  - 5fcd1ece3a6e
+  - e75442c7f4da
+  - b0af57c1a968
+  - 02b8758214b0
+  - 4755f52427c4
+  - 6223845127ea
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: iqtree
   owner: iuc
   revisions:
+  - 524d31add34a
   - 9b892d7f82cc
+  - b8476e82ac20
   - d1c340a5664b
-  - 524d31add34a
   - f97743d52b87
-  - b8476e82ac20
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nextclade
   owner: iuc
   revisions:
-  - daddf188c13f
   - 128ba8da994f
   - feb40665d7cd
   - 9e10ba792be2
+  - daddf188c13f
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pangolin
   owner: iuc
   revisions:
-  - abf6dbe8c9d7
+  - ca0d8cf80567
+  - 42a174224817
+  - 14ae456b8cc5
+  - 2f1019071464
+  - 5f8727ff21e7
+  - 81804a978fc0
+  - b6abccb1f25b
+  - 7bb8726be37c
+  - 03ed9524dcd1
+  - b7e297c2ede6
+  - ca337cce3888
+  - 36912871ccdc
   - 83a69484cb87
+  - 437e28791761
   - 2fa9d4f1b48f
   - 3a43c3982401
-  - 7bb8726be37c
+  - abf6dbe8c9d7
   - a2099fb98cdb
-  - 437e28791761
-  - 81804a978fc0
-  - 42a174224817
-  - 03ed9524dcd1
-  - 36912871ccdc
-  - ca337cce3888
-  - ca0d8cf80567
   - 9d61d3fa046c
-  - 2f1019071464
-  - b7e297c2ede6
-  - 5f8727ff21e7
-  - 14ae456b8cc5
-  - b6abccb1f25b
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyml
@@ -126,22 +126,22 @@ tools:
 - name: raxml
   owner: iuc
   revisions:
-  - 29ff6a849eac
+  - ea30d3089354
   - a4b71be30c3c
-  - b1e68bbe4cef
-  - 73a469f7dc96
   - ba29b5e2a4be
-  - ea30d3089354
+  - 73a469f7dc96
+  - b1e68bbe4cef
+  - 29ff6a849eac
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: roary
   owner: iuc
   revisions:
-  - 809e42326fc2
-  - f1ccc8a6eb05
   - 15ac71df11a0
+  - e88a7de55d6e
+  - f1ccc8a6eb05
+  - 809e42326fc2
   - dbe2b2204555
   - 91887494eb97
-  - e88a7de55d6e
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/picard.yml b/staging.gvl.org.au/picard.yml
index 243ce65a6..21cf1333b 100644
--- a/staging.gvl.org.au/picard.yml
+++ b/staging.gvl.org.au/picard.yml
@@ -2,13 +2,13 @@ tools:
 - name: picard
   owner: devteam
   revisions:
+  - f6ced08779c4
   - 881d7645d1bf
   - 1aac2a13842a
-  - 7d34178f2812
-  - a1f0b3f4b781
+  - fc288950c3b7
   - f9242e01365a
+  - 7d34178f2812
   - b502c227b5e6
-  - f6ced08779c4
-  - fc288950c3b7
+  - a1f0b3f4b781
   tool_panel_section_label: Picard
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/proteomic_ai.yml b/staging.gvl.org.au/proteomic_ai.yml
index c776de9b3..a0aca66ff 100644
--- a/staging.gvl.org.au/proteomic_ai.yml
+++ b/staging.gvl.org.au/proteomic_ai.yml
@@ -2,14 +2,14 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
-  - e4a053d67e24
-  - 7fbec959cf2b
-  - ca90d17ff51b
-  - eb085b3dbaf8
   - a58f7eb0df2c
-  - 5b85006245f3
-  - 3bd420ec162d
-  - c0e71cb2bd1b
   - d00e15139065
+  - c0e71cb2bd1b
+  - 7fbec959cf2b
+  - 3bd420ec162d
+  - e4a053d67e24
+  - 5b85006245f3
+  - eb085b3dbaf8
+  - ca90d17ff51b
   tool_panel_section_label: Proteomic AI
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/proteomics.yml b/staging.gvl.org.au/proteomics.yml
index 1443cdc63..81f8e75a8 100644
--- a/staging.gvl.org.au/proteomics.yml
+++ b/staging.gvl.org.au/proteomics.yml
@@ -3,11 +3,11 @@ tools:
   owner: galaxyp
   revisions:
   - b574b84afc4d
-  - f28ad96b76dc
-  - ece627528a78
   - 277dc652246e
-  - b18329a8ac14
   - 0a18ac48ac53
+  - b18329a8ac14
+  - f28ad96b76dc
+  - ece627528a78
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_combine
@@ -15,36 +15,36 @@ tools:
   revisions:
   - e988563cc6e5
   - e215f71d7983
-  - b41107d8fe89
   - bf06d196e23d
   - 525f201b86c1
+  - b41107d8fe89
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_data_exporter
   owner: galaxyp
   revisions:
-  - bb6397b94018
   - 4fbffddde8cd
+  - bb6397b94018
   - 8da3511c9467
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_filtering
   owner: galaxyp
   revisions:
+  - 528fb09022be
   - b8c79e70516d
   - a8157342d9a3
   - f23d67e28cc8
-  - 528fb09022be
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_mz_images
   owner: galaxyp
   revisions:
-  - 59e85306eae5
-  - a69865da6f80
-  - 80600735685d
   - a95a82eb4d50
+  - 80600735685d
+  - a69865da6f80
   - 25b83cbd596a
+  - 59e85306eae5
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_preprocessing
@@ -53,33 +53,33 @@ tools:
   - 798da6bdff3d
   - ed9ed1e6cca2
   - f1897eb07081
-  - e0669b1854b1
   - 611d80c0e29d
+  - e0669b1854b1
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_quality_report
   owner: galaxyp
   revisions:
-  - a7fb9b395ddf
   - 5a35e3a8d013
   - 74b61bf5bc4b
+  - a7fb9b395ddf
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_segmentations
   owner: galaxyp
   revisions:
-  - 82f6c2f4332d
   - cc430977c8ff
   - df2187f9013b
+  - 82f6c2f4332d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_spectra_plots
   owner: galaxyp
   revisions:
-  - 10566783d718
   - c5aa9fca18c6
-  - d2483487e077
+  - 10566783d718
   - 1693b2126f30
+  - d2483487e077
   - 043f9c91f686
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -98,9 +98,9 @@ tools:
 - name: diann
   owner: galaxyp
   revisions:
-  - 9fa3dbf06f17
   - bf0728e000cd
   - ae4dc0c041f9
+  - 9fa3dbf06f17
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: diapysef
@@ -119,9 +119,9 @@ tools:
 - name: encyclopedia_quantify
   owner: galaxyp
   revisions:
+  - 0fa397f4f40b
   - 1c5cbf8f79ce
   - 4081e4faa4ab
-  - 0fa397f4f40b
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_searchtolib
@@ -134,8 +134,8 @@ tools:
 - name: encyclopedia_walnut
   owner: galaxyp
   revisions:
-  - d6a4dfdad269
   - ce1a157a41bd
+  - d6a4dfdad269
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: flashlfq
@@ -147,45 +147,45 @@ tools:
 - name: maldi_quant_peak_detection
   owner: galaxyp
   revisions:
+  - 160538a890a6
   - e66f552a3c47
   - d286ff4600dd
-  - 160538a890a6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maldi_quant_preprocessing
   owner: galaxyp
   revisions:
-  - 71411ac28268
   - 60ee8c592b13
+  - 71411ac28268
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maxquant_mqpar
   owner: galaxyp
   revisions:
-  - 9cb7dcc07dae
   - 3fc2116ac6d9
+  - 9cb7dcc07dae
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maxquant
   owner: galaxyp
   revisions:
-  - 2133b0be850a
-  - 4d17fcdeb8ff
-  - 97a7f34fcb6a
   - 37d669de2828
+  - 1f39c833f65f
   - 837224ad1694
-  - e42225f8a659
+  - 4d17fcdeb8ff
   - f522c08e900c
   - 8934bc76bb52
   - 7f432d87c82c
-  - 1f39c833f65f
+  - 2133b0be850a
+  - 97a7f34fcb6a
+  - e42225f8a659
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_db
   owner: galaxyp
   revisions:
-  - 0ed07016d668
   - '860429737408'
+  - 0ed07016d668
   - 85b8866f06d7
   - a72ac2c7cc5b
   tool_panel_section_label: Proteomics
@@ -193,26 +193,26 @@ tools:
 - name: metaquantome_expand
   owner: galaxyp
   revisions:
-  - 1974224d63c2
   - 352b37c66d97
-  - 4187b6df1a40
+  - 1974224d63c2
   - 990b4560ead7
+  - 4187b6df1a40
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_filter
   owner: galaxyp
   revisions:
-  - 99450519d727
+  - 4f359549383c
   - a1daafbf5233
   - deaf035bbe9f
-  - 4f359549383c
+  - 99450519d727
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_sample
   owner: galaxyp
   revisions:
-  - 40ca115438d2
   - c7745841de24
+  - 40ca115438d2
   - e79958768a2c
   - c1343e3389ca
   tool_panel_section_label: Proteomics
@@ -220,18 +220,18 @@ tools:
 - name: metaquantome_stat
   owner: galaxyp
   revisions:
+  - d2eac53666f0
+  - da986f83631b
   - b648e45fd3cf
   - d46d64e7964d
-  - da986f83631b
-  - d2eac53666f0
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_viz
   owner: galaxyp
   revisions:
+  - 944b43462104
   - eb811f3018ea
   - 1199751329b0
-  - 944b43462104
   - 9bf325045235
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -250,131 +250,131 @@ tools:
 - name: msstats
   owner: galaxyp
   revisions:
+  - b7034eff0db1
+  - 28434abe6c5c
   - 8212e342e482
   - 593839e1f2c3
-  - 28434abe6c5c
-  - b7034eff0db1
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msstatstmt
   owner: galaxyp
   revisions:
-  - bd1535813cfe
   - a5e394b36d87
+  - bd1535813cfe
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_consensusid
   owner: galaxyp
   revisions:
   - 01dbaf6a57e0
-  - 4e77b8f12cd3
   - 8960fb791701
+  - 4e77b8f12cd3
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_decoydatabase
   owner: galaxyp
   revisions:
-  - 25529df60a81
   - 370141bc0da3
+  - 25529df60a81
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_falsediscoveryrate
   owner: galaxyp
   revisions:
-  - 518b1730cf2a
-  - f7fef900f5b2
   - 9cdf15d3cfc8
+  - 518b1730cf2a
   - c9eff69a7c62
+  - f7fef900f5b2
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_featurefindermultiplex
   owner: galaxyp
   revisions:
-  - ca88bd28f116
   - dff6c756eee5
+  - ca88bd28f116
   - 5e948629bc73
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fidoadapter
   owner: galaxyp
   revisions:
-  - 658494a2cb00
   - 41859bbdc16e
+  - 658494a2cb00
   - 890025d6e426
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileconverter
   owner: galaxyp
   revisions:
+  - 9b7977080f6d
   - 6634cad7d797
   - 5ad0b5bf1deb
-  - 9b7977080f6d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filefilter
   owner: galaxyp
   revisions:
-  - 0bb5056cb775
-  - 05d5e1ddc985
   - d6878d27f051
+  - 05d5e1ddc985
+  - 0bb5056cb775
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileinfo
   owner: galaxyp
   revisions:
   - 5ad830edc021
-  - 52ba9695e752
   - febd569ad26f
+  - 52ba9695e752
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filemerger
   owner: galaxyp
   revisions:
-  - 39e8fde08881
   - 92352a475eed
   - 27cba4c5fc42
+  - 39e8fde08881
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_highresprecursormasscorrector
   owner: galaxyp
   revisions:
+  - 9e26f5c770f8
   - 0efbc235f314
   - d413dc49d650
-  - 9e26f5c770f8
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idconflictresolver
   owner: galaxyp
   revisions:
   - c28f13cab67a
-  - 3720e349ba2a
   - 8a04ed1c1d1b
+  - 3720e349ba2a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idfilter
   owner: galaxyp
   revisions:
   - c55dddc5844a
-  - 382cde407f81
   - ca799a7246e7
   - c427a8628cbe
+  - 382cde407f81
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmapper
   owner: galaxyp
   revisions:
-  - b5d0905419da
-  - 39caaa778d2e
   - 8ddb7bab1138
+  - 39caaa778d2e
+  - b5d0905419da
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmerger
   owner: galaxyp
   revisions:
-  - 1c5f31b8d632
-  - 18f93351f8b6
   - f817513840a9
+  - 1c5f31b8d632
   - 8d4db262964c
+  - 18f93351f8b6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idposteriorerrorprobability
@@ -388,9 +388,9 @@ tools:
 - name: openms_idscoreswitcher
   owner: galaxyp
   revisions:
+  - 0e52c85f3b15
   - be74a8cd7d66
   - 476b5e296979
-  - 0e52c85f3b15
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msfraggeradapter
@@ -403,9 +403,9 @@ tools:
 - name: openms_msgfplusadapter
   owner: galaxyp
   revisions:
-  - c18d8efa4474
   - a407b6790342
   - 2b2a7551a857
+  - c18d8efa4474
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_multiplexresolver
@@ -418,9 +418,9 @@ tools:
 - name: openms_mztabexporter
   owner: galaxyp
   revisions:
-  - ee860980edc6
   - bf32e0bcf554
   - 8098330f6d91
+  - ee860980edc6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathanalyzer
@@ -433,36 +433,36 @@ tools:
 - name: openms_openswathassaygenerator
   owner: galaxyp
   revisions:
-  - 2a9ff56cb279
   - 8c01da82292c
+  - 2a9ff56cb279
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathconfidencescoring
   owner: galaxyp
   revisions:
-  - e8f64a7dc470
   - 1bf940c18d93
+  - e8f64a7dc470
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdecoygenerator
   owner: galaxyp
   revisions:
-  - f861ec9fbe59
   - 9f505cd4428f
+  - f861ec9fbe59
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdiaprescoring
   owner: galaxyp
   revisions:
-  - 0bddef8d144e
   - d4396637b9f5
+  - 0bddef8d144e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathfilesplitter
   owner: galaxyp
   revisions:
-  - 89254095cbf6
   - 8b814eafce2c
+  - 89254095cbf6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathmzmlfilecacher
@@ -475,8 +475,8 @@ tools:
 - name: openms_openswathrtnormalizer
   owner: galaxyp
   revisions:
-  - 18826fb8e5db
   - 6e8cc5ed2a9b
+  - 18826fb8e5db
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathworkflow
@@ -497,17 +497,17 @@ tools:
 - name: openms_peptideindexer
   owner: galaxyp
   revisions:
-  - 5182338d5e7c
   - dd173849c3d8
-  - e039cc5c7aed
   - 539a3a4dcc9e
+  - 5182338d5e7c
+  - e039cc5c7aed
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_proteinquantifier
   owner: galaxyp
   revisions:
-  - 16026cdb1330
   - 8a45fd5a608a
+  - 16026cdb1330
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_targetedfileconverter
@@ -519,8 +519,8 @@ tools:
 - name: openms_textexporter
   owner: galaxyp
   revisions:
-  - 9020199dba0a
   - d063e2fe4ba4
+  - 9020199dba0a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_xmlvalidator
@@ -532,36 +532,36 @@ tools:
 - name: openms_xtandemadapter
   owner: galaxyp
   revisions:
-  - 7f6a1f27553e
   - fb52e95a370c
   - c8b225c69a7f
+  - 7f6a1f27553e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pep_pointer
   owner: galaxyp
   revisions:
-  - a6282baa8c6f
   - 073a2965e3b2
+  - a6282baa8c6f
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: peptide_genomic_coordinate
   owner: galaxyp
   revisions:
-  - cb0378d2d487
   - 5f49ffce52cb
+  - cb0378d2d487
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: peptideshaker
   owner: galaxyp
   revisions:
-  - 3634c90301af
+  - 3ec27b4cee7c
   - 1beff3ddce58
-  - a72c48001f7c
   - 7fdd9119cc4f
-  - 3ec27b4cee7c
+  - da885ca16cb2
   - 07ff622ec007
+  - a72c48001f7c
+  - 3634c90301af
   - 943a34df6047
-  - da885ca16cb2
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: percolator
@@ -615,9 +615,9 @@ tools:
 - name: uniprotxml_downloader
   owner: galaxyp
   revisions:
-  - 1a5690a5eedc
   - 12692567c7f9
   - a371252a2cf6
+  - 1a5690a5eedc
   - 265c35540faa
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/rad_seq.yml b/staging.gvl.org.au/rad_seq.yml
index 5104329d1..10e90b6e7 100644
--- a/staging.gvl.org.au/rad_seq.yml
+++ b/staging.gvl.org.au/rad_seq.yml
@@ -2,12 +2,12 @@ tools:
 - name: stacks2_clonefilter
   owner: iuc
   revisions:
-  - 2f1d464ebfd2
-  - 289b7d6b69a4
-  - e345aadf914f
   - 110a346daf36
+  - 2f1d464ebfd2
   - cd5f98911089
+  - e345aadf914f
   - 42201b90e3f4
+  - 289b7d6b69a4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_clonefilter
@@ -20,11 +20,11 @@ tools:
   owner: iuc
   revisions:
   - 0cd2df8af811
-  - 42d9087b4789
-  - c207119ba5f6
-  - 8501601a118d
   - 0345dbaaa79b
+  - 42d9087b4789
   - fcce77c09289
+  - 8501601a118d
+  - c207119ba5f6
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_cstacks
@@ -36,12 +36,12 @@ tools:
 - name: stacks2_denovomap
   owner: iuc
   revisions:
+  - ad5ab22ffe24
   - 89eb29319bf4
   - 04db7fd6b238
-  - ad5ab22ffe24
+  - 421c33b8bf17
   - 33486216eec0
   - 405a212b32ab
-  - 421c33b8bf17
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_denovomap
@@ -53,12 +53,12 @@ tools:
 - name: stacks2_gstacks
   owner: iuc
   revisions:
-  - 1d839ead7ad3
-  - fa51dc5e8386
+  - f6e91108b7b1
   - 7370bb65bad4
   - 7b72fde3d27e
-  - f6e91108b7b1
   - eb784fa07f80
+  - 1d839ead7ad3
+  - fa51dc5e8386
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_gstacks
@@ -73,9 +73,9 @@ tools:
   - c9b77ced9a78
   - d30e36c48c93
   - 8a55d29c8fcf
-  - 3d70c2996730
-  - a3e86cd9cac7
   - 1544278c272e
+  - a3e86cd9cac7
+  - 3d70c2996730
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_kmerfilter
@@ -87,12 +87,12 @@ tools:
 - name: stacks2_populations
   owner: iuc
   revisions:
-  - b242deb58952
-  - 887cf585cafc
   - 564c33e5c3e3
-  - e2db212d64ad
-  - a5969aa9347e
   - 7b881f5f5ad5
+  - 887cf585cafc
+  - a5969aa9347e
+  - e2db212d64ad
+  - b242deb58952
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_populations
@@ -104,11 +104,11 @@ tools:
 - name: stacks2_procrad
   owner: iuc
   revisions:
-  - 8cff84759bf6
-  - 9a171f9a450b
   - bd5ff77e2036
-  - b4bab607eb05
+  - 8cff84759bf6
   - e897c74a48bb
+  - b4bab607eb05
+  - 9a171f9a450b
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_procrad
@@ -121,11 +121,11 @@ tools:
   owner: iuc
   revisions:
   - adc7a7610d4f
-  - 4f65e343ecdf
-  - 887e0991eb24
-  - 33f0793edf93
   - 6dafad990086
   - 5e10f396979e
+  - 887e0991eb24
+  - 4f65e343ecdf
+  - 33f0793edf93
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_refmap
@@ -137,12 +137,12 @@ tools:
 - name: stacks2_shortreads
   owner: iuc
   revisions:
-  - 43e3eeb2e0ec
   - 17d39bf0a63a
+  - 97575d01f06b
+  - 43e3eeb2e0ec
   - 4e280b27a831
-  - c287418eb288
   - c5d7050e4ad7
-  - 97575d01f06b
+  - c287418eb288
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_shortreads
@@ -154,11 +154,11 @@ tools:
 - name: stacks2_sstacks
   owner: iuc
   revisions:
+  - d9bf483266a1
   - 09b8edb56d80
+  - 9586f08634c0
   - 0b8c84a7fdb5
-  - d9bf483266a1
   - a819ec3b362d
-  - 9586f08634c0
   - cd034465d4a4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -172,11 +172,11 @@ tools:
   owner: iuc
   revisions:
   - 69842dd5aa48
-  - 2645575d1bf2
   - 95351dd0fd3f
   - a4b4bd84f69e
-  - a9c34a289493
+  - 2645575d1bf2
   - bf0e43ab0416
+  - a9c34a289493
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_tsv2bam
@@ -188,11 +188,11 @@ tools:
 - name: stacks2_ustacks
   owner: iuc
   revisions:
-  - 912f904a6e1e
-  - d033e1ccb386
+  - d1fda11e602f
   - cfb504394ae1
   - bb0475c884ff
-  - d1fda11e602f
+  - d033e1ccb386
+  - 912f904a6e1e
   - 8a35a3bc6752
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -235,9 +235,9 @@ tools:
 - name: stacks_populations
   owner: iuc
   revisions:
-  - d504d945a655
   - d1fad35bdb4a
   - 95286af4139b
+  - d504d945a655
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_procrad
@@ -267,8 +267,8 @@ tools:
 - name: stacks_sstacks
   owner: iuc
   revisions:
-  - 96de7538bf0c
   - 563af4497055
+  - 96de7538bf0c
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_stats
diff --git a/staging.gvl.org.au/rna_seq.yml b/staging.gvl.org.au/rna_seq.yml
index 723394329..042c8276e 100644
--- a/staging.gvl.org.au/rna_seq.yml
+++ b/staging.gvl.org.au/rna_seq.yml
@@ -2,9 +2,9 @@ tools:
 - name: arriba_draw_fusions
   owner: iuc
   revisions:
-  - 31f8063eedea
   - 2d4e3aff9dc7
   - cf01dd6c6b1f
+  - 31f8063eedea
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba_get_filters
@@ -18,8 +18,8 @@ tools:
 - name: arriba
   owner: iuc
   revisions:
-  - 3d61a698e5e1
   - 01ccd366690d
+  - 3d61a698e5e1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blockbuster
@@ -31,8 +31,8 @@ tools:
 - name: blockclust
   owner: rnateam
   revisions:
-  - dbb6ee3179bc
   - aab6cf87b40a
+  - dbb6ee3179bc
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blockclust
@@ -56,15 +56,15 @@ tools:
 - name: cuffcompare
   owner: devteam
   revisions:
-  - f648e5180e40
   - e66b9b5b8580
+  - f648e5180e40
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cufflinks
   owner: devteam
   revisions:
-  - d080005cffe1
   - e04dbae2abe0
+  - d080005cffe1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffmerge
@@ -109,10 +109,10 @@ tools:
 - name: describe_samples
   owner: iuc
   revisions:
+  - 8f0181aacb7a
+  - 0693ccd171c4
   - e3b16fd7dd08
   - 3b36efd62b3e
-  - 0693ccd171c4
-  - 8f0181aacb7a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: describe_samples
@@ -125,10 +125,10 @@ tools:
   owner: iuc
   revisions:
   - 9a882d108833
-  - cd9874cb9019
   - 8fe98f7094de
   - 6a3a025714d3
   - d027d1f4984e
+  - cd9874cb9019
   - 24a09ca67621
   - 0696db066a5b
   tool_panel_section_label: RNA-seq
@@ -143,9 +143,9 @@ tools:
   owner: iuc
   revisions:
   - b47c006d90c5
-  - df929f257179
   - 62adf13b86ea
   - 2872c633f07e
+  - df929f257179
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dexseq
@@ -157,17 +157,17 @@ tools:
 - name: edger
   owner: iuc
   revisions:
-  - 555659de7321
-  - 3d89af8a44f0
-  - 5bf899c13979
-  - f2843df56434
-  - 334ce9b1bac5
-  - 9bdff28ae1b1
-  - 6e53e565fc6a
-  - 070900306913
   - df0c8d0a5992
   - a8305cf0c951
+  - 9bdff28ae1b1
+  - 070900306913
+  - 334ce9b1bac5
   - 0cb907a2a810
+  - f2843df56434
+  - 5bf899c13979
+  - 3d89af8a44f0
+  - 555659de7321
+  - 6e53e565fc6a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: edger
@@ -179,8 +179,8 @@ tools:
 - name: egsea
   owner: iuc
   revisions:
-  - fba1660fb717
   - 31ea4992b948
+  - fba1660fb717
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: egsea
@@ -198,17 +198,17 @@ tools:
 - name: featurecounts
   owner: iuc
   revisions:
-  - af814359d244
+  - 90d16db017d7
   - 6f66ae7c5f7a
-  - e6a2a912677a
-  - 7db9d3ea71c9
+  - f3a5f075498f
   - ea04b737afa0
-  - 90d16db017d7
-  - a56fbe2d6ba7
+  - 7db9d3ea71c9
+  - e6a2a912677a
   - f9d49f5cb597
-  - 38b6d12edc68
   - a37612abf7f9
-  - f3a5f075498f
+  - a56fbe2d6ba7
+  - af814359d244
+  - 38b6d12edc68
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: featurecounts
@@ -232,9 +232,9 @@ tools:
 - name: gffcompare
   owner: iuc
   revisions:
-  - 3c97c841a443
-  - f99dd58de04f
   - 0f710191a66d
+  - f99dd58de04f
+  - 3c97c841a443
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gffcompare
@@ -252,13 +252,13 @@ tools:
 - name: hisat2
   owner: iuc
   revisions:
-  - 26371a1df031
   - d4b55e2beb12
+  - 26371a1df031
   - 6c19daec423d
-  - a86e80d3c09c
   - f4af63aaf57a
   - 6ab42baa56e9
   - 3fb01a8c902d
+  - a86e80d3c09c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hisat2
@@ -276,8 +276,8 @@ tools:
 - name: htseq_count
   owner: lparsons
   revisions:
-  - 916cb26bd9d3
   - 67b0b160903a
+  - 916cb26bd9d3
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: htseq_count
@@ -295,8 +295,8 @@ tools:
 - name: kallisto_pseudo
   owner: iuc
   revisions:
-  - 87c11c05d238
   - ce5d418183c5
+  - 87c11c05d238
   - 5ae5c312d718
   - 01247aaf0a10
   - 1c75aa5de15e
@@ -311,8 +311,8 @@ tools:
 - name: kallisto_quant
   owner: iuc
   revisions:
-  - 4f9c4e6566e5
   - 40985510cd98
+  - 4f9c4e6566e5
   - c971db6f0fe5
   - 10c98fab6c5a
   tool_panel_section_label: RNA-seq
@@ -326,13 +326,13 @@ tools:
 - name: limma_voom
   owner: iuc
   revisions:
-  - 708348a17fa1
-  - 0921444c832d
-  - e827f9aae031
   - 58c35179ebf0
-  - d6f5fa4ee473
   - 97e06a4c7c75
   - 32511f586472
+  - e827f9aae031
+  - 0921444c832d
+  - d6f5fa4ee473
+  - 708348a17fa1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: limma_voom
@@ -393,19 +393,19 @@ tools:
 - name: rgrnastar
   owner: iuc
   revisions:
-  - 0a563fd2f22e
-  - 7ed2edc1337f
   - e132e7d02a3e
   - 4df95e2d7f61
-  - 5ec75f5dae3c
-  - 79de45b5069b
-  - 980d2a2e1180
   - 3ea5a2a63fa2
-  - b9e04854e2bb
-  - 99b17b74a8cd
