diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
index 4db6e1399..fde8fc17c 100644
--- a/automated_tool_installation_log.tsv
+++ b/automated_tool_installation_log.tsv
@@ -7952,3 +7952,9 @@ Install	1680	16/10/24 00:33:54	humann	False	Installed	iuc	c2803012bbb3	c2803012b
 Install	1680	16/10/24 00:34:51	humann_regroup_table	False	Installed	iuc	8237a0f225db	8237a0f225db				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
 Install	1680	16/10/24 00:35:46	humann_rename_table	False	Installed	iuc	aabf8cfb8fef	aabf8cfb8fef				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
 Install	1680	16/10/24 00:52:32	recentrifuge	False	Installed	iuc	591175c0f051	591175c0f051				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Update	214	16/10/24 01:42:23	cutesv	False	Tests failed	iuc	cb441f258c37	cb441f258c37	Staging Testing	1/2		Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_214/install_log.txt
+Update	214	16/10/24 01:56:14	fastp	False	Installed	iuc	dbfc505896e9	dbfc505896e9		15/15		FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_214/install_log.txt
+Update	214	16/10/24 02:52:48	freebayes	False	Tests failed	devteam	3e954e7125bf	3e954e7125bf	Staging Testing	1/9		Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_214/install_log.txt
+Update	214	16/10/24 03:30:19	gfastats	False	Installed	bgruening	6ec1b853c8fd	6ec1b853c8fd		13/13		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_214/install_log.txt
+Update	214	16/10/24 03:54:25	ggplot2_heatmap2	False	Installed	iuc	51c6ccaace7e	51c6ccaace7e		7/7		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_214/install_log.txt
+Update	214	16/10/24 03:55:07	iqtree	False	Installed	iuc	f87ac61981f0	f87ac61981f0				Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_214/install_log.txt
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
index 7cad5732b..05b5c1416 100644
--- a/staging.gvl.org.au/annotation.yml
+++ b/staging.gvl.org.au/annotation.yml
@@ -2,32 +2,32 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
+  - 6e9aea89e388
+  - 78c75f134c16
   - 3f3e247c053d
   - 4efdca267d51
-  - 6e9aea89e388
   - c2ef298da409
-  - 78c75f134c16
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 8dc7512c9dc9
   - 1dd7adc21b6d
+  - 8dc7512c9dc9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
   owner: iuc
   revisions:
-  - 1fdc517743e6
   - c4ac24510b55
+  - 1fdc517743e6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_parseval
@@ -41,56 +41,56 @@ tools:
   owner: iuc
   revisions:
   - 3e1f6f6d557e
-  - b5d8e5475247
-  - 1aae04680c4b
-  - fe3ca740a485
-  - 44018dd6b447
   - a79ee60b6926
   - f29602ae449e
+  - b5d8e5475247
+  - fe3ca740a485
   - cd2480f35935
   - 133f36c29579
+  - 44018dd6b447
   - 4f2967b27e67
+  - 1aae04680c4b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - bc88856eddab
   - e78e25d3b4bd
+  - bc88856eddab
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
-  - 6519ebe25019
   - f1e653756174
   - 7be22100e5e1
+  - 6519ebe25019
+  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
+  - 09855551d713
+  - 28433faa6e42
   - ca6d970d931c
   - bd0e53f3a891
-  - 28433faa6e42
-  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
+  - 92eee5f31117
   - d77802fe76f7
   - 728dacaf08a9
-  - 92eee5f31117
   - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - 8fd427007e93
   - 7355bbf5e05f
+  - 8fd427007e93
   - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -103,8 +103,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -116,17 +116,17 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
-  - 8e9e228c54c4
   - 7ccc6234b54e
+  - 8e9e228c54c4
   - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
+  - d9c3016f7283
   - 63662ae295d6
   - 9d1fbff733cf
-  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -150,61 +150,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - 9f2455341fac
   - 9c15ca7e764e
   - b6b5cd37f2a2
-  - 9f2455341fac
+  - 582fd74dc2a1
   - 14f588312c56
   - 3bbe70fef6df
-  - 582fd74dc2a1
   - 756376aeb1ae
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 1691af4a0d17
   - 989f7c061f35
-  - a230ea445788
+  - 30fb23d4c31c
   - 73428a792541
   - 8e1ace8f77c6
-  - 30fb23d4c31c
   - 0ffe5be70caf
+  - 1691af4a0d17
+  - a230ea445788
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 30f08d74024f
-  - 5a5ae61da69c
-  - 494f0bb4a993
   - e94187d661df
+  - 494f0bb4a993
+  - 5a5ae61da69c
   - 0418d28136de
   - 57c6718cbfcc
   - 563a19373357
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - d6c7106b7b2e
   - f31125bb85ea
+  - d6c7106b7b2e
   - 7abc5f6dd595
   - f77d7b685bb3
+  - 2bba2ff070d9
   - 1bc5a03faf2e
   - 4b96ced19f75
-  - 2bba2ff070d9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - d77fdcca400e
-  - 54961e026fe4
-  - fed64e676186
-  - b3cf4684e9c7
-  - d3af38b9c7e1
   - 520e30695ec3
+  - d3af38b9c7e1
+  - b3cf4684e9c7
+  - d77fdcca400e
   - 52af33194019
+  - fed64e676186
+  - 54961e026fe4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -216,9 +216,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 2aea122fbd25
   - 79261884facd
   - 07d7991bf205
-  - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -230,9 +230,9 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 43798b4caee0
   - ef2ad746b589
   - 8b3e3657034e
+  - 43798b4caee0
   - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -257,8 +257,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -284,26 +284,26 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
+  - d46d803ca6cc
   - 370c210d9541
   - 3c1a01127868
-  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
+  - e95d52d295d7
   - 033755194fe9
-  - c8ac28e8ac44
   - b815ec682418
-  - e95d52d295d7
+  - c8ac28e8ac44
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -345,11 +345,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
   - a17498c603ec
-  - 8a22554cdde2
   - eaee459f3d69
+  - bf68eb663bc3
   - d643e3b03500
+  - 8a22554cdde2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -368,8 +368,8 @@ tools:
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 41bfbaf3c959
   - 8661b2607b7e
+  - 41bfbaf3c959
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -393,22 +393,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 68693743661e
+  - 6322be79bd8e
+  - 5c7b70713fb5
   - cfcf33df7fc0
-  - 8f92c2b26e6d
   - 268d162b9c49
-  - 6322be79bd8e
+  - 8f92c2b26e6d
   - 5b80f544c67f
+  - 68693743661e
   - 5a29ab10dba6
-  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
-  - 5fab4f81391d
   - 2b3e65a4252f
+  - 5fab4f81391d
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -433,24 +433,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 037a11682176
-  - ba6f87115e13
   - d03af1c7002c
-  - 37213cf56392
+  - 809dfc93d593
+  - 037a11682176
   - 4839e590cb26
-  - e1a9d6fd258d
-  - 200c378d85f3
+  - 37213cf56392
+  - 51dd22484644
   - 45083d070fb8
+  - e1a9d6fd258d
+  - ba6f87115e13
   - ac8250086ac3
-  - 809dfc93d593
-  - 51dd22484644
+  - 200c378d85f3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm
diff --git a/staging.gvl.org.au/assembly.yml b/staging.gvl.org.au/assembly.yml
index 08b406c05..18c258e39 100644
--- a/staging.gvl.org.au/assembly.yml
+++ b/staging.gvl.org.au/assembly.yml
@@ -2,44 +2,44 @@ tools:
 - name: abyss
   owner: iuc
   revisions:
+  - a929ce596a34
+  - 8f1b150a2487
+  - 841084c5fc46
+  - d6d5ccc2c581
+  - 7547fcab5d19
   - 0e93176640ac
   - 553bfe8bd0b5
-  - 890b794c997d
-  - d6d5ccc2c581
   - fa5259cc561b
-  - 8f1b150a2487
+  - 890b794c997d
   - 0124fce4654a
-  - a929ce596a34
-  - 7547fcab5d19
-  - 841084c5fc46
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bandage
   owner: iuc
   revisions:
+  - 21e491ad532a
   - 067592b6b312
-  - 94fe43e75ddc
-  - b9e31c5c01c7
   - b2860df42e16
-  - 21e491ad532a
   - ddddce450736
+  - b9e31c5c01c7
+  - 94fe43e75ddc
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bellerophon
   owner: iuc
   revisions:
-  - 321347bd0494
   - 25ca5d73aedf
+  - 321347bd0494
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bionano_scaffold
   owner: bgruening
   revisions:
-  - 22286dab5aa1
   - a7f16f24e9a1
+  - 22286dab5aa1
   - 3371c5bdc17a
-  - faee8629b460
   - 5258e18bbe23
+  - faee8629b460
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blobtoolkit
@@ -52,23 +52,23 @@ tools:
 - name: busco
   owner: iuc
   revisions:
+  - bb935709506a
+  - 46ae58b1d792
+  - 5ecdeca79a0d
+  - 94170eee0ad8
+  - 2dd755c1c6ff
+  - e824f5d958d0
+  - 41030a6c03b7
+  - cf13a1e03e5b
+  - 602fb8e63aa7
+  - e4bd1e99bacf
   - 1e62c28ba91d
+  - 1440ae06552f
   - ea8146ee148f
-  - 2dd755c1c6ff
-  - 5ecdeca79a0d
-  - 46ae58b1d792
-  - f18f0b887c31
-  - bb935709506a
   - 0d243f458b53
   - 4048d82f0c88
-  - 1440ae06552f
-  - 94170eee0ad8
+  - f18f0b887c31
   - 2babe6d5c561
-  - 41030a6c03b7
-  - e4bd1e99bacf
-  - 602fb8e63aa7
-  - e824f5d958d0
-  - cf13a1e03e5b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: canu
@@ -88,42 +88,43 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
-  - 3e4f8642c77e
-  - e27815e82dd4
-  - 291923e6f276
   - 3ee0ef312022
-  - cb8dfd28c16f
-  - 276f5d8712d5
+  - 291923e6f276
   - 1f0769f0b56b
-  - 1ce9b1d72ec3
+  - cb8dfd28c16f
   - 8d4f03b5fe9d
+  - 1ce9b1d72ec3
+  - 276f5d8712d5
+  - 3e4f8642c77e
+  - e27815e82dd4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genomescope
   owner: iuc
   revisions:
-  - 460fad600dce
-  - b2f674562a18
-  - 01210c4e9144
   - 3169a38c2656
+  - 01210c4e9144
+  - b2f674562a18
+  - 460fad600dce
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: getorganelle
   owner: iuc
   revisions:
-  - 7348b69e5109
+  - ba88bc5a6446
   - 8b330a577046
+  - 7348b69e5109
   - 06bcf65179fb
-  - ba88bc5a6446
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfastats
   owner: bgruening
   revisions:
   - 3fba9c77550a
-  - 3ef480892a9f
-  - 690c2caa367e
+  - 6ec1b853c8fd
   - 5127a713de83
+  - 690c2caa367e
+  - 3ef480892a9f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hapcut2
@@ -135,23 +136,23 @@ tools:
 - name: hifiasm
   owner: bgruening
   revisions:
-  - 0ee0c3089254
-  - f3c89da3af16
-  - 6505bd37670d
+  - 366a11d316a7
+  - 71740308d412
   - 045c7c3d8e59
+  - 0ee0c3089254
+  - 41cea2aa2dce
+  - 284a1cb82b61
+  - ec9e21e9c71b
+  - 9ef6920c3089
   - da9d8bf98802
-  - 71740308d412
   - 3f7be05a1597
-  - 41cea2aa2dce
-  - 366a11d316a7
-  - 2061fb3b81b4
   - 5f625c63b8bc
+  - 2061fb3b81b4
   - 60024a528cbd
-  - ec9e21e9c71b
+  - 6505bd37670d
+  - f3c89da3af16
   - 5bec28269d95
-  - 9ef6920c3089
   - df25d4fb79b7
-  - 284a1cb82b61
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: links
@@ -178,12 +179,12 @@ tools:
 - name: merqury
   owner: iuc
   revisions:
+  - 09c589057ee8
   - f8113c25bc6b
   - 39edec572bae
-  - 09c589057ee8
-  - eb7b00ec347d
   - 9d79beb19ac3
   - d7edbc9c3a07
+  - eb7b00ec347d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: meryl
@@ -197,15 +198,15 @@ tools:
 - name: metaspades
   owner: nml
   revisions:
+  - 3ca2d2a9068c
   - 606b09cc9860
+  - fd128c111ab0
+  - e731ea24e48d
+  - eb7a370f6588
   - 99ecfdafc64f
-  - f369ef5f210b
-  - 3ca2d2a9068c
   - 2ecf5a570907
-  - eb7a370f6588
   - f338e9942b27
-  - e731ea24e48d
-  - fd128c111ab0
+  - f369ef5f210b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minia
@@ -218,9 +219,9 @@ tools:
   owner: iuc
   revisions:
   - 8b6d0d85252b
-  - b799a615995d
   - a7b889b90140
   - 8dee0218ac7d
+  - b799a615995d
   - 73a3846701e1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -239,9 +240,9 @@ tools:
 - name: novoplasty
   owner: iuc
   revisions:
+  - 64a1c751d99b
   - 7c2f5268d01c
   - 15200570e926
-  - 64a1c751d99b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pilon
@@ -253,43 +254,43 @@ tools:
 - name: pretext_map
   owner: iuc
   revisions:
+  - 2b16ba799da9
+  - dfb8a4497339
   - d256a51a656b
+  - 02831bf9e95f
+  - 8fef980d48b5
   - 79b48f02db49
   - bbe19ef04a74
-  - dfb8a4497339
-  - 8fef980d48b5
-  - 2b16ba799da9
-  - 02831bf9e95f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: purge_dups
   owner: iuc
   revisions:
-  - 76d4cbefff85
   - a315c25dc813
   - e9bd16ba5ebd
+  - 76d4cbefff85
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: quast
   owner: iuc
   revisions:
-  - 6fcbee531de6
-  - 3061c8b029e5
-  - 342a1d1fed7b
+  - 7594365c546b
   - 875d0f36d66f
-  - 59db8ea8c845
-  - ebb0dcdb621a
-  - 675488238c96
+  - 342a1d1fed7b
   - 72472698a2df
-  - 7594365c546b
+  - 675488238c96
+  - ebb0dcdb621a
+  - 59db8ea8c845
+  - 6fcbee531de6
+  - 3061c8b029e5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: racon
   owner: bgruening
   revisions:
   - a199cd7ac344
-  - d865b62f501c
   - 78c533842eeb
+  - d865b62f501c
   - aa39b19ca11e
   - cd06929b224b
   - 39bed8de8017
@@ -310,12 +311,12 @@ tools:
 - name: raven
   owner: iuc
   revisions:
+  - 5c55448d0f33
   - f8564b2d7f63
-  - 2b2a352488fa
-  - f11b994b7eb2
   - 3edba9afc9bc
-  - 5c55448d0f33
   - 33b7d8481a76
+  - 2b2a352488fa
+  - f11b994b7eb2
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnaquast
@@ -328,13 +329,13 @@ tools:
 - name: rnaspades
   owner: iuc
   revisions:
-  - 5fc94b3a4704
-  - 378e55aeeb25
   - 28189050e437
-  - e122f9101584
   - 53c2bc8c2ae3
   - ef69617ecb42
+  - 5fc94b3a4704
   - 1d06c8b38e77
+  - 378e55aeeb25
+  - e122f9101584
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: shasta
@@ -346,21 +347,21 @@ tools:
 - name: shovill
   owner: iuc
   revisions:
-  - d9f6a00b6db7
-  - f698c7604b3b
   - ee17a294d3a3
-  - 865119fcb694
   - 83ead2be47b2
+  - d9f6a00b6db7
   - ad80238462c1
   - 196a599ec43d
+  - f698c7604b3b
+  - 865119fcb694
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: smudgeplot
   owner: galaxy-australia
   revisions:
   - 24e471d13fe9
-  - 015283de3004
   - 5e0825476fb7
+  - 015283de3004
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_biosyntheticspades
@@ -368,68 +369,68 @@ tools:
   revisions:
   - 604782a8a53a
   - c33a476f4001
-  - 7490b213baa9
-  - 904bf932cf78
   - 1fc82fe7ebef
-  - 051fd2db8a27
+  - 7490b213baa9
   - 1bb12736175c
+  - 051fd2db8a27
+  - 904bf932cf78
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_coronaspades
   owner: iuc
   revisions:
-  - 655fa188c3cc
+  - 34305b013402
+  - ad8b536d1caa
   - 9678993ca5bd
   - d6e617c4e338
-  - fee85957cebe
-  - 34305b013402
+  - 655fa188c3cc
   - 808b3a0a6716
-  - ad8b536d1caa
+  - fee85957cebe
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaplasmidspades
   owner: iuc
   revisions:
-  - e5a3b75a271f
-  - b8002c3f7141
+  - 21da31ed41a1
+  - 037f9927c4ff
   - 8d4b90bf9caf
+  - e5a3b75a271f
   - 7e27faaad80e
   - 6b5a5842531e
-  - 21da31ed41a1
-  - 037f9927c4ff
+  - b8002c3f7141
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaviralspades
   owner: iuc
   revisions:
-  - f1532cb33c75
-  - 5b26685e5d3b
-  - 7922870efcca
-  - 9de69775f512
-  - 328aa71f0f3c
   - 86f66ab58e14
   - 2a10645aeadd
+  - 328aa71f0f3c
+  - 5b26685e5d3b
+  - f1532cb33c75
+  - 9de69775f512
+  - 7922870efcca
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_plasmidspades
   owner: iuc
   revisions:
-  - 6aad515a5270
-  - 85fb02c43042
   - 8cc856b935ee
-  - 1708851f8804
-  - 340bc17f49cf
+  - 85fb02c43042
   - e41dcb0e913b
+  - 340bc17f49cf
+  - 1708851f8804
+  - 6aad515a5270
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_rnaviralspades
   owner: iuc
   revisions:
-  - de1260f8a300
-  - d159735a6a9f
-  - d5fb354f745d
   - b65a43f70b99
+  - d5fb354f745d
   - 6357b127161e
+  - d159735a6a9f
+  - de1260f8a300
   - 249f6a28c751
   - b3490b036c5a
   tool_panel_section_label: Assembly
@@ -437,57 +438,57 @@ tools:
 - name: spades
   owner: nml
   revisions:
-  - 33368fec3b70
+  - 7897763d14ec
   - d5887ace0dd4
-  - d2d1df21dfb9
   - a90db5dbaaf3
-  - dd7ad84f3943
-  - 9006e5836729
-  - 7897763d14ec
   - b7829778729f
+  - d2d1df21dfb9
+  - 9006e5836729
+  - dd7ad84f3943
+  - 33368fec3b70
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_cluster
   owner: iuc
   revisions:
   - 6f4c8ad6ea01
-  - ced385aa976d
-  - 189e837009c9
   - 8f631679571f
-  - ed2425b9fd27
   - 505a9833ab5d
+  - ed2425b9fd27
+  - ced385aa976d
+  - 189e837009c9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_consensus
   owner: iuc
   revisions:
-  - 9ded6109434a
-  - 19bdfd1e6fe3
   - d40ed4eb0c0e
-  - 356afed970b4
-  - e59bee4565b3
+  - 19bdfd1e6fe3
   - f31d376ce725
+  - e59bee4565b3
+  - 356afed970b4
+  - 9ded6109434a
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_partition
   owner: iuc
   revisions:
-  - ebd801e712bc
-  - 6dd935e4984b
   - 80a17897564d
-  - 4688ae3b49b5
+  - 6dd935e4984b
   - af40e971a8cc
+  - ebd801e712bc
   - b23249f81bc4
+  - 4688ae3b49b5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_reconcile_msa
   owner: iuc
   revisions:
-  - 59bd28f6265d
   - b64696992ee9
-  - cb1e3db43020
   - 937ea677d437
+  - cb1e3db43020
   - b5e35a2ca4f3
+  - 59bd28f6265d
   - bb11fefb23a3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -495,42 +496,42 @@ tools:
   owner: iuc
   revisions:
   - cb4768eeca3b
+  - 05bd7504fdb2
   - 2628f6790eda
-  - 6bfab4a4a988
   - 6015aa0303f2
-  - 05bd7504fdb2
+  - 6bfab4a4a988
   - 383bb5ad32e2
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unicycler
   owner: iuc
   revisions:
-  - 6e26c9afd301
-  - 8f9f06995f98
-  - e92675014ac9
-  - 3e44ef016b45
   - e022dff952df
+  - 3e44ef016b45
   - 9e3e80cc4ad4
+  - e92675014ac9
+  - 6e26c9afd301
+  - 8f9f06995f98
   - 0a3a602cd1e3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvet
   owner: devteam
   revisions:
-  - 920677cd220f
-  - 08256557922f
   - 8d09f8be269e
   - 5da9a0e2fb2d
+  - 08256557922f
+  - 920677cd220f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvetoptimiser
   owner: simon-gladman
   revisions:
-  - 4a53b89fa703
-  - 0e2b4e3f9ca1
-  - 82398ba86ba7
   - 37d88f41c810
+  - 82398ba86ba7
+  - 4a53b89fa703
   - d81360ea69d8
+  - 0e2b4e3f9ca1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: verkko
diff --git a/staging.gvl.org.au/bacterial_typing.yml b/staging.gvl.org.au/bacterial_typing.yml
index 0120a4256..7ee623f02 100644
--- a/staging.gvl.org.au/bacterial_typing.yml
+++ b/staging.gvl.org.au/bacterial_typing.yml
@@ -2,10 +2,10 @@ tools:
 - name: integron_finder
   owner: iuc
   revisions:
-  - 4768f7f8e93f
-  - bfd290fe1588
-  - 392f100eebcd
   - 1ae00120dd24
+  - 392f100eebcd
+  - bfd290fe1588
+  - 4768f7f8e93f
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: islandpath
@@ -17,17 +17,17 @@ tools:
 - name: mlst
   owner: iuc
   revisions:
+  - ded48b36f3b7
   - 1f5641a52664
   - 31812e7a1315
-  - ded48b36f3b7
   - 8e8dc9a1e3e5
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sistr_cmd
   owner: nml
   revisions:
-  - 24a7a95867b0
   - 17fcac7ddf54
   - 5c8ff92e38a9
+  - 24a7a95867b0
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/bb_tools.yml b/staging.gvl.org.au/bb_tools.yml
index 3daeec629..ce970220d 100644
--- a/staging.gvl.org.au/bb_tools.yml
+++ b/staging.gvl.org.au/bb_tools.yml
@@ -3,12 +3,12 @@ tools:
   owner: iuc
   revisions:
   - 1c427e24fb79
+  - 0840ba83860c
+  - 7beb76ffbc0f
   - a9c9d768b751
-  - d1f62024a08b
   - 204a131e47db
-  - 7beb76ffbc0f
   - 159b04e36791
-  - 0840ba83860c
+  - d1f62024a08b
   tool_panel_section_label: BB Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bbtools_bbmerge
diff --git a/staging.gvl.org.au/bed.yml b/staging.gvl.org.au/bed.yml
index 769fa19bf..c66883a27 100644
--- a/staging.gvl.org.au/bed.yml
+++ b/staging.gvl.org.au/bed.yml
@@ -2,17 +2,17 @@ tools:
 - name: bedtools
   owner: iuc
   revisions:
-  - e19bebe96cd2
-  - 589e7e57fd6d
-  - a1a923cd89e8
   - ce3c7f062223
-  - b28e0cfa7ba1
-  - 0a5c785ac6db
+  - e19bebe96cd2
   - 87ee588b3d45
+  - 64e2edfe7a2c
+  - dde39ba9c031
   - a68aa6c1204a
+  - b28e0cfa7ba1
+  - 589e7e57fd6d
   - 07e8b80f278c
-  - 64e2edfe7a2c
+  - 0a5c785ac6db
   - a8eabd2838f6
-  - dde39ba9c031
+  - a1a923cd89e8
   tool_panel_section_label: BED
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/blast.yml b/staging.gvl.org.au/blast.yml
index c2f859abe..33d80b17d 100644
--- a/staging.gvl.org.au/blast.yml
+++ b/staging.gvl.org.au/blast.yml
@@ -8,10 +8,10 @@ tools:
 - name: diamond
   owner: bgruening
   revisions:
-  - 62c9df8382c2
-  - e8ac2b53f262
-  - f921014aba5a
   - 54f751e413f4
+  - f921014aba5a
+  - e8ac2b53f262
+  - 62c9df8382c2
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: diamond
@@ -23,15 +23,15 @@ tools:
 - name: ncbi_blast_plus
   owner: devteam
   revisions:
-  - d999e774072a
-  - a52d2d93e595
-  - 5edc472ec434
-  - cbf3f518b668
   - e25d3acf6e68
-  - 2889433c7ae1
+  - a52d2d93e595
+  - acf4e47b734c
   - 0e3cf9594bb7
+  - cbf3f518b668
   - 6f386c5dc4fb
-  - acf4e47b734c
+  - 5edc472ec434
+  - 2889433c7ae1
+  - d999e774072a
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_blast_plus
@@ -43,8 +43,8 @@ tools:
 - name: taxonomy_krona_chart
   owner: crs4
   revisions:
-  - 1334cb4c6b68
   - e9005d1f3cfd
+  - 1334cb4c6b68
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: taxonomy_krona_chart
diff --git a/staging.gvl.org.au/chemicaltoolbox.yml b/staging.gvl.org.au/chemicaltoolbox.yml
index 4691b69e3..f4070495f 100644
--- a/staging.gvl.org.au/chemicaltoolbox.yml
+++ b/staging.gvl.org.au/chemicaltoolbox.yml
@@ -8,13 +8,13 @@ tools:
 - name: ambertools_acpype
   owner: chemteam
   revisions:
+  - 095ad4d096d1
   - c8cdde00b105
   - da6bd1975a71
-  - f4230f116196
-  - 27ee142314a9
   - 6ca543ec1bf8
-  - 095ad4d096d1
   - 710301bc46fa
+  - 27ee142314a9
+  - f4230f116196
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: autodock_vina_prepare_box
@@ -130,74 +130,74 @@ tools:
 - name: gmx_editconf
   owner: chemteam
   revisions:
-  - 88076940fa94
+  - 0fac8e2afc13
+  - bfb65cb551d8
   - 3b8a9d5ced85
   - 79cfd9ead848
-  - bfb65cb551d8
-  - 0fac8e2afc13
+  - 88076940fa94
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_em
   owner: chemteam
   revisions:
   - 715cd0e87781
-  - d532b7e5f64b
+  - 55918daa5651
+  - f5d979cb4b54
   - b46d4b4d995c
+  - d532b7e5f64b
   - eb6564a60136
-  - f5d979cb4b54
-  - 55918daa5651
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_energy
   owner: chemteam
   revisions:
-  - 97872d87ba80
-  - 5579659312e6
   - f26afd1b7104
-  - fdf2cc80adb5
   - d2f955aea23a
+  - fdf2cc80adb5
+  - 97872d87ba80
+  - 5579659312e6
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_merge_topology_files
   owner: chemteam
   revisions:
-  - bc31d02be922
   - d1d0efda35c0
+  - bc31d02be922
   - 319a28774da9
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_setup
   owner: chemteam
   revisions:
-  - 2c349b027a01
   - ed736e6eee39
+  - 070e3ecc3fda
   - cac1886249a2
+  - 2c349b027a01
   - 4da9ee404eab
-  - 070e3ecc3fda
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_sim
   owner: chemteam
   revisions:
-  - da8753545526
   - 2e219a2d9327
+  - 525ca7c8065f
   - d1f803b5943c
-  - 73008ef1f487
+  - c0c9a5024177
   - f197e34c33a9
+  - 73008ef1f487
+  - da8753545526
   - 807aa4c9293d
-  - 525ca7c8065f
-  - c0c9a5024177
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_solvate
   owner: chemteam
   revisions:
+  - 1809414a9454
   - c4fbab8e03c5
-  - 27ea4e1a3f95
   - 61094e01eff9
-  - 7568ae18908a
-  - 1809414a9454
   - 2c8ed1b52bf7
+  - 27ea4e1a3f95
+  - 7568ae18908a
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_trj
@@ -209,18 +209,18 @@ tools:
 - name: md_converter
   owner: chemteam
   revisions:
-  - 730ef07b90ae
-  - ccfbd956a2d3
-  - 79e8ab8f1e81
   - d7ec25187599
+  - 730ef07b90ae
   - ba83f0923369
+  - 79e8ab8f1e81
+  - ccfbd956a2d3
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mdanalysis_cosine_analysis
   owner: chemteam
   revisions:
-  - 9a3a1f698fc6
   - 48d6a6eb438b
+  - 9a3a1f698fc6
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mdanalysis_dihedral
@@ -268,10 +268,10 @@ tools:
 - name: openbabel_compound_convert
   owner: bgruening
   revisions:
-  - b59c91adeac1
   - 1400d1977e7b
-  - e6011617c748
+  - b59c91adeac1
   - 4242b4d68e9c
+  - e6011617c748
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openbabel_remduplicates
@@ -283,8 +283,8 @@ tools:
 - name: openbabel_svg_depiction
   owner: bgruening
   revisions:
-  - 7672039a0bb0
   - 75ee9c410951
+  - 7672039a0bb0
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: qcxms_getres
@@ -338,10 +338,10 @@ tools:
 - name: sucos_max_score
   owner: bgruening
   revisions:
-  - 9b48456a96fe
   - 85fad59f8168
   - bf99565cec1f
   - d4c67ced6abc
+  - 9b48456a96fe
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vmd_hbonds
diff --git a/staging.gvl.org.au/chip_seq.yml b/staging.gvl.org.au/chip_seq.yml
index f09c0f202..32b04cd44 100644
--- a/staging.gvl.org.au/chip_seq.yml
+++ b/staging.gvl.org.au/chip_seq.yml
@@ -23,18 +23,18 @@ tools:
 - name: macs21
   owner: pjbriggs
   revisions:
-  - 11cf21ee4242
   - 4124781932db
+  - 11cf21ee4242
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: macs2
   owner: iuc
   revisions:
+  - 86e2413cf3f8
   - 424aefbd7777
+  - 495a4173006f
   - 640d3af5d833
   - f5d67c722d67
-  - 86e2413cf3f8
-  - 495a4173006f
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: macs2
@@ -54,8 +54,8 @@ tools:
   owner: devteam
   revisions:
   - 5c2cc3b58c7d
-  - 74c9214cc8e6
   - 4a14714649b4
+  - 74c9214cc8e6
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sicer
diff --git a/staging.gvl.org.au/collection_operations.yml b/staging.gvl.org.au/collection_operations.yml
index 1007feb3e..6b709676d 100644
--- a/staging.gvl.org.au/collection_operations.yml
+++ b/staging.gvl.org.au/collection_operations.yml
@@ -2,24 +2,24 @@ tools:
 - name: bundle_collections
   owner: nml
   revisions:
-  - cd6da887a5f4
   - 705ebd286b57
+  - cd6da887a5f4
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collapse_collections
   owner: nml
   revisions:
-  - 90981f86000f
-  - 25136a2b0cfe
   - 830961c48e42
+  - 25136a2b0cfe
+  - 90981f86000f
   - 33151a38533a
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_column_join
   owner: iuc
   revisions:
-  - dfde09461b1e
   - 3ddd99c7efee
+  - dfde09461b1e
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: split_file_on_column
@@ -32,15 +32,15 @@ tools:
   owner: bgruening
   revisions:
   - 6cbe2f30c2d7
-  - 0046692724f9
   - 2dae863c8f42
   - baabc30154cd
+  - 0046692724f9
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unzip
   owner: imgteam
   revisions:
-  - 57f0914ddb7b
   - 38eec75fbe9b
+  - 57f0914ddb7b
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/convert_formats.yml b/staging.gvl.org.au/convert_formats.yml
index 0c7f83019..6b91c8ea4 100644
--- a/staging.gvl.org.au/convert_formats.yml
+++ b/staging.gvl.org.au/convert_formats.yml
@@ -2,8 +2,8 @@ tools:
 - name: agat
   owner: bgruening
   revisions:
-  - e7449b2c14bf
   - abba05ead5d7
+  - e7449b2c14bf
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bed_to_protein_map
@@ -15,32 +15,32 @@ tools:
 - name: biom_add_metadata
   owner: iuc
   revisions:
-  - 4a6ee918c13a
-  - 367b1ed91207
-  - 0b3c3ad92827
   - e3cbd2287f63
-  - a3b86937ead6
-  - 6ef0b5664c69
-  - ab9350a8ab4d
-  - 3b6f97e7094c
+  - 0b3c3ad92827
   - 5e1240a87bcb
   - f3a19509108a
+  - 6ef0b5664c69
+  - 4a6ee918c13a
+  - 3b6f97e7094c
+  - ab9350a8ab4d
+  - a3b86937ead6
+  - 367b1ed91207
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: biom_convert
   owner: iuc
   revisions:
   - d4d4e9febf5c
+  - 54ccb7e1f49a
+  - 33c99804a32f
+  - 72ed72122deb
+  - 501c21cce614
   - e525f9ffb9ac
-  - bd46669113b9
-  - 091bb5922a82
   - 584008e574b2
   - 1b5fc03380d4
+  - bd46669113b9
   - e177a8ea0bf1
-  - 54ccb7e1f49a
-  - 33c99804a32f
-  - 501c21cce614
-  - 72ed72122deb
+  - 091bb5922a82
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bp_genbank2gff3
@@ -59,8 +59,8 @@ tools:
 - name: fasta_to_tabular
   owner: devteam
   revisions:
-  - e7ed3c310b74
   - 7e801ab2b70e
+  - e7ed3c310b74
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_to_fasta
@@ -74,9 +74,9 @@ tools:
 - name: fastq_to_tabular
   owner: devteam
   revisions:
-  - 4b347702c4aa
   - 614a63f14adf
   - 43807a65369f
+  - 4b347702c4aa
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fml_gff3togtf
@@ -102,8 +102,8 @@ tools:
   owner: devteam
   revisions:
   - 154d00cbbf2d
-  - 4dea02886337
   - 3e436657dcd0
+  - 4dea02886337
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gtftobed12
@@ -116,13 +116,14 @@ tools:
   owner: iuc
   revisions:
   - faef2b1622a3
+  - c24014d80001
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mz_to_sqlite
   owner: galaxyp
   revisions:
-  - 705821bf30d2
   - f5c632894818
+  - 705821bf30d2
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bam_to_cram
@@ -135,26 +136,26 @@ tools:
 - name: tabular_to_fasta
   owner: devteam
   revisions:
-  - 0b4e36026794
   - 0a7799698fe5
+  - 0b4e36026794
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tabular_to_fastq
   owner: devteam
   revisions:
+  - 2dcfbbf9071a
   - 78fb18899c99
   - 68f57cc8fad0
-  - 2dcfbbf9071a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: thermo_raw_file_converter
   owner: galaxyp
   revisions:
-  - 92ac8e086317
-  - b9b385097f13
   - 63769c4217a7
   - 19e45916daf9
+  - 92ac8e086317
   - 26c6706bfb07
+  - b9b385097f13
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fatovcf
@@ -166,15 +167,15 @@ tools:
 - name: ucsc_twobittofa
   owner: iuc
   revisions:
-  - 3c6f9e8a4c17
   - 8067dfa00ed2
+  - 3c6f9e8a4c17
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_wigtobigwig
   owner: iuc
   revisions:
-  - 98704d357ede
   - a2f83a375bf2
+  - 98704d357ede
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2maf
diff --git a/staging.gvl.org.au/deeptools.yml b/staging.gvl.org.au/deeptools.yml
index 1298b8fb9..020326aba 100644
--- a/staging.gvl.org.au/deeptools.yml
+++ b/staging.gvl.org.au/deeptools.yml
@@ -2,34 +2,34 @@ tools:
 - name: deeptools_bam_compare
   owner: bgruening
   revisions:
-  - 29451af70c52
   - c929a006727f
+  - 29451af70c52
+  - de72ba3ed6f2
   - e821645ef8fc
   - 5f6d123679f4
-  - a1ca9bccc7f2
   - 268e91e540ee
-  - de72ba3ed6f2
+  - a1ca9bccc7f2
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_coverage
   owner: bgruening
   revisions:
-  - 2d2cf5c1ea8a
-  - 12af64f93288
-  - 0e49b109abc2
   - bb1e4f63e0e6
-  - 7a7fd0f5f15d
+  - 2d2cf5c1ea8a
   - 5d11599b8a7d
   - 0e143b4c3987
+  - 0e49b109abc2
+  - 7a7fd0f5f15d
+  - 12af64f93288
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_pe_fragmentsize
   owner: bgruening
   revisions:
-  - 7c1beb6d6eca
+  - 1d848bc4585f
   - dc059492a995
+  - 7c1beb6d6eca
   - 195e98217334
-  - 1d848bc4585f
   - c06951d10364
   - 81b1e3e1fc6c
   tool_panel_section_label: DeepTools
@@ -37,170 +37,170 @@ tools:
 - name: deeptools_bigwig_compare
   owner: bgruening
   revisions:
-  - 71aa86af6762
   - 93eb012d9eed
-  - a67ac707496a
+  - 71aa86af6762
   - 3d211717a775
   - 26e7304d6737
-  - bfff7454b59a
   - 07418a30ed01
+  - a67ac707496a
+  - bfff7454b59a
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_gc_bias
   owner: bgruening
   revisions:
-  - 29fcfd36e90a
-  - dd0b7398bb96
-  - b8858746dc1f
   - 56d5b797ce84
   - 2bc10a9ca58b
-  - 5be24eba848d
+  - b8858746dc1f
   - 26983857c91a
+  - 5be24eba848d
+  - 29fcfd36e90a
+  - dd0b7398bb96
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix_operations
   owner: bgruening
   revisions:
-  - 7e6bcd2e5128
+  - ee3a1b0f45f1
   - c3e012dfe21f
-  - e6d0bff01239
   - 7ef978dc1b8a
-  - ee3a1b0f45f1
   - 9384cd033f30
+  - e6d0bff01239
+  - 7e6bcd2e5128
   - 72bfafe3330b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix
   owner: bgruening
   revisions:
-  - 9470f29702f8
+  - d9a637e83828
   - 167788df3b46
-  - b73e213add0c
-  - 514fa53b5efb
+  - 9470f29702f8
   - fb9cf9c97ec4
-  - a60c359ec43c
+  - 514fa53b5efb
   - fd1275e01605
-  - d9a637e83828
+  - b73e213add0c
+  - a60c359ec43c
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_correct_gc_bias
   owner: bgruening
   revisions:
-  - 2c37ce318bc3
-  - 86febdcc4283
   - e479c7ca5570
+  - 86febdcc4283
+  - c34d11ea4ba6
   - a02cfa31e9cb
-  - 5bffaa8354a1
+  - 2c37ce318bc3
   - ca0616bb2cdf
-  - c34d11ea4ba6
+  - 5bffaa8354a1
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bam_summary
   owner: bgruening
   revisions:
+  - 192ef85c0b0b
+  - 69a8621ca2f0
   - 78f405266706
-  - 01fb6a7654e6
   - 1fcb7adc39b8
-  - 69a8621ca2f0
   - 2d466b530754
-  - 192ef85c0b0b
+  - 01fb6a7654e6
   - 004aea905d4d
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bigwig_summary
   owner: bgruening
   revisions:
-  - d580d6acd1df
-  - 9ecba5e225a6
-  - d9ce4897dbb2
-  - 459cfa861f0b
-  - 137c4beed34b
   - 3c9f0c486cca
   - db940c262830
+  - 137c4beed34b
+  - d9ce4897dbb2
   - 2f9e4843f480
+  - 459cfa861f0b
+  - d580d6acd1df
+  - 9ecba5e225a6
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_correlation
   owner: bgruening
   revisions:
-  - 32e451def88c
-  - 2c66e43f1c86
-  - f264afa9fa6f
+  - fd408d755394
   - bd7db9e2f2cb
   - bad3ca889618
+  - 2c66e43f1c86
+  - 32e451def88c
+  - f264afa9fa6f
   - fbe773640707
-  - fd408d755394
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_coverage
   owner: bgruening
   revisions:
+  - 3b9d990a0a0e
+  - 9368fbc49c8b
   - 231994413f89
   - 7e361d147872
-  - 4e12ea27f788
-  - 9368fbc49c8b
-  - 3b9d990a0a0e
   - 56bce3c82278
   - 7fda5607e777
+  - 4e12ea27f788
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_enrichment
   owner: bgruening
   revisions:
   - ce4ce3316f74
-  - 4431f39ede55
   - 94ca68515826
-  - c03c3384cd81
   - b1779366c8e9
   - e65d16fb2724
+  - c03c3384cd81
   - d9114ef1c8a5
+  - 4431f39ede55
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_fingerprint
   owner: bgruening
   revisions:
-  - 793665fff0f8
-  - b88ebb3672a1
-  - 2da482e408b8
-  - f8fc4e5aff9d
   - 23f7c5f1fdaf
-  - 4ed32329e0ed
+  - f8fc4e5aff9d
   - d57251071381
+  - 793665fff0f8
+  - 4ed32329e0ed
+  - 2da482e408b8
+  - b88ebb3672a1
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_heatmap
   owner: bgruening
   revisions:
-  - 25d830337d31
-  - e4c7985d4585
+  - a4dfb122e52b
   - c60570fa602f
-  - ba6efa77fb79
+  - 25d830337d31
+  - 512155688d98
   - a7849312d328
   - 010e58e9d822
-  - 512155688d98
-  - a4dfb122e52b
+  - ba6efa77fb79
+  - e4c7985d4585
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_pca
   owner: bgruening
   revisions:
-  - 69264da0ce77
-  - 4d678170d29b
   - 38e3f226248b
-  - 443d9a9d6d11
   - 00d869ea03a1
-  - c899e0ccff8c
+  - 4d678170d29b
   - aa200e4f3939
+  - 443d9a9d6d11
+  - 69264da0ce77
+  - c899e0ccff8c
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_profile
   owner: bgruening
   revisions:
-  - a2d70c4fd406
-  - 10301d137111
   - aac8444d6681
-  - c361b12d207a
   - 6662b1a8d326
+  - 10301d137111
   - d806504e96d9
+  - c361b12d207a
+  - a2d70c4fd406
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/dna_metabarcoding.yml b/staging.gvl.org.au/dna_metabarcoding.yml