-  - c7c55b694974
+  - 7ed2edc1337f
+  - 980d2a2e1180
   - c772497b2c32
+  - 5ec75f5dae3c
+  - c7c55b694974
+  - b9e04854e2bb
   - 4074fc1940e2
+  - 99b17b74a8cd
+  - 0a563fd2f22e
+  - 79de45b5069b
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rgrnastar
@@ -429,13 +429,13 @@ tools:
 - name: salmon
   owner: bgruening
   revisions:
-  - e3d32471da11
-  - ebab418107f5
-  - cc05793bb896
+  - 15cd64d7c58b
   - 49121db48873
   - 53e9709776a0
-  - 15cd64d7c58b
+  - cc05793bb896
   - 2c0ca397d302
+  - ebab418107f5
+  - e3d32471da11
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salmon
@@ -447,22 +447,22 @@ tools:
 - name: seurat
   owner: iuc
   revisions:
-  - c0fd285eb553
   - 8c28affc7c48
   - fab6ff46e019
   - 56242ff81c84
+  - c0fd285eb553
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
   owner: iuc
   revisions:
+  - 76d290331481
   - dd4df992d93d
   - ae618321f34a
   - 1ebd14235b92
-  - 258d696dbd7e
-  - cef79931dda5
-  - 76d290331481
   - 914cfcba0ec8
+  - cef79931dda5
+  - 258d696dbd7e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
@@ -492,10 +492,10 @@ tools:
 - name: transdecoder
   owner: iuc
   revisions:
+  - 0db979fead3a
   - d0d4cef4f967
   - c6334cb383ff
   - ffd1300599a1
-  - 0db979fead3a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transdecoder
@@ -507,10 +507,10 @@ tools:
 - name: trinity_abundance_estimates_to_matrix
   owner: iuc
   revisions:
-  - bcc5f03f1900
-  - 74217fbfba4d
-  - ba3720d7e68b
   - d6a479fd4281
+  - ba3720d7e68b
+  - 74217fbfba4d
+  - bcc5f03f1900
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_abundance_estimates_to_matrix
@@ -522,10 +522,10 @@ tools:
 - name: trinity_align_and_estimate_abundance
   owner: iuc
   revisions:
-  - 2fb4ee002432
-  - 56162e446004
   - c2b82a94493e
   - 478f36effca1
+  - 56162e446004
+  - 2fb4ee002432
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_align_and_estimate_abundance
@@ -551,10 +551,10 @@ tools:
 - name: trinity_contig_exn50_statistic
   owner: iuc
   revisions:
-  - 34a018cbee9c
   - 870ac06dff8e
-  - 4687ecf0eb2d
+  - 34a018cbee9c
   - be3f26533209
+  - 4687ecf0eb2d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_contig_exn50_statistic
@@ -566,11 +566,11 @@ tools:
 - name: trinity_define_clusters_by_cutting_tree
   owner: iuc
   revisions:
-  - 05ab8d5e04a2
-  - 65e7dea767ea
+  - 5192f657f305
   - c5fbddcac63a
+  - 65e7dea767ea
   - 33406f5a445c
-  - 5192f657f305
+  - 05ab8d5e04a2
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_define_clusters_by_cutting_tree
@@ -583,9 +583,9 @@ tools:
   owner: iuc
   revisions:
   - 6f0fb35b799c
+  - 1fdb25a8384d
   - e406ac71165d
   - a35cba31d904
-  - 1fdb25a8384d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_filter_low_expr_transcripts
@@ -597,10 +597,10 @@ tools:
 - name: trinity_gene_to_trans_map
   owner: iuc
   revisions:
+  - 37a1129c89d2
   - 7c7fbf13aadd
   - 964b7efe2639
   - c2c039e421af
-  - 37a1129c89d2
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_gene_to_trans_map
@@ -612,10 +612,10 @@ tools:
 - name: trinity_run_de_analysis
   owner: iuc
   revisions:
-  - 24e94d84adc9
   - eafea3083352
-  - 1d689e4e1caf
   - 047c22569787
+  - 1d689e4e1caf
+  - 24e94d84adc9
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_run_de_analysis
@@ -627,8 +627,8 @@ tools:
 - name: trinity_samples_qccheck
   owner: iuc
   revisions:
-  - 1812dbc5bb7b
   - 04bb8bb7c198
+  - 1812dbc5bb7b
   - 3a4ac03d1266
   - 9871104ea630
   tool_panel_section_label: RNA-seq
@@ -642,15 +642,15 @@ tools:
 - name: trinity
   owner: iuc
   revisions:
-  - 32b86cd8eb50
   - 8f1c3df4dd49
-  - cee61b3fcf78
-  - 9fa24d5aac68
   - c9cfec002f71
   - d2bc35f3d1c5
-  - db1f362cca3e
   - d84caa5a98ad
   - 48636f857c4b
+  - 32b86cd8eb50
+  - cee61b3fcf78
+  - 9fa24d5aac68
+  - db1f362cca3e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity
@@ -662,10 +662,10 @@ tools:
 - name: trinotate
   owner: iuc
   revisions:
+  - 6fd16fad465d
   - 2b093007fab9
-  - 9e61bc67866f
   - 4383070d29ed
-  - 6fd16fad465d
+  - 9e61bc67866f
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinotate
diff --git a/staging.gvl.org.au/rseqc.yml b/staging.gvl.org.au/rseqc.yml
index ad071beec..b41c54fe8 100644
--- a/staging.gvl.org.au/rseqc.yml
+++ b/staging.gvl.org.au/rseqc.yml
@@ -2,8 +2,8 @@ tools:
 - name: rseqc
   owner: nilesh
   revisions:
-  - 473382134e56
   - 080fd5739bb4
   - 1a052c827e88
+  - 473382134e56
   tool_panel_section_label: RSeQC
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/sambam.yml b/staging.gvl.org.au/sambam.yml
index 372d16ae3..cf54cfd13 100644
--- a/staging.gvl.org.au/sambam.yml
+++ b/staging.gvl.org.au/sambam.yml
@@ -2,9 +2,9 @@ tools:
 - name: bam_to_sam
   owner: devteam
   revisions:
-  - 88eedb4abea0
-  - a53efedba9e7
   - 10184eaa85fc
+  - a53efedba9e7
+  - 88eedb4abea0
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bam_to_sam
@@ -16,9 +16,9 @@ tools:
 - name: bamtools_filter
   owner: devteam
   revisions:
-  - cb20f99fd45b
-  - 108db6635177
   - 1dfd95ee241e
+  - 108db6635177
+  - cb20f99fd45b
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_filter
@@ -36,8 +36,8 @@ tools:
 - name: pileup_interval
   owner: devteam
   revisions:
-  - 9c1c0b947e46
   - ef11139d4545
+  - 9c1c0b947e46
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pileup_interval
@@ -55,8 +55,8 @@ tools:
 - name: qualimap_bamqc
   owner: iuc
   revisions:
-  - 19ece8afbaab
   - e7fd6754d093
+  - 19ece8afbaab
   - 5f8e69cc4c6e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -89,8 +89,8 @@ tools:
 - name: sam_to_bam
   owner: devteam
   revisions:
-  - cf1ffd88f895
   - 9bd1568619cd
+  - cf1ffd88f895
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam_to_bam
@@ -109,17 +109,17 @@ tools:
   owner: devteam
   revisions:
   - 56c31114ad4a
-  - dc6ff68ea5e8
   - 649a225999a5
+  - dc6ff68ea5e8
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bedcov
   owner: devteam
   revisions:
+  - 46c6639921f1
   - 9149ad20699a
   - 6856f8a01905
   - 12749212f61b
-  - 46c6639921f1
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bedcov
@@ -131,10 +131,10 @@ tools:
 - name: samtools_calmd
   owner: devteam
   revisions:
-  - c89806670ab9
   - 06dc50b7b711
-  - 92ec40abcdcf
   - 33208952b99d
+  - c89806670ab9
+  - 92ec40abcdcf
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_calmd
@@ -146,10 +146,10 @@ tools:
 - name: samtools_fastx
   owner: iuc
   revisions:
-  - b3d99709fe1a
   - 66e23b11feae
   - a8d69aee190e
   - 720217c23995
+  - b3d99709fe1a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_fastx
@@ -162,10 +162,10 @@ tools:
   owner: devteam
   revisions:
   - 22970df7a40e
-  - fefd89ab563c
+  - db17d5321bad
   - fe34990e5ce7
   - cc61ade70eb8
-  - db17d5321bad
+  - fefd89ab563c
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_flagstat
@@ -177,11 +177,11 @@ tools:
 - name: samtools_idxstats
   owner: devteam
   revisions:
+  - 811fc2d75ad4
+  - 7def34e6cf4d
   - 88b8c2916784
   - 7a6034296ae9
   - fa5d3e61e429
-  - 811fc2d75ad4
-  - 7def34e6cf4d
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_idxstats
@@ -193,20 +193,20 @@ tools:
 - name: samtools_merge
   owner: iuc
   revisions:
-  - b40e2d865d52
   - 36677f429310
   - 65a38e8c8e2a
+  - b40e2d865d52
   - 740ce0a18f0d
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
   owner: devteam
   revisions:
-  - 329deb17a9f7
   - b61f5d6a7f25
-  - 583abf29fc8e
   - fa7ad9b89f4a
+  - 583abf29fc8e
   - 9da0311ab1dd
+  - 329deb17a9f7
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
@@ -218,8 +218,8 @@ tools:
 - name: samtools_phase
   owner: devteam
   revisions:
-  - b5c3b1856370
   - 1e5880498f52
+  - b5c3b1856370
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_phase
@@ -232,9 +232,9 @@ tools:
   owner: devteam
   revisions:
   - db000c6007a0
-  - 30388d878f81
   - d7b4851d1971
   - bb8cfc6f6e0c
+  - 30388d878f81
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_reheader
@@ -252,9 +252,9 @@ tools:
 - name: samtools_slice_bam
   owner: devteam
   revisions:
+  - 344fc91e1bfd
   - b5c88b7b153e
   - a4a10c7924d1
-  - 344fc91e1bfd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_slice_bam
@@ -266,10 +266,10 @@ tools:
 - name: samtools_sort
   owner: devteam
   revisions:
-  - 6c2c1836728b
   - cab3f8d35989
-  - a577ea614bed
   - e613c1ad4c4c
+  - a577ea614bed
+  - 6c2c1836728b
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_sort
@@ -281,10 +281,10 @@ tools:
 - name: samtools_split
   owner: devteam
   revisions:
-  - b7f7826ef1cd
-  - 135c85f4cfaf
   - 5d9ae78f34d3
   - bcedabb53ddf
+  - b7f7826ef1cd
+  - 135c85f4cfaf
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_split
@@ -298,10 +298,10 @@ tools:
   revisions:
   - 1cc79f49b8d5
   - 3a0efe14891f
-  - 145f6d74ff5e
   - 5a08c09b9311
-  - 24c5d43cb545
   - fed4aa48ba09
+  - 24c5d43cb545
+  - 145f6d74ff5e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_stats
@@ -313,14 +313,14 @@ tools:
 - name: samtools_view
   owner: iuc
   revisions:
-  - 5826298f6a73
-  - 350bbc5c2ffd
-  - c370440f901e
-  - 6be888be75f9
+  - bf328cec6a42
   - b01db2684fa5
+  - 5826298f6a73
   - b72793637686
   - 0dbf49c414ae
-  - bf328cec6a42
+  - c370440f901e
+  - 6be888be75f9
+  - 350bbc5c2ffd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_view
diff --git a/staging.gvl.org.au/send_data.yml b/staging.gvl.org.au/send_data.yml
index 375444f7b..0cdf2f346 100644
--- a/staging.gvl.org.au/send_data.yml
+++ b/staging.gvl.org.au/send_data.yml
@@ -2,11 +2,11 @@ tools:
 - name: ena_upload
   owner: iuc
   revisions:
+  - a62c4a11a67d
   - 59bb6d34fca6
-  - 4aab5ae907b6
   - 480d9e9d156b
-  - 6f6537780379
-  - a62c4a11a67d
+  - 4aab5ae907b6
   - d147d6455873
+  - 6f6537780379
   tool_panel_section_label: Send Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/single_cell.yml b/staging.gvl.org.au/single_cell.yml
index fb5eeafcd..ff056f6f9 100644
--- a/staging.gvl.org.au/single_cell.yml
+++ b/staging.gvl.org.au/single_cell.yml
@@ -2,12 +2,12 @@ tools:
 - name: anndata_import
   owner: iuc
   revisions:
-  - 55e35e9203cf
-  - 00712416fdaa
   - fb9e030ffae4
+  - cfc3f5a57dc6
+  - 00712416fdaa
   - 93dd15e13e6a
   - 32e547223c9e
-  - cfc3f5a57dc6
+  - 55e35e9203cf
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_import
@@ -19,11 +19,11 @@ tools:
 - name: anndata_inspect
   owner: iuc
   revisions:
-  - 39e945f0b2c1
   - ee98d611afc6
   - 688357ad5e61
   - b9fac48532eb
   - 038e32885fec
+  - 39e945f0b2c1
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_inspect
@@ -35,12 +35,12 @@ tools:
 - name: anndata_manipulate
   owner: iuc
   revisions:
+  - 43cb7b5a6fe7
+  - ed4996a16f7f
   - b85871dd69f9
-  - 3d748954434b
   - 9bd945a03d7b
-  - 43cb7b5a6fe7
   - d4af736e7b83
-  - ed4996a16f7f
+  - 3d748954434b
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_manipulate
@@ -53,9 +53,9 @@ tools:
   owner: iuc
   revisions:
   - 8855361fcfc5
+  - a9caad671439
   - cdf4443d5625
   - 2c1200fba922
-  - a9caad671439
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dropletutils
@@ -73,15 +73,15 @@ tools:
 - name: music_construct_eset
   owner: bgruening
   revisions:
-  - 282819d09a4f
   - 7ffaa0968da3
+  - 282819d09a4f
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_deconvolution
   owner: bgruening
   revisions:
-  - 2ba99a52bd44
   - 56371b5a2da9
+  - 2ba99a52bd44
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_inspect_eset
@@ -120,9 +120,9 @@ tools:
 - name: raceid_inspectclusters
   owner: iuc
   revisions:
-  - 37a47c4fd84d
   - 2b0d3e2f402a
   - f3eb2291da05
+  - 37a47c4fd84d
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspectclusters
@@ -134,9 +134,9 @@ tools:
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
-  - a6821f856a1e
   - 69018f285aa3
   - df8e4e54d367
+  - a6821f856a1e
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspecttrajectory
@@ -148,8 +148,8 @@ tools:
 - name: raceid_trajectory
   owner: iuc
   revisions:
-  - 44b935f2271b
   - 2af7c5086a96
+  - 44b935f2271b
   - c92d0f9338c5
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -163,9 +163,9 @@ tools:
   owner: iuc
   revisions:
   - b2df381a6004
-  - 6acb08931836
   - 77b91b9bdf52
   - aaa5da8e73a9
+  - 6acb08931836
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_cluster_reduce_dimension
@@ -179,8 +179,8 @@ tools:
   revisions:
   - b409c2486353
   - a97abb8cd15b
-  - 3c86f71498bc
   - a03ff8633507
+  - 3c86f71498bc
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter
@@ -192,11 +192,11 @@ tools:
 - name: scanpy_inspect
   owner: iuc
   revisions:
-  - 5e9171dc8244
   - c5d3684f7c4c
-  - 3081ff5c84a3
-  - cc0deb593fc8
   - 6c145a6868cc
+  - cc0deb593fc8
+  - 5e9171dc8244
+  - 3081ff5c84a3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_inspect
@@ -208,10 +208,10 @@ tools:
 - name: scanpy_normalize
   owner: iuc
   revisions:
+  - 3bcd5445cd7a
   - 94c19fb1281c
-  - ab55fe8030b6
   - a407e7f8bdc1
-  - 3bcd5445cd7a
+  - ab55fe8030b6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_normalize
@@ -223,10 +223,10 @@ tools:
 - name: scanpy_plot
   owner: iuc
   revisions:
-  - aa0c474463c2
-  - 6adf98e782f3
-  - 9b0cdb8cf6be
   - dbbe1ea8ecb1
+  - 9b0cdb8cf6be
+  - 6adf98e782f3
+  - aa0c474463c2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot
@@ -238,11 +238,11 @@ tools:
 - name: scanpy_remove_confounders
   owner: iuc
   revisions:
+  - 73ab2ac53d06
   - 458e8f43a775
   - f2f6c703da06
-  - 215733a383f2
   - bf2017df9837
-  - 73ab2ac53d06
+  - 215733a383f2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_remove_confounders
@@ -254,9 +254,9 @@ tools:
 - name: scater_create_qcmetric_ready_sce
   owner: iuc
   revisions:
+  - b834074a9aff
   - 8f333f90d8d6
   - fd808de478b1
-  - b834074a9aff
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_create_qcmetric_ready_sce
@@ -268,9 +268,9 @@ tools:
 - name: scater_filter
   owner: iuc
   revisions:
-  - 7a365ec81b52
-  - 652923ce664f
   - b7ea9f09c02f
+  - 652923ce664f
+  - 7a365ec81b52
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_filter
@@ -296,9 +296,9 @@ tools:
 - name: scater_plot_pca
   owner: iuc
   revisions:
-  - 9e5c0bb18d08
-  - c99ba278dfa9
   - 46fc6751d746
+  - c99ba278dfa9
+  - 9e5c0bb18d08
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_pca
diff --git a/staging.gvl.org.au/statistics.yml b/staging.gvl.org.au/statistics.yml
index af2e42744..2ba08f829 100644
--- a/staging.gvl.org.au/statistics.yml
+++ b/staging.gvl.org.au/statistics.yml
@@ -32,11 +32,11 @@ tools:
 - name: datamash_ops
   owner: iuc
   revisions:
-  - 562f3c677828
   - 746e8e4bf929
-  - 2f3c6f2dcf39
-  - 4c07ddedc198
   - 419027d822d6
+  - 562f3c677828
+  - 4c07ddedc198
+  - 2f3c6f2dcf39
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_ava_perclass
@@ -49,8 +49,8 @@ tools:
 - name: dwt_cor_avb_all
   owner: devteam
   revisions:
-  - e01e8a9a82f4
   - 8564f6927b87
+  - e01e8a9a82f4
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_ivc_all
@@ -63,15 +63,15 @@ tools:
 - name: dwt_var_perclass
   owner: devteam
   revisions:
-  - 781e68074f84
   - cb422b6f49d2
+  - 781e68074f84
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_var_perfeature
   owner: devteam
   revisions:
-  - 6c29c7e347e8
   - cb1c59d69557
+  - 6c29c7e347e8
   - 7a15159140d1
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -120,29 +120,29 @@ tools:
 - name: sklearn_build_pipeline
   owner: bgruening
   revisions:
-  - 9c3e1d3235c8
-  - b1eda492f063
-  - 7442b94d6a1e
-  - 840f29aad145
   - 4c4ec859c31a
+  - 840f29aad145
+  - b1eda492f063
   - aef56d0e7a61
+  - 7442b94d6a1e
+  - 9c3e1d3235c8
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_estimator_attributes
   owner: bgruening
   revisions:
+  - 30d21a6041f6
   - d0352e8b4c10
   - 07843f917990
-  - 30d21a6041f6
-  - 375bbd555f4a
   - 9fda0b82f419
+  - 375bbd555f4a
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_nn_classifier
   owner: bgruening
   revisions:
-  - 8b1b2b91f8d0
   - 7ae443e6217d
+  - 8b1b2b91f8d0
   - 4cc980df6265
   - 2c58b83c9bad
   - cd02bf168d23
@@ -151,12 +151,12 @@ tools:
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
-  - e10e776f2109
   - 7dd3fb35904f
-  - bb9fc9d46ea4
+  - 1dd433d2c92c
+  - e10e776f2109
   - ad7e0b4291ee
+  - bb9fc9d46ea4
   - 4bbaf77573ef
-  - 1dd433d2c92c
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: t_test_two_samples
diff --git a/staging.gvl.org.au/text_manipulation.yml b/staging.gvl.org.au/text_manipulation.yml
index 1e976a46e..9ee7ecb40 100644
--- a/staging.gvl.org.au/text_manipulation.yml
+++ b/staging.gvl.org.au/text_manipulation.yml
@@ -8,8 +8,8 @@ tools:
 - name: add_value
   owner: devteam
   revisions:
-  - 745871c0b055
   - 023f0a3760b3
+  - 745871c0b055
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_element_identifiers
@@ -21,21 +21,21 @@ tools:
 - name: column_arrange_by_header
   owner: bgruening
   revisions:
-  - f18f67056946
   - 6c6d26ff01ff
+  - f18f67056946
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_maker
   owner: devteam
   revisions:
-  - 6595517c2dd8
-  - 6e8d94597139
   - be25c075ed54
+  - 6595517c2dd8
   - 626658afe4cb
   - 9cd341095afd
-  - 02026300aa45
+  - 6e8d94597139
   - 13b6f0007d9e
   - 464b9305180e
+  - 02026300aa45
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_remove_by_header
@@ -72,8 +72,8 @@ tools:
 - name: filter_tabular
   owner: iuc
   revisions:
-  - 9cc411a62277
   - 557ec8d7087d
+  - 9cc411a62277
   - 37cde8134c6a
   - 34d29339abab
   tool_panel_section_label: Text Manipulation
@@ -99,8 +99,8 @@ tools:
 - name: merge_cols
   owner: devteam
   revisions:
-  - ae7843d06f8f
   - f2aac0c5c60d
+  - ae7843d06f8f
   - dd40b1e9eebe
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -108,11 +108,11 @@ tools:
   owner: iuc
   revisions:
   - 33d61c89fb8d
-  - 3a6b78c39dca
   - 83069b38aa85
-  - 623f3eb7aa48
-  - 2e8f945f7285
   - cf34c344508d
+  - 2e8f945f7285
+  - 623f3eb7aa48
+  - 3a6b78c39dca
   - 1ea4e668bf73
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -120,8 +120,8 @@ tools:
   owner: galaxyp
   revisions:
   - 503bcd6ebe4b
-  - 399da6b5ec21
   - ae8c4b2488e7
+  - 399da6b5ec21
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: replace_column_by_key_value_file
@@ -133,27 +133,27 @@ tools:
 - name: sqlite_to_tabular
   owner: iuc
   revisions:
-  - b722161a845a
   - f768f6183386
   - bce29ec10b78
+  - b722161a845a
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: table_compute
   owner: iuc
   revisions:
-  - 3bf5661c0280
   - 60ff16842fcd
+  - 3bf5661c0280
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: text_processing
   owner: bgruening
   revisions:
-  - 9ff72e942410
   - d698c222f354
   - ddf54b12c295
   - a6f147a050a2
-  - f46f0e4f75c4
+  - 9ff72e942410
   - 0a8c6b61f0f4
   - 74a8bef53a00
+  - f46f0e4f75c4
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/variant_calling.yml b/staging.gvl.org.au/variant_calling.yml
index dc520dc7d..9a374408d 100644
--- a/staging.gvl.org.au/variant_calling.yml
+++ b/staging.gvl.org.au/variant_calling.yml
@@ -2,8 +2,8 @@ tools:
 - name: breseq
   owner: iuc
   revisions:
-  - 85c57cc9b558
   - 82fb5e3bb93e
+  - 85c57cc9b558
   - 0d18a3ba2d1c
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -16,57 +16,57 @@ tools:
 - name: freebayes
   owner: devteam
   revisions:
+  - 156b60c1530f
   - 57def2d7c093
   - a5937157062f
   - 04fa42777df9
-  - 156b60c1530f
   - ef2c525bd8cd
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_alnqual
   owner: iuc
   revisions:
-  - 09d6e4693887
+  - 791f73caa0c8
   - 435b157bed6d
   - e61c9ac190ad
-  - 791f73caa0c8
+  - 09d6e4693887
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_call
   owner: iuc
   revisions:
+  - 3b4b2121842f
+  - 4805fe3d8fda
   - e1461b5c52a0
   - 65432c3abf6c
-  - 4805fe3d8fda
+  - 074d44697036
   - dfadc322b065
   - 03627f24605f
-  - 3b4b2121842f
-  - 074d44697036
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_filter
   owner: iuc
   revisions:
+  - 701d134358ad
   - 9cb929f21cfa
   - 7dfca164d2e3
-  - 701d134358ad
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_indelqual
   owner: iuc
   revisions:
+  - 971e07ca4456
   - f4473557ffc7
   - 426d707dfc47
   - c27549b9aa1f
-  - 971e07ca4456
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_viterbi
   owner: iuc
   revisions:
   - dbd9f2db9ed8
-  - cdaab621d454
   - aa35ee7f3ab2
+  - cdaab621d454
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: naive_variant_caller
@@ -84,10 +84,10 @@ tools:
 - name: snippy
   owner: iuc
   revisions:
-  - c9a8ef2aa380
   - d220115f882b
-  - fa016f1eea1a
   - 5bbf9eada9c2
+  - c9a8ef2aa380
+  - fa016f1eea1a
   - 9bccc8404a3c
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -133,16 +133,16 @@ tools:
   - ee4a90760848
   - 40f0591deda0
   - 32f14a2723ec
-  - 3b1e7c170b10
   - e7aff4a85df5
+  - 3b1e7c170b10
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbvcfreport
   owner: iuc
   revisions:
   - 02d81b994ef5
-  - adc0645b945c
   - 4934c0ac6197
+  - adc0645b945c
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: varscan_somatic
diff --git a/staging.gvl.org.au/vcfbcf.yml b/staging.gvl.org.au/vcfbcf.yml
index cf136816d..ac570c519 100644
--- a/staging.gvl.org.au/vcfbcf.yml
+++ b/staging.gvl.org.au/vcfbcf.yml
@@ -2,13 +2,13 @@ tools:
 - name: bcftools_annotate
   owner: iuc
   revisions:
+  - b7ea370b8f5d
+  - 6a88248893c4
   - e075b1be5abb
-  - 3f62d4939d54
   - ebe5fc018e72
-  - 265fe0f9ea64
   - 8a2e296c07ef
-  - b7ea370b8f5d
-  - 6a88248893c4
+  - 265fe0f9ea64
+  - 3f62d4939d54
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_annotate
@@ -20,13 +20,13 @@ tools:
 - name: bcftools_call
   owner: iuc
   revisions:
-  - 0fba2c15b40d
-  - 21687e35f066
-  - 544cb432072b
-  - c37b684e7f4e
   - 22637b1a55bf
+  - 544cb432072b
+  - 0fba2c15b40d
   - f0d44631365f
   - b03984136ce4
+  - c37b684e7f4e
+  - 21687e35f066
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_call
@@ -38,14 +38,14 @@ tools:
 - name: bcftools_cnv
   owner: iuc
   revisions:
-  - 8408bffd5616
-  - 0238f68ad641
   - bf1f4994f104
-  - 8627b2b383b4
-  - 01d6b7d6365e
-  - 3a7084316a6e
   - 6d35a3780bfd
+  - 8408bffd5616
+  - 01d6b7d6365e
+  - 8627b2b383b4
   - 8ca3647c90fd
+  - 3a7084316a6e
+  - 0238f68ad641
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_cnv
@@ -58,13 +58,13 @@ tools:
   owner: iuc
   revisions:
   - 62ca6da715bf
-  - 03e0645395d2
-  - 6b6c992d3a14
-  - 08296952d12f
   - d144af39073a
-  - 9b5abbf50d23
-  - f430a1ec7ee4
   - 81426b3cf18b
+  - f430a1ec7ee4
+  - 6b6c992d3a14
+  - 03e0645395d2
+  - 9b5abbf50d23
+  - 08296952d12f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_concat
@@ -76,13 +76,13 @@ tools:
 - name: bcftools_consensus
   owner: iuc
   revisions:
+  - e522022137f6
+  - 95c6f3f4c77f
   - 147de996e34f
-  - 1829900b5dcd
-  - 2363ef414c9b
   - d3081540d175
-  - e522022137f6