index 48c681b37..bf5c0a838 100644
--- a/staging.gvl.org.au/dna_metabarcoding.yml
+++ b/staging.gvl.org.au/dna_metabarcoding.yml
@@ -2,8 +2,8 @@ tools:
 - name: obi_annotate
   owner: iuc
   revisions:
-  - 3021b9f5809f
   - d50dc96e3ce9
+  - 3021b9f5809f
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_clean
@@ -23,8 +23,8 @@ tools:
 - name: obi_grep
   owner: iuc
   revisions:
-  - 02bab5ff7c37
   - e9e49cf06b42
+  - 02bab5ff7c37
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_illumina_pairend
@@ -37,15 +37,15 @@ tools:
 - name: obi_ngsfilter
   owner: iuc
   revisions:
-  - 91a1ed0b486f
   - 76e69de726b2
+  - 91a1ed0b486f
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_sort
   owner: iuc
   revisions:
-  - b6d9ea2fb41b
   - 12b9e285ca1c
+  - b6d9ea2fb41b
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_stat
diff --git a/staging.gvl.org.au/emboss.yml b/staging.gvl.org.au/emboss.yml
index 52347455d..9e65a9209 100644
--- a/staging.gvl.org.au/emboss.yml
+++ b/staging.gvl.org.au/emboss.yml
@@ -2,9 +2,9 @@ tools:
 - name: emboss_5
   owner: devteam
   revisions:
-  - dba489bfcd62
   - ce385837c160
-  - 63dd26468588
   - 832c20329690
+  - dba489bfcd62
+  - 63dd26468588
   tool_panel_section_label: EMBOSS
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/epigenetics.yml b/staging.gvl.org.au/epigenetics.yml
index 43a1f4c9f..6744de692 100644
--- a/staging.gvl.org.au/epigenetics.yml
+++ b/staging.gvl.org.au/epigenetics.yml
@@ -8,11 +8,11 @@ tools:
 - name: bwameth
   owner: iuc
   revisions:
-  - d82648ad25a3
-  - 6da3972210ee
-  - 62f5fab76dfb
   - 29bdbc353f20
   - cf1322aeb137
+  - 6da3972210ee
+  - d82648ad25a3
+  - 62f5fab76dfb
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metilene
@@ -24,7 +24,7 @@ tools:
 - name: pileometh
   owner: bgruening
   revisions:
-  - d6787bab7b11
   - 183cb55b1729
+  - d6787bab7b11
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/fastafastq.yml b/staging.gvl.org.au/fastafastq.yml
index f14543a61..a25ea6010 100644
--- a/staging.gvl.org.au/fastafastq.yml
+++ b/staging.gvl.org.au/fastafastq.yml
@@ -8,26 +8,26 @@ tools:
 - name: cutadapt
   owner: lparsons
   revisions:
-  - 4e5056fefd88
-  - b1c926deaa2d
-  - c4b82dce8335
-  - fe74900d6dc7
+  - 48f587c13075
   - 64172f1c1202
-  - 5eb7e84243f2
+  - e4691e1589d3
+  - 49370cb85f0f
   - 660cffd8d92a
+  - 4e5056fefd88
+  - de6cebe3c043
+  - b1c926deaa2d
   - c5e2e5902201
-  - 8665bcc8b847
-  - 093678460093
-  - 49370cb85f0f
-  - e4691e1589d3
   - 5915ea1ec9b1
+  - 5eb7e84243f2
+  - 288f97432497
+  - c4b82dce8335
+  - 8665bcc8b847
+  - fe74900d6dc7
   - 135b80fb1ac2
   - c053d4cad713
-  - de6cebe3c043
-  - 48f587c13075
-  - 288f97432497
   - 44e2cc14f75b
   - 8c0175e03cee
+  - 093678460093
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cutadapt
@@ -39,9 +39,9 @@ tools:
 - name: fasta_clipping_histogram
   owner: devteam
   revisions:
-  - f666895cbebd
   - 9db07fd39f85
   - 8889eb864cef
+  - f666895cbebd
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_clipping_histogram
@@ -53,9 +53,9 @@ tools:
 - name: fasta_compute_length
   owner: devteam
   revisions:
+  - 7d37cfda8e00
   - 5cbde03c1103
   - de2db1bdfbf8
-  - 7d37cfda8e00
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_compute_length
@@ -67,8 +67,8 @@ tools:
 - name: fasta_concatenate_by_species
   owner: devteam
   revisions:
-  - 25b8736c627a
   - 717aee069681
+  - 25b8736c627a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_extract
@@ -80,16 +80,16 @@ tools:
 - name: fasta_filter_by_length
   owner: devteam
   revisions:
-  - 8cacfcf96a52
   - e626b3ff9922
+  - 8cacfcf96a52
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_formatter
   owner: devteam
   revisions:
-  - 859422bcb689
   - 516b97a23d7e
   - 9457a20156db
+  - 859422bcb689
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_formatter
@@ -122,10 +122,10 @@ tools:
 - name: fasta_stats
   owner: iuc
   revisions:
-  - 0dbb995c7d35
-  - 56022eb50bbd
-  - cd0874854f51
   - 9c620a950d3a
+  - cd0874854f51
+  - 56022eb50bbd
+  - 0dbb995c7d35
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_stats
@@ -139,23 +139,24 @@ tools:
   revisions:
   - dbf9c561ef29
   - 1d8fe9bc4cb0
-  - d60c3f704da0
   - c59d48774d03
+  - d60c3f704da0
   - 65b93b623c77
+  - dbfc505896e9
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastp
   owner: iuc
   revisions:
-  - d60c3f704da0
+  - dbfc505896e9
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_combiner
   owner: devteam
   revisions:
   - b05e39b9c170
-  - f1dc2a761c30
   - 9115b978ce10
+  - f1dc2a761c30
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_combiner
@@ -167,9 +168,9 @@ tools:
 - name: fastq_filter
   owner: devteam
   revisions:
-  - 81a9090d6df3
   - '144275714590'
   - 10b75444feae
+  - 81a9090d6df3
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_filter
@@ -195,8 +196,8 @@ tools:
 - name: fastq_manipulation
   owner: devteam
   revisions:
-  - 7861f3b10c68
   - 5b87038565bb
+  - 7861f3b10c68
   - e30352e889fe
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -224,8 +225,8 @@ tools:
   owner: devteam
   revisions:
   - 03d57fea6482
-  - 523c2aff0376
   - f3936d0632cb
+  - 523c2aff0376
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_deinterlacer
@@ -251,9 +252,9 @@ tools:
 - name: fastq_paired_end_joiner
   owner: devteam
   revisions:
-  - c885369b207b
   - 8d958759cf2a
   - 09a2199cd356
+  - c885369b207b
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_joiner
@@ -265,8 +266,8 @@ tools:
 - name: fastq_paired_end_splitter
   owner: devteam
   revisions:
-  - 397dc333436b
   - e39cc71d3ed6
+  - 397dc333436b
   - 249c8393f2d4
   - 35e38452bb3f
   tool_panel_section_label: FASTA/FASTQ
@@ -280,9 +281,9 @@ tools:
 - name: fastq_quality_converter
   owner: devteam
   revisions:
+  - 54053ea6c77e
   - 045f0e1043f7
   - 74db4cffab1f
-  - 54053ea6c77e
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_quality_converter
@@ -294,9 +295,9 @@ tools:
 - name: fastq_stats
   owner: devteam
   revisions:
+  - b1cea1b2fcd0
   - f86c27295151
   - f0e7deab6518
-  - b1cea1b2fcd0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_stats
@@ -308,9 +309,9 @@ tools:
 - name: fastq_trimmer
   owner: devteam
   revisions:
-  - f0b18efb97f1
-  - 33794bdb7fe0
   - b63b2bfb3ea3
+  - 33794bdb7fe0
+  - f0b18efb97f1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer
@@ -322,17 +323,17 @@ tools:
 - name: fastqtofasta
   owner: devteam
   revisions:
-  - 297962e79f39
   - ac3fed111eb6
+  - 297962e79f39
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_artifacts_filter
   owner: devteam
   revisions:
-  - d5e9e83cd3d8
-  - 09070cacefd8
   - 567d5b3c52b1
   - 529bccd5e4a1
+  - 09070cacefd8
+  - d5e9e83cd3d8
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_artifacts_filter
@@ -344,9 +345,9 @@ tools:
 - name: fastx_barcode_splitter
   owner: devteam
   revisions:
+  - 4bedca26c133
   - 0b7ec11b3c7c
   - 8abdedf55101
-  - 4bedca26c133
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_barcode_splitter
@@ -358,10 +359,10 @@ tools:
 - name: fastx_clipper
   owner: devteam
   revisions:
-  - 90858c306551
-  - 736b8f6ee456
   - cb1e251cac37
   - bdf1ce174e39
+  - 736b8f6ee456
+  - 90858c306551
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_clipper
@@ -374,8 +375,8 @@ tools:
   owner: devteam
   revisions:
   - 7ce1891db6f5
-  - 421f0af4ee95
   - 07497255281e
+  - 421f0af4ee95
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_collapser
@@ -388,9 +389,9 @@ tools:
   owner: devteam
   revisions:
   - b29d37ca9e41
-  - 3599f5451ee2
   - 02f8a17a4ebd
   - f984bb114520
+  - 3599f5451ee2
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_renamer
@@ -404,8 +405,8 @@ tools:
   revisions:
   - 6027ef51ef91
   - 177f0621c266
-  - 0c2907307ba4
   - e246088b6e34
+  - 0c2907307ba4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_reverse_complement
@@ -417,8 +418,8 @@ tools:
 - name: fastx_trimmer
   owner: devteam
   revisions:
-  - 73194cdd4f57
   - 61b4cedc8934
+  - 73194cdd4f57
   - 547e8d00f11c
   - 377ac2829eac
   tool_panel_section_label: FASTA/FASTQ
@@ -444,10 +445,10 @@ tools:
 - name: pear
   owner: iuc
   revisions:
-  - 037f0acc7830
+  - f69501361cec
   - 2f804526f5fd
+  - 037f0acc7830
   - b4c6f054210a
-  - f69501361cec
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pear
@@ -480,8 +481,8 @@ tools:
 - name: seqtk
   owner: iuc
   revisions:
-  - 4b494533146a
   - 3da72230c066
+  - 4b494533146a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seqtk
@@ -499,16 +500,16 @@ tools:
 - name: trimmomatic
   owner: pjbriggs
   revisions:
-  - dfa082f84068
   - 51b771646466
+  - dfa082f84068
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fasplit
   owner: iuc
   revisions:
   - 71f649c23021
-  - d3f58a0dc09d
   - bf04bd405d5b
+  - d3f58a0dc09d
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fasplit
@@ -521,11 +522,11 @@ tools:
   owner: iuc
   revisions:
   - b557acca0b56
+  - 24013bf85a6f
   - 71ad4a56c40c
   - e654095ab143
-  - 24013bf85a6f
-  - a535cf1e5da4
   - 8250ea3a1501
+  - a535cf1e5da4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_count
@@ -544,14 +545,14 @@ tools:
 - name: umi_tools_extract
   owner: iuc
   revisions:
-  - 828dba98cdb4
-  - 27ac32a22ad2
   - 9fa7803d1c51
-  - 6a675c3aa610
   - 7accf7407811
-  - f3759eec3018
   - 015cf18f4a15
+  - 27ac32a22ad2
   - 7a7e33d28f62
+  - f3759eec3018
+  - 6a675c3aa610
+  - 828dba98cdb4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_extract
@@ -570,8 +571,8 @@ tools:
 - name: umi_tools_whitelist
   owner: iuc
   revisions:
-  - 4c8a1c7d3608
   - 953b4821b183
+  - 4c8a1c7d3608
   - e4e12f0b3af1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/fastq_quality_control.yml b/staging.gvl.org.au/fastq_quality_control.yml
index f71b02d5c..54ad2bb11 100644
--- a/staging.gvl.org.au/fastq_quality_control.yml
+++ b/staging.gvl.org.au/fastq_quality_control.yml
@@ -2,10 +2,10 @@ tools:
 - name: fastq_quality_filter
   owner: devteam
   revisions:
-  - e41385662e5e
-  - 7b4468117008
   - ce9cd02d5b88
   - 64e9a6afdd0c
+  - e41385662e5e
+  - 7b4468117008
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer_by_quality
@@ -18,14 +18,14 @@ tools:
 - name: fastqc
   owner: devteam
   revisions:
-  - 2c64fded1286
-  - f2e8552cf1d0
   - 3d0c7bdf12f5
   - 2b0c9d9fc6ca
-  - ff9530579d1f
-  - 9da02be9c6cc
   - e7b2202befea
+  - 9da02be9c6cc
+  - ff9530579d1f
   - 5ec9f6bceaee
+  - 2c64fded1286
+  - f2e8552cf1d0
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqe
@@ -38,47 +38,47 @@ tools:
 - name: fastx_nucleotides_distribution
   owner: devteam
   revisions:
-  - b6b54ba71bd8
   - ad116ae3f4d9
   - 18a51655db17
+  - b6b54ba71bd8
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_quality_statistics
   owner: devteam
   revisions:
   - 59003d0543cd
-  - cc0fd298cc17
   - 7306ec78632a
+  - cc0fd298cc17
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filtlong
   owner: iuc
   revisions:
   - 8880fb74ef56
-  - a72af9de6bf5
   - 1f296803dfa3
+  - a72af9de6bf5
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: multiqc
   owner: iuc
   revisions:
+  - f7e2f1eb3a16
+  - 75c93c70d094
+  - abfd8a6544d7
+  - bf675f34b056
+  - 3d93dd18d9f8
   - 5e33b465d8d5
   - b2f1f75d49c4
-  - 1c2db0054039
   - 9a913cdee30e
+  - 1c2db0054039
   - f7985e0479b9
-  - bf675f34b056
-  - 75c93c70d094
-  - 3d93dd18d9f8
-  - abfd8a6544d7
-  - f7e2f1eb3a16
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trim_galore
   owner: bgruening
   revisions:
-  - 949f01671246
   - cd7e644cae1d
   - 084bbd8ba7b8
+  - 949f01671246
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/fetch_alignmentssequences.yml b/staging.gvl.org.au/fetch_alignmentssequences.yml
index c01999d90..0dfc5355c 100644
--- a/staging.gvl.org.au/fetch_alignmentssequences.yml
+++ b/staging.gvl.org.au/fetch_alignmentssequences.yml
@@ -8,7 +8,7 @@ tools:
 - name: isescan
   owner: iuc
   revisions:
-  - 9e776e7fab4f
   - 19f42b3ea391
+  - 9e776e7fab4f
   tool_panel_section_label: Fetch Alignments/Sequences
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/filter_and_sort.yml b/staging.gvl.org.au/filter_and_sort.yml
index 9243d596c..ae96506a7 100644
--- a/staging.gvl.org.au/filter_and_sort.yml
+++ b/staging.gvl.org.au/filter_and_sort.yml
@@ -15,8 +15,8 @@ tools:
 - name: seq_filter_by_id
   owner: peterjc
   revisions:
-  - 141612f8c3e3
   - 85ef5f5a0562
+  - 141612f8c3e3
   - 83a19df00eab
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/gemini_tools.yml b/staging.gvl.org.au/gemini_tools.yml
index 5a111684c..a8ba4d39a 100644
--- a/staging.gvl.org.au/gemini_tools.yml
+++ b/staging.gvl.org.au/gemini_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: gemini_actionable_mutations
   owner: iuc
   revisions:
-  - 142d95ab942e
   - 3630a6e624d4
+  - 142d95ab942e
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_amend
@@ -17,15 +17,15 @@ tools:
   owner: iuc
   revisions:
   - 8f53b238a360
-  - f2f3bc622a16
   - 0c8f7322f8fc
+  - f2f3bc622a16
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_burden
   owner: iuc
   revisions:
-  - 1a4c5adcd587
   - df57188562f0
+  - 1a4c5adcd587
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_comp_hets
@@ -45,15 +45,15 @@ tools:
 - name: gemini_de_novo
   owner: iuc
   revisions:
-  - 9db3e299b1c8
   - d5b01cc263be
+  - 9db3e299b1c8
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_dump
   owner: iuc
   revisions:
-  - 40f85b45e472
   - 96a2d270bf0f
+  - 40f85b45e472
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_fusions
@@ -79,8 +79,8 @@ tools:
 - name: gemini_interactions
   owner: iuc
   revisions:
-  - 184aa4e686e2
   - 2550239feed5
+  - 184aa4e686e2
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_load
@@ -94,8 +94,8 @@ tools:
 - name: gemini_lof_sieve
   owner: iuc
   revisions:
-  - 90021fffff70
   - 2969a1f43b7d
+  - 90021fffff70
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_mendel_errors
@@ -115,23 +115,23 @@ tools:
 - name: gemini_qc
   owner: iuc
   revisions:
-  - 86e46972e183
   - 9e83673fa6d2
+  - 86e46972e183
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_query
   owner: iuc
   revisions:
-  - 666f60a9331a
-  - 840fb4850be3
   - da74170c55c7
+  - 840fb4850be3
+  - 666f60a9331a
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_recessive_and_dominant
   owner: iuc
   revisions:
-  - 05124dc72dba
   - 86f3aac4418d
+  - 05124dc72dba
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_region
@@ -151,15 +151,15 @@ tools:
 - name: gemini_set_somatic
   owner: iuc
   revisions:
-  - ef9991a4a9a7
   - e4e2128460e3
+  - ef9991a4a9a7
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_stats
   owner: iuc
   revisions:
-  - ee894347fcd6
   - 5c9efee9cb1e
+  - ee894347fcd6
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_windower
diff --git a/staging.gvl.org.au/genome_editing.yml b/staging.gvl.org.au/genome_editing.yml
index c5b84e945..18d33de94 100644
--- a/staging.gvl.org.au/genome_editing.yml
+++ b/staging.gvl.org.au/genome_editing.yml
@@ -16,21 +16,21 @@ tools:
 - name: mageck_mle
   owner: iuc
   revisions:
-  - 26126538a86f
   - b36c85e37a48
+  - 26126538a86f
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_pathway
   owner: iuc
   revisions:
-  - 9744e1124d0f
   - 39a996d44e16
+  - 9744e1124d0f
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_test
   owner: iuc
   revisions:
-  - 9b4f4533c9ee
   - 688a8eccea71
+  - 9b4f4533c9ee
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/get_data.yml b/staging.gvl.org.au/get_data.yml
index d5c19a8e5..cd7b1f4e4 100644
--- a/staging.gvl.org.au/get_data.yml
+++ b/staging.gvl.org.au/get_data.yml
@@ -2,10 +2,10 @@ tools:
 - name: dbbuilder
   owner: galaxyp
   revisions:
-  - b39347891609
-  - c1b437242fee
   - e9df53a75f3c
+  - c1b437242fee
   - 983bf725dfc2
+  - b39347891609
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ega_download_client
@@ -17,53 +17,53 @@ tools:
 - name: ncbi_acc_download
   owner: iuc
   revisions:
-  - e063168e0a81
-  - 1c58de56d587
   - 28587613264f
+  - 1c58de56d587
+  - e063168e0a81
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sra_tools
   owner: iuc
   revisions:
-  - 69ebb7f46e45
-  - 734abc7ac21d
-  - 6ea73833cf67
   - 5e6237d58b0c
-  - f8054ea1c365
-  - 83c7d564b128
-  - 1ec814014652
+  - 4df8de2d0e48
   - aad3885b3216
-  - f5ea3ce9b9b0
-  - 1790dcf3c32d
-  - 4317d3cb6cba
   - 8848455c0270
-  - 516a54ddf218
-  - e407b9da183a
-  - c441583adae5
-  - 653e89d73fc4
+  - 1ec814014652
   - e08a7ad4378b
-  - 7068f48d0ef9
   - 9a776b080193
-  - 4df8de2d0e48
-  - ba931a59dd59
+  - c441583adae5
+  - f8054ea1c365
+  - 7068f48d0ef9
+  - 4317d3cb6cba
+  - 83c7d564b128
+  - e407b9da183a
+  - f5ea3ce9b9b0
+  - 69ebb7f46e45
+  - 516a54ddf218
+  - 734abc7ac21d
+  - 6ea73833cf67
   - 6591f049cf7e
+  - 1790dcf3c32d
+  - ba931a59dd59
+  - 653e89d73fc4
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unipept
   owner: galaxyp
   revisions:
-  - 34758ab8aaa4
-  - 9aaa46d45472
   - 75b3b3d0adbf
+  - 34758ab8aaa4
   - 21a560af5913
+  - 9aaa46d45472
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: uniprot_rest_interface
   owner: bgruening
   revisions:
-  - 054483e27a35
+  - 468c71dac78a
   - bfdc6a7ffd3a
   - af5eccf83605
-  - 468c71dac78a
+  - 054483e27a35
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/graphdisplay_data.yml b/staging.gvl.org.au/graphdisplay_data.yml