   - d37e313a41be
-  - 95c6f3f4c77f
+  - 2363ef414c9b
+  - 1829900b5dcd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_consensus
@@ -95,12 +95,12 @@ tools:
   owner: iuc
   revisions:
   - 1137ce8efc1e
+  - 348cd212dbad
+  - cacc9970727a
+  - b14ff40958cb
   - 09f37afb3621
   - 92c0aff8b53e
-  - 348cd212dbad
   - 9b29129fb491
-  - b14ff40958cb
-  - cacc9970727a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_from_vcf
@@ -112,12 +112,12 @@ tools:
 - name: bcftools_convert_to_vcf
   owner: iuc
   revisions:
-  - 367ba501b6eb
-  - 55c0e906c14c
-  - 1f2183a23823
   - ecc9192912b8
   - de68c11034f6
+  - 1f2183a23823
   - 4935320a59a8
+  - 55c0e906c14c
+  - 367ba501b6eb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_to_vcf
@@ -129,12 +129,12 @@ tools:
 - name: bcftools_csq
   owner: iuc
   revisions:
-  - f01b2c9506b9
-  - 7cbf3c66d4ad
+  - 64a8f7dae3ad
   - ae68ceb4cca3
-  - 039ea3f1dea9
+  - 7cbf3c66d4ad
+  - f01b2c9506b9
   - 6c790a091c7c
-  - 64a8f7dae3ad
+  - 039ea3f1dea9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_csq
@@ -146,13 +146,13 @@ tools:
 - name: bcftools_filter
   owner: iuc
   revisions:
-  - e7452697afd9
   - 277719af4dd7
+  - e7452697afd9
+  - 656a916779fe
   - 6ea7170a016d
+  - 963a3635b2e1
   - cdb7b4927742
   - 33bd9301568c
-  - 963a3635b2e1
-  - 656a916779fe
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_filter
@@ -164,13 +164,13 @@ tools:
 - name: bcftools_gtcheck
   owner: iuc
   revisions:
+  - 26d97cdd5410
   - 3eac729e66c9
-  - 5a321fab1fe4
+  - a29a2f40b665
+  - a1213a0b7b66
   - 501bfb078342
+  - 5a321fab1fe4
   - b7f0f59baa7e
-  - a1213a0b7b66
-  - 26d97cdd5410
-  - a29a2f40b665
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_gtcheck
@@ -182,14 +182,14 @@ tools:
 - name: bcftools_isec
   owner: iuc
   revisions:
-  - 63aabc920911
-  - 768d04526638
-  - c803c34361e0
-  - 97d19c008d15
-  - 81e4014fa809
   - d7d1663559e9
+  - 768d04526638
   - 709dd8291b83
+  - 81e4014fa809
+  - 97d19c008d15
   - 5f27e814a119
+  - c803c34361e0
+  - 63aabc920911
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_isec
@@ -201,12 +201,12 @@ tools:
 - name: bcftools_merge
   owner: iuc
   revisions:
-  - af163c712539
-  - b1eba148b35b
-  - 85ee7e6c4204
   - b931e65638b8
-  - 86296490704e
+  - 85ee7e6c4204
+  - af163c712539
   - 7ba36babba2d
+  - 86296490704e
+  - b1eba148b35b
   - 2215287d5cc9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -219,15 +219,15 @@ tools:
 - name: bcftools_mpileup
   owner: iuc
   revisions:
-  - 37757ffb4c5f
+  - 5660b21a0dbd
+  - 03191140c66a
   - f506df85c652
-  - 4e1d23e5c691
+  - cf06b44624c7
+  - 31ea13dfe5e6
+  - 37757ffb4c5f
   - ce9396ddcb2b
+  - 4e1d23e5c691
   - 9c711df3258d
-  - 31ea13dfe5e6
-  - cf06b44624c7
-  - 5660b21a0dbd
-  - 03191140c66a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_mpileup
@@ -239,12 +239,12 @@ tools:
 - name: bcftools_norm
   owner: iuc
   revisions:
-  - 021693fdadaa
-  - a404f786a94c
-  - 48291658fdf6
+  - 6deb4d549bc9
   - ebb2e12a6de1
   - 19905c025d2a
-  - 6deb4d549bc9
+  - 48291658fdf6
+  - 021693fdadaa
+  - a404f786a94c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_norm
@@ -256,13 +256,13 @@ tools:
 - name: bcftools_plugin_counts
   owner: iuc
   revisions:
-  - 69d8b7567281
-  - 5ad5d4243987
-  - c450406f722b
-  - be6b217710af
   - 71c78e0eea52
   - f7879f1e77f9
   - 97e8145d7e30
+  - 5ad5d4243987
+  - c450406f722b
+  - be6b217710af
+  - 69d8b7567281
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_counts
@@ -274,13 +274,13 @@ tools:
 - name: bcftools_plugin_dosage
   owner: iuc
   revisions:
-  - 89720ec3d58e
-  - d31a2e310a52
+  - 79f7a1acc2cd
   - cc7f9a4e186b
+  - 52f9e4a660e3
   - 2514e684f8a3
+  - 89720ec3d58e
   - 0fe007201caf
-  - 52f9e4a660e3
-  - 79f7a1acc2cd
+  - d31a2e310a52
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_dosage
@@ -292,13 +292,13 @@ tools:
 - name: bcftools_plugin_fill_an_ac
   owner: iuc
   revisions:
-  - 0a62420cb9cd
+  - 230e424bde67
   - 1411bef27a75
-  - 75ddd081f608
   - 99f4a81a47be
   - 80e6e399ccd0
-  - 230e424bde67
+  - 0a62420cb9cd
   - 026a989b7cee
+  - 75ddd081f608
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_an_ac
@@ -310,13 +310,13 @@ tools:
 - name: bcftools_plugin_fill_tags
   owner: iuc
   revisions:
+  - c01be0ab9806
+  - 5acfca5a76af
   - 444e6a756c35
   - 5808f77b2bb6
-  - 5acfca5a76af
+  - ba20340426fe
   - e493702b19eb
-  - c01be0ab9806
   - bca7ce81688f
-  - ba20340426fe
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_tags
@@ -328,13 +328,13 @@ tools:
 - name: bcftools_plugin_fixploidy
   owner: iuc
   revisions:
-  - d52b8947b269
-  - 68fec03a63b7
-  - 4d236c696844
   - 7fe09ad6a939
-  - 157ffcdd3fa7
+  - 68fec03a63b7
   - 12152af85697
+  - 157ffcdd3fa7
   - f2482aa4862e
+  - d52b8947b269
+  - 4d236c696844
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fixploidy
@@ -346,13 +346,13 @@ tools:
 - name: bcftools_plugin_impute_info
   owner: iuc
   revisions:
-  - 29ba253e2e05
-  - 27e2611639a9
-  - cbe39e530cbf
-  - 0e5d11004815
-  - 8dbce095986c
   - 8f2fc0ab30fb
+  - 0e5d11004815
   - 6f8e223f78f3
+  - cbe39e530cbf
+  - 8dbce095986c
+  - 29ba253e2e05
+  - 27e2611639a9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_impute_info
@@ -364,12 +364,12 @@ tools:
 - name: bcftools_plugin_mendelian
   owner: iuc
   revisions:
+  - 88bb477f45f7
   - a8630d4fbaf8
-  - 9708e3086f32
+  - 3ff5654b4e7d
   - e0a856def0b0
   - a367a15c6de5
-  - 3ff5654b4e7d
-  - 88bb477f45f7
+  - 9708e3086f32
   - af36eb5418fe
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -383,12 +383,12 @@ tools:
   owner: iuc
   revisions:
   - 5c9729d54721
-  - 03e30f06f15f
   - 4ed46189d6c6
-  - 96d0145c041a
-  - 6ce175385dd9
   - 31c096c6b156
+  - 03e30f06f15f
+  - 96d0145c041a
   - 2f4eef1f0d22
+  - 6ce175385dd9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_missing2ref
@@ -400,13 +400,13 @@ tools:
 - name: bcftools_plugin_setgt
   owner: iuc
   revisions:
+  - 11af7fce71cf
+  - 262bba5b90ef
   - 40daf124be88
-  - 2c4941386820
   - 46eb13bc2c73
-  - 11af7fce71cf
-  - a1aad8b559c6
   - 09f5e45a8212
-  - 262bba5b90ef
+  - 2c4941386820
+  - a1aad8b559c6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_setgt
@@ -418,14 +418,14 @@ tools:
 - name: bcftools_plugin_tag2tag
   owner: iuc
   revisions:
-  - f272b8ba0983
-  - 882b2e649602
   - 4b796b58938b
-  - 8cb121b6a1d2
-  - 12038f59c0f4
-  - 6cbb9c47795c
   - 743cd1472aeb
+  - 8cb121b6a1d2
+  - f272b8ba0983
+  - 882b2e649602
   - 0594ea1417c8
+  - 6cbb9c47795c
+  - 12038f59c0f4
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_tag2tag
@@ -437,13 +437,13 @@ tools:
 - name: bcftools_query_list_samples
   owner: iuc
   revisions:
-  - cced6715f926
-  - eccb508bb678
-  - adee7e8b746f
-  - dba06328556a
   - 238f78e38a8b
-  - 18cf9de1cf73
+  - adee7e8b746f
   - 8c3ff4ef1190
+  - eccb508bb678
+  - cced6715f926
+  - 18cf9de1cf73
+  - dba06328556a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query_list_samples
@@ -455,13 +455,13 @@ tools:
 - name: bcftools_query
   owner: iuc
   revisions:
-  - 9f36041495a3
-  - e0ad88dec40d
   - a850902cac64
   - c9935c9e8a24
-  - f64e7ca2efd2
-  - 3ce32adc55b2
   - e53501abf992
+  - e0ad88dec40d
+  - 9f36041495a3
+  - 3ce32adc55b2
+  - f64e7ca2efd2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query
@@ -473,13 +473,13 @@ tools:
 - name: bcftools_reheader
   owner: iuc
   revisions:
-  - d68c43202172
   - fd3539749127
-  - b7be725976b6
-  - 79489d5685dd
-  - d43eb39b989e
   - 8057cf55fa41
   - 4db0695a6fc7
+  - b7be725976b6
+  - d68c43202172
+  - d43eb39b989e
+  - 79489d5685dd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_reheader
@@ -491,13 +491,13 @@ tools:
 - name: bcftools_roh
   owner: iuc
   revisions:
+  - 6a636d58dfc2
+  - 58091e1be01b
   - b0d39ef600a7
+  - 5296d26b0373
   - 1ccf0e7fb4f6
-  - 6a636d58dfc2
   - bdc67eeb0bc9
   - 78cd8b69da4c
-  - 5296d26b0373
-  - 58091e1be01b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_roh
@@ -509,13 +509,13 @@ tools:
 - name: bcftools_stats
   owner: iuc
   revisions:
-  - e8af591435d1
-  - '388983871932'
-  - b17394940c7a
   - 4d3ce9dc1525
   - a2f8dc22d7c0
-  - baa8823f8073
+  - b17394940c7a
   - b641062a2587
+  - e8af591435d1
+  - baa8823f8073
+  - '388983871932'
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_stats
@@ -527,13 +527,13 @@ tools:
 - name: bcftools_view
   owner: iuc
   revisions:
-  - 59fa8742285e
-  - d1f8f55f564d
   - 3ca3de4e5291
+  - 38d75661c235
   - 3a233c8eb814
   - abc3ced31cd1
   - e6b5cbbf449b
-  - 38d75661c235
+  - 59fa8742285e
+  - d1f8f55f564d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_view
@@ -559,8 +559,8 @@ tools:
 - name: vcfallelicprimitives
   owner: devteam
   revisions:
-  - 57a16b310fe8
   - a8a4f94aa321
+  - 57a16b310fe8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotate
@@ -573,22 +573,22 @@ tools:
 - name: vcfannotategenotypes
   owner: devteam
   revisions:
-  - 70bc6ced57f7
   - 84959112d9a6
+  - 70bc6ced57f7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbedintersect
   owner: devteam
   revisions:
-  - aea8e90ad788
   - 9edfe5145ba8
+  - aea8e90ad788
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbreakcreatemulti
   owner: devteam
   revisions:
-  - 9fd5d91eb91b
   - 690b1d846263
+  - 9fd5d91eb91b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcheck
@@ -622,16 +622,16 @@ tools:
 - name: vcffilter
   owner: devteam
   revisions:
-  - 6b935ab36d7b
-  - fa24bf0598f4
   - eae7c08ebb6f
+  - fa24bf0598f4
+  - 6b935ab36d7b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffixup
   owner: devteam
   revisions:
-  - fc5a64fdd5b2
   - 11f62f071125
+  - fc5a64fdd5b2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfflatten
@@ -644,36 +644,36 @@ tools:
 - name: vcfgeno2haplo
   owner: devteam
   revisions:
-  - a3dea556218d
   - b890055e07bd
+  - a3dea556218d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfgenotypes
   owner: devteam
   revisions:
-  - f5653ed90dfd
   - a60ae8af21a1
+  - f5653ed90dfd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfhethom
   owner: devteam
   revisions:
-  - b07ef36cf7e6
   - 8254e0fe7358
+  - b07ef36cf7e6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfleftalign
   owner: devteam
   revisions:
-  - 29f9b782727e
   - d2406f98a782
+  - 29f9b782727e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfprimers
   owner: devteam
   revisions:
-  - 17096387c0e6
   - d226a7327946
+  - 17096387c0e6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfrandomsample
@@ -686,8 +686,8 @@ tools:
 - name: vcfselectsamples
   owner: devteam
   revisions:
-  - 2ba3b87f904f
   - 958b6484a7f1
+  - 2ba3b87f904f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfsort
@@ -724,7 +724,7 @@ tools:
 - name: vcfvcfintersect
   owner: devteam
   revisions:
-  - 6f6bf10618d7
   - 166c4f50525f
+  - 6f6bf10618d7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/viral_tools.yml b/staging.gvl.org.au/viral_tools.yml
index 15250eab7..06370d956 100644
--- a/staging.gvl.org.au/viral_tools.yml
+++ b/staging.gvl.org.au/viral_tools.yml
@@ -2,7 +2,7 @@ tools:
 - name: quasitools
   owner: nml
   revisions:
-  - 9def47f3c1e4
   - 18aad692772a
+  - 9def47f3c1e4
   tool_panel_section_label: Viral Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/annotation.yml b/usegalaxy.org.au/annotation.yml
index 3ec306cb6..9b376deb9 100644
--- a/usegalaxy.org.au/annotation.yml
+++ b/usegalaxy.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
+  - 4efdca267d51
   - 3f3e247c053d
+  - c2ef298da409
   - 78c75f134c16
-  - 4efdca267d51
   - 6e9aea89e388
-  - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 44018dd6b447
-  - b5d8e5475247
+  - fe3ca740a485
   - cd2480f35935
+  - b5d8e5475247
+  - 4f2967b27e67
+  - f29602ae449e
+  - 44018dd6b447
+  - 1aae04680c4b
   - 3e1f6f6d557e
-  - fe3ca740a485
   - 133f36c29579
-  - 1aae04680c4b
-  - f29602ae449e
-  - 4f2967b27e67
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -57,17 +57,17 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 7be22100e5e1
-  - dc027fa56d55
   - 6519ebe25019
+  - dc027fa56d55
+  - 7be22100e5e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
+  - 09855551d713
   - 28433faa6e42
   - ca6d970d931c
-  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,9 +79,9 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 7355bbf5e05f
-  - fe48aa4ccd5e
   - 8fd427007e93
+  - fe48aa4ccd5e
+  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -106,9 +106,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
-  - d9c3016f7283
   - 9d1fbff733cf
+  - d9c3016f7283
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,54 +126,54 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 756376aeb1ae
-  - 14f588312c56
-  - 9f2455341fac
-  - 582fd74dc2a1
   - 3bbe70fef6df
+  - 9f2455341fac
+  - 14f588312c56
+  - 756376aeb1ae
   - b6b5cd37f2a2
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 989f7c061f35
   - 73428a792541
+  - 989f7c061f35
   - 1691af4a0d17
+  - 30fb23d4c31c
   - a230ea445788
   - 0ffe5be70caf
-  - 30fb23d4c31c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 5a5ae61da69c
   - e94187d661df
-  - 30f08d74024f
-  - 494f0bb4a993
+  - 5a5ae61da69c
   - 563a19373357
+  - 494f0bb4a993
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
+  - d6c7106b7b2e
   - 7abc5f6dd595
+  - 1bc5a03faf2e
   - 2bba2ff070d9
   - f31125bb85ea
-  - 1bc5a03faf2e
-  - d6c7106b7b2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 54961e026fe4
   - 520e30695ec3
-  - d3af38b9c7e1
-  - fed64e676186
   - b3cf4684e9c7
+  - d3af38b9c7e1
   - 52af33194019
+  - 54961e026fe4
+  - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -185,9 +185,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 07d7991bf205
   - 79261884facd
   - 2aea122fbd25
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -199,10 +199,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
   - 43798b4caee0
-  - 8b3e3657034e
+  - 602de62d995b
   - ef2ad746b589
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -262,8 +262,8 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - 033755194fe9
   - 624606f7c996
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -288,9 +288,9 @@ tools:
   owner: crs4
   revisions:
   - bf68eb663bc3
+  - a17498c603ec
   - 8a22554cdde2
   - d643e3b03500
-  - a17498c603ec
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -302,8 +302,8 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
@@ -322,21 +322,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 268d162b9c49
+  - 8f92c2b26e6d
+  - 68693743661e
+  - cfcf33df7fc0
+  - 5c7b70713fb5
   - 5a29ab10dba6
   - 9473cd297a76
-  - 5c7b70713fb5
-  - 8f92c2b26e6d
-  - 268d162b9c49
   - 5b80f544c67f
-  - cfcf33df7fc0
-  - 68693743661e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
   - 2b3e65a4252f
+  - 09d6806c609e
   - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -356,22 +356,22 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - e1a9d6fd258d
+  - 037a11682176
   - ba6f87115e13
+  - 200c378d85f3
+  - ac8250086ac3
+  - e1a9d6fd258d
   - 809dfc93d593
   - 45083d070fb8
-  - ac8250086ac3
-  - 37213cf56392
   - 2c68b0c38785
-  - 037a11682176
-  - 200c378d85f3
+  - 37213cf56392
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction
diff --git a/usegalaxy.org.au/assembly.yml b/usegalaxy.org.au/assembly.yml
index f207e2b07..ebe11688e 100644
--- a/usegalaxy.org.au/assembly.yml
+++ b/usegalaxy.org.au/assembly.yml
@@ -2,12 +2,12 @@ tools:
 - name: abyss
   owner: iuc
   revisions:
-  - 890b794c997d
+  - 841084c5fc46
+  - a929ce596a34
   - fa5259cc561b
   - 0e93176640ac
-  - 841084c5fc46
   - 553bfe8bd0b5
-  - a929ce596a34
+  - 890b794c997d
   - 7547fcab5d19
   - 8f1b150a2487
   tool_panel_section_label: Assembly
@@ -15,29 +15,29 @@ tools:
 - name: bandage
   owner: iuc
   revisions:
-  - 067592b6b312
+  - ddddce450736
   - 21e491ad532a
   - b9e31c5c01c7
-  - 94fe43e75ddc
-  - ddddce450736
+  - 067592b6b312
   - b2860df42e16
+  - 94fe43e75ddc
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bellerophon
   owner: iuc
   revisions:
-  - 25ca5d73aedf
   - 321347bd0494
+  - 25ca5d73aedf
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bionano_scaffold
   owner: bgruening
   revisions:
-  - 5258e18bbe23
-  - 3371c5bdc17a
-  - a7f16f24e9a1
   - faee8629b460
   - 22286dab5aa1
+  - 3371c5bdc17a
+  - a7f16f24e9a1
+  - 5258e18bbe23
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blobtoolkit
@@ -49,29 +49,29 @@ tools:
 - name: busco
   owner: iuc
   revisions:
-  - 0d243f458b53
-  - 46ae58b1d792
-  - cf13a1e03e5b
-  - 2dd755c1c6ff
-  - 5ecdeca79a0d
+  - 4048d82f0c88
   - bb935709506a
-  - 602fb8e63aa7
-  - e4bd1e99bacf
-  - 2a5b8b9936bf
+  - 5ecdeca79a0d
   - 94170eee0ad8
+  - 0d243f458b53
+  - e4bd1e99bacf
   - 1440ae06552f
-  - 4048d82f0c88
+  - 2dd755c1c6ff
+  - 2a5b8b9936bf
   - 1e62c28ba91d
   - 41030a6c03b7
+  - cf13a1e03e5b
+  - 602fb8e63aa7
+  - 46ae58b1d792
   - e824f5d958d0
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: canu
   owner: bgruening
   revisions:
-  - 5732f959936a
   - c5b7390290b1
   - 86f150c8019d
+  - 5732f959936a
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cap3
@@ -83,36 +83,36 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
-  - 3ee0ef312022
-  - 276f5d8712d5
-  - 8d4f03b5fe9d
   - cb8dfd28c16f
   - 1ce9b1d72ec3
+  - 8d4f03b5fe9d
   - e27815e82dd4
+  - 3ee0ef312022
+  - 276f5d8712d5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genomescope
   owner: iuc
   revisions:
+  - b2f674562a18
   - 01210c4e9144
   - 3169a38c2656
-  - b2f674562a18
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: getorganelle
   owner: iuc
   revisions:
   - 8b330a577046
-  - 06bcf65179fb
   - 7348b69e5109
+  - 06bcf65179fb
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfastats
   owner: bgruening
   revisions:
   - 5127a713de83
-  - 3ef480892a9f
   - 3fba9c77550a
+  - 3ef480892a9f
   - 690c2caa367e
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -125,21 +125,21 @@ tools:
 - name: hifiasm
   owner: bgruening
   revisions:
-  - f3c89da3af16
-  - 5bec28269d95
+  - 0ee0c3089254
   - ec9e21e9c71b
-  - 366a11d316a7
-  - 2061fb3b81b4
+  - 60024a528cbd
+  - da9d8bf98802
   - 41cea2aa2dce
-  - 045c7c3d8e59
-  - 71740308d412
+  - 3f7be05a1597
+  - f3c89da3af16
+  - 366a11d316a7
   - 5f625c63b8bc
   - 6505bd37670d
+  - 2061fb3b81b4
+  - 045c7c3d8e59
+  - 5bec28269d95
   - 9ef6920c3089
-  - 0ee0c3089254
-  - 3f7be05a1597
-  - da9d8bf98802
-  - 60024a528cbd
+  - 71740308d412
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: links
@@ -157,39 +157,39 @@ tools:
 - name: megahit
   owner: iuc
   revisions:
+  - de387b2b2803
   - 14ddfc8ffb93
   - 7518ee87b53d
   - a96f3ad4e0d8
-  - de387b2b2803
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: merqury
   owner: iuc
   revisions:
-  - 39edec572bae
   - 09c589057ee8
   - f8113c25bc6b
+  - 39edec572bae
   - 9d79beb19ac3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: meryl
   owner: iuc
   revisions:
-  - 29dabd8db6f2
   - 51c2360aa807
+  - 29dabd8db6f2
   - eadfd71dde37
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaspades
   owner: nml
   revisions:
-  - 606b09cc9860
-  - f338e9942b27
-  - fd128c111ab0
-  - 3ca2d2a9068c
   - eb7a370f6588
   - e731ea24e48d
+  - fd128c111ab0
+  - f338e9942b27
   - 2ecf5a570907
+  - 606b09cc9860
+  - 3ca2d2a9068c
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minia
@@ -202,10 +202,10 @@ tools:
   owner: iuc
   revisions:
   - 8b6d0d85252b
-  - 8dee0218ac7d
+  - 80d1250bd5fd
   - a7b889b90140
   - 73a3846701e1
-  - 80d1250bd5fd
+  - 8dee0218ac7d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitobim
@@ -217,9 +217,9 @@ tools:
 - name: novoplasty
   owner: iuc
   revisions:
-  - 15200570e926
-  - 64a1c751d99b
   - 7c2f5268d01c
+  - 64a1c751d99b
+  - 15200570e926
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pilon
@@ -231,74 +231,74 @@ tools:
 - name: pretext_map
   owner: iuc
   revisions:
-  - 2b16ba799da9
   - 02831bf9e95f
-  - d256a51a656b
-  - 8fef980d48b5
+  - 2b16ba799da9
   - bbe19ef04a74
   - dfb8a4497339
+  - 8fef980d48b5
+  - d256a51a656b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: purge_dups
   owner: iuc
   revisions:
   - a315c25dc813
-  - e9bd16ba5ebd
   - 76d4cbefff85
+  - e9bd16ba5ebd
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: quast
   owner: iuc
   revisions:
   - 72472698a2df
-  - 7594365c546b
-  - 875d0f36d66f
+  - 675488238c96
   - ebb0dcdb621a
   - 59db8ea8c845
-  - 342a1d1fed7b
+  - 875d0f36d66f
   - 3061c8b029e5
+  - 7594365c546b
+  - 342a1d1fed7b
   - 6fcbee531de6
-  - 675488238c96
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: racon
   owner: bgruening
   revisions:
-  - 78c533842eeb
   - aa39b19ca11e
-  - d865b62f501c
   - cd06929b224b
-  - a199cd7ac344
   - 39bed8de8017
+  - d865b62f501c
+  - a199cd7ac344
+  - 78c533842eeb
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raven
   owner: iuc
   revisions:
-  - 3edba9afc9bc
   - 33b7d8481a76
   - f8564b2d7f63
-  - 2b2a352488fa
+  - 3edba9afc9bc
   - f11b994b7eb2
+  - 2b2a352488fa
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnaspades
   owner: iuc
   revisions:
-  - e122f9101584
-  - 53c2bc8c2ae3
+  - 378e55aeeb25
   - 1d06c8b38e77
   - ef69617ecb42
-  - 378e55aeeb25
+  - 53c2bc8c2ae3
+  - e122f9101584
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salsa
   owner: iuc
   revisions:
-  - ba7b0f11e470
-  - ab5b7f6b7198
-  - f77f7a7f3b83
   - 9a22227bb6d0
+  - f77f7a7f3b83
+  - ab5b7f6b7198
+  - ba7b0f11e470
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: shasta
@@ -310,51 +310,51 @@ tools:
 - name: shovill
   owner: iuc
   revisions:
-  - 83ead2be47b2
   - d9f6a00b6db7
-  - ee17a294d3a3
-  - 865119fcb694
   - 196a599ec43d
   - ad80238462c1
+  - 865119fcb694
+  - 83ead2be47b2
   - f698c7604b3b
+  - ee17a294d3a3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: smudgeplot
   owner: galaxy-australia
   revisions:
-  - 5a0ddb4dc3a4
-  - 5e0825476fb7
   - 24e471d13fe9
+  - 5e0825476fb7
+  - 5a0ddb4dc3a4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_biosyntheticspades
   owner: iuc
   revisions:
   - 904bf932cf78
-  - 1fc82fe7ebef
   - 1bb12736175c
-  - 051fd2db8a27
   - 7490b213baa9
+  - 051fd2db8a27
+  - 1fc82fe7ebef
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_coronaspades
   owner: iuc
   revisions:
   - fee85957cebe
-  - ad8b536d1caa
-  - 808b3a0a6716
-  - 34305b013402
   - d6e617c4e338
+  - 34305b013402
+  - 808b3a0a6716
+  - ad8b536d1caa
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaplasmidspades
   owner: iuc
   revisions:
+  - 6b5a5842531e
+  - 8d4b90bf9caf
   - 21da31ed41a1
   - b8002c3f7141
-  - 6b5a5842531e
   - e5a3b75a271f
-  - 8d4b90bf9caf
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaviralspades
@@ -362,109 +362,109 @@ tools:
   revisions:
   - 328aa71f0f3c