index ee13f1750..3bb5789c4 100644
--- a/staging.gvl.org.au/graphdisplay_data.yml
+++ b/staging.gvl.org.au/graphdisplay_data.yml
@@ -2,15 +2,15 @@ tools:
 - name: circos
   owner: iuc
   revisions:
+  - 4b519282a05b
+  - c4bde687c846
   - 290a11559985
-  - 7f13dc906cb9
+  - 740057a5126d
   - ae9994cf526f
+  - df7356989ac1
   - a64dc31ab7f2
+  - 7f13dc906cb9
   - fd59d783248a
-  - c4bde687c846
-  - df7356989ac1
-  - 4b519282a05b
-  - 740057a5126d
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: draw_stacked_barplots
@@ -34,9 +34,9 @@ tools:
 - name: fastq_quality_boxplot
   owner: devteam
   revisions:
-  - 867ab348287d
   - 7cf5b1d072b5
   - f95284aa2946
+  - 867ab348287d
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: geneiobio
@@ -48,11 +48,12 @@ tools:
 - name: ggplot2_heatmap2
   owner: iuc
   revisions:
-  - 3b37b1b1c3a7
-  - ca7cb0eaad62
   - 374e9062d874
   - 53460afd5115
+  - 51c6ccaace7e
   - '566197475670'
+  - 3b37b1b1c3a7
+  - ca7cb0eaad62
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_heatmap
@@ -60,10 +61,10 @@ tools:
   revisions:
   - da4c086cff5b
   - 1a72f938213e
-  - d3a9e32672ec
-  - 3d059e9c2fba
   - 10515715c940
   - 391a4cc45fea
+  - d3a9e32672ec
+  - 3d059e9c2fba
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_histogram
@@ -83,12 +84,12 @@ tools:
 - name: ggplot2_point
   owner: iuc
   revisions:
-  - 5fe1dc76176e
-  - 299307abd804
-  - e3a675da7fd0
   - 5298e06f14f9
-  - 1acf88921176
+  - e3a675da7fd0
+  - 5fe1dc76176e
   - d0fc8b746d57
+  - 1acf88921176
+  - 299307abd804
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_violin
@@ -121,8 +122,8 @@ tools:
 - name: histogram
   owner: devteam
   revisions:
-  - 6f134426c2b0
   - cdb9e89e2970
+  - 6f134426c2b0
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jbrowse2
@@ -134,17 +135,17 @@ tools:
 - name: jbrowse
   owner: iuc
   revisions:
-  - fd5dbf0f732e
+  - ca2def38369c
+  - 17359b808b01
+  - a6e57ff585c0
   - 112eb40ba6cf
   - 836d1aa3e89a
-  - 4542035c1075
   - 667e17248bfe
-  - 6cd09d7b5f37
-  - 17359b808b01
-  - a6e57ff585c0
-  - ca2def38369c
+  - 4542035c1075
+  - fd5dbf0f732e
   - 2bb2e07a7a21
   - 1cfc579079a6
+  - 6cd09d7b5f37
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krona_text
@@ -162,31 +163,31 @@ tools:
 - name: pathview
   owner: iuc
   revisions:
-  - f1691de443a7
   - fe154a7af404
   - 03c13085aecc
+  - f1691de443a7
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pe_histogram
   owner: iuc
   revisions:
-  - bd1416eea1f0
   - 594b85e4237a
+  - bd1416eea1f0
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plot_ragtag_paf
   owner: galaxy-australia
   revisions:
-  - 94e0834ae4ed
   - c1bed78b9ed5
+  - 94e0834ae4ed
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_ml_performance_plots
   owner: bgruening
   revisions:
+  - 1c5dcef5ce0f
   - 62e3a4e8c54c
   - f234e2e59d76
-  - 1c5dcef5ce0f
   - 85da91bbdbfb
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -206,8 +207,8 @@ tools:
 - name: pretext_snapshot
   owner: iuc
   revisions:
-  - 6c571966cfb9
   - 7c9417381ad5
+  - 6c571966cfb9
   - 44c66e8d21e6
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -220,23 +221,23 @@ tools:
 - name: pygenometracks
   owner: iuc
   revisions:
-  - 36b848d5f3ec
-  - 14e7c35f3d00
   - 4ac4e7083b7e
   - 326a3db8d9d1
-  - 360df4999907
+  - 7dd841a32245
+  - 14e7c35f3d00
   - a1abfa420d9d
+  - 360df4999907
   - 2824d77cd8f8
-  - 7dd841a32245
+  - 36b848d5f3ec
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: volcanoplot
   owner: iuc
   revisions:
+  - 2f557f6abbfb
   - 73b8cb5bddcd
   - 44608d0193ed
   - 83c573f2e73c
-  - 2f557f6abbfb
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: weblogo3
diff --git a/staging.gvl.org.au/hca_single_cell.yml b/staging.gvl.org.au/hca_single_cell.yml
index aab1f45ea..15806ebf0 100644
--- a/staging.gvl.org.au/hca_single_cell.yml
+++ b/staging.gvl.org.au/hca_single_cell.yml
@@ -21,8 +21,8 @@ tools:
 - name: salmon_kallisto_mtx_to_10x
   owner: ebi-gxa
   revisions:
-  - e42c217a450f
   - 88f5a0a6a818
+  - e42c217a450f
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_compute_graph
@@ -35,22 +35,22 @@ tools:
 - name: scanpy_filter_cells
   owner: ebi-gxa
   revisions:
-  - bf1e0bdec1db
   - 361608369dda
+  - bf1e0bdec1db
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter_genes
   owner: ebi-gxa
   revisions:
-  - cc64914b0cf4
   - 23d838d1569d
+  - cc64914b0cf4
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_find_cluster
   owner: ebi-gxa
   revisions:
-  - 36735850e461
   - fc4b3b46dc9d
+  - 36735850e461
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_find_markers
@@ -70,8 +70,8 @@ tools:
 - name: scanpy_integrate_bbknn
   owner: ebi-gxa
   revisions:
-  - c9da9192eee5
   - 9d76c3d6dff6
+  - c9da9192eee5
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_integrate_combat
@@ -91,9 +91,9 @@ tools:
 - name: scanpy_integrate_mnn
   owner: ebi-gxa
   revisions:
-  - 9a2f72d7dbd2
-  - ff6decc0f432
   - 94697510d55f
+  - ff6decc0f432
+  - 9a2f72d7dbd2
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_multiplet_scrublet
@@ -113,8 +113,8 @@ tools:
 - name: scanpy_parameter_iterator
   owner: ebi-gxa
   revisions:
-  - 73d43034c860
   - d4c9061c8fef
+  - 73d43034c860
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot_embed
@@ -127,15 +127,15 @@ tools:
 - name: scanpy_plot_scrublet
   owner: ebi-gxa
   revisions:
-  - 6f5509cf3176
   - 4a74b45c1ce4
+  - 6f5509cf3176
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot_trajectory
   owner: ebi-gxa
   revisions:
-  - cb1992d1804b
   - d3df472a21dc
+  - cb1992d1804b
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_read_10x
@@ -148,8 +148,8 @@ tools:
 - name: scanpy_regress_variable
   owner: ebi-gxa
   revisions:
-  - 0bab2ae44e7a
   - d18ed15697bb
+  - 0bab2ae44e7a
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_run_diffmap
@@ -190,22 +190,22 @@ tools:
 - name: scanpy_run_tsne
   owner: ebi-gxa
   revisions:
-  - abdb61e4afa3
   - 3fb53f5e46ea
+  - abdb61e4afa3
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_run_umap
   owner: ebi-gxa
   revisions:
   - 0f98603d0116
-  - 767a675b5254
   - ea91cfd0444e
+  - 767a675b5254
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_scale_data
   owner: ebi-gxa
   revisions:
-  - e2d0dc8a50ca
   - 4cc9362782b4
+  - e2d0dc8a50ca
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/hicexplorer.yml b/staging.gvl.org.au/hicexplorer.yml
index 04332c07f..53c14ce57 100644
--- a/staging.gvl.org.au/hicexplorer.yml
+++ b/staging.gvl.org.au/hicexplorer.yml
@@ -12,20 +12,20 @@ tools:
 - name: hicexplorer_hicfindtads
   owner: bgruening
   revisions:
-  - 5746d61f0a91
-  - 755df866ad0c
   - ec4b948dc6f0
-  - d404277cc87a
   - 78fb5e286609
+  - 755df866ad0c
+  - d404277cc87a
+  - 5746d61f0a91
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergematrixbins
   owner: bgruening
   revisions:
-  - 9e357a8b2ec3
   - 03dd3c16ae4e
   - 11fa44ee0603
   - 4d511437b1e5
+  - 9e357a8b2ec3
   - 977dc15add20
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -33,20 +33,20 @@ tools:
   owner: bgruening
   revisions:
   - 3b5b54ed6392
-  - 0ba4f56a3613
-  - 41dbf4d162a2
   - 77919cc3618e
   - c3e5e2cf12b7
+  - 0ba4f56a3613
+  - 41dbf4d162a2
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotmatrix
   owner: bgruening
   revisions:
-  - 12d51d7be66f
-  - 5308ca68ef3d
   - b63363075c2e
+  - 12d51d7be66f
   - 9939786dd9c9
   - 7babd8a46fe0
+  - 5308ca68ef3d
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplottads
diff --git a/staging.gvl.org.au/imaging.yml b/staging.gvl.org.au/imaging.yml
index e61ae6ff2..28c65aad9 100644
--- a/staging.gvl.org.au/imaging.yml
+++ b/staging.gvl.org.au/imaging.yml
@@ -3,43 +3,43 @@ tools:
   owner: imgteam
   revisions:
   - 3df9f0a4bf34
-  - 699a5e9146b3
-  - 81f0cbca04a7
   - 8bccb36e055a
-  - 0c777d708acc
+  - 81f0cbca04a7
+  - 699a5e9146b3
   - 7db4fc31dbee
+  - 0c777d708acc
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_feature_extraction
   owner: imgteam
   revisions:
+  - 0a53256b48c6
   - 5bc8cdc17fd0
   - 2436a8807ad1
-  - 0a53256b48c6
   - 5791a7f65275
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_filter_segmentation_by_features
   owner: imgteam
   revisions:
-  - 6ad1d3cfdea1
   - 9d47aabda459
+  - 6ad1d3cfdea1
   - e576b73a2e2f
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_histogram_equalization
   owner: imgteam
   revisions:
-  - 77f7159d775a
   - 70316d792fc9
+  - 77f7159d775a
   - b1c2c210813c
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_simple_filter
   owner: imgteam
   revisions:
-  - f70b215d155c
   - dba87c4b32d3
+  - f70b215d155c
   - d51310ab328a
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -48,9 +48,9 @@ tools:
   revisions:
   - 85edbb7a436b
   - fcadded98e61
-  - 10eed33aa9b2
-  - b07f4839ca77
   - f3360fbeda64
+  - b07f4839ca77
+  - 10eed33aa9b2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: binary2labelimage
@@ -71,32 +71,32 @@ tools:
 - name: cp_cellprofiler
   owner: bgruening
   revisions:
-  - e917a2424690
   - 0e4dccaafef5
+  - e917a2424690
   - eb6c08714244
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_color_to_gray
   owner: bgruening
   revisions:
-  - e8f822eeb9fd
   - bad171ed1e96
+  - e8f822eeb9fd
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_common
   owner: bgruening
   revisions:
-  - e7273daa5ae2
   - 6070780813d9
   - 670975e92458
+  - e7273daa5ae2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_convert_objects_to_image
   owner: bgruening
   revisions:
+  - cdf8e3c57dae
   - ef4aed1d34c4
   - df3ad3ba5c6f
-  - cdf8e3c57dae
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_display_data_on_image
@@ -110,65 +110,65 @@ tools:
 - name: cp_enhance_or_suppress_features
   owner: bgruening
   revisions:
-  - 11f177b1a59e
   - f2ed92b011a9
+  - 11f177b1a59e
   - bace5a93a97c
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_export_to_spreadsheet
   owner: bgruening
   revisions:
-  - f24c370e5ea4
   - f8fa0f6718a3
+  - f24c370e5ea4
   - d0178bdcd00e
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_gray_to_color
   owner: bgruening
   revisions:
-  - 31d195bedf6d
   - ad271f78a87a
+  - 31d195bedf6d
   - 3245681b2f6d
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_identify_primary_objects
   owner: bgruening
   revisions:
-  - 87d4d92d7487
   - b6eec6087271
   - 993faa34333b
+  - 87d4d92d7487
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_image_math
   owner: bgruening
   revisions:
-  - 6100a22bf4f2
   - ff1a86a87364
   - c09dcda1143f
+  - 6100a22bf4f2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_mask_image
   owner: bgruening
   revisions:
+  - 3a05117669cf
   - 667a513e67e4
   - b178453ea8d1
-  - 3a05117669cf
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_granularity
   owner: bgruening
   revisions:
-  - a1a961c46d4b
   - ac5bea85a391
   - 2564f461de62
+  - a1a961c46d4b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_area_occupied
   owner: bgruening
   revisions:
-  - 20dbb1f7ec7b
   - 91e03287f285
   - a32c3f810ade
+  - 20dbb1f7ec7b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_intensity
@@ -182,9 +182,9 @@ tools:
 - name: cp_measure_image_quality
   owner: bgruening
   revisions:
-  - d3890df07463
   - e972e07c7845
   - 6f4715b8540a
+  - d3890df07463
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_intensity
@@ -199,16 +199,16 @@ tools:
   owner: bgruening
   revisions:
   - acf3aa487283
-  - d85f11570109
   - 79e10d12d90a
+  - d85f11570109
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_texture
   owner: bgruening
   revisions:
   - b76841ee5560
-  - 80b200ae516b
   - 035a58c7f54a
+  - 80b200ae516b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_overlay_outlines
@@ -220,9 +220,9 @@ tools:
 - name: cp_relate_objects
   owner: bgruening
   revisions:
-  - 3a3033222f61
-  - 48102a685037
   - 8083a87d2fdf
+  - 48102a685037
+  - 3a3033222f61
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_save_images
@@ -242,23 +242,23 @@ tools:
 - name: cp_track_objects
   owner: bgruening
   revisions:
-  - 1fd453cd757b
   - 972d2c365739
+  - 1fd453cd757b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: idr_download_by_ids
   owner: iuc
   revisions:
-  - f92941d1a85e
   - 4b794652dcdc
+  - f92941d1a85e
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: image_info
   owner: imgteam
   revisions:
+  - 236ec78b2e53
   - 7b6d9412c7f8
   - f8b4eada923c
-  - 236ec78b2e53
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: overlay_images
diff --git a/staging.gvl.org.au/ivar.yml b/staging.gvl.org.au/ivar.yml
index 5c726792c..a139c6ce8 100644
--- a/staging.gvl.org.au/ivar.yml
+++ b/staging.gvl.org.au/ivar.yml
@@ -2,93 +2,93 @@ tools:
 - name: ivar_consensus
   owner: iuc
   revisions:
+  - 3e4f434a69c6
+  - 40737febe339
   - f362150bef41
+  - e319b5b65879
+  - 3a72fede57ce
   - 78bbd17d0703
   - 1069f6db0a0e
-  - 3e4f434a69c6
   - d6e72da3ec35
-  - 3a72fede57ce
   - a38934e303b9
   - e4ee04da1c19
-  - 40737febe339
-  - e319b5b65879
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_filtervariants
   owner: iuc
   revisions:
+  - 0135f1d487a0
   - 2b95d5c04908
-  - c88553ec696e
+  - 7fe36019c073
   - 618297d23022
-  - 72ddd32392cd
   - 9537184d421f
-  - fcbeda41d0ac
   - f91cfb73d369
-  - 0135f1d487a0
-  - 7fe36019c073
   - 8f8df367470d
+  - fcbeda41d0ac
+  - c88553ec696e
+  - 72ddd32392cd
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_getmasked
   owner: iuc
   revisions:
-  - d7e79eb3bcb3
-  - ad0dc9f4c9e2
-  - 2cf4a1cafc16
   - fafb3d685fa9
+  - 2cf4a1cafc16
+  - ad0dc9f4c9e2
+  - d7e79eb3bcb3
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_removereads
   owner: iuc
   revisions:
-  - 43aac8d29685
+  - bd2a7d1316b9
+  - 3d18f8c3c0f6
+  - 8d36959b000d
+  - 7f1cfa4c0e32
   - ee2beb764a7b
   - 8c05afb547fa
-  - 7f1cfa4c0e32
-  - bd2a7d1316b9
+  - a1c2aecd7a0d
+  - 9eaadf03e0df
+  - 6a1515bb0687
   - 5dc33613c288
-  - 28a6f1908fcc
+  - 43aac8d29685
   - 94df24c6bc00
-  - 6a1515bb0687
-  - 8d36959b000d
-  - 9eaadf03e0df
-  - a1c2aecd7a0d
-  - 3d18f8c3c0f6
+  - 28a6f1908fcc
   - ee29337f905c
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_trim
   owner: iuc
   revisions:
-  - cb903c9dc33d
-  - 9f978da6528a
-  - 364f4ffec275
-  - 5d6ed46cc101
-  - e3bb03cf207a
+  - 8858fa037a15
   - c092052ed673
-  - 5671e1d3d5ee
+  - 9f978da6528a
   - db536ad45f28
+  - e3bb03cf207a
   - 86a20ae274fc
-  - 8858fa037a15
+  - cb903c9dc33d
   - d37ede8589b2
   - bcaa0d571ce2
+  - 364f4ffec275
+  - 5671e1d3d5ee
   - a250929be21b
+  - 5d6ed46cc101
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_variants
   owner: iuc
   revisions:
-  - c5c9f02b6167
   - 194e3ceee923
-  - e1a015876aa9
+  - 230b05597996
   - 49236b03e4fd
-  - 584beffa972b
-  - 38b91a3190cd
   - f95f403841ad
-  - 3b6a16d82c1b
-  - 230b05597996
+  - e1a015876aa9
+  - c5c9f02b6167
   - abbc8041e8ec
+  - 584beffa972b
   - 12d66d0d05ac
   - ed28dd32141c
+  - 38b91a3190cd
+  - 3b6a16d82c1b
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/join_subtract_and_group.yml b/staging.gvl.org.au/join_subtract_and_group.yml
index 23632eb25..d8ef5475e 100644
--- a/staging.gvl.org.au/join_subtract_and_group.yml
+++ b/staging.gvl.org.au/join_subtract_and_group.yml
@@ -2,19 +2,19 @@ tools:
 - name: datamash_reverse
   owner: iuc
   revisions:
+  - 0f1724dd59d2
+  - f198773344e4
   - b8a457820315
   - 17e3b698dd52
-  - f198773344e4
-  - 0f1724dd59d2
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: datamash_transpose
   owner: iuc
   revisions:
-  - ba0c40780ecf
   - ac092723240d
+  - a513e3fbb4c5
   - 22c2a1ac7ae3
+  - ba0c40780ecf
   - 374cb875d38a
-  - a513e3fbb4c5
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/machine_learning.yml b/staging.gvl.org.au/machine_learning.yml
index ad7e7a754..fb66e63e9 100644
--- a/staging.gvl.org.au/machine_learning.yml
+++ b/staging.gvl.org.au/machine_learning.yml
@@ -10,29 +10,29 @@ tools:
 - name: keras_model_config
   owner: bgruening
   revisions:
+  - 4d81e3e2fb63
   - f22a9297440f
   - 8a794e6d3388
-  - 4d81e3e2fb63
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_train_and_eval
   owner: bgruening
   revisions:
-  - e1317b5502fa
   - b6ef6d0cb6b7
-  - f1b9a42d6809
   - 2af1346e68c9
+  - e1317b5502fa
   - 818f9b69d8a0
+  - f1b9a42d6809
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ml_visualization_ex
   owner: bgruening
   revisions:
   - 05143043ca13
-  - 1588f9076e32
-  - 947c2eacccb8
   - c80db5d6fd8c
   - 8334dc98c48e
+  - 1588f9076e32
+  - 947c2eacccb8
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: model_prediction
@@ -48,53 +48,53 @@ tools:
 - name: sklearn_ensemble
   owner: bgruening
   revisions:
-  - f3dfa4bdf87e
-  - 060ca94ac049
-  - 53616c8b0865
+  - 1a53edc4b438
   - 841a6cc5fc58
   - a07ab242b0b5
-  - 1a53edc4b438
+  - 53616c8b0865
+  - f3dfa4bdf87e
+  - 060ca94ac049
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_generalized_linear
   owner: bgruening
   revisions:
-  - 927586a18553
+  - 91c4e3331208
   - 2fc89dcd41c8
-  - dc4b5fd604a6
-  - 40f4447733b2
   - d4808d5b83da
-  - 91c4e3331208
+  - 927586a18553
+  - 40f4447733b2
+  - dc4b5fd604a6
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_searchcv
   owner: bgruening
   revisions:
+  - 25ab6b4e376e
   - c6ae57f774c6
-  - e5a5ad882f1f
+  - 36e8d6d5d01b
   - 301e07345c93
   - 7626ea9c2e1b