   - f1532cb33c75
-  - 2a10645aeadd
   - 9de69775f512
   - 86f66ab58e14
+  - 2a10645aeadd
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_plasmidspades
   owner: iuc
   revisions:
-  - 340bc17f49cf
-  - e41dcb0e913b
   - 85fb02c43042
-  - 6aad515a5270
   - 1708851f8804
+  - 6aad515a5270
+  - 340bc17f49cf
+  - e41dcb0e913b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_rnaviralspades
   owner: iuc
   revisions:
-  - b65a43f70b99
-  - 249f6a28c751
   - d5fb354f745d
   - b3490b036c5a
   - d159735a6a9f
+  - 249f6a28c751
+  - b65a43f70b99
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades
   owner: nml
   revisions:
-  - 7897763d14ec
-  - dd7ad84f3943
-  - 9006e5836729
-  - d2d1df21dfb9
   - 33368fec3b70
   - b7829778729f
+  - 9006e5836729
+  - dd7ad84f3943
+  - d2d1df21dfb9
+  - 7897763d14ec
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_cluster
   owner: iuc
   revisions:
-  - 8f631679571f
   - 6f4c8ad6ea01
-  - ced385aa976d
   - 189e837009c9
+  - ced385aa976d
   - 505a9833ab5d
+  - 8f631679571f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_consensus
   owner: iuc
   revisions:
-  - 9ded6109434a
+  - 356afed970b4
   - e59bee4565b3
+  - 9ded6109434a
   - d40ed4eb0c0e
   - 19bdfd1e6fe3
-  - 356afed970b4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_partition
   owner: iuc
   revisions:
   - 6dd935e4984b
-  - 4688ae3b49b5
-  - 80a17897564d
   - ebd801e712bc
+  - 80a17897564d
   - b23249f81bc4
+  - 4688ae3b49b5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_reconcile_msa
   owner: iuc
   revisions:
-  - 59bd28f6265d
   - cb1e3db43020
   - b5e35a2ca4f3
-  - 937ea677d437
+  - 59bd28f6265d
   - b64696992ee9
+  - 937ea677d437
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_subsample
   owner: iuc
   revisions:
+  - cb4768eeca3b
   - 6015aa0303f2
+  - 05bd7504fdb2
   - 2628f6790eda
   - 383bb5ad32e2
-  - cb4768eeca3b
-  - 05bd7504fdb2
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unicycler
   owner: iuc
   revisions:
-  - d10bdad2fd17
   - 0a3a602cd1e3
-  - 6e26c9afd301
   - 9e3e80cc4ad4
   - e92675014ac9
+  - 6e26c9afd301
+  - d10bdad2fd17
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvet
   owner: devteam
   revisions:
-  - 920677cd220f
   - 8d09f8be269e
-  - 08256557922f
   - 5da9a0e2fb2d
+  - 920677cd220f
+  - 08256557922f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvetoptimiser
@@ -478,7 +478,7 @@ tools:
 - name: yahs
   owner: iuc
   revisions:
-  - 39495e107274
   - 425e63adcc5d
+  - 39495e107274
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bacterial_typing.yml b/usegalaxy.org.au/bacterial_typing.yml
index 09a43bb24..41138f6b6 100644
--- a/usegalaxy.org.au/bacterial_typing.yml
+++ b/usegalaxy.org.au/bacterial_typing.yml
@@ -2,16 +2,16 @@ tools:
 - name: integron_finder
   owner: iuc
   revisions:
-  - 1ae00120dd24
   - 4768f7f8e93f
+  - 1ae00120dd24
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mlst
   owner: iuc
   revisions:
+  - 8e8dc9a1e3e5
   - 1f5641a52664
   - 31812e7a1315
-  - 8e8dc9a1e3e5
   - ded48b36f3b7
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -19,7 +19,7 @@ tools:
   owner: nml
   revisions:
   - 17fcac7ddf54
-  - 24a7a95867b0
   - 5c8ff92e38a9
+  - 24a7a95867b0
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bb_tools.yml b/usegalaxy.org.au/bb_tools.yml
index 434a88153..05eb64807 100644
--- a/usegalaxy.org.au/bb_tools.yml
+++ b/usegalaxy.org.au/bb_tools.yml
@@ -3,7 +3,7 @@ tools:
   owner: iuc
   revisions:
   - 159b04e36791
-  - a9c9d768b751
   - 204a131e47db
+  - a9c9d768b751
   tool_panel_section_label: BB Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bed.yml b/usegalaxy.org.au/bed.yml
index 4b10ad5f2..db3455b77 100644
--- a/usegalaxy.org.au/bed.yml
+++ b/usegalaxy.org.au/bed.yml
@@ -2,16 +2,16 @@ tools:
 - name: bedtools
   owner: iuc
   revisions:
-  - 589e7e57fd6d
+  - 87ee588b3d45
   - a68aa6c1204a
-  - b28e0cfa7ba1
+  - a8eabd2838f6
   - dde39ba9c031
-  - e19bebe96cd2
-  - 0a5c785ac6db
-  - 07e8b80f278c
-  - 87ee588b3d45
   - ce3c7f062223
-  - a8eabd2838f6
   - a1a923cd89e8
+  - 07e8b80f278c
+  - b28e0cfa7ba1
+  - 0a5c785ac6db
+  - 589e7e57fd6d
+  - e19bebe96cd2
   tool_panel_section_label: BED
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/blast.yml b/usegalaxy.org.au/blast.yml
index b706013fb..c6a2d80d3 100644
--- a/usegalaxy.org.au/blast.yml
+++ b/usegalaxy.org.au/blast.yml
@@ -8,22 +8,22 @@ tools:
 - name: diamond
   owner: bgruening
   revisions:
-  - 54f751e413f4
+  - 62c9df8382c2
   - e8ac2b53f262
   - f921014aba5a
-  - 62c9df8382c2
+  - 54f751e413f4
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_blast_plus
   owner: devteam
   revisions:
-  - 0e3cf9594bb7
+  - e25d3acf6e68
+  - acf4e47b734c
   - 6f386c5dc4fb
   - 5edc472ec434
-  - 2889433c7ae1
   - a52d2d93e595
-  - acf4e47b734c
-  - e25d3acf6e68
+  - 2889433c7ae1
+  - 0e3cf9594bb7
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: taxonomy_krona_chart
diff --git a/usegalaxy.org.au/chemicaltoolbox.yml b/usegalaxy.org.au/chemicaltoolbox.yml
index d5196bfd8..ec027758f 100644
--- a/usegalaxy.org.au/chemicaltoolbox.yml
+++ b/usegalaxy.org.au/chemicaltoolbox.yml
@@ -2,13 +2,13 @@ tools:
 - name: ambertools_acpype
   owner: chemteam
   revisions:
-  - 710301bc46fa
-  - 095ad4d096d1
-  - c8cdde00b105
   - 6ca543ec1bf8
-  - 27ee142314a9
   - da6bd1975a71
+  - 710301bc46fa
+  - 27ee142314a9
   - f4230f116196
+  - c8cdde00b105
+  - 095ad4d096d1
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: autodock_vina_prepare_box
@@ -87,8 +87,8 @@ tools:
 - name: enumerate_charges
   owner: bgruening
   revisions:
-  - 67ee76f0e497
   - 2a868592ebcb
+  - 67ee76f0e497
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fpocket
@@ -106,40 +106,40 @@ tools:
 - name: gmx_editconf
   owner: chemteam
   revisions:
-  - 0fac8e2afc13
-  - 88076940fa94
   - bfb65cb551d8
+  - 88076940fa94
   - 79cfd9ead848
+  - 0fac8e2afc13
   - 3b8a9d5ced85
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_em
   owner: chemteam
   revisions:
-  - 715cd0e87781
+  - b46d4b4d995c
   - d532b7e5f64b
-  - eb6564a60136
-  - f5d979cb4b54
   - 55918daa5651
-  - b46d4b4d995c
+  - f5d979cb4b54
+  - eb6564a60136
+  - 715cd0e87781
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_energy
   owner: chemteam
   revisions:
-  - d2f955aea23a
   - 5579659312e6
   - f26afd1b7104
-  - fdf2cc80adb5
   - dae135dfd519
+  - fdf2cc80adb5
+  - d2f955aea23a
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_merge_topology_files
   owner: chemteam
   revisions:
+  - d1d0efda35c0
   - bc31d02be922
   - 319a28774da9
-  - d1d0efda35c0
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_setup
@@ -148,49 +148,49 @@ tools:
   - ed736e6eee39
   - 2c349b027a01
   - 4da9ee404eab
-  - cac1886249a2
   - 070e3ecc3fda
+  - cac1886249a2
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_sim
   owner: chemteam
   revisions:
-  - d1f803b5943c
+  - 73008ef1f487
+  - 807aa4c9293d
+  - f197e34c33a9
   - 525ca7c8065f
+  - d1f803b5943c
   - c0c9a5024177
-  - 73008ef1f487
-  - da8753545526
   - 2e219a2d9327
-  - f197e34c33a9
-  - 807aa4c9293d
+  - da8753545526
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_solvate
   owner: chemteam
   revisions:
-  - 27ea4e1a3f95
   - 7568ae18908a
-  - 2c8ed1b52bf7
+  - 61094e01eff9
   - c4fbab8e03c5
+  - 2c8ed1b52bf7
+  - 27ea4e1a3f95
   - 1809414a9454
-  - 61094e01eff9
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: md_converter
   owner: chemteam
   revisions:
-  - ccfbd956a2d3
   - ba83f0923369
+  - d7ec25187599
   - 730ef07b90ae
+  - ccfbd956a2d3
   - 79e8ab8f1e81
-  - d7ec25187599
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mdanalysis_cosine_analysis
   owner: chemteam
   revisions:
-  - 9a3a1f698fc6
   - 48d6a6eb438b
+  - 9a3a1f698fc6
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: natural_product_likeness
@@ -234,10 +234,10 @@ tools:
 - name: sucos_max_score
   owner: bgruening
   revisions:
+  - d4c67ced6abc
   - 85fad59f8168
   - 9b48456a96fe
   - bf99565cec1f
-  - d4c67ced6abc
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vmd_hbonds
diff --git a/usegalaxy.org.au/chip_seq.yml b/usegalaxy.org.au/chip_seq.yml
index 84fe701b7..d3bd77261 100644
--- a/usegalaxy.org.au/chip_seq.yml
+++ b/usegalaxy.org.au/chip_seq.yml
@@ -2,9 +2,9 @@ tools:
 - name: diffbind
   owner: bgruening
   revisions:
+  - c97a786e8fb5
   - fa56d93f7980
   - 163688bb8f73
-  - c97a786e8fb5
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genrich
@@ -16,25 +16,25 @@ tools:
 - name: macs21
   owner: pjbriggs
   revisions:
-  - 11cf21ee4242
   - 4124781932db
+  - 11cf21ee4242
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: macs2
   owner: iuc
   revisions:
-  - 640d3af5d833
-  - 86e2413cf3f8
   - 424aefbd7777
   - 495a4173006f
+  - 86e2413cf3f8
+  - 640d3af5d833
   - f5d67c722d67
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnachipintegrator
   owner: pjbriggs
   revisions:
-  - b695071de766
   - 087d9872fb0d
+  - b695071de766
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sicer
diff --git a/usegalaxy.org.au/collection_operations.yml b/usegalaxy.org.au/collection_operations.yml
index 21119e285..8d8dc6ffe 100644
--- a/usegalaxy.org.au/collection_operations.yml
+++ b/usegalaxy.org.au/collection_operations.yml
@@ -10,8 +10,8 @@ tools:
   owner: nml
   revisions:
   - 33151a38533a
-  - 830961c48e42
   - 90981f86000f
+  - 830961c48e42
   - 25136a2b0cfe
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -25,9 +25,9 @@ tools:
 - name: split_file_to_collection
   owner: bgruening
   revisions:
-  - baabc30154cd
   - 6cbe2f30c2d7
   - 0046692724f9
+  - baabc30154cd
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unzip
diff --git a/usegalaxy.org.au/convert_formats.yml b/usegalaxy.org.au/convert_formats.yml
index 9d5ad50ee..5f34c812b 100644
--- a/usegalaxy.org.au/convert_formats.yml
+++ b/usegalaxy.org.au/convert_formats.yml
@@ -8,30 +8,30 @@ tools:
 - name: biom_add_metadata
   owner: iuc
   revisions:
+  - 6ef0b5664c69
   - dad9da48a09a
-  - f3a19509108a
   - 0b3c3ad92827
-  - 367b1ed91207
+  - f3a19509108a
+  - e3cbd2287f63
   - a3b86937ead6
+  - 367b1ed91207
   - 5e1240a87bcb
-  - e3cbd2287f63
-  - 6ef0b5664c69
   - 4a6ee918c13a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: biom_convert
   owner: iuc
   revisions:
-  - 33c99804a32f
-  - e177a8ea0bf1
   - 54ccb7e1f49a
+  - e177a8ea0bf1
+  - 33c99804a32f
+  - 72ed72122deb
   - 501c21cce614
-  - e525f9ffb9ac
   - a4db66553a61
+  - 1b5fc03380d4
   - bd46669113b9
+  - e525f9ffb9ac
   - 584008e574b2
-  - 1b5fc03380d4
-  - 72ed72122deb
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bp_genbank2gff3
@@ -49,15 +49,15 @@ tools:
 - name: fasta_to_tabular
   owner: devteam
   revisions:
-  - 7e801ab2b70e
   - e7ed3c310b74
+  - 7e801ab2b70e
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_to_fasta
   owner: devteam
   revisions:
-  - 77b41c89d856
   - 8979c288aefb
+  - 77b41c89d856
   - 186b8d913e6c
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -103,8 +103,8 @@ tools:
 - name: mz_to_sqlite
   owner: galaxyp
   revisions:
-  - f5c632894818
   - 8190f6083c0d
+  - f5c632894818
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tabular_to_fasta
@@ -123,11 +123,11 @@ tools:
 - name: thermo_raw_file_converter
   owner: galaxyp
   revisions:
+  - 63769c4217a7
+  - 26c6706bfb07
   - 92ac8e086317
-  - 19e45916daf9
   - b9b385097f13
-  - 26c6706bfb07
-  - 63769c4217a7
+  - 19e45916daf9
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2maf
diff --git a/usegalaxy.org.au/deeptools.yml b/usegalaxy.org.au/deeptools.yml
index fd93781f5..4c61681d4 100644
--- a/usegalaxy.org.au/deeptools.yml
+++ b/usegalaxy.org.au/deeptools.yml
@@ -2,11 +2,11 @@ tools:
 - name: deeptools_bam_compare
   owner: bgruening
   revisions:
-  - 29451af70c52
   - 268e91e540ee
-  - 5f6d123679f4
   - a1ca9bccc7f2
+  - 29451af70c52
   - de72ba3ed6f2
+  - 5f6d123679f4
   - e821645ef8fc
   - c929a006727f
   tool_panel_section_label: DeepTools
@@ -14,193 +14,193 @@ tools:
 - name: deeptools_bam_coverage
   owner: bgruening
   revisions:
-  - 0e49b109abc2
+  - 0e143b4c3987
   - 2d2cf5c1ea8a
   - 7a7fd0f5f15d
-  - 0e143b4c3987
+  - 0e49b109abc2
+  - 12af64f93288
   - bb1e4f63e0e6
   - 5d11599b8a7d
-  - 12af64f93288
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_pe_fragmentsize
   owner: bgruening
   revisions:
-  - 7c1beb6d6eca
-  - 81b1e3e1fc6c
-  - 195e98217334
   - c06951d10364
   - dc059492a995
+  - 7c1beb6d6eca
+  - 195e98217334
+  - 81b1e3e1fc6c
   - 1d848bc4585f
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bigwig_compare
   owner: bgruening
   revisions:
-  - bfff7454b59a
-  - 93eb012d9eed
-  - 71aa86af6762
   - 26e7304d6737
+  - 93eb012d9eed
   - 07418a30ed01
+  - 71aa86af6762
   - 3d211717a775
+  - bfff7454b59a
   - a67ac707496a
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_gc_bias
   owner: bgruening
   revisions:
-  - 26983857c91a
-  - 2bc10a9ca58b
   - 5be24eba848d
-  - dd0b7398bb96
   - 56d5b797ce84
-  - b8858746dc1f
+  - dd0b7398bb96
   - 29fcfd36e90a
+  - b8858746dc1f
+  - 26983857c91a
+  - 2bc10a9ca58b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix_operations
   owner: bgruening
   revisions:
-  - 7ef978dc1b8a
+  - 72bfafe3330b
+  - e6d0bff01239
   - 9384cd033f30
   - 7e6bcd2e5128
-  - 72bfafe3330b
   - c3e012dfe21f
+  - 7ef978dc1b8a
   - ee3a1b0f45f1
-  - e6d0bff01239
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix
   owner: bgruening
   revisions:
+  - b73e213add0c
+  - a60c359ec43c
   - 167788df3b46
   - fd1275e01605
-  - 514fa53b5efb
-  - fb9cf9c97ec4
   - d9a637e83828
+  - 514fa53b5efb
   - 9470f29702f8
-  - b73e213add0c
-  - a60c359ec43c
+  - fb9cf9c97ec4
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_correct_gc_bias
   owner: bgruening
   revisions:
+  - ca0616bb2cdf
   - 86febdcc4283
+  - c34d11ea4ba6
+  - a02cfa31e9cb
   - e479c7ca5570
   - 5bffaa8354a1
-  - c34d11ea4ba6
   - 2c37ce318bc3
-  - ca0616bb2cdf
-  - a02cfa31e9cb
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bam_summary
   owner: bgruening
   revisions:
-  - 69a8621ca2f0
-  - 78f405266706
-  - 192ef85c0b0b
-  - 004aea905d4d
   - 01fb6a7654e6
+  - 69a8621ca2f0
   - 2d466b530754
+  - 004aea905d4d
+  - 78f405266706
   - 1fcb7adc39b8
+  - 192ef85c0b0b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bigwig_summary
   owner: bgruening
   revisions:
-  - d9ce4897dbb2
-  - 2f9e4843f480
-  - db940c262830
-  - d580d6acd1df
+  - 459cfa861f0b
   - 137c4beed34b
+  - d580d6acd1df
+  - d9ce4897dbb2
   - 3c9f0c486cca
-  - 459cfa861f0b
   - 9ecba5e225a6
+  - 2f9e4843f480
+  - db940c262830
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_correlation
   owner: bgruening
   revisions:
+  - 32e451def88c
   - bad3ca889618
-  - fbe773640707
   - bd7db9e2f2cb
+  - fd408d755394
+  - fbe773640707
   - 2c66e43f1c86
   - f264afa9fa6f
-  - fd408d755394
-  - 32e451def88c
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_coverage
   owner: bgruening
   revisions:
-  - 231994413f89
-  - 56bce3c82278
-  - 9368fbc49c8b
-  - 7fda5607e777
   - 3b9d990a0a0e
+  - 231994413f89
   - 7e361d147872
   - 4e12ea27f788
+  - 9368fbc49c8b
+  - 56bce3c82278
+  - 7fda5607e777
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_enrichment
   owner: bgruening
   revisions:
-  - 4431f39ede55
-  - ce4ce3316f74
-  - c03c3384cd81
   - b1779366c8e9
+  - 4431f39ede55
   - e65d16fb2724
-  - 94ca68515826
   - d9114ef1c8a5
+  - ce4ce3316f74
+  - 94ca68515826
+  - c03c3384cd81
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_fingerprint
   owner: bgruening
   revisions:
+  - 793665fff0f8
   - 4ed32329e0ed
+  - f8fc4e5aff9d
   - 23f7c5f1fdaf
   - d57251071381
-  - 793665fff0f8
-  - f8fc4e5aff9d
-  - b88ebb3672a1
   - 2da482e408b8
+  - b88ebb3672a1
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_heatmap
   owner: bgruening
   revisions:
-  - 512155688d98
-  - 010e58e9d822
   - 25d830337d31
-  - a7849312d328
-  - ba6efa77fb79
-  - c60570fa602f
   - a4dfb122e52b
   - e4c7985d4585
+  - c60570fa602f
+  - 010e58e9d822
+  - 512155688d98
+  - ba6efa77fb79
+  - a7849312d328
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_pca
   owner: bgruening
   revisions:
-  - 00d869ea03a1
   - aa200e4f3939
-  - c899e0ccff8c
+  - 69264da0ce77
   - 443d9a9d6d11
-  - 38e3f226248b
+  - c899e0ccff8c
   - 4d678170d29b
-  - 69264da0ce77
+  - 38e3f226248b
+  - 00d869ea03a1
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_profile
   owner: bgruening
   revisions:
-  - a2d70c4fd406
-  - d806504e96d9
   - 10301d137111
   - c361b12d207a
-  - aac8444d6681
   - 6662b1a8d326
+  - a2d70c4fd406
+  - d806504e96d9
+  - aac8444d6681
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/dna_metabarcoding.yml b/usegalaxy.org.au/dna_metabarcoding.yml
index 2589993fa..1c8485e00 100644
--- a/usegalaxy.org.au/dna_metabarcoding.yml
+++ b/usegalaxy.org.au/dna_metabarcoding.yml
@@ -16,8 +16,8 @@ tools:
 - name: obi_convert
   owner: iuc
   revisions:
-  - 4d705e3443a7
   - 374fd9feb032
+  - 4d705e3443a7
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_grep
@@ -44,28 +44,28 @@ tools:
 - name: obi_sort
   owner: iuc
   revisions:
-  - e614dcabd870
   - 12b9e285ca1c
+  - e614dcabd870
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_stat
   owner: iuc
   revisions:
-  - 723a93febe89
   - 39320fee9d70
+  - 723a93febe89
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_tab
   owner: iuc
   revisions:
-  - 5f7003111e32
   - 3299c7d5268f
+  - 5f7003111e32
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_uniq
   owner: iuc
   revisions:
-  - ec215ed98831
   - c0f7b58b4ce4
+  - ec215ed98831
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/emboss.yml b/usegalaxy.org.au/emboss.yml
index 58b655034..c72370b98 100644
--- a/usegalaxy.org.au/emboss.yml
+++ b/usegalaxy.org.au/emboss.yml
@@ -2,9 +2,9 @@ tools:
 - name: emboss_5
   owner: devteam
   revisions:
-  - 63dd26468588
-  - dba489bfcd62
   - ce385837c160
   - 832c20329690
+  - 63dd26468588
+  - dba489bfcd62
   tool_panel_section_label: EMBOSS
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/epigenetics.yml b/usegalaxy.org.au/epigenetics.yml
index e8ca914ea..7f313196d 100644
--- a/usegalaxy.org.au/epigenetics.yml
+++ b/usegalaxy.org.au/epigenetics.yml
@@ -2,10 +2,10 @@ tools:
 - name: bwameth
   owner: iuc
   revisions:
-  - 6da3972210ee
-  - 62f5fab76dfb
   - 29bdbc353f20
   - d82648ad25a3
+  - 6da3972210ee
+  - 62f5fab76dfb
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metilene
@@ -17,7 +17,7 @@ tools:
 - name: pileometh
   owner: bgruening
   revisions:
-  - 183cb55b1729
   - d6787bab7b11
+  - 183cb55b1729
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/fastafastq.yml b/usegalaxy.org.au/fastafastq.yml
index 752baa4b5..971226f58 100644
--- a/usegalaxy.org.au/fastafastq.yml
+++ b/usegalaxy.org.au/fastafastq.yml
@@ -8,37 +8,37 @@ tools:
 - name: cutadapt
   owner: lparsons
   revisions:
-  - 48f587c13075
-  - 093678460093
   - 660cffd8d92a
-  - 8665bcc8b847
+  - 288f97432497
+  - 4e5056fefd88
+  - de6cebe3c043
+  - e4691e1589d3
+  - 49370cb85f0f
   - 5915ea1ec9b1
+  - 135b80fb1ac2
+  - 8665bcc8b847
   - c5e2e5902201
-  - 8c0175e03cee
   - c4b82dce8335
-  - e4691e1589d3
+  - 093678460093
+  - 8c0175e03cee
   - c053d4cad713
-  - 4e5056fefd88
-  - de6cebe3c043
-  - 49370cb85f0f
+  - 48f587c13075
   - 44e2cc14f75b
-  - 135b80fb1ac2
-  - 288f97432497
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_clipping_histogram
   owner: devteam
   revisions:
-  - 8889eb864cef
   - f666895cbebd
   - 9db07fd39f85
+  - 8889eb864cef
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_compute_length
   owner: devteam
   revisions:
-  - 7d37cfda8e00
   - de2db1bdfbf8
+  - 7d37cfda8e00
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_concatenate_by_species
@@ -57,40 +57,40 @@ tools:
   owner: devteam
   revisions:
   - 516b97a23d7e
-  - 859422bcb689
   - 9457a20156db
+  - 859422bcb689
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_merge_files_and_filter_unique_sequences
   owner: galaxyp
   revisions:
-  - f546e7278f04
   - 2904d46167da
+  - f546e7278f04
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_nucleotide_changer
   owner: devteam
   revisions:
   - f81d4362b6c1
-  - ec0b5076173a
   - f773e98b26cf
+  - ec0b5076173a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_stats
   owner: iuc
   revisions:
-  - cd0874854f51
-  - 0dbb995c7d35
   - 56022eb50bbd
   - 9c620a950d3a
+  - cd0874854f51
+  - 0dbb995c7d35
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastp
   owner: iuc
   revisions:
+  - 1d8fe9bc4cb0
   - dbf9c561ef29
   - 65b93b623c77
-  - 1d8fe9bc4cb0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_combiner
@@ -110,15 +110,15 @@ tools:
 - name: fastq_groomer
   owner: devteam
   revisions:
-  - 47e5dbc3e790
   - 8611b80a14d6
+  - 47e5dbc3e790
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_manipulation
   owner: devteam
   revisions:
-  - 5b87038565bb
   - 7861f3b10c68
+  - 5b87038565bb
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_masker_by_quality
@@ -131,15 +131,15 @@ tools:
 - name: fastq_paired_end_deinterlacer
   owner: devteam
   revisions:
-  - 03d57fea6482
   - f3936d0632cb
+  - 03d57fea6482
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_interlacer
   owner: devteam
   revisions:
-  - 2ccb8dcabddc
   - 3e396e702cea
+  - 2ccb8dcabddc
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_joiner
@@ -152,8 +152,8 @@ tools:
 - name: fastq_paired_end_splitter
   owner: devteam
   revisions:
-  - e39cc71d3ed6
   - 35e38452bb3f
+  - e39cc71d3ed6
   - 249c8393f2d4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -168,8 +168,8 @@ tools:
 - name: fastq_stats
   owner: devteam
   revisions:
-  - b1cea1b2fcd0
   - f0e7deab6518
+  - b1cea1b2fcd0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer
@@ -189,9 +189,9 @@ tools:
   owner: devteam
   revisions:
   - d5e9e83cd3d8
-  - 567d5b3c52b1
   - 09070cacefd8
   - 529bccd5e4a1
+  - 567d5b3c52b1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_barcode_splitter
@@ -207,16 +207,16 @@ tools:
   revisions:
   - 90858c306551
   - cb1e251cac37
-  - bdf1ce174e39
   - 736b8f6ee456
+  - bdf1ce174e39
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_collapser
   owner: devteam
   revisions:
-  - 421f0af4ee95
-  - 7ce1891db6f5
   - 07497255281e
+  - 7ce1891db6f5
+  - 421f0af4ee95
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_renamer
@@ -240,10 +240,10 @@ tools:
 - name: fastx_trimmer
   owner: devteam
   revisions:
-  - 547e8d00f11c
-  - 61b4cedc8934
   - 73194cdd4f57
+  - 61b4cedc8934
   - 377ac2829eac
+  - 547e8d00f11c
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiadapterfilt
@@ -283,18 +283,18 @@ tools:
 - name: ucsc_fasplit
   owner: iuc
   revisions:
-  - bf04bd405d5b
   - 71f649c23021
+  - bf04bd405d5b
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_count