-  - 25ab6b4e376e
-  - 36e8d6d5d01b
+  - e5a5ad882f1f
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_svm_classifier
   owner: bgruening
   revisions:
+  - 0630258dcf35
   - 4ed102b922cb
   - 80852884053f
   - b7c3e9a3b954
   - f9639b488779
-  - 0630258dcf35
   - 02d2be90dedb
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_to_categorical
   owner: bgruening
   revisions:
+  - ec69cbe34b73
   - caeb57858702
-  - 14180f9c831e
   - 61634a87efc7
-  - ec69cbe34b73
+  - 14180f9c831e
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/mapping.yml b/staging.gvl.org.au/mapping.yml
index 0a36e8de2..4807663da 100644
--- a/staging.gvl.org.au/mapping.yml
+++ b/staging.gvl.org.au/mapping.yml
@@ -2,17 +2,17 @@ tools:
 - name: bowtie2
   owner: devteam
   revisions:
-  - 03e9b2fbc005
   - f6877ad76b00
-  - 3ba8d4563129
-  - 0d4acadabb04
+  - cd659e8cc5fa
+  - 03e9b2fbc005
   - d5ceb9f3c25b
+  - 017aba02828d
   - 749c918495f7
+  - 3ba8d4563129
+  - 937aa69e715f
   - a6d65b0c67af
-  - cd659e8cc5fa
   - 17062a0decb7
-  - 937aa69e715f
-  - 017aba02828d
+  - 0d4acadabb04
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bowtie_wrappers
@@ -24,19 +24,19 @@ tools:
 - name: bwa_mem2
   owner: iuc
   revisions:
-  - bfaa0d22c2e4
   - b4a22d90cce9
+  - bfaa0d22c2e4
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bwa
   owner: devteam
   revisions:
-  - 3fe632431b68
+  - e188dc7a68e6
   - 64f11cf59c6e
+  - dfd8b7f78c37
   - 53646aaaafef
-  - e188dc7a68e6
   - 2477830927ec
-  - dfd8b7f78c37
+  - 3fe632431b68
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lastz_paired_reads
@@ -48,46 +48,46 @@ tools:
 - name: lastz
   owner: devteam
   revisions:
-  - 2ff111fac1d7
+  - e7f19d6a9af8
+  - 37b497aa133f
   - 3e1ea2facca6
   - 60afcc2c1d05
-  - 37b497aa133f
-  - e7f19d6a9af8
+  - 2ff111fac1d7
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minimap2
   owner: iuc
   revisions:
-  - b3eab4b67562
-  - be1d967337e4
-  - f54f5baedfdd
   - 77b2770508f6
-  - 3f4d6399997b
-  - 53c0b7a1a0c3
+  - 8c6cd2650d1f
   - 5cc34c3f440d
+  - b3eab4b67562
+  - c0c2d0941de8
+  - f54f5baedfdd
   - 6b1e195506a3
+  - 3f4d6399997b
+  - 11a0d50a54e6
   - 037c6e54df11
-  - c0c2d0941de8
+  - 53c0b7a1a0c3
+  - be1d967337e4
   - 09b53c1d4ab1
-  - 11a0d50a54e6
-  - 8c6cd2650d1f
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rna_starsolo
   owner: iuc
   revisions:
-  - 13022c3d3076
-  - ec9cbd6b9a49
-  - b8f5f6e87f5c
   - 5ef7ec16b04f
+  - ec9cbd6b9a49
   - 00fbfac99d39
-  - 178bdbdb6d24
-  - 79b885ce78d7
-  - 45795f582ae9
   - 42ce70172b72
+  - 13022c3d3076
+  - b8f5f6e87f5c
+  - 79b885ce78d7
   - 1cd2511a396e
-  - 9ee34ba73ebf
+  - 178bdbdb6d24
   - e403d27e8f24
+  - 9ee34ba73ebf
+  - 45795f582ae9
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: star_fusion
diff --git a/staging.gvl.org.au/metabolomics.yml b/staging.gvl.org.au/metabolomics.yml
index d49bf9abf..b19e9f85e 100644
--- a/staging.gvl.org.au/metabolomics.yml
+++ b/staging.gvl.org.au/metabolomics.yml
@@ -14,8 +14,8 @@ tools:
 - name: biotransformer
   owner: recetox
   revisions:
-  - 6cd2a9e6ac49
   - 90dc951da294
+  - 6cd2a9e6ac49
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: camera_annotate
@@ -93,22 +93,22 @@ tools:
 - name: matchms_convert
   owner: recetox
   revisions:
-  - b9cc12600553
   - c990df6afc24
+  - b9cc12600553
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_filtering
   owner: recetox
   revisions:
-  - a177ac3c752c
   - 00e66c401366
+  - a177ac3c752c
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_fingerprint_similarity
   owner: recetox
   revisions:
-  - 84af792d3a78
   - d7b517f2c5fe
+  - 84af792d3a78
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_formatter
@@ -121,8 +121,8 @@ tools:
 - name: matchms_metadata_export
   owner: recetox
   revisions:
-  - b576ed720711
   - f04610d25411
+  - b576ed720711
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_metadata_match
@@ -141,8 +141,8 @@ tools:
 - name: matchms_networking
   owner: recetox
   revisions:
-  - 8147d93d372d
   - 1d74ae228df3
+  - 8147d93d372d
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_remove_key
@@ -192,8 +192,8 @@ tools:
 - name: msmetaenhancer
   owner: recetox
   revisions:
-  - 90745ecc5e9f
   - b5467dead5b1
+  - 90745ecc5e9f
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msnbase_readmsdata
@@ -255,9 +255,9 @@ tools:
 - name: recetox_aplcms_align_features
   owner: recetox
   revisions:
-  - c53a97599181
-  - 79ad928a0dae
   - 7b42ee54d757
+  - 79ad928a0dae
+  - c53a97599181
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_compute_clusters
@@ -272,16 +272,16 @@ tools:
   owner: recetox
   revisions:
   - dfebc82ba1f0
-  - 134be5abb208
   - 481d769e2f7a
+  - 134be5abb208
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_correct_time
   owner: recetox
   revisions:
-  - 9064aecc78a7
-  - 51332c2520c7
   - 02c772a49998
+  - 51332c2520c7
+  - 9064aecc78a7
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_generate_feature_table
@@ -295,16 +295,16 @@ tools:
 - name: recetox_aplcms_merge_known_table
   owner: recetox
   revisions:
-  - dd7bbc2b99d1
-  - cf061712a184
   - 17a48d0a80f4
+  - cf061712a184
+  - dd7bbc2b99d1
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_recover_weaker_signals
   owner: recetox
   revisions:
-  - 24278c6b6d1c
   - d7f5878a98c3
+  - 24278c6b6d1c
   - 99d118321d5f
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -344,8 +344,8 @@ tools:
 - name: rmassbank
   owner: recetox
   revisions:
-  - 0b28816c1c2c
   - 5a6bb93ec656
+  - 0b28816c1c2c
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spec2vec_similarity
@@ -375,8 +375,8 @@ tools:
 - name: use_theoretical_mz_annotations
   owner: recetox
   revisions:
-  - b3d41b1fcb18
   - e0cac9994a72
+  - b3d41b1fcb18
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: w4mclassfilter
diff --git a/staging.gvl.org.au/metagenomic_analysis.yml b/staging.gvl.org.au/metagenomic_analysis.yml
index 15ec343c9..92b876b73 100644
--- a/staging.gvl.org.au/metagenomic_analysis.yml
+++ b/staging.gvl.org.au/metagenomic_analysis.yml
@@ -97,19 +97,19 @@ tools:
   revisions:
   - 7c2100246a2f
   - 63f86089423e
+  - 65db807336bc
   - 76d3d2b10738
   - 5b5a7af9fbb4
-  - 65db807336bc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_dada
   owner: iuc
   revisions:
+  - 96336c6a2bb7
   - 00f5005840fa
   - 1c35dadbe76f
   - 18a502a9d287
   - 84fd33a60b35
-  - 96336c6a2bb7
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_filterandtrim
@@ -118,77 +118,77 @@ tools:
   - e8fba04706d3
   - a9f4a217dcd6
   - addaf9d22850
-  - 34e55239e68b
   - f732237754fc
+  - 34e55239e68b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_learnerrors
   owner: iuc
   revisions:
   - 04c15826a0b8
-  - 5fe3edf19b9c
   - 0776d824d896
   - 8c202e741d68
+  - 5fe3edf19b9c
   - 75403243703a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_makesequencetable
   owner: iuc
   revisions:
-  - 43c99742158b
+  - 1c9b3bcd4261
   - 75c8945b0da2
   - e96bbb9e24ea
+  - 43c99742158b
   - 8470de786d47
-  - 1c9b3bcd4261
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_mergepairs
   owner: iuc
   revisions:
-  - 5c865a382933
-  - 306a40d4bb8f
   - 35176674168c
-  - 84743da21318
+  - 306a40d4bb8f
+  - 5c865a382933
   - 1d75bd0595e2
+  - 84743da21318
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotcomplexity
   owner: iuc
   revisions:
-  - 8daf4564ccda
-  - 32c9ea835770
-  - ac72310b038a
   - 555ccac8a4c5
+  - ac72310b038a
   - 78faebd0879c
+  - 32c9ea835770
+  - 8daf4564ccda
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotqualityprofile
   owner: iuc
   revisions:
-  - f947b4bb5107
   - cae017b76acb
-  - a58e4a43f49c
   - d60df8727f59
   - 7b8cb2b02978
+  - a58e4a43f49c
+  - f947b4bb5107
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_removebimeradenovo
   owner: iuc
   revisions:
-  - 1bc3657cd694
-  - 04144473e59e
   - 073608a50ac3
+  - 04144473e59e
   - 7136e9ab70db
   - 7f3b59dee073
+  - 1bc3657cd694
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_seqcounts
   owner: iuc
   revisions:
-  - 19299bb1c6af
-  - d943081510da
   - 0a1224c4b781
+  - d943081510da
   - 9058d8943303
+  - 19299bb1c6af
   - a7817705348e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -202,29 +202,29 @@ tools:
 - name: gtdbtk_classify_wf
   owner: iuc
   revisions:
+  - 65d52c693b8e
   - dbf1798c0dcc
-  - 5c7ba3d85a01
-  - b907a3c0434f
   - a68b985913ab
-  - 4d9445dff47b
+  - b907a3c0434f
   - c4db8c4de66f
-  - 65d52c693b8e
   - f8f56dd6449f
+  - 5c7ba3d85a01
+  - 4d9445dff47b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiasm_meta
   owner: galaxy-australia
   revisions:
-  - 213df31ba341
   - 15dbb444df71
+  - 213df31ba341
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_genefamilies_genus_level
   owner: iuc
   revisions:
-  - 654548ae1357
-  - 6d364c65c946
   - 6c84982ee6f7
+  - 6d364c65c946
+  - 654548ae1357
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_join_tables
@@ -236,8 +236,8 @@ tools:
 - name: humann2_regroup_table
   owner: iuc
   revisions:
-  - bd7a9c6efb10
   - e66ab198ec15
+  - bd7a9c6efb10
   - 6aad8ca3918b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -245,16 +245,16 @@ tools:
   owner: iuc
   revisions:
   - d77397f09da1
-  - c6676a890f50
   - b084117133af
+  - c6676a890f50
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_unpack_pathways
   owner: iuc
   revisions:
-  - cad93abecac9
-  - 7f208f1eb64f
   - 9704f1a3b32d
+  - 7f208f1eb64f
+  - cad93abecac9
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2
@@ -286,40 +286,40 @@ tools:
 - name: humann_reduce_table
   owner: iuc
   revisions:
-  - 6552df6efe6b
   - 60749924ad62
+  - 6552df6efe6b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_regroup_table
   owner: iuc
   revisions:
-  - 79706f10d680
+  - e88b731dad59
   - 8237a0f225db
-  - 31c6d107e7a5
+  - 79706f10d680
   - c409a495841f
-  - e88b731dad59
+  - 31c6d107e7a5
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rename_table
   owner: iuc
   revisions:
-  - 172920f67a84
-  - 71ea608ddfa3
+  - 094ad9c068af
   - 714d5a28cc5c
+  - 172920f67a84
   - d24841f5c3d2
-  - 094ad9c068af
   - aabf8cfb8fef
+  - 71ea608ddfa3
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_renorm_table
   owner: iuc
   revisions:
+  - 2bdd84912a2b
+  - 12fb63b5f63f
   - 4137b492233e
-  - d7e9a3c41657
   - a293a742194f
-  - 2bdd84912a2b
+  - d7e9a3c41657
   - a4d7148ccee4
-  - 12fb63b5f63f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rna_dna_norm
@@ -332,19 +332,19 @@ tools:
   owner: iuc
   revisions:
   - 6fcb8ac37a3e
-  - 97f7bb0851e7
-  - e2c71b852aba
+  - 64bc7acc22a9
   - 75bedfb2078b
-  - a92c06a3afa7
   - cf87759761eb
-  - 64bc7acc22a9
+  - a92c06a3afa7
+  - e2c71b852aba
+  - 97f7bb0851e7
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_split_table
   owner: iuc
   revisions:
-  - e9d12c223a80
   - 81c5dd1c777f
+  - e9d12c223a80
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_strain_profiler
@@ -357,21 +357,21 @@ tools:
   owner: iuc
   revisions:
   - 5e5a999ffaa9
-  - 4033827c76b8
-  - 080ea153677c
   - c82508e76ad1
+  - 4033827c76b8
   - 2d35528d2141
   - 4e5e73d03f0d
+  - 080ea153677c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann
   owner: iuc
   revisions:
   - 6b7622dda516
-  - 95bf7479d53c
-  - fc6c328c292f
   - 2cd76b089570
+  - 95bf7479d53c
   - c2803012bbb3
+  - fc6c328c292f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan5
@@ -397,29 +397,29 @@ tools:
 - name: khmer_abundance_distribution
   owner: iuc
   revisions:
-  - 7624945cacd3
   - e699e2747356
+  - 7624945cacd3
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_count_median
   owner: iuc
   revisions:
-  - b3d513c7093e
   - 570505540a7b
+  - b3d513c7093e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_extract_partitions
   owner: iuc
   revisions:
-  - adb3dd5a899f
   - 1061711538c6
+  - adb3dd5a899f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_filter_abundance
   owner: iuc
   revisions:
-  - b86562b4f3fd
   - 29a4d6e2ae9c
+  - b86562b4f3fd
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_filter_below_abundance_cutoff
@@ -452,9 +452,9 @@ tools:
 - name: kraken2
   owner: iuc
   revisions:
+  - 20e2f64aa1fe
   - 4a9da2b6c2e3
   - cdee7158adf3
-  - 20e2f64aa1fe
   - 328c607150ff
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -474,22 +474,22 @@ tools:
 - name: kraken_filter
   owner: devteam
   revisions:
-  - 67236d921e83
   - 5bee9adae474
+  - 67236d921e83
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_report
   owner: devteam
   revisions:
-  - 1c677354ab18
   - 6c09bed3444f
+  - 1c677354ab18
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_taxonomy_report
   owner: iuc
   revisions:
-  - 27d65c78863c
   - bfae8da6082c
+  - 27d65c78863c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_translate
@@ -533,8 +533,8 @@ tools:
 - name: krakentools_kreport2krona
   owner: iuc
   revisions:
-  - 88d274322340
   - 2deaada69b14
+  - 88d274322340
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krakentools_kreport2mpa
@@ -570,21 +570,21 @@ tools:
 - name: merge_metaphlan_tables
   owner: iuc
   revisions:
-  - 327d9f4cc95f
-  - 4fd3b5d8706b
-  - 7f5d7b0e9884
+  - 2cff76cf35c6
   - 0270541aaf46
-  - 27250f92a01a
   - 3cc4a60615c0
-  - 2cff76cf35c6
+  - 27250f92a01a
+  - 7f5d7b0e9884
+  - 4fd3b5d8706b
   - e073891b2afc
+  - 327d9f4cc95f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metabat2
   owner: iuc
   revisions:
-  - 76bc4efa1aeb
   - 708abf08a626
+  - 76bc4efa1aeb
   - eb50e7eca3dc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -651,33 +651,33 @@ tools:
 - name: metaphlan2krona
   owner: iuc
   revisions:
-  - fdbd63e92b01
   - ebb74774457e
+  - fdbd63e92b01
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaphlan
   owner: iuc
   revisions:
+  - b89b0765695d
+  - a16313517e55
+  - 740fd2d16a28
   - 289b3807e80c
-  - ec368db926f4
+  - ff8f55893e7d
   - 6dee4abadccb
-  - fd69c607b43f
-  - a16313517e55
-  - b89b0765695d
-  - 1a6cdf55390f
-  - a92a632c4d9b
   - 1a037928504c
   - 2131d7dca455
-  - 740fd2d16a28
+  - 1a6cdf55390f
+  - a92a632c4d9b
   - ef65b083bd0c
-  - ff8f55893e7d
+  - fd69c607b43f
+  - ec368db926f4
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metawrapmg_binning
   owner: galaxy-australia
   revisions:
-  - e3a64a1d2a6e
   - 2a8bc1d26d06
+  - e3a64a1d2a6e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyloseq_filter
@@ -695,22 +695,22 @@ tools:
 - name: picrust2_add_descriptions
   owner: iuc
   revisions:
-  - 6034c3f3ecf0
   - 2f47a294ef49
+  - 6034c3f3ecf0
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_hsp
   owner: iuc
   revisions:
-  - 3b133b8d578a
   - 6eafc1e01a8c
+  - 3b133b8d578a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_metagenome_pipeline
   owner: iuc
   revisions:
-  - 709adbfcf308
   - 415cb5d91168
+  - 709adbfcf308
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_pathway_pipeline
@@ -723,8 +723,8 @@ tools:
 - name: picrust2_pipeline
   owner: iuc
   revisions:
-  - d6bb2e3febda
   - 540aedfc81c7
+  - d6bb2e3febda
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_place_seqs
@@ -750,8 +750,8 @@ tools:
 - name: picrust_compare_biom
   owner: iuc
   revisions:
-  - 8e2ac1b8f70a
   - 0ba7dfaa941d
+  - 8e2ac1b8f70a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_format_tree_and_trait_table
@@ -769,8 +769,8 @@ tools:
 - name: picrust_normalize_by_copy_number
   owner: iuc
   revisions:
-  - 65e5f9caefcc
   - 2e62e32d4f33
+  - 65e5f9caefcc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_predict_metagenomes
@@ -813,13 +813,13 @@ tools:
 - name: staramr
   owner: nml
   revisions:
+  - be818ae858e4
+  - aeaa20b96ef2
+  - 3b22de20bd4b
   - 4b9a8031ab74
   - 141afacabcfa
-  - 2fd4d4c9c5c2
   - 4d83eccf5f81
-  - aeaa20b96ef2
-  - be818ae858e4
-  - 3b22de20bd4b
+  - 2fd4d4c9c5c2
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: usearch_cluster_otus
@@ -849,8 +849,8 @@ tools:
 - name: vsearch
   owner: iuc
   revisions:
-  - b3c7199d8786
   - 9495df9dd6ef
+  - b3c7199d8786
   - 576963db5f1b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/mothur.yml b/staging.gvl.org.au/mothur.yml
index a7ff28214..524ad9f69 100644
--- a/staging.gvl.org.au/mothur.yml
+++ b/staging.gvl.org.au/mothur.yml
@@ -80,8 +80,8 @@ tools:
 - name: mothur_chimera_vsearch
   owner: iuc
   revisions:
-  - 12e856482d26
   - bdb4a58a2025
+  - 12e856482d26
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_chop_seqs
@@ -405,8 +405,8 @@ tools:
 - name: mothur_make_contigs
   owner: iuc
   revisions:
-  - 7238968f58f7
   - ab12df91b47f
+  - 7238968f58f7
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_make_design
@@ -732,8 +732,8 @@ tools:
 - name: mothur_summary_single
   owner: iuc
   revisions:
-  - 72be09dfd803
   - 2344ed181ae6
+  - 72be09dfd803
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_tax
diff --git a/staging.gvl.org.au/multiple_alignments.yml b/staging.gvl.org.au/multiple_alignments.yml
index b0c83057a..4000ea187 100644
--- a/staging.gvl.org.au/multiple_alignments.yml
+++ b/staging.gvl.org.au/multiple_alignments.yml
@@ -2,39 +2,39 @@ tools:
 - name: cactus_cactus
   owner: galaxy-australia
   revisions:
-  - 9baa871cb1d1
-  - 9eeb13a92d79
   - 80f03df2e2ce
-  - 48c13389050d
-  - 9422c5a87ee2
-  - 098506c54016
-  - cd07731e4434
-  - a74dbfee5a86
-  - bdfbaf0c10aa
+  - 9eeb13a92d79
   - 6ae5a7b5a0a2