   owner: iuc
   revisions:
-  - 8250ea3a1501
   - b557acca0b56
-  - 24013bf85a6f
-  - e654095ab143
   - a535cf1e5da4
+  - 8250ea3a1501
+  - e654095ab143
+  - 24013bf85a6f
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_dedup
@@ -306,11 +306,11 @@ tools:
 - name: umi_tools_extract
   owner: iuc
   revisions:
-  - f3759eec3018
+  - 9fa7803d1c51
   - 828dba98cdb4
+  - f3759eec3018
   - 7accf7407811
-  - 27ac32a22ad2
-  - 9fa7803d1c51
   - 6a675c3aa610
+  - 27ac32a22ad2
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/fastq_quality_control.yml b/usegalaxy.org.au/fastq_quality_control.yml
index 5cfbb2fb2..bb6f138b4 100644
--- a/usegalaxy.org.au/fastq_quality_control.yml
+++ b/usegalaxy.org.au/fastq_quality_control.yml
@@ -2,44 +2,44 @@ tools:
 - name: fastq_quality_filter
   owner: devteam
   revisions:
-  - 64e9a6afdd0c
   - e41385662e5e
-  - 7b4468117008
+  - 64e9a6afdd0c
   - ce9cd02d5b88
+  - 7b4468117008
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer_by_quality
   owner: devteam
   revisions:
-  - c64d534a763c
   - 8050e091e99b
+  - c64d534a763c
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqc
   owner: devteam
   revisions:
-  - ff9530579d1f
   - 9da02be9c6cc
-  - e7b2202befea
-  - 3d0c7bdf12f5
-  - f2e8552cf1d0
+  - ff9530579d1f
   - 5ec9f6bceaee
+  - 3d0c7bdf12f5
   - 2b0c9d9fc6ca
+  - f2e8552cf1d0
+  - e7b2202befea
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqe
   owner: iuc
   revisions:
-  - 89d299153577
   - a252d8415583
+  - 89d299153577
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_nucleotides_distribution
   owner: devteam
   revisions:
   - b6b54ba71bd8
-  - ad116ae3f4d9
   - 18a51655db17
+  - ad116ae3f4d9
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_quality_statistics
@@ -53,30 +53,30 @@ tools:
 - name: filtlong
   owner: iuc
   revisions:
-  - a72af9de6bf5
   - 1f296803dfa3
   - 8880fb74ef56
+  - a72af9de6bf5
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: multiqc
   owner: iuc
   revisions:
-  - abfd8a6544d7
   - c1a4b5f3b432
-  - 9a913cdee30e
-  - 1c2db0054039
-  - b2f1f75d49c4
   - 5e33b465d8d5
-  - 75c93c70d094
-  - 3d93dd18d9f8
   - bf675f34b056
+  - 3d93dd18d9f8
+  - b2f1f75d49c4
+  - 1c2db0054039
+  - 9a913cdee30e
+  - 75c93c70d094
+  - abfd8a6544d7
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trim_galore
   owner: bgruening
   revisions:
-  - 084bbd8ba7b8
-  - 949f01671246
   - cd7e644cae1d
+  - 949f01671246
+  - 084bbd8ba7b8
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/filter_and_sort.yml b/usegalaxy.org.au/filter_and_sort.yml
index dd060751b..7e6d121cc 100644
--- a/usegalaxy.org.au/filter_and_sort.yml
+++ b/usegalaxy.org.au/filter_and_sort.yml
@@ -15,7 +15,7 @@ tools:
 - name: seq_filter_by_id
   owner: peterjc
   revisions:
-  - 141612f8c3e3
   - 83a19df00eab
+  - 141612f8c3e3
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/gemini_tools.yml b/usegalaxy.org.au/gemini_tools.yml
index d2805aee1..b17eb38f5 100644
--- a/usegalaxy.org.au/gemini_tools.yml
+++ b/usegalaxy.org.au/gemini_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: gemini_actionable_mutations
   owner: iuc
   revisions:
-  - 3630a6e624d4
   - 142d95ab942e
+  - 3630a6e624d4
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_amend
@@ -16,23 +16,23 @@ tools:
 - name: gemini_annotate
   owner: iuc
   revisions:
-  - f2f3bc622a16
   - 0c8f7322f8fc
+  - f2f3bc622a16
   - 8f53b238a360
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_burden
   owner: iuc
   revisions:
-  - df57188562f0
   - 1a4c5adcd587
+  - df57188562f0
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_comp_hets
   owner: iuc
   revisions:
-  - 7cf9bc210044
   - 62647e2637f6
+  - 7cf9bc210044
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_db_info
@@ -79,23 +79,23 @@ tools:
 - name: gemini_interactions
   owner: iuc
   revisions:
-  - 2550239feed5
   - 184aa4e686e2
+  - 2550239feed5
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_load
   owner: iuc
   revisions:
+  - b2c25142267e
   - cf61daf064fe
   - 45296e47d565
-  - b2c25142267e
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_lof_sieve
   owner: iuc
   revisions:
-  - 2969a1f43b7d
   - 90021fffff70
+  - 2969a1f43b7d
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_mendel_errors
@@ -108,37 +108,37 @@ tools:
 - name: gemini_pathways
   owner: iuc
   revisions:
-  - 9199331c3421
   - 6b09debcfc49
+  - 9199331c3421
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_qc
   owner: iuc
   revisions:
-  - 86e46972e183
   - 9e83673fa6d2
+  - 86e46972e183
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_query
   owner: iuc
   revisions:
-  - 666f60a9331a
   - 840fb4850be3
   - da74170c55c7
+  - 666f60a9331a
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_recessive_and_dominant
   owner: iuc
   revisions:
-  - 86f3aac4418d
   - 05124dc72dba
+  - 86f3aac4418d
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_region
   owner: iuc
   revisions:
-  - 601b70d10d92
   - 33efe43c1dbb
+  - 601b70d10d92
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_roh
@@ -151,15 +151,15 @@ tools:
 - name: gemini_set_somatic
   owner: iuc
   revisions:
-  - ef9991a4a9a7
   - e4e2128460e3
+  - ef9991a4a9a7
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_stats
   owner: iuc
   revisions:
-  - 5c9efee9cb1e
   - ee894347fcd6
+  - 5c9efee9cb1e
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_windower
diff --git a/usegalaxy.org.au/genome_editing.yml b/usegalaxy.org.au/genome_editing.yml
index 2b81e95ea..2a6e45eeb 100644
--- a/usegalaxy.org.au/genome_editing.yml
+++ b/usegalaxy.org.au/genome_editing.yml
@@ -2,29 +2,29 @@ tools:
 - name: mageck_count
   owner: iuc
   revisions:
-  - e329d44424d7
   - 3edbd1ff5602
+  - e329d44424d7
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_gsea
   owner: iuc
   revisions:
-  - d46e36492bff
   - b946929d31c4
+  - d46e36492bff
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_mle
   owner: iuc
   revisions:
-  - 26126538a86f
   - b36c85e37a48
+  - 26126538a86f
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_pathway
   owner: iuc
   revisions:
-  - 9744e1124d0f
   - 39a996d44e16
+  - 9744e1124d0f
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_test
diff --git a/usegalaxy.org.au/get_data.yml b/usegalaxy.org.au/get_data.yml
index 07f79e113..ccae14cd6 100644
--- a/usegalaxy.org.au/get_data.yml
+++ b/usegalaxy.org.au/get_data.yml
@@ -2,48 +2,48 @@ tools:
 - name: dbbuilder
   owner: galaxyp
   revisions:
-  - 983bf725dfc2
-  - e9df53a75f3c
   - b39347891609
   - c1b437242fee
+  - e9df53a75f3c
+  - 983bf725dfc2
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_acc_download
   owner: iuc
   revisions:
-  - 28587613264f
   - e063168e0a81
+  - 28587613264f
   - 1c58de56d587
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sra_tools
   owner: iuc
   revisions:
-  - 6ea73833cf67
-  - 4317d3cb6cba
   - 7068f48d0ef9
-  - e407b9da183a
+  - 6ea73833cf67
+  - 6591f049cf7e
   - 4df8de2d0e48
+  - 653e89d73fc4
+  - 734abc7ac21d
+  - 9a776b080193
   - aad3885b3216
-  - 5e6237d58b0c
-  - 6591f049cf7e
-  - 1790dcf3c32d
+  - e407b9da183a
+  - c441583adae5
+  - 4317d3cb6cba
   - f5ea3ce9b9b0
-  - 653e89d73fc4
+  - 1790dcf3c32d
   - e08a7ad4378b
+  - 5e6237d58b0c
   - 69ebb7f46e45
-  - 734abc7ac21d
-  - 9a776b080193
   - 83c7d564b128
-  - c441583adae5
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unipept
   owner: galaxyp
   revisions:
+  - 75b3b3d0adbf
   - 34758ab8aaa4
   - 9aaa46d45472
-  - 75b3b3d0adbf
   - 7863f1abcdda
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/graphdisplay_data.yml b/usegalaxy.org.au/graphdisplay_data.yml
index 704d96acf..c8710f502 100644
--- a/usegalaxy.org.au/graphdisplay_data.yml
+++ b/usegalaxy.org.au/graphdisplay_data.yml
@@ -2,15 +2,15 @@ tools:
 - name: circos
   owner: iuc
   revisions:
-  - fd59d783248a
-  - 740057a5126d
-  - c4bde687c846
-  - 290a11559985
-  - ae9994cf526f
+  - a64dc31ab7f2
   - 4b519282a05b
   - df7356989ac1
-  - a64dc31ab7f2
+  - 290a11559985
   - 7f13dc906cb9
+  - fd59d783248a
+  - ae9994cf526f
+  - c4bde687c846
+  - 740057a5126d
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: draw_stacked_barplots
@@ -28,9 +28,9 @@ tools:
 - name: fastq_quality_boxplot
   owner: devteam
   revisions:
+  - f95284aa2946
   - 867ab348287d
   - 7cf5b1d072b5
-  - f95284aa2946
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: geneiobio
@@ -43,8 +43,8 @@ tools:
   owner: iuc
   revisions:
   - 3b37b1b1c3a7
-  - ca7cb0eaad62
   - 53460afd5115
+  - ca7cb0eaad62
   - '566197475670'
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -52,21 +52,21 @@ tools:
   owner: iuc
   revisions:
   - da4c086cff5b
-  - 3d059e9c2fba
   - 391a4cc45fea
-  - 10515715c940
   - d3a9e32672ec
+  - 3d059e9c2fba
+  - 10515715c940
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_point
   owner: iuc
   revisions:
-  - 1acf88921176
-  - d0fc8b746d57
+  - 3b12bf9b4b87
   - e3a675da7fd0
+  - 1acf88921176
   - 5fe1dc76176e
-  - 3b12bf9b4b87
   - 299307abd804
+  - d0fc8b746d57
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmaj
@@ -85,8 +85,8 @@ tools:
 - name: graphlan
   owner: iuc
   revisions:
-  - 8f62f666dcb6
   - a490b70e46fc
+  - 8f62f666dcb6
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: histogram
@@ -98,17 +98,17 @@ tools:
 - name: jbrowse
   owner: iuc
   revisions:
-  - 4542035c1075
-  - a6e57ff585c0
-  - 667e17248bfe
+  - 1cfc579079a6
+  - fd5dbf0f732e
   - 6cd09d7b5f37
-  - 112eb40ba6cf
-  - 2bb2e07a7a21
-  - 836d1aa3e89a
+  - 667e17248bfe
   - ca2def38369c
-  - fd5dbf0f732e
+  - 836d1aa3e89a
+  - 4542035c1075
+  - 2bb2e07a7a21
   - 17359b808b01
-  - 1cfc579079a6
+  - 112eb40ba6cf
+  - a6e57ff585c0
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krona_text
@@ -127,8 +127,8 @@ tools:
   owner: iuc
   revisions:
   - f1691de443a7
-  - 03c13085aecc
   - fe154a7af404
+  - 03c13085aecc
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pe_histogram
@@ -147,8 +147,8 @@ tools:
 - name: plotly_parallel_coordinates_plot
   owner: bgruening
   revisions:
-  - 9958188c6195
   - 7b21a9b5922f
+  - 9958188c6195
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_regression_performance_plots
@@ -160,8 +160,8 @@ tools:
 - name: pretext_snapshot
   owner: iuc
   revisions:
-  - 7c9417381ad5
   - 44c66e8d21e6
+  - 7c9417381ad5
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: prop_venn
@@ -173,22 +173,22 @@ tools:
 - name: pygenometracks
   owner: iuc
   revisions:
-  - a1abfa420d9d
+  - 2824d77cd8f8
   - 14e7c35f3d00
-  - 4ac4e7083b7e
-  - 7dd841a32245
+  - 360df4999907
   - 59fd173ac850
+  - 7dd841a32245
+  - a1abfa420d9d
+  - 4ac4e7083b7e
   - 326a3db8d9d1
-  - 2824d77cd8f8
-  - 360df4999907
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: volcanoplot
   owner: iuc
   revisions:
   - 73b8cb5bddcd
-  - 44608d0193ed
   - 83c573f2e73c
+  - 44608d0193ed
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: weblogo3
diff --git a/usegalaxy.org.au/hca_single_cell.yml b/usegalaxy.org.au/hca_single_cell.yml
index 565534d9b..93ae5e47c 100644
--- a/usegalaxy.org.au/hca_single_cell.yml
+++ b/usegalaxy.org.au/hca_single_cell.yml
@@ -8,8 +8,8 @@ tools:
 - name: gtf2gene_list
   owner: ebi-gxa
   revisions:
-  - 14b3f2a4523b
   - 1a642de6db01
+  - 14b3f2a4523b
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: retrieve_scxa
@@ -21,8 +21,8 @@ tools:
 - name: salmon_kallisto_mtx_to_10x
   owner: ebi-gxa
   revisions:
-  - 88f5a0a6a818
   - e42c217a450f
+  - 88f5a0a6a818
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_compute_graph
diff --git a/usegalaxy.org.au/hicexplorer.yml b/usegalaxy.org.au/hicexplorer.yml
index 1873a5cbf..c96beae6d 100644
--- a/usegalaxy.org.au/hicexplorer.yml
+++ b/usegalaxy.org.au/hicexplorer.yml
@@ -2,10 +2,10 @@ tools:
 - name: hicexplorer_hicbuildmatrix
   owner: bgruening
   revisions:
-  - ed2cca6b5de4
-  - 9edf8894a22d
   - 921a2da49a0c
   - 29f66c353bcb
+  - ed2cca6b5de4
+  - 9edf8894a22d
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicfindtads
@@ -13,17 +13,17 @@ tools:
   revisions:
   - 78fb5e286609
   - ec4b948dc6f0
-  - d404277cc87a
   - 5746d61f0a91
+  - d404277cc87a
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergematrixbins
   owner: bgruening
   revisions:
   - 4d511437b1e5
+  - 9e357a8b2ec3
   - 03dd3c16ae4e
   - 977dc15add20
-  - 9e357a8b2ec3
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicpca
@@ -31,16 +31,16 @@ tools:
   revisions:
   - 77919cc3618e
   - 3b5b54ed6392
-  - 0ba4f56a3613
   - 41dbf4d162a2
+  - 0ba4f56a3613
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotmatrix
   owner: bgruening
   revisions:
+  - 7babd8a46fe0
+  - b63363075c2e
   - 5308ca68ef3d
   - 9939786dd9c9
-  - b63363075c2e
-  - 7babd8a46fe0
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/imaging.yml b/usegalaxy.org.au/imaging.yml
index fec13577d..8f1a4492e 100644
--- a/usegalaxy.org.au/imaging.yml
+++ b/usegalaxy.org.au/imaging.yml
@@ -2,8 +2,8 @@ tools:
 - name: 2d_auto_threshold
   owner: imgteam
   revisions:
-  - 81f0cbca04a7
   - 0c777d708acc
+  - 81f0cbca04a7
   - 3df9f0a4bf34
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -24,15 +24,15 @@ tools:
 - name: 2d_histogram_equalization
   owner: imgteam
   revisions:
-  - 77f7159d775a
   - 70316d792fc9
+  - 77f7159d775a
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_simple_filter
   owner: imgteam
   revisions:
-  - f70b215d155c
   - dba87c4b32d3
+  - f70b215d155c
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bfconvert
@@ -40,46 +40,46 @@ tools:
   revisions:
   - b07f4839ca77
   - f3360fbeda64
-  - 10eed33aa9b2
   - 85edbb7a436b
+  - 10eed33aa9b2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: binary2labelimage
   owner: imgteam
   revisions:
-  - 6e65fd971e13
   - 984358e43242
+  - 6e65fd971e13
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: count_objects
   owner: imgteam
   revisions:
-  - 664232d2a3f7
-  - b58447a2eed2
   - 5bf8eb50b280
+  - b58447a2eed2
+  - 664232d2a3f7
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_cellprofiler
   owner: bgruening
   revisions:
   - 0e4dccaafef5
-  - e917a2424690
   - eb6c08714244
+  - e917a2424690
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_color_to_gray
   owner: bgruening
   revisions:
-  - e8f822eeb9fd
   - bad171ed1e96
+  - e8f822eeb9fd
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_common
   owner: bgruening
   revisions:
-  - e7273daa5ae2
   - 670975e92458
   - 6070780813d9
+  - e7273daa5ae2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_convert_objects_to_image
@@ -94,56 +94,56 @@ tools:
   owner: bgruening
   revisions:
   - 6a7da2e5f696
-  - 5d28ac336861
   - 2484086dee41
+  - 5d28ac336861
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_enhance_or_suppress_features
   owner: bgruening
   revisions:
-  - bace5a93a97c
-  - f2ed92b011a9
   - 11f177b1a59e
+  - f2ed92b011a9
+  - bace5a93a97c
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_export_to_spreadsheet
   owner: bgruening
   revisions:
+  - f8fa0f6718a3
   - f24c370e5ea4
   - d0178bdcd00e
-  - f8fa0f6718a3
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_gray_to_color
   owner: bgruening
   revisions:
-  - ad271f78a87a
   - 3245681b2f6d
+  - ad271f78a87a
   - 31d195bedf6d
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_identify_primary_objects
   owner: bgruening
   revisions:
-  - 993faa34333b
   - 87d4d92d7487
   - b6eec6087271
+  - 993faa34333b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_image_math
   owner: bgruening
   revisions:
-  - 6100a22bf4f2
   - ff1a86a87364
+  - 6100a22bf4f2
   - c09dcda1143f
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_mask_image
   owner: bgruening
   revisions:
-  - 3a05117669cf
-  - 667a513e67e4
   - b178453ea8d1
+  - 667a513e67e4
+  - 3a05117669cf
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_granularity
@@ -157,33 +157,33 @@ tools:
 - name: cp_measure_image_area_occupied
   owner: bgruening
   revisions:
-  - 20dbb1f7ec7b
   - 91e03287f285
+  - 20dbb1f7ec7b
   - a32c3f810ade
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_intensity
   owner: bgruening
   revisions:
-  - b64af54c5c09
-  - 5499dc6f8ac1
   - 8536b1ae0254
+  - 5499dc6f8ac1
+  - b64af54c5c09
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_quality
   owner: bgruening
   revisions:
+  - 6f4715b8540a
   - e972e07c7845
   - d3890df07463
-  - 6f4715b8540a
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_intensity
   owner: bgruening
   revisions:
-  - 407925835dd9
   - 980aed9e8fd5
   - e52c75a28c4b
+  - 407925835dd9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_size_shape
@@ -197,9 +197,9 @@ tools:
 - name: cp_measure_texture
   owner: bgruening
   revisions:
+  - 035a58c7f54a
   - 80b200ae516b
   - b76841ee5560
-  - 035a58c7f54a
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_overlay_outlines
@@ -212,8 +212,8 @@ tools:
 - name: cp_relate_objects
   owner: bgruening
   revisions:
-  - 48102a685037
   - 3a3033222f61
+  - 48102a685037
   - 8083a87d2fdf
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -234,14 +234,14 @@ tools:
 - name: cp_track_objects
   owner: bgruening
   revisions:
-  - 972d2c365739
   - 1fd453cd757b
+  - 972d2c365739
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: image_info
   owner: imgteam
   revisions:
-  - 7b6d9412c7f8
   - 236ec78b2e53
+  - 7b6d9412c7f8
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/ivar.yml b/usegalaxy.org.au/ivar.yml
index 45de865f7..599a74cb9 100644
--- a/usegalaxy.org.au/ivar.yml
+++ b/usegalaxy.org.au/ivar.yml
@@ -2,88 +2,88 @@ tools:
 - name: ivar_consensus
   owner: iuc
   revisions:
-  - e319b5b65879
-  - 17f911830a8c
-  - 78bbd17d0703
+  - 3e4f434a69c6
   - 1069f6db0a0e
-  - f362150bef41
+  - a38934e303b9
+  - 17f911830a8c
   - e4ee04da1c19
+  - 78bbd17d0703
   - d6e72da3ec35
-  - 3e4f434a69c6
-  - a38934e303b9
+  - e319b5b65879
+  - f362150bef41
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_filtervariants
   owner: iuc
   revisions:
+  - 7fe36019c073
   - f91cfb73d369
-  - 2b95d5c04908
+  - 8f8df367470d
+  - 9537184d421f
+  - 72ddd32392cd
   - 0135f1d487a0
-  - 1ef5b6e3e09d
+  - 2b95d5c04908
   - c88553ec696e
-  - 72ddd32392cd
-  - 9537184d421f
-  - 7fe36019c073
-  - 8f8df367470d
+  - 1ef5b6e3e09d
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_getmasked
   owner: iuc
   revisions:
-  - ad0dc9f4c9e2
-  - fafb3d685fa9
   - d7e79eb3bcb3
   - 2cf4a1cafc16
+  - fafb3d685fa9
+  - ad0dc9f4c9e2
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_removereads
   owner: iuc
   revisions:
-  - 28a6f1908fcc
-  - 6a1515bb0687
-  - 8c05afb547fa
+  - 69797fa273c3
   - 3d18f8c3c0f6
-  - 7f1cfa4c0e32
-  - bd2a7d1316b9
+  - ee29337f905c
+  - 6a1515bb0687
+  - 28a6f1908fcc
   - 9eaadf03e0df
+  - 8c05afb547fa
   - ee2beb764a7b
+  - 7f1cfa4c0e32
   - 8d36959b000d
-  - ee29337f905c
-  - 94df24c6bc00
+  - bd2a7d1316b9
   - 43aac8d29685
-  - 69797fa273c3
+  - 94df24c6bc00
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_trim
   owner: iuc
   revisions:
-  - bcaa0d571ce2
+  - 9f978da6528a
+  - 8858fa037a15
+  - c092052ed673
+  - 364f4ffec275
+  - db536ad45f28
+  - cb903c9dc33d
   - 0893a1dbb807
   - e3bb03cf207a
   - 5671e1d3d5ee
-  - c092052ed673
   - 5d6ed46cc101
-  - cb903c9dc33d
-  - db536ad45f28
   - d37ede8589b2
-  - 364f4ffec275
-  - 8858fa037a15
-  - 9f978da6528a
+  - bcaa0d571ce2
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_variants
   owner: iuc
   revisions:
-  - c5c9f02b6167
+  - 12d66d0d05ac
   - e1a015876aa9
-  - 584beffa972b
-  - 3b6a16d82c1b
   - 49236b03e4fd
   - ed28dd32141c
-  - 045d6d00f606
-  - f95f403841ad
-  - 38b91a3190cd
+  - c5c9f02b6167
   - 230b05597996
-  - 12d66d0d05ac
+  - 38b91a3190cd
+  - f95f403841ad
+  - 584beffa972b
+  - 3b6a16d82c1b
+  - 045d6d00f606
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/join_subtract_and_group.yml b/usegalaxy.org.au/join_subtract_and_group.yml
index 23e32c176..0c1b705f9 100644
--- a/usegalaxy.org.au/join_subtract_and_group.yml
+++ b/usegalaxy.org.au/join_subtract_and_group.yml
@@ -2,19 +2,19 @@ tools:
 - name: datamash_reverse
   owner: iuc
   revisions:
-  - 17e3b698dd52
-  - b8a457820315
   - 0f1724dd59d2
+  - 17e3b698dd52
   - f198773344e4
+  - b8a457820315
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: datamash_transpose
   owner: iuc
   revisions:
+  - 374cb875d38a
   - ba0c40780ecf
-  - a513e3fbb4c5
   - ac092723240d
   - 22c2a1ac7ae3
-  - 374cb875d38a
+  - a513e3fbb4c5
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/machine_learning.yml b/usegalaxy.org.au/machine_learning.yml
index ceec2f8ef..3e9dbf450 100644
--- a/usegalaxy.org.au/machine_learning.yml
+++ b/usegalaxy.org.au/machine_learning.yml
@@ -10,83 +10,83 @@ tools:
 - name: keras_model_config
   owner: bgruening
   revisions:
-  - 8a794e6d3388
   - 4d81e3e2fb63
+  - 8a794e6d3388
   - f22a9297440f
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_train_and_eval
   owner: bgruening
   revisions:
-  - e1317b5502fa
   - 818f9b69d8a0
   - 2af1346e68c9
-  - b6ef6d0cb6b7
   - f1b9a42d6809
+  - e1317b5502fa
+  - b6ef6d0cb6b7
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ml_visualization_ex
   owner: bgruening
   revisions:
   - 1588f9076e32
+  - 05143043ca13
   - c80db5d6fd8c
   - 947c2eacccb8
-  - 05143043ca13
   - 8334dc98c48e
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: model_prediction
   owner: bgruening
   revisions:
+  - 29e4122c90de
   - 9991c4ddde14
   - 1552b8cb4a94
   - 25b46af53232
   - 83228baae3c5
-  - 29e4122c90de
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_ensemble
   owner: bgruening
   revisions:
-  - 841a6cc5fc58
-  - a07ab242b0b5
-  - 060ca94ac049
-  - 1a53edc4b438
   - f3dfa4bdf87e
+  - 1a53edc4b438
   - 53616c8b0865
+  - 060ca94ac049
+  - a07ab242b0b5
+  - 841a6cc5fc58
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_generalized_linear
   owner: bgruening
   revisions:
+  - dc4b5fd604a6
+  - 2fc89dcd41c8
   - d4808d5b83da
   - 40f4447733b2
-  - dc4b5fd604a6
   - 91c4e3331208
-  - 2fc89dcd41c8
   - 927586a18553
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_searchcv
   owner: bgruening
   revisions:
+  - c6ae57f774c6
+  - 7626ea9c2e1b
   - e5a5ad882f1f
   - 25ab6b4e376e
-  - 7626ea9c2e1b
-  - c6ae57f774c6
-  - 301e07345c93
   - 36e8d6d5d01b
+  - 301e07345c93
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_svm_classifier
   owner: bgruening
   revisions:
-  - b7c3e9a3b954
-  - 02d2be90dedb
   - 80852884053f
   - 0630258dcf35
-  - f9639b488779
   - 4ed102b922cb
+  - f9639b488779
+  - b7c3e9a3b954
+  - 02d2be90dedb
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_to_categorical
diff --git a/usegalaxy.org.au/mapping.yml b/usegalaxy.org.au/mapping.yml
index 3d03c296a..10d7829d4 100644
--- a/usegalaxy.org.au/mapping.yml
+++ b/usegalaxy.org.au/mapping.yml