-  - 2263989660f5
   - 94b8c6013083
+  - 2263989660f5
+  - cd07731e4434
+  - 9422c5a87ee2
+  - 48c13389050d
+  - bdfbaf0c10aa
+  - 9baa871cb1d1
   - 8b67dd48fec1
+  - 098506c54016
+  - a74dbfee5a86
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cactus_export
   owner: galaxy-australia
   revisions:
-  - aaa0d6a8b808
-  - 4a60927aaca5
-  - f0af8936ed41
-  - '764845535798'
+  - f14193ec1f50
   - fc2e49f91e52
-  - be78f13134e2
   - 5abf2c2249aa
+  - aaa0d6a8b808
+  - '764845535798'
   - d390fe1567dc
-  - c44f824c051a
-  - f14193ec1f50
-  - d7ce0ec78e51
   - 2e093badc689
-  - bc3831dd65c1
+  - f0af8936ed41
   - c18157c68134
+  - bc3831dd65c1
+  - d7ce0ec78e51
+  - be78f13134e2
+  - 4a60927aaca5
   - 3ff17bad4006
+  - c44f824c051a
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cdhit
@@ -46,8 +46,8 @@ tools:
 - name: chromeister
   owner: iuc
   revisions:
-  - e483be1014b6
   - b768cc4cca40
+  - e483be1014b6
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: clustalw
@@ -60,60 +60,60 @@ tools:
 - name: gecko
   owner: iuc
   revisions:
-  - 5efbd15675ca
   - 1de657a3198d
+  - 5efbd15675ca
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mafft
   owner: rnateam
   revisions:
-  - bf28a8cff401
-  - 6f28e90db932
-  - f1a5908ea2cb
   - a65296ffb4a0
   - f0d493f8f84f
+  - 15974dd17515
+  - 6f28e90db932
+  - f1a5908ea2cb
+  - bf28a8cff401
   - c5908940967d
   - 8e649f27aa0d
-  - 15974dd17515
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_delta_filter
   owner: iuc
   revisions:
+  - e8fdceffea4c
   - b3acbb3a6af0
   - fbca557a4847
-  - e8fdceffea4c
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_dnadiff
   owner: iuc
   revisions:
+  - 60698466facd
   - 5561a1193611
   - c9685bc0407c
-  - 60698466facd
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummer
   owner: iuc
   revisions:
-  - bcd65de9725b
   - 57f042937ba7
+  - bcd65de9725b
   - 48823c9635a4
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummerplot
   owner: iuc
   revisions:
-  - ebe3b0f84de9
-  - fb43e8887350
   - 4fc0cb2ac8ae
+  - fb43e8887350
+  - ebe3b0f84de9
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_nucmer
   owner: iuc
   revisions:
-  - 636b049e6141
   - e18267f90096
+  - 636b049e6141
   - 7cd7a55a678d
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -121,7 +121,7 @@ tools:
   owner: iuc
   revisions:
   - 959c1f8dae95
-  - b4124df98b26
   - cf3c9489c088
+  - b4124df98b26
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/nanopore.yml b/staging.gvl.org.au/nanopore.yml
index 9cfe4a3a4..d2364a5f6 100644
--- a/staging.gvl.org.au/nanopore.yml
+++ b/staging.gvl.org.au/nanopore.yml
@@ -8,16 +8,16 @@ tools:
 - name: dorado_pod5_convert
   owner: galaxy-australia
   revisions:
-  - 18a8d140ec6f
   - 28928576e1ea
+  - 18a8d140ec6f
   - 7c47b3c9e493
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dorado
   owner: galaxy-australia
   revisions:
-  - fc5b6491cf78
   - 63d8ecfcfab1
+  - fc5b6491cf78
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: guppy_basecaller
@@ -29,21 +29,21 @@ tools:
 - name: medaka_consensus_pipeline
   owner: iuc
   revisions:
-  - 0e9e7fcdd543
   - 79e9a869f40e
   - a7228a7ea146
   - 72b5e9dda577
-  - fc8804320156
+  - 0e9e7fcdd543
   - cb34f00cc10f
+  - fc8804320156
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_consensus
   owner: iuc
   revisions:
+  - db25ec99c3ea
   - fa11aa8103b2
   - d6cddc06aeae
   - 18505fe2bdb1
-  - db25ec99c3ea
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_variant_pipeline
@@ -55,15 +55,15 @@ tools:
 - name: medaka_variant
   owner: iuc
   revisions:
+  - edf6d4003fad
   - eb746fa6f514
+  - 43815fa60f3a
+  - 19f3b583a9b3
+  - 2bf63b38ee9b
   - 222669c4afb6
-  - edf6d4003fad
   - cc36773a3681
   - 0f5f4a208660
   - ec699520444c
-  - 2bf63b38ee9b
-  - 43815fa60f3a
-  - 19f3b583a9b3
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanocompore_sampcomp
@@ -82,13 +82,13 @@ tools:
 - name: nanoplot
   owner: iuc
   revisions:
-  - 7b379e98b9a9
-  - 645159bcee2d
-  - 0f1c34698076
-  - a02b8b3f5a0c
   - a3c4fe6f49ab
   - a38bdcec9e4c
+  - 0f1c34698076
+  - 7b379e98b9a9
+  - 645159bcee2d
   - edbb6c5028f5
+  - a02b8b3f5a0c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_eventalign
@@ -103,16 +103,16 @@ tools:
   owner: bgruening
   revisions:
   - a8d4be409446
-  - 90a922f32523
   - be95355fef8d
+  - 90a922f32523
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_polya
   owner: bgruening
   revisions:
-  - 449e9aeded2d
-  - 4857d5bcce52
   - d376944466bf
+  - 4857d5bcce52
+  - 449e9aeded2d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_variants
@@ -126,9 +126,9 @@ tools:
 - name: porechop
   owner: iuc
   revisions:
-  - 5f76b20953e5
   - 543cbeef3949
   - 93d623d9979c
+  - 5f76b20953e5
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_events
@@ -142,31 +142,35 @@ tools:
   owner: iuc
   revisions:
   - 08064da7b7fb
+  - 7e4f1ed70187
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_hist
   owner: iuc
   revisions:
-  - d1805f9c4c82
   - 47936349f3e9
+  - d1805f9c4c82
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_nucdist
   owner: iuc
   revisions:
   - 5c4fa65f5733
+  - a57b6350fd5d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_occupancy
   owner: iuc
   revisions:
-  - 336791b5665f
   - 0433aad600e9
+  - 338d15b8d6fb
+  - 336791b5665f
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_qualdist
   owner: iuc
   revisions:
+  - ae9060e764b5
   - 72dfdbfab3cc
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -181,6 +185,7 @@ tools:
   owner: iuc
   revisions:
   - ce8af9373061
+  - 34553d0caa5e
   - 26e6c9362b7b
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -194,6 +199,7 @@ tools:
   owner: iuc
   revisions:
   - 5f5f1da94d7f
+  - 2cb2feb94f0e
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_times
@@ -206,13 +212,14 @@ tools:
   owner: iuc
   revisions:
   - 6d93709247c7
+  - 79c1ac92f31b
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_yield_plot
   owner: iuc
   revisions:
-  - 64a83664b814
   - c5c5a3e84989
+  - 64a83664b814
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pycoqc
diff --git a/staging.gvl.org.au/none.yml b/staging.gvl.org.au/none.yml
index 83f96a0bf..e1c0e002c 100644
--- a/staging.gvl.org.au/none.yml
+++ b/staging.gvl.org.au/none.yml
@@ -2,8 +2,8 @@ tools:
 - name: amrfinderplus_data_manager_build
   owner: iuc
   revisions:
-  - 592ef3959907
   - a5921c09b7b7
+  - 592ef3959907
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotation_profiler
@@ -21,8 +21,8 @@ tools:
 - name: bcftools_plugin_color_chrs
   owner: iuc
   revisions:
-  - 4e85a3a5dbd1
   - 71186bb66ca2
+  - 4e85a3a5dbd1
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_frameshifts
@@ -59,19 +59,19 @@ tools:
 - name: data_manager_bakta
   owner: iuc
   revisions:
-  - adfd6bf710bd
+  - 3e73c97f025d
+  - 97b1b5ad1cda
   - d74850cf4e42
+  - adfd6bf710bd
   - baceff842902
-  - 97b1b5ad1cda
-  - 3e73c97f025d
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bowtie2_index_builder
   owner: devteam
   revisions:
   - 1586b111d2a3
-  - 9dd107db92c2
   - 83da94c0e4a6
+  - 9dd107db92c2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_build_bracken_database
@@ -84,17 +84,17 @@ tools:
   owner: iuc
   revisions:
   - 1e34d2e3d285
-  - ed1518ce2237
   - edacc4bcd3cb
   - e4b4837f06f5
+  - ed1518ce2237
   - 2f27f3b86827
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwa_mem_index_builder
   owner: devteam
   revisions:
-  - 46066df8813d
   - 9e993022c762
+  - 46066df8813d
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwameth_index_builder
@@ -106,44 +106,44 @@ tools:
 - name: data_manager_cat
   owner: iuc
   revisions:
-  - 472dabcb03bf
   - 74af283d8ebd
+  - 472dabcb03bf
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_dada2
   owner: iuc
   revisions:
+  - 5711fc06a63e
   - 48a42ca61006
   - 38ccd4589990
-  - 5711fc06a63e
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_diamond_database_builder
   owner: bgruening
   revisions:
-  - 5a0d0bee4f8d
   - 4a08b7b76b78
+  - 5a0d0bee4f8d
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_eggnog_mapper_abspath
   owner: galaxyp
   revisions:
-  - 81a286e4c5a2
   - fcb8bdd124f4
+  - 81a286e4c5a2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_busco
   owner: iuc
   revisions:
-  - 2b4526fdf7fb
   - 15b97817550a
+  - 2b4526fdf7fb
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_genome_dbkeys_all_fasta
   owner: devteam
   revisions:
-  - b1bc53e9bbc5
   - 4d3eff1bc421
+  - b1bc53e9bbc5
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_funannotate
@@ -155,17 +155,17 @@ tools:
 - name: data_manager_gatk_picard_index_builder
   owner: devteam
   revisions:
-  - 9a40272f56d0
   - 6287d0ee459e
+  - 9a40272f56d0
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gemini_database_downloader
   owner: iuc
   revisions:
-  - 5bcf0e24f42c
-  - 172815da3d41
   - b4b2b284230a
   - 27a6a256cd23
+  - 5bcf0e24f42c
+  - 172815da3d41
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gtdbtk_database_installer
@@ -178,8 +178,8 @@ tools:
 - name: data_manager_hisat2_index_builder
   owner: iuc
   revisions:
-  - d74c740bdb25
   - d210e1f185bd
+  - d74c740bdb25
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_humann2_database_downloader
@@ -191,16 +191,16 @@ tools:
 - name: data_manager_humann_database_downloader
   owner: iuc
   revisions:
+  - 19bbd19b74b3
   - 87febc68b45b
   - fea85c467896
-  - 19bbd19b74b3
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_interproscan
   owner: iuc
   revisions:
-  - 0df47f8552f6
   - 7776cb18fdf8
+  - 0df47f8552f6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_kallisto_index_builder
@@ -226,18 +226,18 @@ tools:
   owner: iuc
   revisions:
   - 0cb27ea69dc1
+  - d8dc037e3c13
   - 5fe20c915fa6
-  - 9c43baa60906
   - 4ba60cb14cb0
-  - d8dc037e3c13
+  - 9c43baa60906
   - 2c61c30a57e7
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mitos
   owner: iuc
   revisions:
-  - 14785f8a3725
   - d9339bb8127e
+  - 14785f8a3725
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mothur_toolsuite
@@ -253,8 +253,8 @@ tools:
   revisions:
   - df30a2f1db55
   - 6e24e79d3d69
-  - 29c738066906
   - ed7a967cb11b
+  - 29c738066906
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_pharokka
@@ -272,8 +272,8 @@ tools:
 - name: data_manager_sam_fasta_index_builder
   owner: devteam
   revisions:
-  - 3e4d45aca422
   - ad90c2da4f38
+  - 3e4d45aca422
   - 1865e693d8b2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -301,9 +301,9 @@ tools:
 - name: data_manager_twobit_builder
   owner: devteam
   revisions:
-  - 94a50db37d1a
   - 625fd9476402
   - 9946bc39c834
+  - 94a50db37d1a
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_vep_cache_downloader
@@ -1060,8 +1060,8 @@ tools:
 - name: rdock_rbcavity
   owner: bgruening
   revisions:
-  - 7e5c2e4bc227
   - 744a777e9f90
+  - 7e5c2e4bc227
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rdock_rbdock
@@ -1081,10 +1081,10 @@ tools:
 - name: salsa
   owner: iuc
   revisions:
-  - ba7b0f11e470
-  - 9a22227bb6d0
   - f77f7a7f3b83
   - ab5b7f6b7198
+  - 9a22227bb6d0
+  - ba7b0f11e470
   - 58a870ef434c
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/phylogenetics.yml b/staging.gvl.org.au/phylogenetics.yml
index e3b05b444..b1816024b 100644
--- a/staging.gvl.org.au/phylogenetics.yml
+++ b/staging.gvl.org.au/phylogenetics.yml
@@ -39,66 +39,67 @@ tools:
 - name: hyphy_absrel
   owner: iuc
   revisions:
-  - 81e66674859e
-  - f73435dc282b
-  - a6619171428e
-  - 5a7c56a5cc08
   - d7c7ef3353fe
-  - 8834daeb9892
-  - b89cac5156ec
-  - cce7b18495e4
-  - d033ffc1c161
   - 107d3ba7024a
-  - '841557158611'
+  - 81e66674859e
+  - 5a7c56a5cc08
   - 3f59ebfbfe3d
-  - 6a457678efcb
-  - f04a1264e2a2
-  - 26de3a7b1cb9
   - 3b8b5bde0bd9
+  - a6619171428e
+  - cce7b18495e4
+  - 6a457678efcb
   - c78f3d7dd1db
+  - f73435dc282b
+  - 26de3a7b1cb9
+  - b89cac5156ec
+  - '841557158611'
+  - f04a1264e2a2
+  - 8834daeb9892
+  - d033ffc1c161
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hyphy_gard
   owner: iuc
   revisions:
-  - 5b777002c2de
-  - 3b96e92e8ec3
-  - 6283babe736e
-  - a185b079b095
   - 659517798cc4
-  - aa8cc71438cf
-  - 5fcd1ece3a6e
   - 4755f52427c4
-  - 88c4aa435ded
-  - df47d4845b62
-  - 6223845127ea
+  - 7a2092844346
+  - aa8cc71438cf
+  - 5b777002c2de
+  - a185b079b095
+  - 6a726db04d4b
   - 02b8758214b0
   - b0af57c1a968
-  - 7a2092844346
   - e75442c7f4da
-  - 6a726db04d4b
+  - 3b96e92e8ec3
+  - 6283babe736e
+  - df47d4845b62
+  - 88c4aa435ded
+  - 5fcd1ece3a6e
+  - 6223845127ea
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: iqtree
   owner: iuc
   revisions:
   - 24d024316465
-  - 70acec670c30
-  - d1c340a5664b
-  - b8476e82ac20
   - 111bd54f6bc4
   - f97743d52b87
-  - 0878b7fd5260
+  - f87ac61981f0
   - 524d31add34a
+  - 70acec670c30
+  - 0878b7fd5260
+  - b8476e82ac20
+  - d1c340a5664b
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nextclade
   owner: iuc
   revisions:
+  - 4f6349228462
+  - daddf188c13f
   - 9e10ba792be2
   - feb40665d7cd
-  - daddf188c13f
-  - 4f6349228462
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: orthofinder_onlygroups
@@ -110,26 +111,26 @@ tools:
 - name: pangolin
   owner: iuc
   revisions:
-  - abf6dbe8c9d7
+  - 8ad84c5753ea
+  - 03ed9524dcd1
   - b7e297c2ede6
-  - b6abccb1f25b
+  - ca0d8cf80567
+  - 83a69484cb87
   - 2fa9d4f1b48f
-  - 36912871ccdc
   - 437e28791761
-  - 83a69484cb87
-  - ca0d8cf80567
+  - 36912871ccdc
+  - 3a43c3982401
+  - 9d61d3fa046c
+  - 5f8727ff21e7
   - ca337cce3888
-  - 7bb8726be37c
-  - 03ed9524dcd1
   - a2099fb98cdb
-  - 14ae456b8cc5
-  - 9d61d3fa046c
+  - b6abccb1f25b
+  - 7bb8726be37c
+  - abf6dbe8c9d7
   - 81804a978fc0
-  - 8ad84c5753ea
-  - 2f1019071464
-  - 3a43c3982401
   - 42a174224817
-  - 5f8727ff21e7
+  - 2f1019071464
+  - 14ae456b8cc5
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyml
@@ -151,20 +152,20 @@ tools:
   - 29ff6a849eac
   - ea30d3089354
   - b1e68bbe4cef
+  - ba29b5e2a4be
   - a4b71be30c3c
   - 73a469f7dc96
-  - ba29b5e2a4be
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: roary
   owner: iuc
   revisions:
-  - 91887494eb97
-  - f1ccc8a6eb05
-  - dbe2b2204555
   - e88a7de55d6e
-  - 9b2b122d0415
-  - 15ac71df11a0
   - 809e42326fc2
+  - dbe2b2204555
+  - 15ac71df11a0
+  - f1ccc8a6eb05
+  - 91887494eb97
+  - 9b2b122d0415
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/picard.yml b/staging.gvl.org.au/picard.yml
index 55a5ca45e..08a9617f8 100644
--- a/staging.gvl.org.au/picard.yml
+++ b/staging.gvl.org.au/picard.yml
@@ -2,14 +2,14 @@ tools:
 - name: picard
   owner: devteam
   revisions:
-  - fc288950c3b7
-  - f6ced08779c4
-  - 881d7645d1bf
   - 7d34178f2812
-  - 3f254c5ced1d
-  - b502c227b5e6
   - a1f0b3f4b781
-  - 1aac2a13842a
   - f9242e01365a
+  - b502c227b5e6
+  - 3f254c5ced1d
+  - fc288950c3b7
+  - f6ced08779c4
+  - 1aac2a13842a
+  - 881d7645d1bf
   tool_panel_section_label: Picard
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/proteomic_ai.yml b/staging.gvl.org.au/proteomic_ai.yml
index 39766dfce..9e72a4fcf 100644
--- a/staging.gvl.org.au/proteomic_ai.yml
+++ b/staging.gvl.org.au/proteomic_ai.yml
@@ -2,16 +2,16 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
-  - a58f7eb0df2c
-  - c0e71cb2bd1b
   - 3bd420ec162d
+  - 7fbec959cf2b
+  - 2f7702fd0a4c
+  - 5b85006245f3
   - 6ab1a261520a
   - e4a053d67e24
   - eb085b3dbaf8
   - ca90d17ff51b
-  - 7fbec959cf2b
+  - c0e71cb2bd1b
+  - a58f7eb0df2c
   - d00e15139065
-  - 2f7702fd0a4c
-  - 5b85006245f3
   tool_panel_section_label: Proteomic AI
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/proteomics.yml b/staging.gvl.org.au/proteomics.yml
index 2db8b485a..6576903be 100644
--- a/staging.gvl.org.au/proteomics.yml
+++ b/staging.gvl.org.au/proteomics.yml
@@ -2,53 +2,53 @@ tools:
 - name: cardinal_classification
   owner: galaxyp
   revisions:
-  - ece627528a78
-  - b18329a8ac14
   - 277dc652246e
   - 0a18ac48ac53
-  - b574b84afc4d
-  - f28ad96b76dc
+  - b18329a8ac14
+  - ece627528a78
   - 4c177985028a
+  - f28ad96b76dc
+  - b574b84afc4d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_combine
   owner: galaxyp
   revisions:
+  - a9a28e46d54a
+  - bf06d196e23d
   - e215f71d7983
+  - e988563cc6e5
   - b41107d8fe89
-  - a9a28e46d54a
   - 525f201b86c1
-  - e988563cc6e5
-  - bf06d196e23d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_data_exporter
   owner: galaxyp
   revisions:
-  - 4fbffddde8cd
+  - 8da3511c9467
   - 56da27be956a
   - bb6397b94018
-  - 8da3511c9467
+  - 4fbffddde8cd
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_filtering
   owner: galaxyp
   revisions:
-  - 528fb09022be
-  - f23d67e28cc8
-  - b8c79e70516d
   - 890845926d4b
   - a8157342d9a3
+  - 528fb09022be
+  - b8c79e70516d
+  - f23d67e28cc8
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_mz_images
   owner: galaxyp
   revisions:
-  - 80600735685d
-  - ae304a72db7b
   - 59e85306eae5
+  - ae304a72db7b
   - 25b83cbd596a
   - a95a82eb4d50
+  - 80600735685d
   - a69865da6f80
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -56,40 +56,40 @@ tools:
   owner: galaxyp
   revisions:
   - e0669b1854b1
-  - ed9ed1e6cca2
   - f1897eb07081
   - 83aac7741200
-  - 798da6bdff3d
   - 611d80c0e29d
+  - ed9ed1e6cca2
+  - 798da6bdff3d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_quality_report
   owner: galaxyp
   revisions:
   - a7fb9b395ddf