@@ -2,15 +2,15 @@ tools:
 - name: bowtie2
   owner: devteam
   revisions:
-  - 17062a0decb7
-  - 017aba02828d
-  - 3ba8d4563129
-  - cd659e8cc5fa
   - f6877ad76b00
+  - 17062a0decb7
   - 03e9b2fbc005
   - 749c918495f7
-  - a6d65b0c67af
+  - 017aba02828d
   - 937aa69e715f
+  - cd659e8cc5fa
+  - 3ba8d4563129
+  - a6d65b0c67af
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bowtie_wrappers
@@ -22,8 +22,8 @@ tools:
 - name: bwa_mem2
   owner: iuc
   revisions:
-  - bfaa0d22c2e4
   - b4a22d90cce9
+  - bfaa0d22c2e4
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bwa
@@ -32,8 +32,8 @@ tools:
   - e188dc7a68e6
   - 3fe632431b68
   - dfd8b7f78c37
-  - 64f11cf59c6e
   - 53646aaaafef
+  - 64f11cf59c6e
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lastz_paired_reads
@@ -45,43 +45,43 @@ tools:
 - name: lastz
   owner: devteam
   revisions:
-  - 60afcc2c1d05
   - 37b497aa133f
-  - 2ff111fac1d7
   - e7f19d6a9af8
+  - 60afcc2c1d05
   - 3e1ea2facca6
+  - 2ff111fac1d7
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minimap2
   owner: iuc
   revisions:
-  - 037c6e54df11
+  - 53c0b7a1a0c3
+  - 09b53c1d4ab1
+  - c0c2d0941de8
   - b3eab4b67562
   - 3f4d6399997b
-  - f54f5baedfdd
-  - c0c2d0941de8
-  - be1d967337e4
+  - 037c6e54df11
   - 11a0d50a54e6
-  - 09b53c1d4ab1
+  - be1d967337e4
   - 8c6cd2650d1f
-  - 77b2770508f6
   - 6b1e195506a3
-  - 53c0b7a1a0c3
+  - f54f5baedfdd
+  - 77b2770508f6
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rna_starsolo
   owner: iuc
   revisions:
-  - 5ef7ec16b04f
   - b8f5f6e87f5c
-  - 1cd2511a396e
-  - 00fbfac99d39
+  - 13022c3d3076
+  - 9ee34ba73ebf
   - e403d27e8f24
-  - 79b885ce78d7
   - ec9cbd6b9a49
+  - 00fbfac99d39
+  - 79b885ce78d7
   - 178bdbdb6d24
-  - 13022c3d3076
-  - 9ee34ba73ebf
+  - 1cd2511a396e
+  - 5ef7ec16b04f
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: star_fusion
diff --git a/usegalaxy.org.au/metagenomic_analysis.yml b/usegalaxy.org.au/metagenomic_analysis.yml
index 5e61a68a7..363595551 100644
--- a/usegalaxy.org.au/metagenomic_analysis.yml
+++ b/usegalaxy.org.au/metagenomic_analysis.yml
@@ -22,91 +22,91 @@ tools:
 - name: dada2_assigntaxonomyaddspecies
   owner: iuc
   revisions:
-  - 76d3d2b10738
   - 7c2100246a2f
-  - 63f86089423e
   - 5b5a7af9fbb4
+  - 63f86089423e
+  - 76d3d2b10738
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_dada
   owner: iuc
   revisions:
   - 96336c6a2bb7
+  - 1c35dadbe76f
   - 84fd33a60b35
   - 18a502a9d287
-  - 1c35dadbe76f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_filterandtrim
   owner: iuc
   revisions:
   - 34e55239e68b
+  - f732237754fc
   - a9f4a217dcd6
   - addaf9d22850
-  - f732237754fc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_learnerrors
   owner: iuc
   revisions:
-  - 75403243703a
   - 04c15826a0b8
-  - 0776d824d896
   - 8c202e741d68
+  - 0776d824d896
+  - 75403243703a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_makesequencetable
   owner: iuc
   revisions:
-  - 43c99742158b
   - 8470de786d47
-  - 1c9b3bcd4261
+  - 43c99742158b
   - e96bbb9e24ea
+  - 1c9b3bcd4261
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_mergepairs
   owner: iuc
   revisions:
-  - 5c865a382933
   - 84743da21318
   - 306a40d4bb8f
+  - 5c865a382933
   - 1d75bd0595e2
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotcomplexity
   owner: iuc
   revisions:
-  - 8daf4564ccda
-  - ac72310b038a
   - 555ccac8a4c5
+  - 8daf4564ccda
   - 78faebd0879c
+  - ac72310b038a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotqualityprofile
   owner: iuc
   revisions:
-  - a58e4a43f49c
   - 7b8cb2b02978
   - f947b4bb5107
   - d60df8727f59
+  - a58e4a43f49c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_removebimeradenovo
   owner: iuc
   revisions:
-  - 04144473e59e
   - 7136e9ab70db
-  - 1bc3657cd694
   - 7f3b59dee073
+  - 04144473e59e
+  - 1bc3657cd694
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_seqcounts
   owner: iuc
   revisions:
-  - 0a1224c4b781
-  - 19299bb1c6af
   - d943081510da
+  - 19299bb1c6af
   - 9058d8943303
+  - 0a1224c4b781
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasttree
@@ -119,24 +119,24 @@ tools:
 - name: gtdbtk_classify_wf
   owner: iuc
   revisions:
-  - 6501b5b33988
-  - c4db8c4de66f
   - dbf1798c0dcc
+  - c4db8c4de66f
+  - 6501b5b33988
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiasm_meta
   owner: galaxy-australia
   revisions:
-  - fa35f1106d3e
   - 15dbb444df71
+  - fa35f1106d3e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_genefamilies_genus_level
   owner: iuc
   revisions:
-  - 654548ae1357
-  - 6d364c65c946
   - 6c84982ee6f7
+  - 6d364c65c946
+  - 654548ae1357
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_join_tables
@@ -149,23 +149,23 @@ tools:
   owner: iuc
   revisions:
   - e66ab198ec15
-  - 6aad8ca3918b
   - bd7a9c6efb10
+  - 6aad8ca3918b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_renorm_table
   owner: iuc
   revisions:
+  - d77397f09da1
   - c6676a890f50
   - b084117133af
-  - d77397f09da1
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_unpack_pathways
   owner: iuc
   revisions:
-  - 9704f1a3b32d
   - 7f208f1eb64f
+  - 9704f1a3b32d
   - cad93abecac9
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -178,59 +178,59 @@ tools:
 - name: humann_regroup_table
   owner: iuc
   revisions:
-  - 31c6d107e7a5
   - 79706f10d680
-  - c409a495841f
   - e88b731dad59
+  - c409a495841f
+  - 31c6d107e7a5
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rename_table
   owner: iuc
   revisions:
-  - d24841f5c3d2
-  - 094ad9c068af
-  - 172920f67a84
   - 714d5a28cc5c
+  - 172920f67a84
   - 71ea608ddfa3
+  - d24841f5c3d2
+  - 094ad9c068af
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_renorm_table
   owner: iuc
   revisions:
-  - 4137b492233e
   - a4d7148ccee4
+  - 12fb63b5f63f
+  - 4137b492233e
   - d7e9a3c41657
   - a293a742194f
-  - 12fb63b5f63f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_split_stratified_table
   owner: iuc
   revisions:
-  - 6fcb8ac37a3e
-  - 97f7bb0851e7
   - e2c71b852aba
-  - 64bc7acc22a9
   - cf87759761eb
+  - 97f7bb0851e7
+  - 6fcb8ac37a3e
+  - 64bc7acc22a9
   - 75bedfb2078b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_unpack_pathways
   owner: iuc
   revisions:
-  - 2d35528d2141
   - 5e5a999ffaa9
-  - 080ea153677c
   - c82508e76ad1
   - 4033827c76b8
+  - 2d35528d2141
+  - 080ea153677c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann
   owner: iuc
   revisions:
+  - 95bf7479d53c
   - 6b7622dda516
   - 2cd76b089570
-  - 95bf7479d53c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jellyfish
@@ -290,16 +290,16 @@ tools:
 - name: kraken2
   owner: iuc
   revisions:
-  - 4a9da2b6c2e3
   - e674066930b2
   - 328c607150ff
+  - 4a9da2b6c2e3
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken2tax
   owner: devteam
   revisions:
-  - f03c7ba8d8bc
   - 50bd98b3ae5a
+  - f03c7ba8d8bc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_biom
@@ -311,8 +311,8 @@ tools:
 - name: kraken_filter
   owner: devteam
   revisions:
-  - 5bee9adae474
   - 3d6570bffdb1
+  - 5bee9adae474
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_report
@@ -331,8 +331,8 @@ tools:
 - name: kraken
   owner: devteam
   revisions:
-  - 8ba2174315aa
   - aec58624706f
+  - 8ba2174315aa
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krakentools_extract_kraken_reads
@@ -344,8 +344,8 @@ tools:
 - name: krakentools_kreport2krona
   owner: iuc
   revisions:
-  - 88d274322340
   - 2deaada69b14
+  - 88d274322340
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mash_sketch
@@ -369,18 +369,18 @@ tools:
 - name: merge_metaphlan_tables
   owner: iuc
   revisions:
+  - 0270541aaf46
   - 27250f92a01a
   - e073891b2afc
   - 4fd3b5d8706b
   - 2cff76cf35c6
-  - 0270541aaf46
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metabat2
   owner: iuc
   revisions:
-  - 708abf08a626
   - 76bc4efa1aeb
+  - 708abf08a626
   - eb50e7eca3dc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -454,13 +454,13 @@ tools:
 - name: metaphlan
   owner: iuc
   revisions:
-  - b89b0765695d
-  - a16313517e55
+  - 2131d7dca455
   - ff8f55893e7d
   - 1a6cdf55390f
-  - a92a632c4d9b
-  - 2131d7dca455
   - 6dee4abadccb
+  - a16313517e55
+  - b89b0765695d
+  - a92a632c4d9b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metawrapmg_binning
@@ -532,8 +532,8 @@ tools:
 - name: picrust_compare_biom
   owner: iuc
   revisions:
-  - 0ba7dfaa941d
   - 9168545e09df
+  - 0ba7dfaa941d
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_format_tree_and_trait_table
@@ -570,12 +570,12 @@ tools:
 - name: staramr
   owner: nml
   revisions:
-  - 141afacabcfa
-  - aeaa20b96ef2
-  - 2fd4d4c9c5c2
-  - 4b9a8031ab74
   - be818ae858e4
+  - 4b9a8031ab74
+  - 141afacabcfa
   - 3b22de20bd4b
+  - 2fd4d4c9c5c2
+  - aeaa20b96ef2
   - 4d83eccf5f81
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -583,7 +583,7 @@ tools:
   owner: iuc
   revisions:
   - 9495df9dd6ef
-  - b3c7199d8786
   - 576963db5f1b
+  - b3c7199d8786
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/mothur.yml b/usegalaxy.org.au/mothur.yml
index 3a4bc2787..133b1eb2d 100644
--- a/usegalaxy.org.au/mothur.yml
+++ b/usegalaxy.org.au/mothur.yml
@@ -80,8 +80,8 @@ tools:
 - name: mothur_chimera_vsearch
   owner: iuc
   revisions:
-  - 12e856482d26
   - de3cfb122105
+  - 12e856482d26
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_chop_seqs
@@ -732,8 +732,8 @@ tools:
 - name: mothur_summary_single
   owner: iuc
   revisions:
-  - 72be09dfd803
   - 2344ed181ae6
+  - 72be09dfd803
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_tax
diff --git a/usegalaxy.org.au/multiple_alignments.yml b/usegalaxy.org.au/multiple_alignments.yml
index 0a5fb4ad3..1eb3e7e51 100644
--- a/usegalaxy.org.au/multiple_alignments.yml
+++ b/usegalaxy.org.au/multiple_alignments.yml
@@ -2,37 +2,37 @@ tools:
 - name: cactus_cactus
   owner: galaxy-australia
   revisions:
-  - 2263989660f5
+  - cd07731e4434
+  - 9eeb13a92d79
   - bdfbaf0c10aa
-  - 6ae5a7b5a0a2
+  - 80f03df2e2ce
   - a74dbfee5a86
-  - 9eeb13a92d79
-  - cd07731e4434
-  - 94b8c6013083
   - 48c13389050d
   - 8b67dd48fec1
+  - 94b8c6013083
   - 9baa871cb1d1
-  - 80f03df2e2ce
   - 9422c5a87ee2
+  - 2263989660f5
+  - 6ae5a7b5a0a2
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cactus_export
   owner: galaxy-australia
   revisions:
-  - f0af8936ed41
-  - 2e093badc689
-  - fc2e49f91e52
+  - aaa0d6a8b808
+  - 5abf2c2249aa
+  - 3ff17bad4006
+  - 4a60927aaca5
   - c18157c68134
-  - f14193ec1f50
-  - '764845535798'
-  - d390fe1567dc
+  - f0af8936ed41
   - d7ce0ec78e51
   - bc3831dd65c1
-  - 5abf2c2249aa
+  - fc2e49f91e52
+  - d390fe1567dc
   - be78f13134e2
-  - 4a60927aaca5
-  - 3ff17bad4006
-  - aaa0d6a8b808
+  - f14193ec1f50
+  - '764845535798'
+  - 2e093badc689
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cdhit
@@ -64,19 +64,19 @@ tools:
 - name: mafft
   owner: rnateam
   revisions:
-  - f1a5908ea2cb
-  - c5908940967d
-  - 15974dd17515
   - 6f28e90db932
+  - 15974dd17515
+  - f1a5908ea2cb
   - a65296ffb4a0
   - f0d493f8f84f
+  - c5908940967d
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_delta_filter
   owner: iuc
   revisions:
-  - b3acbb3a6af0
   - fbca557a4847
+  - b3acbb3a6af0
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_dnadiff
@@ -89,8 +89,8 @@ tools:
 - name: mummer_mummer
   owner: iuc
   revisions:
-  - bcd65de9725b
   - 48823c9635a4
+  - bcd65de9725b
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummerplot
@@ -103,14 +103,14 @@ tools:
 - name: mummer_nucmer
   owner: iuc
   revisions:
-  - e18267f90096
   - 636b049e6141
+  - e18267f90096
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_show_coords
   owner: iuc
   revisions:
-  - b4124df98b26
   - 959c1f8dae95
+  - b4124df98b26
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/nanopore.yml b/usegalaxy.org.au/nanopore.yml
index ba3d02476..87e63120d 100644
--- a/usegalaxy.org.au/nanopore.yml
+++ b/usegalaxy.org.au/nanopore.yml
@@ -2,42 +2,42 @@ tools:
 - name: medaka_consensus_pipeline
   owner: iuc
   revisions:
-  - 0e9e7fcdd543
-  - fc8804320156
   - cb34f00cc10f
-  - a7228a7ea146
-  - 72b5e9dda577
+  - fc8804320156
   - 79e9a869f40e
+  - 0e9e7fcdd543
+  - 72b5e9dda577
+  - a7228a7ea146
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_consensus
   owner: iuc
   revisions:
+  - 18505fe2bdb1
   - db25ec99c3ea
-  - fa11aa8103b2
   - d6cddc06aeae
-  - 18505fe2bdb1
+  - fa11aa8103b2
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_variant
   owner: iuc
   revisions:
-  - ec699520444c
-  - 2bf63b38ee9b
   - cc36773a3681
-  - 0f5f4a208660
   - 222669c4afb6
+  - 2bf63b38ee9b
+  - 0f5f4a208660
+  - ec699520444c
+  - eb746fa6f514
   - edf6d4003fad
-  - 43815fa60f3a
   - 19f3b583a9b3
-  - eb746fa6f514
+  - 43815fa60f3a
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanocompore_sampcomp
   owner: iuc
   revisions:
-  - c0fb573c1e8d
   - b833eff63b10
+  - c0fb573c1e8d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanofilt
@@ -49,10 +49,10 @@ tools:
 - name: nanoplot
   owner: iuc
   revisions:
-  - 0f1c34698076
-  - a3c4fe6f49ab
   - 645159bcee2d
   - edbb6c5028f5
+  - a3c4fe6f49ab
+  - 0f1c34698076
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_eventalign
@@ -74,25 +74,25 @@ tools:
 - name: nanopolish_polya
   owner: bgruening
   revisions:
-  - d376944466bf
   - 449e9aeded2d
   - 4857d5bcce52
+  - d376944466bf
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_variants
   owner: bgruening
   revisions:
-  - bec636361cfd
   - a3afc5f0a96c
   - de5b3d8f5b90
+  - bec636361cfd
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: porechop
   owner: iuc
   revisions:
-  - 5f76b20953e5
   - 93d623d9979c
   - 543cbeef3949
+  - 5f76b20953e5
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_events
@@ -124,8 +124,8 @@ tools:
 - name: poretools_occupancy
   owner: iuc
   revisions:
-  - 338d15b8d6fb
   - 336791b5665f
+  - 338d15b8d6fb
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_qualdist
@@ -137,8 +137,8 @@ tools:
 - name: poretools_qualpos
   owner: iuc
   revisions:
-  - 4fe6b96aff72
   - 2e22ebec211a
+  - 4fe6b96aff72
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_squiggle
@@ -175,8 +175,8 @@ tools:
 - name: poretools_yield_plot
   owner: iuc
   revisions:
-  - ca22d8497db5
   - 64a83664b814
+  - ca22d8497db5
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pycoqc
diff --git a/usegalaxy.org.au/none.yml b/usegalaxy.org.au/none.yml
index da51271b2..d04e11796 100644
--- a/usegalaxy.org.au/none.yml
+++ b/usegalaxy.org.au/none.yml
@@ -28,8 +28,8 @@ tools:
 - name: data_manager_bowtie2_index_builder
   owner: devteam
   revisions:
-  - 1586b111d2a3
   - 9dd107db92c2
+  - 1586b111d2a3
   - 83da94c0e4a6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -50,8 +50,8 @@ tools:
 - name: data_manager_bwa_mem_index_builder
   owner: devteam
   revisions:
-  - 9e993022c762
   - 46066df8813d
+  - 9e993022c762
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwameth_index_builder
@@ -70,8 +70,8 @@ tools:
   owner: iuc
   revisions:
   - 48a42ca61006
-  - 38ccd4589990
   - 5711fc06a63e
+  - 38ccd4589990
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_diamond_database_builder
@@ -84,15 +84,15 @@ tools:
 - name: data_manager_eggnog_mapper_abspath
   owner: galaxyp
   revisions:
-  - 81a286e4c5a2
   - fcb8bdd124f4
+  - 81a286e4c5a2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_busco
   owner: iuc
   revisions:
-  - 15b97817550a
   - 2b4526fdf7fb
+  - 15b97817550a
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_genome_dbkeys_all_fasta
@@ -119,9 +119,9 @@ tools:
   owner: iuc
   revisions:
   - 52b6a4d98009
-  - 172815da3d41
-  - b4b2b284230a
   - 27a6a256cd23
+  - b4b2b284230a
+  - 172815da3d41
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gtdbtk_database_installer
@@ -133,8 +133,8 @@ tools:
 - name: data_manager_hisat2_index_builder
   owner: iuc
   revisions:
-  - d210e1f185bd
   - d74c740bdb25
+  - d210e1f185bd
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_humann2_database_downloader
@@ -154,8 +154,8 @@ tools:
 - name: data_manager_interproscan
   owner: iuc
   revisions:
-  - 7776cb18fdf8
   - 0df47f8552f6
+  - 7776cb18fdf8
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_kallisto_index_builder
@@ -179,9 +179,9 @@ tools:
 - name: data_manager_metaphlan_database_downloader
   owner: iuc
   revisions:
+  - 5fe20c915fa6
   - 9c43baa60906
   - 4ba60cb14cb0
-  - 5fe20c915fa6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mitos
@@ -193,26 +193,26 @@ tools:
 - name: data_manager_mothur_toolsuite
   owner: iuc
   revisions:
-  - 0db22932bc39
   - 9d09724f2bf1
   - aec831b54a5b
+  - 0db22932bc39
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_pangolearn
   owner: iuc
   revisions:
-  - 29c738066906
   - ed7a967cb11b
   - df30a2f1db55
+  - 29c738066906
   - 6e24e79d3d69
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_sam_fasta_index_builder
   owner: devteam
   revisions:
-  - ad90c2da4f38
   - 1865e693d8b2
   - 3e4d45aca422
+  - ad90c2da4f38
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_snpeff
@@ -232,16 +232,16 @@ tools:
   owner: iuc
   revisions:
   - 64deddb6a8ec
-  - d63c1442407f
   - c520a52b5174
+  - d63c1442407f
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_twobit_builder
   owner: devteam
   revisions:
-  - 94a50db37d1a
   - 9946bc39c834
   - 625fd9476402
+  - 94a50db37d1a
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_vep_cache_downloader
@@ -734,8 +734,8 @@ tools:
 - name: rdata_xcms_datatypes
   owner: lecorguille
   revisions:
-  - d64562a4ebb3
   - 544f6d2329ac
+  - d64562a4ebb3
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rsem_datatypes
diff --git a/usegalaxy.org.au/phylogenetics.yml b/usegalaxy.org.au/phylogenetics.yml
index e8e77c0d4..d6446729a 100644
--- a/usegalaxy.org.au/phylogenetics.yml
+++ b/usegalaxy.org.au/phylogenetics.yml
@@ -20,8 +20,8 @@ tools:
 - name: gubbins
   owner: iuc
   revisions:
-  - 637ec5d5368c
   - 96e6283e4745
+  - 637ec5d5368c
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hybpiper
@@ -33,115 +33,115 @@ tools:
 - name: hyphy_absrel
   owner: iuc
   revisions:
-  - 5a7c56a5cc08
-  - f04a1264e2a2
-  - 81e66674859e
+  - 3f59ebfbfe3d
   - b89cac5156ec
-  - 8834daeb9892
+  - c78f3d7dd1db
+  - '841557158611'
   - 26de3a7b1cb9
-  - 107d3ba7024a
-  - 3f59ebfbfe3d
   - d033ffc1c161
   - 6a457678efcb
+  - 81e66674859e
+  - 8834daeb9892
+  - f04a1264e2a2
   - a6619171428e
-  - '841557158611'
-  - 3b8b5bde0bd9
-  - cce7b18495e4
-  - c78f3d7dd1db
-  - f73435dc282b
+  - 5a7c56a5cc08
+  - 107d3ba7024a
   - d7c7ef3353fe
+  - f73435dc282b
+  - cce7b18495e4
+  - 3b8b5bde0bd9
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hyphy_gard
   owner: iuc
   revisions:
+  - 659517798cc4
+  - b0af57c1a968
+  - 6223845127ea
+  - 6283babe736e
+  - a185b079b095
+  - e75442c7f4da
   - 5fcd1ece3a6e
   - 6a726db04d4b
+  - 4755f52427c4
   - aa8cc71438cf
-  - 659517798cc4
-  - df47d4845b62
-  - 02b8758214b0
-  - 7a2092844346
   - 5b777002c2de
-  - b0af57c1a968
+  - 02b8758214b0
   - 3b96e92e8ec3
-  - a185b079b095
-  - 6223845127ea
   - 88c4aa435ded
-  - 4755f52427c4
-  - e75442c7f4da
-  - 6283babe736e
+  - 7a2092844346
+  - df47d4845b62
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: iqtree
   owner: iuc
   revisions:
-  - 9b892d7f82cc
-  - f97743d52b87
   - d1c340a5664b
   - b8476e82ac20
   - c1d53e95327f
+  - 9b892d7f82cc
+  - f97743d52b87
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nextclade
   owner: iuc
   revisions:
-  - 128ba8da994f
   - 9e10ba792be2
   - daddf188c13f
+  - 128ba8da994f
   - feb40665d7cd
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pangolin
   owner: iuc
   revisions:
-  - ca337cce3888
+  - 14ae456b8cc5
+  - a2099fb98cdb
   - 03ed9524dcd1
-  - 42a174224817
-  - 2f1019071464
   - b7e297c2ede6
-  - 14ae456b8cc5
+  - 2f1019071464
+  - 7bb8726be37c
   - 2fa9d4f1b48f
+  - 3a43c3982401
+  - 9d61d3fa046c
+  - 81804a978fc0
+  - 36912871ccdc
   - ca0d8cf80567
-  - 83a69484cb87
   - 5f8727ff21e7
-  - 36912871ccdc
+  - ca337cce3888
+  - 42a174224817
+  - 83a69484cb87
+  - abf6dbe8c9d7
   - b6abccb1f25b
-  - a2099fb98cdb
-  - 81804a978fc0
   - 437e28791761
-  - 7bb8726be37c
-  - 9d61d3fa046c
-  - abf6dbe8c9d7
-  - 3a43c3982401
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyml
   owner: iuc
   revisions:
-  - 2bf47d57ebb5
   - 7157a5b34a68
+  - 2bf47d57ebb5
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raxml
   owner: iuc
   revisions:
-  - b1e68bbe4cef
+  - ea30d3089354
   - 73a469f7dc96
+  - ba29b5e2a4be
   - 29ff6a849eac
   - a4b71be30c3c
-  - ba29b5e2a4be
-  - ea30d3089354
+  - b1e68bbe4cef
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: roary
   owner: iuc
   revisions:
-  - f1ccc8a6eb05
   - 15ac71df11a0
+  - f1ccc8a6eb05
   - e88a7de55d6e
-  - dbe2b2204555
   - 91887494eb97
+  - dbe2b2204555
   - 809e42326fc2
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/picard.yml b/usegalaxy.org.au/picard.yml
index e996a962f..aa2239c1f 100644
--- a/usegalaxy.org.au/picard.yml
+++ b/usegalaxy.org.au/picard.yml
@@ -2,13 +2,13 @@ tools:
 - name: picard
   owner: devteam
   revisions:
-  - a1f0b3f4b781
+  - 1aac2a13842a
   - 881d7645d1bf
   - f6ced08779c4
   - fc288950c3b7
   - b502c227b5e6
-  - f9242e01365a
-  - 1aac2a13842a
   - 7d34178f2812
+  - a1f0b3f4b781
+  - f9242e01365a
   tool_panel_section_label: Picard
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/proteomic_ai.yml b/usegalaxy.org.au/proteomic_ai.yml
index 2de56a6bd..104ed82af 100644
--- a/usegalaxy.org.au/proteomic_ai.yml
+++ b/usegalaxy.org.au/proteomic_ai.yml
@@ -2,14 +2,14 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
+  - d00e15139065
+  - ca90d17ff51b
+  - 5b85006245f3
   - 7fbec959cf2b
   - e4a053d67e24
+  - 3bd420ec162d
   - a58f7eb0df2c
-  - 5b85006245f3
   - c0e71cb2bd1b
-  - 3bd420ec162d
-  - ca90d17ff51b
   - eb085b3dbaf8
-  - d00e15139065
   tool_panel_section_label: Proteomic AI
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/proteomics.yml b/usegalaxy.org.au/proteomics.yml
index 42addb5fa..2a777e37a 100644
--- a/usegalaxy.org.au/proteomics.yml
+++ b/usegalaxy.org.au/proteomics.yml
@@ -2,21 +2,21 @@ tools:
 - name: cardinal_classification
   owner: galaxyp
   revisions:
-  - 277dc652246e
   - b574b84afc4d
   - f28ad96b76dc
-  - 0a18ac48ac53
   - ece627528a78
+  - 277dc652246e
   - b18329a8ac14
+  - 0a18ac48ac53
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_combine
   owner: galaxyp
   revisions:
-  - bf06d196e23d
-  - e215f71d7983
   - e988563cc6e5
+  - bf06d196e23d
   - 525f201b86c1
+  - e215f71d7983
   - b41107d8fe89
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -24,63 +24,63 @@ tools:
   owner: galaxyp
   revisions:
   - 4fbffddde8cd
-  - 8da3511c9467
   - bb6397b94018
+  - 8da3511c9467
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_filtering
   owner: galaxyp
   revisions:
-  - f23d67e28cc8
+  - 528fb09022be
   - a8157342d9a3
+  - f23d67e28cc8
   - b8c79e70516d
-  - 528fb09022be
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_mz_images
   owner: galaxyp
   revisions:
-  - 80600735685d
   - a95a82eb4d50
-  - 25b83cbd596a
   - 59e85306eae5
+  - 25b83cbd596a
+  - 80600735685d
   - a69865da6f80
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_preprocessing
   owner: galaxyp
   revisions:
-  - ed9ed1e6cca2
   - 798da6bdff3d
   - 611d80c0e29d
-  - f1897eb07081
+  - ed9ed1e6cca2
   - e0669b1854b1
+  - f1897eb07081
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_quality_report
   owner: galaxyp
   revisions:
-  - 5a35e3a8d013
-  - a7fb9b395ddf
   - 74b61bf5bc4b
+  - a7fb9b395ddf
+  - 5a35e3a8d013
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_segmentations
   owner: galaxyp
   revisions:
-  - df2187f9013b
   - cc430977c8ff
   - 82f6c2f4332d
+  - df2187f9013b
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_spectra_plots
   owner: galaxyp
   revisions:
-  - 043f9c91f686
-  - d2483487e077
-  - 10566783d718
   - c5aa9fca18c6
+  - d2483487e077
   - 1693b2126f30
+  - 10566783d718
+  - 043f9c91f686
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: custom_pro_db
@@ -98,9 +98,9 @@ tools:
 - name: diann
   owner: galaxyp
   revisions:
-  - 9fa3dbf06f17
   - ae4dc0c041f9
   - bf0728e000cd
+  - 9fa3dbf06f17
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: diapysef
@@ -119,9 +119,9 @@ tools:
 - name: encyclopedia_quantify
   owner: galaxyp
   revisions:
+  - 4081e4faa4ab
   - 1c5cbf8f79ce
   - 0fa397f4f40b
-  - 4081e4faa4ab
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_searchtolib
@@ -148,8 +148,8 @@ tools:
   owner: galaxyp
   revisions:
   - 160538a890a6
-  - e66f552a3c47
   - d286ff4600dd
+  - e66f552a3c47
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maldi_quant_preprocessing
@@ -169,52 +169,52 @@ tools:
 - name: maxquant
   owner: galaxyp
   revisions:
-  - 1f39c833f65f
-  - e42225f8a659
-  - 37d669de2828
-  - 2133b0be850a
-  - 7f432d87c82c
-  - 97a7f34fcb6a
-  - 4d17fcdeb8ff
-  - 837224ad1694
   - f522c08e900c
   - 8934bc76bb52
+  - 97a7f34fcb6a
+  - 7f432d87c82c
+  - e42225f8a659
+  - 837224ad1694
+  - 4d17fcdeb8ff
+  - 2133b0be850a
+  - 1f39c833f65f
+  - 37d669de2828
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_db
   owner: galaxyp
   revisions:
-  - 0ed07016d668
-  - '860429737408'
   - 85b8866f06d7
   - a72ac2c7cc5b
+  - '860429737408'
+  - 0ed07016d668
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_expand
   owner: galaxyp
   revisions:
-  - 4187b6df1a40
-  - 990b4560ead7
   - 352b37c66d97
+  - 4187b6df1a40
   - 1974224d63c2
+  - 990b4560ead7
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_filter
   owner: galaxyp
   revisions:
-  - 4f359549383c
   - 99450519d727
-  - a1daafbf5233
   - deaf035bbe9f
+  - a1daafbf5233
+  - 4f359549383c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_sample
   owner: galaxyp
   revisions:
-  - c1343e3389ca
+  - e79958768a2c
   - c7745841de24
+  - c1343e3389ca
   - 40ca115438d2
-  - e79958768a2c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_stat
@@ -222,17 +222,17 @@ tools:
   revisions:
   - da986f83631b
   - d2eac53666f0
-  - d46d64e7964d
   - b648e45fd3cf
+  - d46d64e7964d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_viz
   owner: galaxyp
   revisions:
+  - 1199751329b0
   - eb811f3018ea
   - 9bf325045235
   - 944b43462104
-  - 1199751329b0
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: morpheus
@@ -259,23 +259,23 @@ tools:
 - name: msstatstmt
   owner: galaxyp
   revisions:
-  - bd1535813cfe
   - a5e394b36d87
+  - bd1535813cfe
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_consensusid
   owner: galaxyp
   revisions:
   - 4e77b8f12cd3
-  - 01dbaf6a57e0
   - 8960fb791701
+  - 01dbaf6a57e0
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_decoydatabase
   owner: galaxyp
   revisions:
-  - 370141bc0da3
   - 25529df60a81
+  - 370141bc0da3
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_falsediscoveryrate
@@ -290,65 +290,65 @@ tools:
 - name: openms_featurefindermultiplex
   owner: galaxyp
   revisions:
-  - dff6c756eee5
   - ca88bd28f116
+  - dff6c756eee5
   - 5e948629bc73
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fidoadapter
   owner: galaxyp
   revisions:
+  - 658494a2cb00
   - 41859bbdc16e
   - 890025d6e426
-  - 658494a2cb00
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileconverter
   owner: galaxyp
   revisions:
-  - 9b7977080f6d
   - 5ad0b5bf1deb
+  - 9b7977080f6d
   - 6634cad7d797
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filefilter
   owner: galaxyp
   revisions:
-  - d6878d27f051
-  - 05d5e1ddc985
   - 0bb5056cb775
+  - 05d5e1ddc985
+  - d6878d27f051
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileinfo
   owner: galaxyp
   revisions:
-  - febd569ad26f
   - 5ad830edc021
   - 52ba9695e752
+  - febd569ad26f
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filemerger
   owner: galaxyp
   revisions:
   - 39e8fde08881
-  - 27cba4c5fc42
   - 92352a475eed
+  - 27cba4c5fc42
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_highresprecursormasscorrector
   owner: galaxyp
   revisions:
-  - 9e26f5c770f8
-  - 0efbc235f314
   - d413dc49d650
+  - 0efbc235f314
+  - 9e26f5c770f8
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idconflictresolver
   owner: galaxyp
   revisions:
   - 3720e349ba2a
-  - c28f13cab67a
   - 8a04ed1c1d1b
+  - c28f13cab67a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idfilter
@@ -356,41 +356,41 @@ tools:
   revisions:
   - 382cde407f81
   - c427a8628cbe
-  - ca799a7246e7
   - c55dddc5844a
+  - ca799a7246e7
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmapper
   owner: galaxyp
   revisions:
+  - 39caaa778d2e
   - b5d0905419da
   - 8ddb7bab1138
-  - 39caaa778d2e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmerger
   owner: galaxyp
   revisions:
   - 18f93351f8b6
-  - f817513840a9
-  - 8d4db262964c
   - 1c5f31b8d632
+  - 8d4db262964c
+  - f817513840a9
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idposteriorerrorprobability
   owner: galaxyp
   revisions:
-  - 5d9f175dff81
   - 111c3a00136d
+  - 5d9f175dff81
   - c69f69d7867a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idscoreswitcher
   owner: galaxyp
   revisions:
-  - 476b5e296979
   - be74a8cd7d66
   - 0e52c85f3b15
+  - 476b5e296979
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msfraggeradapter
@@ -419,29 +419,29 @@ tools:
   owner: galaxyp
   revisions:
   - 8098330f6d91
-  - ee860980edc6
   - bf32e0bcf554
+  - ee860980edc6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathanalyzer
   owner: galaxyp
   revisions:
-  - a2a6e9551046
   - 0ced5bc9f4dd
+  - a2a6e9551046
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathassaygenerator
   owner: galaxyp
   revisions:
-  - 8c01da82292c
   - 2a9ff56cb279
+  - 8c01da82292c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathconfidencescoring
   owner: galaxyp
   revisions:
-  - 1bf940c18d93
   - e8f64a7dc470
+  - 1bf940c18d93
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdecoygenerator
@@ -454,29 +454,29 @@ tools:
 - name: openms_openswathdiaprescoring
   owner: galaxyp
   revisions:
-  - 0bddef8d144e
   - d4396637b9f5
+  - 0bddef8d144e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathfilesplitter
   owner: galaxyp
   revisions:
-  - 89254095cbf6
   - 8b814eafce2c
+  - 89254095cbf6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathmzmlfilecacher
   owner: galaxyp
   revisions:
-  - f9ed7e074900
   - 05ec9fb05ed1
+  - f9ed7e074900
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathrtnormalizer
   owner: galaxyp
   revisions:
-  - 6e8cc5ed2a9b
   - 18826fb8e5db
+  - 6e8cc5ed2a9b
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathworkflow
@@ -489,16 +489,16 @@ tools:
 - name: openms_peakpickerhires
   owner: galaxyp
   revisions:
-  - 5ae104d0da6e
   - 3d8d4ada5405
   - decc397c3b7e
+  - 5ae104d0da6e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_peptideindexer
   owner: galaxyp
   revisions:
-  - 5182338d5e7c
   - 539a3a4dcc9e
+  - 5182338d5e7c
   - e039cc5c7aed
   - dd173849c3d8
   tool_panel_section_label: Proteomics
@@ -506,8 +506,8 @@ tools:
 - name: openms_proteinquantifier
   owner: galaxyp
   revisions:
-  - 16026cdb1330
   - 8a45fd5a608a
+  - 16026cdb1330
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_targetedfileconverter
@@ -519,8 +519,8 @@ tools:
 - name: openms_textexporter
   owner: galaxyp
   revisions:
-  - 9020199dba0a
   - d063e2fe4ba4
+  - 9020199dba0a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_xmlvalidator
@@ -532,36 +532,36 @@ tools:
 - name: openms_xtandemadapter
   owner: galaxyp
   revisions:
-  - fb52e95a370c
   - 7f6a1f27553e
   - c8b225c69a7f
+  - fb52e95a370c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pep_pointer
   owner: galaxyp
   revisions:
-  - a6282baa8c6f
   - 073a2965e3b2
+  - a6282baa8c6f
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: peptide_genomic_coordinate
   owner: galaxyp
   revisions:
-  - 5f49ffce52cb
   - cb0378d2d487
+  - 5f49ffce52cb
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: peptideshaker
   owner: galaxyp
   revisions:
-  - 3634c90301af
+  - 3ec27b4cee7c
+  - a72c48001f7c
   - da885ca16cb2
   - 1beff3ddce58
+  - 07ff622ec007
   - 943a34df6047
+  - 3634c90301af
   - 7fdd9119cc4f
-  - a72c48001f7c
-  - 3ec27b4cee7c
-  - 07ff622ec007
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: percolator
@@ -615,10 +615,10 @@ tools:
 - name: uniprotxml_downloader
   owner: galaxyp
   revisions:
-  - 265c35540faa
   - 12692567c7f9
-  - 1a5690a5eedc
+  - 265c35540faa
   - a371252a2cf6
+  - 1a5690a5eedc
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: xtandem
diff --git a/usegalaxy.org.au/rad_seq.yml b/usegalaxy.org.au/rad_seq.yml
index 2a21a4f59..d0c771d40 100644
--- a/usegalaxy.org.au/rad_seq.yml
+++ b/usegalaxy.org.au/rad_seq.yml
@@ -2,118 +2,118 @@ tools:
 - name: stacks2_clonefilter
   owner: iuc
   revisions:
-  - 2f1d464ebfd2
-  - 289b7d6b69a4
+  - cd5f98911089
   - 110a346daf36
   - e345aadf914f
+  - 289b7d6b69a4
   - 42201b90e3f4
-  - cd5f98911089
+  - 2f1d464ebfd2
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_cstacks
   owner: iuc
   revisions:
-  - 8501601a118d
+  - 0cd2df8af811
   - c207119ba5f6
+  - 8501601a118d
   - 42d9087b4789
-  - 0345dbaaa79b
   - fcce77c09289
-  - 0cd2df8af811
+  - 0345dbaaa79b
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_denovomap
   owner: iuc
   revisions:
-  - 421c33b8bf17
-  - 89eb29319bf4
-  - 405a212b32ab
   - 33486216eec0
-  - 04db7fd6b238
+  - 421c33b8bf17
   - ad5ab22ffe24
+  - 04db7fd6b238
+  - 405a212b32ab
+  - 89eb29319bf4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_gstacks
   owner: iuc
   revisions:
   - 1d839ead7ad3
-  - eb784fa07f80
-  - f6e91108b7b1
-  - 7b72fde3d27e
   - fa51dc5e8386
   - 7370bb65bad4
+  - f6e91108b7b1
+  - eb784fa07f80
+  - 7b72fde3d27e
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_kmerfilter
   owner: iuc
   revisions:
-  - 8a55d29c8fcf
+  - 1544278c272e
+  - d30e36c48c93
   - a3e86cd9cac7
+  - 8a55d29c8fcf
   - 3d70c2996730
-  - 1544278c272e
   - c9b77ced9a78
-  - d30e36c48c93
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_populations
   owner: iuc
   revisions:
-  - a5969aa9347e
-  - 7b881f5f5ad5
-  - b242deb58952
+  - e2db212d64ad
   - 564c33e5c3e3
   - 887cf585cafc
-  - e2db212d64ad
+  - b242deb58952
+  - 7b881f5f5ad5
+  - a5969aa9347e
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_procrad
   owner: iuc
   revisions:
-  - e897c74a48bb
-  - bd5ff77e2036
-  - b4bab607eb05
-  - 9a171f9a450b
   - 8cff84759bf6
+  - 9a171f9a450b
+  - b4bab607eb05
+  - bd5ff77e2036
+  - e897c74a48bb
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_refmap
   owner: iuc
   revisions:
-  - 4f65e343ecdf
+  - 5e10f396979e
   - 887e0991eb24
   - 33f0793edf93
-  - 5e10f396979e
-  - 6dafad990086
+  - 4f65e343ecdf
   - adc7a7610d4f
+  - 6dafad990086
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_shortreads
   owner: iuc
   revisions:
-  - c5d7050e4ad7
-  - 4e280b27a831
   - 17d39bf0a63a
+  - c5d7050e4ad7
   - c287418eb288
-  - 43e3eeb2e0ec
+  - 4e280b27a831
   - 97575d01f06b
+  - 43e3eeb2e0ec
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_sstacks
   owner: iuc
   revisions:
-  - cd034465d4a4
+  - a819ec3b362d
   - 09b8edb56d80
   - 0b8c84a7fdb5
-  - a819ec3b362d
-  - d9bf483266a1
+  - cd034465d4a4
   - 9586f08634c0
+  - d9bf483266a1
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_tsv2bam
   owner: iuc
   revisions:
-  - a9c34a289493
   - a4b4bd84f69e
   - 69842dd5aa48
+  - a9c34a289493
   - 95351dd0fd3f
   - 2645575d1bf2
   - bf0e43ab0416
@@ -122,12 +122,12 @@ tools:
 - name: stacks2_ustacks
   owner: iuc
   revisions:
-  - d033e1ccb386
-  - 912f904a6e1e
-  - bb0475c884ff
   - d1fda11e602f
   - 8a35a3bc6752
   - cfb504394ae1
+  - bb0475c884ff
+  - d033e1ccb386
+  - 912f904a6e1e
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_assembleperead
@@ -163,8 +163,8 @@ tools:
 - name: stacks_populations
   owner: iuc
   revisions:
-  - 95286af4139b
   - d504d945a655
+  - 95286af4139b
   - d1fad35bdb4a
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/rna_seq.yml b/usegalaxy.org.au/rna_seq.yml
index 9c345d513..66a0351bf 100644
--- a/usegalaxy.org.au/rna_seq.yml
+++ b/usegalaxy.org.au/rna_seq.yml
@@ -3,16 +3,16 @@ tools:
   owner: iuc
   revisions:
   - 2d4e3aff9dc7
-  - cf01dd6c6b1f
   - 31f8063eedea
+  - cf01dd6c6b1f
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba_get_filters
   owner: iuc
   revisions:
-  - 703a2cb3fb38
   - 125d20cb23d7
   - 32e542c2a773
+  - 703a2cb3fb38
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba
@@ -72,8 +72,8 @@ tools:
 - name: cuffnorm
   owner: devteam
   revisions:
-  - 9a854107dbb2
   - 6cbfede05833
+  - 9a854107dbb2
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffquant
@@ -98,53 +98,53 @@ tools:
   owner: iuc
   revisions:
   - 3b36efd62b3e
-  - 0693ccd171c4
   - e3b16fd7dd08
+  - 0693ccd171c4
   - 8f0181aacb7a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deseq2
   owner: iuc
   revisions:
-  - d027d1f4984e
-  - 24a09ca67621
-  - 9a882d108833
-  - 6a3a025714d3
-  - cd9874cb9019
   - 0696db066a5b
   - 8fe98f7094de
+  - 6a3a025714d3
+  - 9a882d108833
+  - cd9874cb9019
+  - 24a09ca67621
+  - d027d1f4984e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dexseq
   owner: iuc
   revisions:
   - 2872c633f07e
-  - b47c006d90c5
-  - 62adf13b86ea
   - df929f257179
+  - 62adf13b86ea
+  - b47c006d90c5
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: edger
   owner: iuc
   revisions:
-  - 5bf899c13979
-  - 3d89af8a44f0
-  - 555659de7321
   - f2843df56434
   - 0cb907a2a810
-  - 6e53e565fc6a
-  - 9bdff28ae1b1
+  - 555659de7321
   - 070900306913
+  - 9bdff28ae1b1
   - 334ce9b1bac5
-  - df0c8d0a5992
+  - 6e53e565fc6a
   - a8305cf0c951
+  - df0c8d0a5992
+  - 5bf899c13979
+  - 3d89af8a44f0
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: egsea
   owner: iuc
   revisions:
-  - fba1660fb717
   - 31ea4992b948
+  - fba1660fb717
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: express
@@ -156,17 +156,17 @@ tools:
 - name: featurecounts
   owner: iuc
   revisions:
-  - 7db9d3ea71c9
-  - f3a5f075498f
+  - 6f66ae7c5f7a
   - e6a2a912677a
   - a56fbe2d6ba7
   - af814359d244
+  - 90d16db017d7
+  - a37612abf7f9
   - f9d49f5cb597
-  - 38b6d12edc68
+  - 7db9d3ea71c9
   - ea04b737afa0
-  - a37612abf7f9
-  - 6f66ae7c5f7a
-  - 90d16db017d7
+  - 38b6d12edc68
+  - f3a5f075498f
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filter_transcripts_via_tracking
@@ -184,9 +184,9 @@ tools:
 - name: gffcompare
   owner: iuc
   revisions:
-  - 0f710191a66d
   - f99dd58de04f
   - 3c97c841a443
+  - 0f710191a66d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: heinz
@@ -199,19 +199,19 @@ tools:
   owner: iuc
   revisions:
   - f4af63aaf57a
+  - d4b55e2beb12
   - 6ab42baa56e9
-  - a86e80d3c09c
   - 3fb01a8c902d
   - 26371a1df031
-  - d4b55e2beb12
+  - a86e80d3c09c
   - 6c19daec423d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: htseq_count
   owner: lparsons
   revisions:
-  - 67b0b160903a
   - 916cb26bd9d3
+  - 67b0b160903a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: isoformswitchanalyzer
@@ -223,32 +223,32 @@ tools:
 - name: kallisto_pseudo
   owner: iuc
   revisions:
-  - 87c11c05d238
-  - ce5d418183c5
-  - 1c75aa5de15e
   - 01247aaf0a10
   - 5ae5c312d718
+  - 1c75aa5de15e
+  - ce5d418183c5
+  - 87c11c05d238
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kallisto_quant
   owner: iuc
   revisions:
-  - 40985510cd98
   - c971db6f0fe5
-  - 10c98fab6c5a
   - 4f9c4e6566e5
+  - 40985510cd98
+  - 10c98fab6c5a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: limma_voom
   owner: iuc
   revisions:
-  - 708348a17fa1
+  - e827f9aae031
+  - 58c35179ebf0
   - d6f5fa4ee473
-  - 0921444c832d
   - 97e06a4c7c75
-  - 58c35179ebf0
-  - e827f9aae031
+  - 708348a17fa1
   - 32511f586472
+  - 0921444c832d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mircounts
@@ -297,19 +297,19 @@ tools:
 - name: rgrnastar
   owner: iuc
   revisions:
-  - 0a563fd2f22e
-  - 4df95e2d7f61
-  - 980d2a2e1180
-  - c772497b2c32
   - 7ed2edc1337f
+  - c7c55b694974
   - b9e04854e2bb
-  - 99b17b74a8cd
-  - 79de45b5069b
   - 4074fc1940e2
-  - c7c55b694974
-  - e132e7d02a3e
+  - 4df95e2d7f61
   - 3ea5a2a63fa2
+  - 0a563fd2f22e
+  - 99b17b74a8cd
+  - c772497b2c32
+  - e132e7d02a3e
   - 5ec75f5dae3c
+  - 79de45b5069b
+  - 980d2a2e1180
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sailfish
@@ -321,33 +321,33 @@ tools:
 - name: salmon
   owner: bgruening
   revisions:
+  - 15cd64d7c58b
   - cc05793bb896
-  - e3d32471da11
+  - 2c0ca397d302
+  - 49121db48873
   - ebab418107f5
+  - e3d32471da11
   - 53e9709776a0
-  - 49121db48873
-  - 2c0ca397d302
-  - 15cd64d7c58b
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seurat
   owner: iuc
   revisions:
-  - 8c28affc7c48
   - fab6ff46e019
   - c0fd285eb553
+  - 8c28affc7c48
   - 56242ff81c84
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
   owner: iuc
   revisions:
-  - cef79931dda5
-  - dd4df992d93d
+  - 76d290331481
   - 914cfcba0ec8
   - 258d696dbd7e
+  - cef79931dda5
+  - dd4df992d93d
   - 1ebd14235b92
-  - 76d290331481
   - ae618321f34a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -372,104 +372,104 @@ tools:
 - name: transdecoder
   owner: iuc
   revisions:
-  - ffd1300599a1
-  - 0db979fead3a
   - c6334cb383ff
   - d0d4cef4f967
+  - ffd1300599a1
+  - 0db979fead3a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_abundance_estimates_to_matrix
   owner: iuc
   revisions:
-  - d6a479fd4281
   - ba3720d7e68b
-  - 74217fbfba4d
+  - d6a479fd4281
   - bcc5f03f1900
+  - 74217fbfba4d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_align_and_estimate_abundance
   owner: iuc
   revisions:
+  - 2fb4ee002432
+  - 56162e446004
   - c2b82a94493e
   - 478f36effca1
-  - 56162e446004
-  - 2fb4ee002432
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_analyze_diff_expr
   owner: iuc
   revisions:
-  - 9ff3765e7172
   - 3f4094b6a565
   - fab23c3b5258
+  - 9ff3765e7172
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_contig_exn50_statistic
   owner: iuc
   revisions:
   - 4687ecf0eb2d
-  - 34a018cbee9c
   - be3f26533209
   - 870ac06dff8e
+  - 34a018cbee9c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_define_clusters_by_cutting_tree
   owner: iuc
   revisions:
-  - 5192f657f305
-  - 05ab8d5e04a2
-  - 33406f5a445c
   - 65e7dea767ea
+  - 33406f5a445c
+  - 05ab8d5e04a2
+  - 5192f657f305
   - c5fbddcac63a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_filter_low_expr_transcripts
   owner: iuc
   revisions:
-  - 6f0fb35b799c
-  - a35cba31d904
   - 1fdb25a8384d
+  - a35cba31d904
+  - 6f0fb35b799c
   - e406ac71165d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_gene_to_trans_map
   owner: iuc
   revisions:
-  - c2c039e421af
-  - 964b7efe2639
   - 37a1129c89d2
+  - c2c039e421af
   - 7c7fbf13aadd
+  - 964b7efe2639
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_run_de_analysis
   owner: iuc
   revisions:
-  - eafea3083352
   - 24e94d84adc9
   - 047c22569787
   - 1d689e4e1caf
+  - eafea3083352
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_samples_qccheck
   owner: iuc
   revisions:
   - 04bb8bb7c198
-  - 1812dbc5bb7b
   - 9871104ea630
   - 3a4ac03d1266
+  - 1812dbc5bb7b
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity
   owner: iuc
   revisions:
-  - 32b86cd8eb50
+  - d2bc35f3d1c5
+  - c9cfec002f71
   - db1f362cca3e
-  - 9fa24d5aac68
+  - 32b86cd8eb50
   - 8f1c3df4dd49
-  - c9cfec002f71
   - 48636f857c4b
+  - 9fa24d5aac68
   - d84caa5a98ad
-  - d2bc35f3d1c5
   - cee61b3fcf78
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/rseqc.yml b/usegalaxy.org.au/rseqc.yml
index b41c54fe8..ee91e8906 100644
--- a/usegalaxy.org.au/rseqc.yml
+++ b/usegalaxy.org.au/rseqc.yml
@@ -2,8 +2,8 @@ tools:
 - name: rseqc
   owner: nilesh
   revisions:
-  - 080fd5739bb4
   - 1a052c827e88
   - 473382134e56
+  - 080fd5739bb4
   tool_panel_section_label: RSeQC
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/sambam.yml b/usegalaxy.org.au/sambam.yml
index 9189d7ae3..c4243dee6 100644
--- a/usegalaxy.org.au/sambam.yml
+++ b/usegalaxy.org.au/sambam.yml
@@ -10,8 +10,8 @@ tools:
 - name: bamtools_filter
   owner: devteam
   revisions:
-  - 108db6635177
   - cb20f99fd45b
+  - 108db6635177
   - 1dfd95ee241e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -43,8 +43,8 @@ tools:
   owner: iuc
   revisions:
   - 19ece8afbaab
-  - 5f8e69cc4c6e
   - e7fd6754d093
+  - 5f8e69cc4c6e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: qualimap_multi_bamqc
@@ -68,8 +68,8 @@ tools:
 - name: sam_pileup
   owner: devteam
   revisions:
-  - 890d97772e2a
   - a3b4ad6858ff
+  - 890d97772e2a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam_to_bam
@@ -88,74 +88,74 @@ tools:
 - name: samtool_filter2
   owner: devteam
   revisions:
-  - 56c31114ad4a
   - 649a225999a5
+  - 56c31114ad4a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bedcov
   owner: devteam
   revisions:
-  - 12749212f61b
-  - 6856f8a01905
   - 9149ad20699a
   - 46c6639921f1
+  - 6856f8a01905
+  - 12749212f61b
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_calmd
   owner: devteam
   revisions:
-  - 92ec40abcdcf
-  - 06dc50b7b711
   - 33208952b99d
   - c89806670ab9
+  - 92ec40abcdcf
+  - 06dc50b7b711
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_fastx
   owner: iuc
   revisions:
-  - 720217c23995
-  - 66e23b11feae
   - a8d69aee190e
   - b3d99709fe1a
+  - 66e23b11feae
+  - 720217c23995
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_flagstat
   owner: devteam
   revisions:
-  - cc61ade70eb8
+  - fefd89ab563c
   - 22970df7a40e
+  - cc61ade70eb8
   - db17d5321bad
-  - fefd89ab563c