-  - 5a35e3a8d013
   - 74b61bf5bc4b
+  - 5a35e3a8d013
   - d426a9107a6c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_segmentations
   owner: galaxyp
   revisions:
+  - df2187f9013b
   - cc430977c8ff
   - 91f0f5922011
-  - df2187f9013b
   - 82f6c2f4332d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_spectra_plots
   owner: galaxyp
   revisions:
-  - 043f9c91f686
-  - d2483487e077
-  - ba92b59cd529
   - c5aa9fca18c6
-  - 1693b2126f30
   - 10566783d718
+  - ba92b59cd529
+  - 1693b2126f30
+  - 043f9c91f686
+  - d2483487e077
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: custom_pro_db
@@ -108,9 +108,9 @@ tools:
   owner: galaxyp
   revisions:
   - ff8c9e0e8a7b
+  - bf0728e000cd
   - 9fa3dbf06f17
   - ae4dc0c041f9
-  - bf0728e000cd
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: diapysef
@@ -129,24 +129,24 @@ tools:
 - name: encyclopedia_quantify
   owner: galaxyp
   revisions:
-  - 1c5cbf8f79ce
   - 0fa397f4f40b
   - 4081e4faa4ab
+  - 1c5cbf8f79ce
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_searchtolib
   owner: galaxyp
   revisions:
-  - fb192dd6658a
   - 36880dfd9fa7
+  - fb192dd6658a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_walnut
   owner: galaxyp
   revisions:
   - d6a4dfdad269
-  - 0d2e93e01e68
   - ce1a157a41bd
+  - 0d2e93e01e68
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: flashlfq
@@ -158,9 +158,9 @@ tools:
 - name: maldi_quant_peak_detection
   owner: galaxyp
   revisions:
-  - d286ff4600dd
   - e66f552a3c47
   - 160538a890a6
+  - d286ff4600dd
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maldi_quant_preprocessing
@@ -180,16 +180,16 @@ tools:
 - name: maxquant
   owner: galaxyp
   revisions:
-  - f522c08e900c
+  - 2133b0be850a
   - 97a7f34fcb6a
-  - 837224ad1694
-  - 1f39c833f65f
-  - e42225f8a659
-  - 37d669de2828
   - 7f432d87c82c
   - 4d17fcdeb8ff
-  - 2133b0be850a
+  - 1f39c833f65f
+  - f522c08e900c
   - 9c52362ae7bb
+  - 837224ad1694
+  - e42225f8a659
+  - 37d669de2828
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metanovo
@@ -202,9 +202,9 @@ tools:
   owner: galaxyp
   revisions:
   - 0ed07016d668
-  - 85b8866f06d7
-  - e63db1aa82ee
   - a72ac2c7cc5b
+  - e63db1aa82ee
+  - 85b8866f06d7
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_expand
@@ -219,27 +219,27 @@ tools:
 - name: metaquantome_filter
   owner: galaxyp
   revisions:
+  - 99450519d727
+  - 35cc7ca0bdc7
   - 4f359549383c
   - deaf035bbe9f
-  - 35cc7ca0bdc7
-  - 99450519d727
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_sample
   owner: galaxyp
   revisions:
-  - c7745841de24
   - c1343e3389ca
   - 06f6826d380c
   - e79958768a2c
+  - c7745841de24
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_stat
   owner: galaxyp
   revisions:
-  - da986f83631b
   - b9d453dca8d3
   - d2eac53666f0
+  - da986f83631b
   - d46d64e7964d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -247,32 +247,32 @@ tools:
   owner: galaxyp
   revisions:
   - 944b43462104
-  - 1199751329b0
   - 8bd7734309f6
   - 9bf325045235
+  - 1199751329b0
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: morpheus
   owner: galaxyp
   revisions:
-  - e0104a9f20f0
   - 8295d959ca28
+  - e0104a9f20f0
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msconvert
   owner: galaxyp
   revisions:
-  - 6153e8ada1ee
   - ab6c14374bc0
+  - 6153e8ada1ee
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msstats
   owner: galaxyp
   revisions:
-  - 8212e342e482
   - 28434abe6c5c
   - 593839e1f2c3
   - de7593c29499
+  - 8212e342e482
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msstatstmt
@@ -285,73 +285,73 @@ tools:
 - name: openms_consensusid
   owner: galaxyp
   revisions:
+  - 8960fb791701
   - 01dbaf6a57e0
   - f4be248c3d47
-  - 8960fb791701
   - 4e77b8f12cd3
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_decoydatabase
   owner: galaxyp
   revisions:
-  - 370141bc0da3
-  - 25529df60a81
   - 06cca574e337
+  - 25529df60a81
+  - 370141bc0da3
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_falsediscoveryrate
   owner: galaxyp
   revisions:
-  - 6ccbf9a2072c
-  - 9cdf15d3cfc8
-  - f7fef900f5b2
-  - 518b1730cf2a
   - c9eff69a7c62
+  - 518b1730cf2a
+  - f7fef900f5b2
+  - 9cdf15d3cfc8
+  - 6ccbf9a2072c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_featurefindermultiplex
   owner: galaxyp
   revisions:
-  - ca88bd28f116
   - 5e948629bc73
-  - 9876bda3ec53
   - dff6c756eee5
+  - ca88bd28f116
+  - 9876bda3ec53
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fidoadapter
   owner: galaxyp
   revisions:
   - 41859bbdc16e
-  - 658494a2cb00
-  - 890025d6e426
   - 1595601708ec
+  - 890025d6e426
+  - 658494a2cb00
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileconverter
   owner: galaxyp
   revisions:
+  - 2a93a25f0599
+  - 5ad0b5bf1deb
   - 6634cad7d797
   - 9b7977080f6d
-  - 5ad0b5bf1deb
-  - 2a93a25f0599
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filefilter
   owner: galaxyp
   revisions:
-  - 0bb5056cb775
+  - 05d5e1ddc985
   - fe4e4587d265
+  - 0bb5056cb775
   - d6878d27f051
-  - 05d5e1ddc985
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileinfo
   owner: galaxyp
   revisions:
-  - 52ba9695e752
-  - febd569ad26f
   - 4af67edd5aef
+  - febd569ad26f
   - 5ad830edc021
+  - 52ba9695e752
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filemerger
@@ -366,28 +366,28 @@ tools:
 - name: openms_highresprecursormasscorrector
   owner: galaxyp
   revisions:
-  - 0efbc235f314
-  - d413dc49d650
   - d3546bb9fd8e
   - 9e26f5c770f8
+  - d413dc49d650
+  - 0efbc235f314
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idconflictresolver
   owner: galaxyp
   revisions:
-  - ca1740533b59
-  - c28f13cab67a
   - 8a04ed1c1d1b
+  - ca1740533b59
   - 3720e349ba2a
+  - c28f13cab67a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idfilter
   owner: galaxyp
   revisions:
-  - a5d785af0ad8
   - c55dddc5844a
-  - 382cde407f81
   - ca799a7246e7
+  - a5d785af0ad8
+  - 382cde407f81
   - c427a8628cbe
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -403,69 +403,69 @@ tools:
 - name: openms_idmerger
   owner: galaxyp
   revisions:
-  - 1c5f31b8d632
   - f817513840a9
-  - 34e7afee141d
   - 8d4db262964c
   - 18f93351f8b6
+  - 34e7afee141d
+  - 1c5f31b8d632
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idposteriorerrorprobability
   owner: galaxyp
   revisions:
+  - 111c3a00136d
   - 986e03d3201e
   - 5d9f175dff81
   - c69f69d7867a
-  - 111c3a00136d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idscoreswitcher
   owner: galaxyp
   revisions:
   - 0e52c85f3b15
-  - 476b5e296979
-  - be74a8cd7d66
   - 4204882495f2
+  - be74a8cd7d66
+  - 476b5e296979
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msfraggeradapter
   owner: galaxyp
   revisions:
-  - 9866e1170611
   - e133b5c8878f
+  - 9866e1170611
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msgfplusadapter
   owner: galaxyp
   revisions:
-  - c18d8efa4474
   - f5ec766d80cf
   - 2b2a7551a857
+  - c18d8efa4474
   - a407b6790342
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_multiplexresolver
   owner: galaxyp
   revisions:
-  - 021fdb80f204
   - d0304fb829c0
+  - 021fdb80f204
   - 4e66c4e73909
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_mztabexporter
   owner: galaxyp
   revisions:
-  - bf32e0bcf554
+  - ee860980edc6
   - 2735db4dd8d9
+  - bf32e0bcf554
   - 8098330f6d91
-  - ee860980edc6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathanalyzer
   owner: galaxyp
   revisions:
-  - 0ced5bc9f4dd
   - 08488066d588
+  - 0ced5bc9f4dd
   - a2a6e9551046
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -473,55 +473,55 @@ tools:
   owner: galaxyp
   revisions:
   - de7a553552a6
-  - 8c01da82292c
   - 2a9ff56cb279
+  - 8c01da82292c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathconfidencescoring
   owner: galaxyp
   revisions:
-  - 1bf940c18d93
-  - c1809c05ae8c
   - e8f64a7dc470
+  - c1809c05ae8c
+  - 1bf940c18d93
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdecoygenerator
   owner: galaxyp
   revisions:
+  - f861ec9fbe59
   - 9f505cd4428f
   - 496cf619e311
-  - f861ec9fbe59
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdiaprescoring
   owner: galaxyp
   revisions:
+  - d4396637b9f5
   - 0bddef8d144e
   - c99d5004b74f
-  - d4396637b9f5
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathfilesplitter
   owner: galaxyp
   revisions:
-  - 8b814eafce2c
   - 89254095cbf6
   - 4bb198c0bd3e
+  - 8b814eafce2c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathmzmlfilecacher
   owner: galaxyp
   revisions:
+  - f82b320ceb90
   - f9ed7e074900
   - 05ec9fb05ed1
-  - f82b320ceb90
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathrtnormalizer
   owner: galaxyp
   revisions:
-  - 6e8cc5ed2a9b
   - d31426ef20f6
+  - 6e8cc5ed2a9b
   - 18826fb8e5db
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -536,36 +536,36 @@ tools:
 - name: openms_peakpickerhires
   owner: galaxyp
   revisions:
-  - 5ae104d0da6e
-  - decc397c3b7e
   - 6b01678ec2fc
+  - decc397c3b7e
+  - 5ae104d0da6e
   - 3d8d4ada5405
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_peptideindexer
   owner: galaxyp
   revisions:
-  - d6aca689dd48
-  - 539a3a4dcc9e
+  - dd173849c3d8
   - e039cc5c7aed
+  - 539a3a4dcc9e
   - 5182338d5e7c
-  - dd173849c3d8
+  - d6aca689dd48
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_proteinquantifier
   owner: galaxyp
   revisions:
-  - 8a45fd5a608a
-  - d426affe977c
   - 16026cdb1330
+  - d426affe977c
+  - 8a45fd5a608a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_targetedfileconverter
   owner: galaxyp
   revisions:
   - 9c70a651a53e
-  - dd71e020e2aa
   - 43b9ed22e8ce
+  - dd71e020e2aa
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_textexporter
@@ -579,18 +579,18 @@ tools:
 - name: openms_xmlvalidator
   owner: galaxyp
   revisions:
-  - 78c080d36945
-  - f036e8cf1a55
   - ad2ba3a95a02
+  - f036e8cf1a55
+  - 78c080d36945
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_xtandemadapter
   owner: galaxyp
   revisions:
-  - 5c2a97a234d6
-  - fb52e95a370c
   - c8b225c69a7f
   - 7f6a1f27553e
+  - 5c2a97a234d6
+  - fb52e95a370c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pep_pointer
@@ -616,14 +616,14 @@ tools:
 - name: peptideshaker
   owner: galaxyp
   revisions:
+  - da885ca16cb2
+  - 3634c90301af
   - a72c48001f7c
-  - 943a34df6047
   - 07ff622ec007
   - 3ec27b4cee7c
-  - da885ca16cb2
+  - 943a34df6047
   - 7fdd9119cc4f
   - 1beff3ddce58
-  - 3634c90301af
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: percolator
@@ -683,9 +683,9 @@ tools:
 - name: uniprotxml_downloader
   owner: galaxyp
   revisions:
-  - a371252a2cf6
   - 12692567c7f9
   - 1a5690a5eedc
+  - a371252a2cf6
   - 265c35540faa
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/rad_seq.yml b/staging.gvl.org.au/rad_seq.yml
index b772dff5e..2cd7af503 100644
--- a/staging.gvl.org.au/rad_seq.yml
+++ b/staging.gvl.org.au/rad_seq.yml
@@ -2,12 +2,12 @@ tools:
 - name: stacks2_clonefilter
   owner: iuc
   revisions:
+  - 289b7d6b69a4
+  - 42201b90e3f4
+  - 110a346daf36
   - 2f1d464ebfd2
   - cd5f98911089
   - e345aadf914f
-  - 110a346daf36
-  - 289b7d6b69a4
-  - 42201b90e3f4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_clonefilter
@@ -19,12 +19,12 @@ tools:
 - name: stacks2_cstacks
   owner: iuc
   revisions:
-  - c207119ba5f6
-  - 0cd2df8af811
-  - 0345dbaaa79b
-  - 8501601a118d
   - 42d9087b4789
   - fcce77c09289
+  - c207119ba5f6
+  - 8501601a118d
+  - 0345dbaaa79b
+  - 0cd2df8af811
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_cstacks
@@ -36,12 +36,12 @@ tools:
 - name: stacks2_denovomap
   owner: iuc
   revisions:
-  - 04db7fd6b238
   - 405a212b32ab
-  - 89eb29319bf4
+  - 04db7fd6b238
+  - 33486216eec0
   - 421c33b8bf17
   - ad5ab22ffe24
-  - 33486216eec0
+  - 89eb29319bf4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_denovomap
@@ -53,12 +53,12 @@ tools:
 - name: stacks2_gstacks
   owner: iuc
   revisions:
-  - eb784fa07f80
   - 1d839ead7ad3
+  - eb784fa07f80
+  - f6e91108b7b1
   - fa51dc5e8386
   - 7b72fde3d27e
   - 7370bb65bad4
-  - f6e91108b7b1
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_gstacks
@@ -70,12 +70,12 @@ tools:
 - name: stacks2_kmerfilter
   owner: iuc
   revisions:
+  - c9b77ced9a78
+  - 8a55d29c8fcf
+  - d30e36c48c93
   - 3d70c2996730
   - a3e86cd9cac7
   - 1544278c272e
-  - c9b77ced9a78
-  - d30e36c48c93
-  - 8a55d29c8fcf
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_kmerfilter
@@ -87,12 +87,12 @@ tools:
 - name: stacks2_populations
   owner: iuc
   revisions:
+  - 7b881f5f5ad5
   - b242deb58952
+  - 887cf585cafc
   - e2db212d64ad
-  - 7b881f5f5ad5
-  - a5969aa9347e
   - 564c33e5c3e3
-  - 887cf585cafc
+  - a5969aa9347e
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_populations
@@ -104,11 +104,11 @@ tools:
 - name: stacks2_procrad
   owner: iuc
   revisions:
+  - 9a171f9a450b
+  - e897c74a48bb
   - b4bab607eb05
   - bd5ff77e2036
   - 8cff84759bf6
-  - 9a171f9a450b
-  - e897c74a48bb
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_procrad
@@ -120,12 +120,12 @@ tools:
 - name: stacks2_refmap
   owner: iuc
   revisions:
-  - 887e0991eb24
-  - 33f0793edf93
-  - 6dafad990086
-  - 5e10f396979e
   - adc7a7610d4f
   - 4f65e343ecdf
+  - 33f0793edf93
+  - 887e0991eb24
+  - 5e10f396979e
+  - 6dafad990086
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_refmap
@@ -137,12 +137,12 @@ tools:
 - name: stacks2_shortreads
   owner: iuc
   revisions:
-  - 4e280b27a831
-  - c287418eb288
-  - 17d39bf0a63a
   - c5d7050e4ad7
-  - 97575d01f06b
   - 43e3eeb2e0ec
+  - c287418eb288
+  - 97575d01f06b
+  - 17d39bf0a63a
+  - 4e280b27a831
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_shortreads
@@ -154,12 +154,12 @@ tools:
 - name: stacks2_sstacks
   owner: iuc
   revisions:
-  - 0b8c84a7fdb5
-  - d9bf483266a1
-  - cd034465d4a4
+  - a819ec3b362d
   - 09b8edb56d80
   - 9586f08634c0
-  - a819ec3b362d
+  - cd034465d4a4
+  - d9bf483266a1
+  - 0b8c84a7fdb5
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_sstacks
@@ -171,12 +171,12 @@ tools:
 - name: stacks2_tsv2bam
   owner: iuc
   revisions:
-  - bf0e43ab0416
+  - a4b4bd84f69e
   - a9c34a289493
+  - 2645575d1bf2
+  - bf0e43ab0416
   - 95351dd0fd3f
   - 69842dd5aa48
-  - a4b4bd84f69e
-  - 2645575d1bf2
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_tsv2bam
@@ -188,11 +188,11 @@ tools:
 - name: stacks2_ustacks
   owner: iuc
   revisions:
-  - d033e1ccb386
+  - 912f904a6e1e
+  - 8a35a3bc6752
   - d1fda11e602f
+  - d033e1ccb386
   - bb0475c884ff
-  - 8a35a3bc6752
-  - 912f904a6e1e
   - cfb504394ae1
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -235,9 +235,9 @@ tools:
 - name: stacks_populations
   owner: iuc
   revisions:
+  - 95286af4139b
   - d504d945a655
   - d1fad35bdb4a
-  - 95286af4139b
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_procrad
@@ -267,8 +267,8 @@ tools:
 - name: stacks_sstacks
   owner: iuc
   revisions:
-  - 563af4497055
   - 96de7538bf0c
+  - 563af4497055
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_stats
diff --git a/staging.gvl.org.au/rna_seq.yml b/staging.gvl.org.au/rna_seq.yml
index 445a9f639..9e0341c55 100644
--- a/staging.gvl.org.au/rna_seq.yml
+++ b/staging.gvl.org.au/rna_seq.yml
@@ -2,27 +2,27 @@ tools:
 - name: arriba_draw_fusions
   owner: iuc
   revisions:
-  - cf01dd6c6b1f
+  - 31f8063eedea
   - 2d4e3aff9dc7
   - 7acb00fc980a
-  - 31f8063eedea
+  - cf01dd6c6b1f
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba_get_filters
   owner: iuc
   revisions:
   - 125d20cb23d7
-  - 703a2cb3fb38
   - 32e542c2a773
   - 7a5a2d28c539
+  - 703a2cb3fb38
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba
   owner: iuc
   revisions:
   - 01ccd366690d
-  - 3d61a698e5e1
   - 45c2ec061cf9
+  - 3d61a698e5e1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blockbuster
@@ -34,8 +34,8 @@ tools:
 - name: blockclust
   owner: rnateam
   revisions:
-  - aab6cf87b40a
   - dbb6ee3179bc
+  - aab6cf87b40a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blockclust
@@ -71,9 +71,9 @@ tools:
 - name: cuffcompare
   owner: devteam
   revisions:
-  - e66b9b5b8580
   - ad5d061fbdf2
   - f648e5180e40
+  - e66b9b5b8580
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffcompare
@@ -86,8 +86,8 @@ tools:
   owner: devteam
   revisions:
   - d080005cffe1
-  - 6926716bbfb5
   - e04dbae2abe0
+  - 6926716bbfb5
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cufflinks
@@ -100,9 +100,9 @@ tools:
   owner: devteam
   revisions:
   - 86285ddd4512
-  - 22cf48ad7b16
   - cf747d1bd79a
   - 6a6717a5f421
+  - 22cf48ad7b16
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffmerge
@@ -114,9 +114,9 @@ tools:
 - name: cuffnorm
   owner: devteam
   revisions:
-  - 6cbfede05833
   - 9a854107dbb2
   - 28b94cfbfdb9
+  - 6cbfede05833
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffnorm
@@ -128,8 +128,8 @@ tools:
 - name: cuffquant
   owner: devteam
   revisions:
-  - 93148c05136f
   - 679d93c99757
+  - 93148c05136f
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffquant
@@ -153,10 +153,10 @@ tools:
 - name: describe_samples
   owner: iuc
   revisions:
-  - 0693ccd171c4
+  - 3b36efd62b3e
   - 8f0181aacb7a
   - e3b16fd7dd08
-  - 3b36efd62b3e
+  - 0693ccd171c4
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: describe_samples
@@ -168,13 +168,13 @@ tools:
 - name: deseq2
   owner: iuc
   revisions:
-  - 8fe98f7094de
+  - cd9874cb9019
   - 24a09ca67621
-  - 0696db066a5b
   - 9a882d108833