   - fe34990e5ce7
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_idxstats
   owner: devteam
   revisions:
-  - 7def34e6cf4d
-  - 88b8c2916784
+  - fa5d3e61e429
   - 811fc2d75ad4
   - 7a6034296ae9
-  - fa5d3e61e429
+  - 88b8c2916784
+  - 7def34e6cf4d
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_merge
   owner: iuc
   revisions:
   - b40e2d865d52
-  - 36677f429310
   - 740ce0a18f0d
+  - 36677f429310
   - 65a38e8c8e2a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
   owner: devteam
   revisions:
-  - 8da515fbc1bf
-  - 583abf29fc8e
   - 9da0311ab1dd
-  - 329deb17a9f7
   - b61f5d6a7f25
+  - 329deb17a9f7
+  - 8da515fbc1bf
+  - 583abf29fc8e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_phase
@@ -168,10 +168,10 @@ tools:
 - name: samtools_reheader
   owner: devteam
   revisions:
-  - 30388d878f81
+  - d7b4851d1971
   - bb8cfc6f6e0c
+  - 30388d878f81
   - db000c6007a0
-  - d7b4851d1971
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_rmdup
@@ -193,40 +193,40 @@ tools:
   revisions:
   - a577ea614bed
   - 6c2c1836728b
-  - cab3f8d35989
   - e613c1ad4c4c
+  - cab3f8d35989
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_split
   owner: devteam
   revisions:
-  - 5d9ae78f34d3
   - 135c85f4cfaf
-  - b7f7826ef1cd
   - bcedabb53ddf
+  - 5d9ae78f34d3
+  - b7f7826ef1cd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_stats
   owner: devteam
   revisions:
+  - 145f6d74ff5e
+  - 5a08c09b9311
+  - fed4aa48ba09
   - 3a0efe14891f
-  - 1cc79f49b8d5
   - 24c5d43cb545
-  - fed4aa48ba09
-  - 5a08c09b9311
-  - 145f6d74ff5e
+  - 1cc79f49b8d5
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_view
   owner: iuc
   revisions:
-  - b72793637686
-  - 350bbc5c2ffd
-  - 6be888be75f9
-  - 0dbf49c414ae
   - bf328cec6a42
-  - c370440f901e
+  - 0dbf49c414ae
+  - 350bbc5c2ffd
+  - b72793637686
   - b01db2684fa5
+  - c370440f901e
+  - 6be888be75f9
   - 5826298f6a73
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/send_data.yml b/usegalaxy.org.au/send_data.yml
index dd0ba40c5..67c187bbd 100644
--- a/usegalaxy.org.au/send_data.yml
+++ b/usegalaxy.org.au/send_data.yml
@@ -3,10 +3,10 @@ tools:
   owner: iuc
   revisions:
   - 4aab5ae907b6
-  - 59bb6d34fca6
   - 480d9e9d156b
-  - a62c4a11a67d
-  - 6f6537780379
+  - 59bb6d34fca6
   - d147d6455873
+  - 6f6537780379
+  - a62c4a11a67d
   tool_panel_section_label: Send Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/single_cell.yml b/usegalaxy.org.au/single_cell.yml
index 60f69da72..16bd8da41 100644
--- a/usegalaxy.org.au/single_cell.yml
+++ b/usegalaxy.org.au/single_cell.yml
@@ -2,41 +2,41 @@ tools:
 - name: anndata_import
   owner: iuc
   revisions:
-  - 32e547223c9e
   - 93dd15e13e6a
-  - cfc3f5a57dc6
+  - 32e547223c9e
+  - 55e35e9203cf
   - fb9e030ffae4
+  - cfc3f5a57dc6
   - 00712416fdaa
-  - 55e35e9203cf
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_inspect
   owner: iuc
   revisions:
-  - 038e32885fec
   - b9fac48532eb
-  - 688357ad5e61
   - ee98d611afc6
+  - 688357ad5e61
+  - 038e32885fec
   - 39e945f0b2c1
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_manipulate
   owner: iuc
   revisions:
-  - 9bd945a03d7b
-  - 43cb7b5a6fe7
-  - 3d748954434b
   - d4af736e7b83
-  - b85871dd69f9
+  - 3d748954434b
   - ed4996a16f7f
+  - 43cb7b5a6fe7
+  - 9bd945a03d7b
+  - b85871dd69f9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dropletutils
   owner: iuc
   revisions:
   - 8855361fcfc5
-  - a9caad671439
   - cdf4443d5625
+  - a9caad671439
   - 2c1200fba922
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -56,8 +56,8 @@ tools:
 - name: music_deconvolution
   owner: bgruening
   revisions:
-  - 2ba99a52bd44
   - 56371b5a2da9
+  - 2ba99a52bd44
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_inspect_eset
@@ -76,15 +76,15 @@ tools:
 - name: raceid_clustering
   owner: iuc
   revisions:
-  - f911a64454fb
   - 0bff0ee0683a
+  - f911a64454fb
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspectclusters
   owner: iuc
   revisions:
-  - 2b0d3e2f402a
   - f3eb2291da05
+  - 2b0d3e2f402a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspecttrajectory
@@ -97,17 +97,17 @@ tools:
 - name: raceid_trajectory
   owner: iuc
   revisions:
-  - 2af7c5086a96
   - c92d0f9338c5
+  - 2af7c5086a96
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_cluster_reduce_dimension
   owner: iuc
   revisions:
+  - b2df381a6004
+  - 6acb08931836
   - aaa5da8e73a9
   - 77b91b9bdf52
-  - 6acb08931836
-  - b2df381a6004
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter
@@ -115,53 +115,53 @@ tools:
   revisions:
   - 3c86f71498bc
   - a03ff8633507
-  - b409c2486353
   - a97abb8cd15b
+  - b409c2486353
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_inspect
   owner: iuc
   revisions:
   - 6bd82ed14acd
+  - 5e9171dc8244
   - 3081ff5c84a3
   - c5d3684f7c4c
-  - 5e9171dc8244
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_normalize
   owner: iuc
   revisions:
-  - 94c19fb1281c
   - 3bcd5445cd7a
-  - ab55fe8030b6
+  - 94c19fb1281c
   - a407e7f8bdc1
+  - ab55fe8030b6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot
   owner: iuc
   revisions:
-  - 9b0cdb8cf6be
-  - dbbe1ea8ecb1
   - 6adf98e782f3
+  - dbbe1ea8ecb1
+  - 9b0cdb8cf6be
   - aa0c474463c2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_remove_confounders
   owner: iuc
   revisions:
-  - 73ab2ac53d06
-  - 215733a383f2
-  - bf2017df9837
   - f2f6c703da06
+  - bf2017df9837
+  - 215733a383f2
   - 458e8f43a775
+  - 73ab2ac53d06
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_create_qcmetric_ready_sce
   owner: iuc
   revisions:
+  - b834074a9aff
   - fd808de478b1
   - 8f333f90d8d6
-  - b834074a9aff
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_filter
@@ -175,9 +175,9 @@ tools:
 - name: scater_plot_dist_scatter
   owner: iuc
   revisions:
-  - 2e41b35b5bdd
   - ef4c80837bc5
   - 81e5bdff4853
+  - 2e41b35b5bdd
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_pca
diff --git a/usegalaxy.org.au/statistics.yml b/usegalaxy.org.au/statistics.yml
index b33c770b9..8af77246c 100644
--- a/usegalaxy.org.au/statistics.yml
+++ b/usegalaxy.org.au/statistics.yml
@@ -32,11 +32,11 @@ tools:
 - name: datamash_ops
   owner: iuc
   revisions:
-  - 2f3c6f2dcf39
-  - 562f3c677828
-  - 419027d822d6
   - 4c07ddedc198
+  - 562f3c677828
   - 746e8e4bf929
+  - 419027d822d6
+  - 2f3c6f2dcf39
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_ava_perclass
@@ -56,8 +56,8 @@ tools:
 - name: dwt_ivc_all
   owner: devteam
   revisions:
-  - 0b89b03ad760
   - 506ae7b0d85d
+  - 0b89b03ad760
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_var_perclass
@@ -70,9 +70,9 @@ tools:
 - name: dwt_var_perfeature
   owner: devteam
   revisions:
-  - 7a15159140d1
-  - 6c29c7e347e8
   - cb1c59d69557
+  - 6c29c7e347e8
+  - 7a15159140d1
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: generate_pc_lda_matrix
@@ -114,30 +114,30 @@ tools:
 - name: sklearn_build_pipeline
   owner: bgruening
   revisions:
+  - b1eda492f063
+  - 7442b94d6a1e
+  - 9c3e1d3235c8
   - aef56d0e7a61
   - 4c4ec859c31a
-  - 7442b94d6a1e
   - 840f29aad145
-  - 9c3e1d3235c8
-  - b1eda492f063
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_estimator_attributes
   owner: bgruening
   revisions:
-  - 30d21a6041f6
   - 9fda0b82f419
+  - 30d21a6041f6
+  - 375bbd555f4a
   - d0352e8b4c10
   - 07843f917990
-  - 375bbd555f4a
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_nn_classifier
   owner: bgruening
   revisions:
+  - 2c58b83c9bad
   - cd02bf168d23
   - 8b1b2b91f8d0
-  - 2c58b83c9bad
   - 4cc980df6265
   - 7ae443e6217d
   tool_panel_section_label: Statistics
@@ -145,12 +145,12 @@ tools:
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
+  - 4bbaf77573ef
   - bb9fc9d46ea4
   - 7dd3fb35904f
   - ad7e0b4291ee
-  - 4bbaf77573ef
-  - e10e776f2109
   - 1dd433d2c92c
+  - e10e776f2109
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: t_test_two_samples
diff --git a/usegalaxy.org.au/text_manipulation.yml b/usegalaxy.org.au/text_manipulation.yml
index 802858a54..641c97f8d 100644
--- a/usegalaxy.org.au/text_manipulation.yml
+++ b/usegalaxy.org.au/text_manipulation.yml
@@ -8,8 +8,8 @@ tools:
 - name: add_value
   owner: devteam
   revisions:
-  - 023f0a3760b3
   - 745871c0b055
+  - 023f0a3760b3
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_element_identifiers
@@ -28,13 +28,13 @@ tools:
 - name: column_maker
   owner: devteam
   revisions:
+  - be25c075ed54
+  - 13b6f0007d9e
   - 9cd341095afd
   - 464b9305180e
   - 02026300aa45
-  - 6e8d94597139
-  - 13b6f0007d9e
-  - be25c075ed54
   - 6595517c2dd8
+  - 6e8d94597139
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_remove_by_header
@@ -46,8 +46,8 @@ tools:
 - name: concatenate_multiple_datasets
   owner: artbio
   revisions:
-  - 6f54dc6b37da
   - 3a4694d4354f
+  - 6f54dc6b37da
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: concatenate_multiple_datasets
@@ -72,9 +72,9 @@ tools:
   owner: iuc
   revisions:
   - 37cde8134c6a
-  - 557ec8d7087d
   - 34d29339abab
   - 9cc411a62277
+  - 557ec8d7087d
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gff3_rebase
@@ -98,20 +98,20 @@ tools:
 - name: merge_cols
   owner: devteam
   revisions:
-  - dd40b1e9eebe
   - ae7843d06f8f
+  - dd40b1e9eebe
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: query_tabular
   owner: iuc
   revisions:
-  - 83069b38aa85
-  - 33d61c89fb8d
+  - cf34c344508d
   - 623f3eb7aa48
-  - 3a6b78c39dca
+  - 33d61c89fb8d
+  - 83069b38aa85
   - 1ea4e668bf73
+  - 3a6b78c39dca
   - 2e8f945f7285
-  - cf34c344508d
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: regex_find_replace
@@ -132,25 +132,25 @@ tools:
   owner: iuc
   revisions:
   - f768f6183386
-  - bce29ec10b78
   - b722161a845a
+  - bce29ec10b78
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: table_compute
   owner: iuc
   revisions:
-  - 3bf5661c0280
   - 60ff16842fcd
+  - 3bf5661c0280
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: text_processing
   owner: bgruening
   revisions:
-  - 74a8bef53a00
-  - d698c222f354
-  - 9ff72e942410
   - ddf54b12c295
+  - 9ff72e942410
+  - 74a8bef53a00
   - a6f147a050a2
+  - d698c222f354
   - f46f0e4f75c4
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/variant_calling.yml b/usegalaxy.org.au/variant_calling.yml
index d8f5572d0..3f0323a32 100644
--- a/usegalaxy.org.au/variant_calling.yml
+++ b/usegalaxy.org.au/variant_calling.yml
@@ -2,9 +2,9 @@ tools:
 - name: breseq
   owner: iuc
   revisions:
-  - 85c57cc9b558
-  - 82fb5e3bb93e
   - 0d18a3ba2d1c
+  - 82fb5e3bb93e
+  - 85c57cc9b558
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cutesv
@@ -17,9 +17,9 @@ tools:
   owner: devteam
   revisions:
   - 156b60c1530f
+  - ef2c525bd8cd
   - 57def2d7c093
   - a5937157062f
-  - ef2c525bd8cd
   - 04fa42777df9
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -27,29 +27,29 @@ tools:
   owner: iuc
   revisions:
   - 435b157bed6d
+  - 09d6e4693887
   - e61c9ac190ad
   - 791f73caa0c8
-  - 09d6e4693887
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_call
   owner: iuc
   revisions:
   - 074d44697036
+  - e1461b5c52a0
+  - dfadc322b065
   - 3b4b2121842f
+  - 65432c3abf6c
   - 4805fe3d8fda
   - 03627f24605f
-  - 65432c3abf6c
-  - dfadc322b065
-  - e1461b5c52a0
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_filter
   owner: iuc
   revisions:
-  - 9cb929f21cfa
   - 7dfca164d2e3
   - 701d134358ad
+  - 9cb929f21cfa
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_indelqual
@@ -64,9 +64,9 @@ tools:
 - name: lofreq_viterbi
   owner: iuc
   revisions:
-  - cdaab621d454
   - aa35ee7f3ab2
   - dbd9f2db9ed8
+  - cdaab621d454
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: naive_variant_caller
@@ -84,9 +84,9 @@ tools:
 - name: snippy
   owner: iuc
   revisions:
-  - 5bbf9eada9c2
   - d220115f882b
   - fa016f1eea1a
+  - 5bbf9eada9c2
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snp_dists
@@ -123,18 +123,18 @@ tools:
   owner: iuc
   revisions:
   - 3b1e7c170b10
-  - ee4a90760848
   - e7aff4a85df5
   - 40f0591deda0
+  - ee4a90760848
   - 32f14a2723ec
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbvcfreport
   owner: iuc
   revisions:
-  - 4934c0ac6197
   - 02d81b994ef5
   - adc0645b945c
+  - 4934c0ac6197
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: varscan_somatic
diff --git a/usegalaxy.org.au/vcfbcf.yml b/usegalaxy.org.au/vcfbcf.yml
index ef95dac3d..21018bccd 100644
--- a/usegalaxy.org.au/vcfbcf.yml
+++ b/usegalaxy.org.au/vcfbcf.yml
@@ -2,70 +2,70 @@ tools:
 - name: bcftools_annotate
   owner: iuc
   revisions:
-  - e075b1be5abb
-  - ebe5fc018e72
+  - 265fe0f9ea64
   - b7ea370b8f5d
   - 8a2e296c07ef
-  - 6a88248893c4
-  - 265fe0f9ea64
   - 3f62d4939d54
+  - 6a88248893c4
+  - ebe5fc018e72
+  - e075b1be5abb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_call
   owner: iuc
   revisions:
-  - 544cb432072b
-  - f0d44631365f
-  - c37b684e7f4e
-  - b03984136ce4
   - 21687e35f066
   - 0fba2c15b40d
+  - c37b684e7f4e
+  - b03984136ce4
   - 22637b1a55bf
+  - 544cb432072b
+  - f0d44631365f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_cnv
   owner: iuc
   revisions:
-  - bf1f4994f104
-  - 8408bffd5616
+  - 3a7084316a6e
+  - 8ca3647c90fd
   - 6d35a3780bfd
+  - bf1f4994f104
   - 8627b2b383b4
   - 01d6b7d6365e
-  - 3a7084316a6e
+  - 8408bffd5616
   - 0238f68ad641
-  - 8ca3647c90fd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_concat
   owner: iuc
   revisions:
-  - 08296952d12f
-  - 03e0645395d2
   - 6b6c992d3a14
-  - 9b5abbf50d23
+  - 03e0645395d2
+  - 08296952d12f
   - 81426b3cf18b
   - d144af39073a
+  - 9b5abbf50d23
   - f430a1ec7ee4
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_consensus
   owner: iuc
   revisions:
-  - e522022137f6
-  - 95c6f3f4c77f
-  - 2363ef414c9b
-  - d3081540d175
   - 1829900b5dcd
   - d37e313a41be
   - 147de996e34f
+  - 2363ef414c9b
+  - 95c6f3f4c77f
+  - d3081540d175
+  - e522022137f6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_from_vcf
   owner: iuc
   revisions:
   - 1137ce8efc1e
-  - 9b29129fb491
   - cacc9970727a
+  - 9b29129fb491
   - 09f37afb3621
   - 348cd212dbad
   - 92c0aff8b53e
@@ -75,45 +75,45 @@ tools:
 - name: bcftools_convert_to_vcf
   owner: iuc
   revisions:
-  - 55c0e906c14c
-  - de68c11034f6
-  - 367ba501b6eb
-  - ecc9192912b8
   - 1f2183a23823
+  - ecc9192912b8
   - 4935320a59a8
+  - 55c0e906c14c
+  - 367ba501b6eb
+  - de68c11034f6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_csq
   owner: iuc
   revisions:
-  - 6c790a091c7c
   - ae68ceb4cca3
+  - 039ea3f1dea9
+  - 6c790a091c7c
   - 64a8f7dae3ad
   - f01b2c9506b9
-  - 039ea3f1dea9
   - 7cbf3c66d4ad
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_filter
   owner: iuc
   revisions:
-  - 6ea7170a016d
-  - 33bd9301568c
-  - cdb7b4927742
   - 963a3635b2e1
-  - 656a916779fe
   - 277719af4dd7
+  - cdb7b4927742
+  - 33bd9301568c
   - e7452697afd9
+  - 6ea7170a016d
+  - 656a916779fe
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_gtcheck
   owner: iuc
   revisions:
-  - 26d97cdd5410
-  - 3eac729e66c9
   - 5a321fab1fe4
-  - 501bfb078342
   - a29a2f40b665
+  - 26d97cdd5410
+  - 501bfb078342
+  - 3eac729e66c9
   - a1213a0b7b66
   - b7f0f59baa7e
   tool_panel_section_label: VCF/BCF
@@ -121,83 +121,83 @@ tools:
 - name: bcftools_isec
   owner: iuc
   revisions:
-  - 63aabc920911
-  - 5f27e814a119
-  - d7d1663559e9
   - 768d04526638
   - c803c34361e0
+  - 63aabc920911
   - 97d19c008d15
   - 709dd8291b83
   - 81e4014fa809
+  - 5f27e814a119
+  - d7d1663559e9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_merge
   owner: iuc
   revisions:
-  - 7ba36babba2d
-  - 86296490704e
-  - af163c712539
   - 2215287d5cc9
   - b931e65638b8
-  - b1eba148b35b
+  - 7ba36babba2d
+  - af163c712539
   - 85ee7e6c4204
+  - b1eba148b35b
+  - 86296490704e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_mpileup
   owner: iuc
   revisions:
-  - 31ea13dfe5e6
+  - f506df85c652
+  - 5660b21a0dbd
   - cf06b44624c7
+  - 03191140c66a
+  - 31ea13dfe5e6
+  - 37757ffb4c5f
   - 9c711df3258d
-  - f506df85c652
   - ce9396ddcb2b
-  - 37757ffb4c5f
-  - 03191140c66a
-  - 5660b21a0dbd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_norm
   owner: iuc
   revisions:
+  - 6deb4d549bc9
   - 19905c025d2a
   - 021693fdadaa
-  - 6deb4d549bc9
-  - a404f786a94c
-  - 48291658fdf6
   - ebb2e12a6de1
+  - 48291658fdf6
+  - a404f786a94c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_counts
   owner: iuc
   revisions:
+  - 69d8b7567281
   - 71c78e0eea52
   - c450406f722b
   - be6b217710af
   - f7879f1e77f9
-  - 5ad5d4243987
-  - 69d8b7567281
   - 97e8145d7e30
+  - 5ad5d4243987
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_dosage
   owner: iuc
   revisions:
-  - 0fe007201caf
+  - 89720ec3d58e
   - 79f7a1acc2cd
-  - d31a2e310a52
-  - cc7f9a4e186b
   - 2514e684f8a3
+  - d31a2e310a52
   - 52f9e4a660e3
-  - 89720ec3d58e
+  - 0fe007201caf
+  - cc7f9a4e186b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_an_ac
   owner: iuc
   revisions:
-  - 1411bef27a75
   - 026a989b7cee
-  - 230e424bde67
   - 99f4a81a47be
+  - 230e424bde67
+  - 1411bef27a75
   - 80e6e399ccd0
   - 0a62420cb9cd
   - 75ddd081f608
@@ -206,165 +206,165 @@ tools:
 - name: bcftools_plugin_fill_tags
   owner: iuc
   revisions:
-  - c01be0ab9806
+  - 5acfca5a76af
   - 444e6a756c35
   - 5808f77b2bb6
+  - ba20340426fe
   - bca7ce81688f
+  - c01be0ab9806
   - e493702b19eb
-  - ba20340426fe
-  - 5acfca5a76af
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fixploidy
   owner: iuc
   revisions:
-  - 68fec03a63b7
   - 12152af85697
-  - 157ffcdd3fa7
   - 7fe09ad6a939
+  - 157ffcdd3fa7
   - f2482aa4862e
   - d52b8947b269
+  - 68fec03a63b7
   - 4d236c696844
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_impute_info
   owner: iuc
   revisions:
-  - 8dbce095986c
-  - cbe39e530cbf
-  - 0e5d11004815
   - 27e2611639a9
+  - 0e5d11004815
   - 6f8e223f78f3
-  - 29ba253e2e05
   - 8f2fc0ab30fb
+  - 8dbce095986c
+  - 29ba253e2e05
+  - cbe39e530cbf
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_mendelian
   owner: iuc
   revisions:
-  - af36eb5418fe
-  - e0a856def0b0
-  - a367a15c6de5
-  - 88bb477f45f7
-  - a8630d4fbaf8
   - 3ff5654b4e7d
+  - a367a15c6de5
   - 9708e3086f32
+  - a8630d4fbaf8
+  - 88bb477f45f7
+  - af36eb5418fe
+  - e0a856def0b0
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_missing2ref
   owner: iuc
   revisions:
   - 6ce175385dd9
-  - 5c9729d54721
+  - 2f4eef1f0d22
   - 03e30f06f15f
+  - 96d0145c041a
+  - 5c9729d54721
   - 4ed46189d6c6
   - 31c096c6b156
-  - 2f4eef1f0d22
-  - 96d0145c041a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_setgt
   owner: iuc
   revisions:
-  - 46eb13bc2c73
+  - 09f5e45a8212
   - 40daf124be88
+  - a1aad8b559c6
+  - 262bba5b90ef
   - 2c4941386820
   - 11af7fce71cf
-  - 262bba5b90ef
-  - a1aad8b559c6
-  - 09f5e45a8212
+  - 46eb13bc2c73
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_tag2tag
   owner: iuc
   revisions:
-  - 12038f59c0f4
-  - 882b2e649602
+  - 8cb121b6a1d2
   - 743cd1472aeb
-  - 4b796b58938b
-  - 6cbb9c47795c
+  - 882b2e649602
   - f272b8ba0983
-  - 8cb121b6a1d2
+  - 12038f59c0f4
   - 0594ea1417c8
+  - 4b796b58938b
+  - 6cbb9c47795c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query_list_samples
   owner: iuc
   revisions:
-  - 18cf9de1cf73
-  - dba06328556a
   - cced6715f926
-  - 238f78e38a8b
   - 8c3ff4ef1190
   - adee7e8b746f
   - eccb508bb678
+  - dba06328556a
+  - 18cf9de1cf73
+  - 238f78e38a8b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query
   owner: iuc
   revisions:
+  - 3ce32adc55b2
+  - c9935c9e8a24
   - e53501abf992
   - a850902cac64
-  - 9f36041495a3
   - e0ad88dec40d
-  - c9935c9e8a24
+  - 9f36041495a3
   - f64e7ca2efd2
-  - 3ce32adc55b2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_reheader
   owner: iuc
   revisions:
-  - 79489d5685dd
-  - fd3539749127
   - d43eb39b989e
-  - b7be725976b6
+  - fd3539749127
   - 8057cf55fa41
-  - 4db0695a6fc7
   - d68c43202172
+  - 4db0695a6fc7
+  - 79489d5685dd
+  - b7be725976b6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_roh
   owner: iuc
   revisions:
   - bdc67eeb0bc9
+  - 78cd8b69da4c
   - 58091e1be01b
-  - 5296d26b0373
+  - 6a636d58dfc2
   - 1ccf0e7fb4f6
   - b0d39ef600a7
-  - 6a636d58dfc2
-  - 78cd8b69da4c
+  - 5296d26b0373
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_stats
   owner: iuc
   revisions:
+  - b641062a2587
   - e8af591435d1
+  - a2f8dc22d7c0
   - baa8823f8073
-  - '388983871932'
   - b17394940c7a
-  - a2f8dc22d7c0
-  - b641062a2587
+  - '388983871932'
   - 4d3ce9dc1525
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_view
   owner: iuc
   revisions:
+  - 3ca3de4e5291
+  - 3a233c8eb814
   - 59fa8742285e
   - abc3ced31cd1
-  - d1f8f55f564d
   - e6b5cbbf449b
-  - 3a233c8eb814
-  - 3ca3de4e5291
+  - d1f8f55f564d
   - 38d75661c235
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2tsv
   owner: devteam
   revisions:
-  - 285060661b45
   - e92b3c0f9224
+  - 285060661b45
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfaddinfo
@@ -384,29 +384,29 @@ tools:
 - name: vcfannotate
   owner: devteam
   revisions:
-  - 01e0321aca98
   - 6faa2c4c71d2
+  - 01e0321aca98
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotategenotypes
   owner: devteam
   revisions:
-  - 70bc6ced57f7
   - 84959112d9a6
+  - 70bc6ced57f7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbedintersect
   owner: devteam
   revisions:
-  - 9edfe5145ba8
   - aea8e90ad788
+  - 9edfe5145ba8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbreakcreatemulti
   owner: devteam
   revisions:
-  - 690b1d846263
   - 9fd5d91eb91b
+  - 690b1d846263
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcheck
@@ -419,22 +419,22 @@ tools:
 - name: vcfcombine
   owner: devteam
   revisions:
-  - 1f0ba67cc85a
   - 53edb91ed051
+  - 1f0ba67cc85a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcommonsamples
   owner: devteam
   revisions:
-  - f1852ecef841
   - 254f285dbaaa
+  - f1852ecef841
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfdistance
   owner: devteam
   revisions:
-  - 48e458c721b3
   - 5822b40f3037
+  - 48e458c721b3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffilter
@@ -497,8 +497,8 @@ tools:
 - name: vcfrandomsample
   owner: devteam
   revisions:
-  - 6257ee3b50d3
   - 12b570dd0bc5
+  - 6257ee3b50d3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfselectsamples
@@ -524,7 +524,7 @@ tools:
 - name: vcfvcfintersect
   owner: devteam
   revisions:
-  - 166c4f50525f
   - 6f6bf10618d7
+  - 166c4f50525f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/viral_tools.yml b/usegalaxy.org.au/viral_tools.yml
index 15250eab7..06370d956 100644
--- a/usegalaxy.org.au/viral_tools.yml
+++ b/usegalaxy.org.au/viral_tools.yml
@@ -2,7 +2,7 @@ tools:
 - name: quasitools
   owner: nml
   revisions:
-  - 9def47f3c1e4
   - 18aad692772a
+  - 9def47f3c1e4
   tool_panel_section_label: Viral Tools
   tool_shed_url: toolshed.g2.bx.psu.edu