-  - cd9874cb9019
   - d027d1f4984e
   - 6a3a025714d3
+  - 8fe98f7094de
+  - 0696db066a5b
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deseq2
@@ -186,11 +186,11 @@ tools:
 - name: dexseq
   owner: iuc
   revisions:
-  - b47c006d90c5
   - df929f257179
-  - 9a7c5b6d8f1e
+  - b47c006d90c5
   - 2872c633f07e
   - 62adf13b86ea
+  - 9a7c5b6d8f1e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dexseq
@@ -202,18 +202,18 @@ tools:
 - name: edger
   owner: iuc
   revisions:
+  - 5bf899c13979
   - 3d89af8a44f0
   - 0cb907a2a810
-  - f2843df56434
-  - a8305cf0c951
-  - 334ce9b1bac5
   - ae2aad0a6d50
-  - 5bf899c13979
+  - a8305cf0c951
+  - df0c8d0a5992
   - 6e53e565fc6a
+  - 334ce9b1bac5
+  - f2843df56434
   - 555659de7321
-  - df0c8d0a5992
-  - 9bdff28ae1b1
   - 070900306913
+  - 9bdff28ae1b1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: edger
@@ -225,8 +225,8 @@ tools:
 - name: egsea
   owner: iuc
   revisions:
-  - fba1660fb717
   - 31ea4992b948
+  - fba1660fb717
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: egsea
@@ -245,16 +245,16 @@ tools:
   owner: iuc
   revisions:
   - 6f66ae7c5f7a
+  - af814359d244
+  - 90d16db017d7
+  - a56fbe2d6ba7
   - 38b6d12edc68
   - f9d49f5cb597
+  - ea04b737afa0
   - f3a5f075498f
-  - a56fbe2d6ba7
   - a37612abf7f9
-  - af814359d244
   - 7db9d3ea71c9
-  - 90d16db017d7
   - e6a2a912677a
-  - ea04b737afa0
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: featurecounts
@@ -284,8 +284,8 @@ tools:
 - name: gffcompare
   owner: iuc
   revisions:
-  - 3c5e024a18cf
   - 3c97c841a443
+  - 3c5e024a18cf
   - 0f710191a66d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -304,13 +304,13 @@ tools:
 - name: hisat2
   owner: iuc
   revisions:
-  - 6ab42baa56e9
-  - f4af63aaf57a
   - 26371a1df031
   - 3fb01a8c902d
+  - a86e80d3c09c
+  - f4af63aaf57a
+  - 6ab42baa56e9
   - d4b55e2beb12
   - 6c19daec423d
-  - a86e80d3c09c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hisat2
@@ -328,9 +328,9 @@ tools:
 - name: htseq_count
   owner: lparsons
   revisions:
-  - 67b0b160903a
   - 4418229c501e
   - 916cb26bd9d3
+  - 67b0b160903a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: htseq_count
@@ -348,11 +348,11 @@ tools:
 - name: kallisto_pseudo
   owner: iuc
   revisions:
-  - 87c11c05d238
-  - 01247aaf0a10
-  - 5ae5c312d718
   - 1c75aa5de15e
+  - 01247aaf0a10
+  - 87c11c05d238
   - ce5d418183c5
+  - 5ae5c312d718
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kallisto_pseudo
@@ -365,9 +365,9 @@ tools:
   owner: iuc
   revisions:
   - 4f9c4e6566e5
-  - c971db6f0fe5
-  - 10c98fab6c5a
   - 40985510cd98
+  - 10c98fab6c5a
+  - c971db6f0fe5
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kallisto_quant
@@ -380,13 +380,13 @@ tools:
   owner: iuc
   revisions:
   - 32511f586472
-  - 708348a17fa1
-  - e827f9aae031
-  - d6f5fa4ee473
   - 119b069fc845
-  - 58c35179ebf0
-  - 0921444c832d
   - 97e06a4c7c75
+  - 708348a17fa1
+  - 0921444c832d
+  - 58c35179ebf0
+  - d6f5fa4ee473
+  - e827f9aae031
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: limma_voom
@@ -435,8 +435,8 @@ tools:
 - name: qualimap_counts
   owner: iuc
   revisions:
-  - 72927fc9e9ed
   - d696cf0a9622
+  - 72927fc9e9ed
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: qualimap_rnaseq
@@ -454,21 +454,21 @@ tools:
 - name: rgrnastar
   owner: iuc
   revisions:
-  - 5ec75f5dae3c
-  - e132e7d02a3e
-  - b9e04854e2bb
+  - 3ea5a2a63fa2
+  - c7c55b694974
+  - 0a563fd2f22e
   - 980d2a2e1180
+  - 7ed2edc1337f
   - 4df95e2d7f61
+  - 5ec75f5dae3c
+  - 4014de1b6daf
+  - e132e7d02a3e
   - c772497b2c32
-  - 79de45b5069b
-  - 0a563fd2f22e
-  - 7ed2edc1337f
+  - 4074fc1940e2
+  - b9e04854e2bb
   - b0f2be869d6d
-  - c7c55b694974
   - 99b17b74a8cd
-  - 3ea5a2a63fa2
-  - 4074fc1940e2
-  - 4014de1b6daf
+  - 79de45b5069b
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rgrnastar
@@ -492,14 +492,14 @@ tools:
 - name: salmon
   owner: bgruening
   revisions:
+  - 53e9709776a0
+  - cc05793bb896
   - f4d5237a84f6
+  - 2c0ca397d302
   - e3d32471da11
-  - ebab418107f5
-  - cc05793bb896
   - 49121db48873
-  - 53e9709776a0
   - 15cd64d7c58b
-  - 2c0ca397d302
+  - ebab418107f5
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salmon
@@ -511,23 +511,23 @@ tools:
 - name: seurat
   owner: iuc
   revisions:
-  - c0fd285eb553
-  - 56242ff81c84
   - 8c28affc7c48
+  - c0fd285eb553
   - fab6ff46e019
+  - 56242ff81c84
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
   owner: iuc
   revisions:
-  - 76d290331481
-  - cbf488da3b2c
-  - ae618321f34a
   - 258d696dbd7e
+  - 1ebd14235b92
   - dd4df992d93d
   - 914cfcba0ec8
-  - 1ebd14235b92
+  - cbf488da3b2c
+  - ae618321f34a
   - cef79931dda5
+  - 76d290331481
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
@@ -563,10 +563,10 @@ tools:
 - name: transdecoder
   owner: iuc
   revisions:
-  - 0db979fead3a
   - d0d4cef4f967
-  - ffd1300599a1
   - c6334cb383ff
+  - ffd1300599a1
+  - 0db979fead3a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transdecoder
@@ -578,10 +578,10 @@ tools:
 - name: trinity_abundance_estimates_to_matrix
   owner: iuc
   revisions:
+  - d6a479fd4281
   - ba3720d7e68b
   - 74217fbfba4d
   - bcc5f03f1900
-  - d6a479fd4281
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_abundance_estimates_to_matrix
@@ -593,10 +593,10 @@ tools:
 - name: trinity_align_and_estimate_abundance
   owner: iuc
   revisions:
-  - 478f36effca1
   - 2fb4ee002432
-  - 56162e446004
   - c2b82a94493e
+  - 478f36effca1
+  - 56162e446004
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_align_and_estimate_abundance
@@ -622,10 +622,10 @@ tools:
 - name: trinity_contig_exn50_statistic
   owner: iuc
   revisions:
+  - 870ac06dff8e
   - be3f26533209
-  - 4687ecf0eb2d
   - 34a018cbee9c
-  - 870ac06dff8e
+  - 4687ecf0eb2d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_contig_exn50_statistic
@@ -637,11 +637,11 @@ tools:
 - name: trinity_define_clusters_by_cutting_tree
   owner: iuc
   revisions:
-  - 65e7dea767ea
-  - c5fbddcac63a
   - 05ab8d5e04a2
-  - 33406f5a445c
   - 5192f657f305
+  - c5fbddcac63a
+  - 65e7dea767ea
+  - 33406f5a445c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_define_clusters_by_cutting_tree
@@ -654,9 +654,9 @@ tools:
   owner: iuc
   revisions:
   - 6f0fb35b799c
-  - a35cba31d904
   - e406ac71165d
   - 1fdb25a8384d
+  - a35cba31d904
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_filter_low_expr_transcripts
@@ -668,10 +668,10 @@ tools:
 - name: trinity_gene_to_trans_map
   owner: iuc
   revisions:
-  - 7c7fbf13aadd
-  - 964b7efe2639
   - c2c039e421af
   - 37a1129c89d2
+  - 964b7efe2639
+  - 7c7fbf13aadd
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_gene_to_trans_map
@@ -698,9 +698,9 @@ tools:
 - name: trinity_samples_qccheck
   owner: iuc
   revisions:
-  - 04bb8bb7c198
   - 9871104ea630
   - 1812dbc5bb7b
+  - 04bb8bb7c198
   - 3a4ac03d1266
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -725,15 +725,15 @@ tools:
 - name: trinity
   owner: iuc
   revisions:
-  - d2bc35f3d1c5
-  - db1f362cca3e
   - cee61b3fcf78
-  - 32b86cd8eb50
+  - d2bc35f3d1c5
   - 8f1c3df4dd49
   - 9fa24d5aac68
-  - d84caa5a98ad
-  - 48636f857c4b
   - c9cfec002f71
+  - db1f362cca3e
+  - 32b86cd8eb50
+  - 48636f857c4b
+  - d84caa5a98ad
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity
@@ -745,10 +745,10 @@ tools:
 - name: trinotate
   owner: iuc
   revisions:
-  - 6fd16fad465d
   - 2b093007fab9
   - 9e61bc67866f
   - 4383070d29ed
+  - 6fd16fad465d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinotate
diff --git a/staging.gvl.org.au/rseqc.yml b/staging.gvl.org.au/rseqc.yml
index e03e93b4c..6715dd810 100644
--- a/staging.gvl.org.au/rseqc.yml
+++ b/staging.gvl.org.au/rseqc.yml
@@ -2,9 +2,9 @@ tools:
 - name: rseqc
   owner: nilesh
   revisions:
-  - 080fd5739bb4
+  - 27e16a30667a
   - 1a052c827e88
+  - 080fd5739bb4
   - 473382134e56
-  - 27e16a30667a
   tool_panel_section_label: RSeQC
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/sambam.yml b/staging.gvl.org.au/sambam.yml
index 0e4911d8f..72af90ea0 100644
--- a/staging.gvl.org.au/sambam.yml
+++ b/staging.gvl.org.au/sambam.yml
@@ -2,9 +2,9 @@ tools:
 - name: bam_to_sam
   owner: devteam
   revisions:
+  - 10184eaa85fc
   - 88eedb4abea0
   - 3c661e57a88f
-  - 10184eaa85fc
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bam_to_sam
@@ -16,10 +16,10 @@ tools:
 - name: bamtools_filter
   owner: devteam
   revisions:
+  - 993b19f20c76
+  - cb20f99fd45b
   - 108db6635177
   - 1dfd95ee241e
-  - cb20f99fd45b
-  - 993b19f20c76
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_filter
@@ -37,15 +37,15 @@ tools:
 - name: bamtools_split_paired
   owner: iuc
   revisions:
-  - 75d5afa09972
   - 5325e44297b9
+  - 75d5afa09972
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_split_tag
   owner: iuc
   revisions:
-  - e30af4e78cd3
   - e9b9c489aacc
+  - e30af4e78cd3
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamutil_diff
@@ -63,8 +63,8 @@ tools:
 - name: pileup_interval
   owner: devteam
   revisions:
-  - ef11139d4545
   - 9c1c0b947e46
+  - ef11139d4545
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pileup_interval
@@ -82,9 +82,9 @@ tools:
 - name: qualimap_bamqc
   owner: iuc
   revisions:
-  - 5f8e69cc4c6e
   - 30a201c9c310
   - e7fd6754d093
+  - 5f8e69cc4c6e
   - 19ece8afbaab
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -97,8 +97,8 @@ tools:
 - name: qualimap_multi_bamqc
   owner: iuc
   revisions:
-  - e38af83df163
   - 17b35d23731f
+  - e38af83df163
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: qualimap_multi_bamqc
@@ -110,8 +110,8 @@ tools:
 - name: sam2interval
   owner: devteam
   revisions:
-  - 75557c0908a9
   - 8c737b8ddc45
+  - 75557c0908a9
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam_bitwise_flag_filter
@@ -123,8 +123,8 @@ tools:
 - name: sam_pileup
   owner: devteam
   revisions:
-  - a3b4ad6858ff
   - 890d97772e2a
+  - a3b4ad6858ff
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam_to_bam
@@ -150,8 +150,8 @@ tools:
   owner: devteam
   revisions:
   - dc6ff68ea5e8
-  - 56c31114ad4a
   - 649a225999a5
+  - 56c31114ad4a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_ampliconclip
@@ -163,10 +163,10 @@ tools:
 - name: samtools_bedcov
   owner: devteam
   revisions:
-  - 12749212f61b
+  - 9149ad20699a
   - 46c6639921f1
   - 6856f8a01905
-  - 9149ad20699a
+  - 12749212f61b
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bedcov
@@ -178,10 +178,10 @@ tools:
 - name: samtools_calmd
   owner: devteam
   revisions:
-  - 33208952b99d
-  - 06dc50b7b711
   - 92ec40abcdcf
+  - 33208952b99d
   - 26b4f9f98aca
+  - 06dc50b7b711
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_calmd
@@ -205,10 +205,10 @@ tools:
 - name: samtools_fastx
   owner: iuc
   revisions:
-  - 720217c23995
-  - 66e23b11feae
   - a8d69aee190e
   - b3d99709fe1a
+  - 720217c23995
+  - 66e23b11feae
   - b906586a6596
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -221,18 +221,18 @@ tools:
 - name: samtools_fixmate
   owner: iuc
   revisions:
-  - d2df79922531
   - e5ece8fa99de
+  - d2df79922531
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_flagstat
   owner: devteam
   revisions:
-  - fe34990e5ce7
+  - db17d5321bad
   - fefd89ab563c
-  - cc61ade70eb8
   - 22970df7a40e
-  - db17d5321bad
+  - fe34990e5ce7
+  - cc61ade70eb8
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_flagstat
@@ -244,11 +244,11 @@ tools:
 - name: samtools_idxstats
   owner: devteam
   revisions:
-  - 88b8c2916784
-  - 7a6034296ae9
-  - fa5d3e61e429
-  - 7def34e6cf4d
   - 811fc2d75ad4
+  - 7def34e6cf4d
+  - fa5d3e61e429
+  - 7a6034296ae9
+  - 88b8c2916784
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_idxstats
@@ -260,28 +260,28 @@ tools:
 - name: samtools_markdup
   owner: iuc
   revisions:
-  - a389f74c3630
   - 40fa6c240105
+  - a389f74c3630
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_merge
   owner: iuc
   revisions:
   - 65a38e8c8e2a
+  - 740ce0a18f0d
   - b40e2d865d52
   - 36677f429310
   - cae2794d2deb
-  - 740ce0a18f0d
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
   owner: devteam
   revisions:
-  - 329deb17a9f7
-  - b61f5d6a7f25
-  - 9da0311ab1dd
   - fa7ad9b89f4a
+  - b61f5d6a7f25
   - 583abf29fc8e
+  - 329deb17a9f7
+  - 9da0311ab1dd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
@@ -293,8 +293,8 @@ tools:
 - name: samtools_phase
   owner: devteam
   revisions:
-  - 1e5880498f52
   - b5c3b1856370
+  - 1e5880498f52
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_phase
@@ -306,10 +306,10 @@ tools:
 - name: samtools_reheader
   owner: devteam
   revisions:
-  - db000c6007a0
-  - bb8cfc6f6e0c
-  - 30388d878f81
   - 85e38b31e8b3
+  - 30388d878f81
+  - bb8cfc6f6e0c
+  - db000c6007a0
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_reheader
@@ -328,8 +328,8 @@ tools:
   owner: devteam
   revisions:
   - a4a10c7924d1
-  - 344fc91e1bfd
   - b8beef827165
+  - 344fc91e1bfd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_slice_bam
@@ -341,10 +341,10 @@ tools:
 - name: samtools_sort
   owner: devteam
   revisions:
-  - cab3f8d35989
   - e613c1ad4c4c
-  - d54a4df48867
+  - cab3f8d35989
   - 6c2c1836728b
+  - d54a4df48867
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_sort
@@ -358,10 +358,10 @@ tools:
   revisions:
   - 5d9ae78f34d3
   - b7f7826ef1cd
-  - 135c85f4cfaf
+  - 818030fa6bbf
   - bcedabb53ddf
   - bd850490c7f1
-  - 818030fa6bbf
+  - 135c85f4cfaf
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_split
@@ -374,11 +374,11 @@ tools:
   owner: devteam
   revisions:
   - 1cc79f49b8d5
-  - 24c5d43cb545
   - 5a08c09b9311
-  - 541082d03bef
   - 3a0efe14891f
   - 145f6d74ff5e
+  - 24c5d43cb545
+  - 541082d03bef
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_stats
@@ -390,16 +390,16 @@ tools:
 - name: samtools_view
   owner: iuc
   revisions:
-  - 32dc5f781059
-  - 2dce91e11ca7
   - 6be888be75f9
-  - 350bbc5c2ffd
-  - 5826298f6a73
   - b01db2684fa5
-  - c370440f901e
   - bf328cec6a42
+  - c370440f901e
+  - 32dc5f781059
   - 0dbf49c414ae
   - b72793637686
+  - 5826298f6a73
+  - 2dce91e11ca7
+  - 350bbc5c2ffd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_view
diff --git a/staging.gvl.org.au/send_data.yml b/staging.gvl.org.au/send_data.yml
index daa30a1ee..79a53a12d 100644
--- a/staging.gvl.org.au/send_data.yml
+++ b/staging.gvl.org.au/send_data.yml
@@ -3,12 +3,12 @@ tools:
   owner: iuc
   revisions:
   - 59bb6d34fca6
-  - 480d9e9d156b
+  - a62c4a11a67d
   - ea5e944f447d
   - 4aab5ae907b6
-  - a62c4a11a67d
+  - d147d6455873
   - 6f6537780379
   - 5cb6146337d8
-  - d147d6455873
+  - 480d9e9d156b
   tool_panel_section_label: Send Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/single_cell.yml b/staging.gvl.org.au/single_cell.yml
index 884226afa..e9504ab8c 100644
--- a/staging.gvl.org.au/single_cell.yml
+++ b/staging.gvl.org.au/single_cell.yml
@@ -9,31 +9,31 @@ tools:
   owner: bgruening
   revisions:
   - f2000bc73102
-  - e4c01dcece8b
-  - c9944a2600f1
   - e32b215b7c04
   - ecb9ea6269ee
+  - c9944a2600f1
+  - e4c01dcece8b
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_export
   owner: iuc
   revisions:
   - e1c3c2f2a834
-  - 707023fa62fe
-  - cfaf5a405371
   - c0b037b12765
+  - cfaf5a405371
+  - 707023fa62fe
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_import
   owner: iuc
   revisions:
-  - fb9e030ffae4
+  - 93dd15e13e6a
+  - 55e35e9203cf
+  - cfc3f5a57dc6
   - 32e547223c9e
   - d330b3082107
-  - 55e35e9203cf
+  - fb9e030ffae4
   - 00712416fdaa
-  - cfc3f5a57dc6
-  - 93dd15e13e6a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_import
@@ -45,13 +45,13 @@ tools:
 - name: anndata_inspect
   owner: iuc
   revisions:
-  - 0bf7fddf90c7
-  - 688357ad5e61
   - 6f0d0c784f09
   - 39e945f0b2c1
   - b9fac48532eb
-  - ee98d611afc6
   - 038e32885fec
+  - 0bf7fddf90c7
+  - ee98d611afc6
+  - 688357ad5e61
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_inspect
@@ -63,13 +63,13 @@ tools:
 - name: anndata_manipulate
   owner: iuc
   revisions:
-  - 9bd945a03d7b
   - b85871dd69f9
-  - ed4996a16f7f
-  - 3d748954434b
-  - 7e8c677a7b71
   - d4af736e7b83
+  - ed4996a16f7f
   - 43cb7b5a6fe7
+  - 7e8c677a7b71
+  - 3d748954434b
+  - 9bd945a03d7b
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_manipulate
@@ -82,44 +82,44 @@ tools:
   owner: ebi-gxa
   revisions:
   - a4774b7b2e85
-  - fe75d2414dc0
   - 2e8022f1923c
+  - fe75d2414dc0
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: baredsc_1d
   owner: iuc
   revisions:
+  - 769d815e4b0d
   - 02b1fe7aed76
-  - 4fff5a293013
   - 0e70b2dfe4be
-  - 769d815e4b0d
+  - 4fff5a293013
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: baredsc_2d
   owner: iuc
   revisions:
-  - c29e7bb492bf
   - aa4a6f0916b4
-  - 344c2af50552
   - a90f8efe08b4
+  - 344c2af50552
+  - c29e7bb492bf
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: baredsc_combine_1d
   owner: iuc
   revisions:
-  - 5b7c81b35b89
   - 050cf43887d3
-  - c32347702e12
+  - 5b7c81b35b89
   - b13d3e4c48e1
+  - c32347702e12
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: baredsc_combine_2d
   owner: iuc
   revisions:
-  - ae969fdb8442
+  - 02fc39c8610d
   - 239193b96d72
+  - ae969fdb8442
   - 1d77986f9ddc
-  - 02fc39c8610d
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cell_intensity_processing
@@ -155,11 +155,11 @@ tools:
 - name: dropletutils
   owner: iuc
   revisions:
-  - cfe1e6c28d95
   - 2c1200fba922
+  - cdf4443d5625
   - 8855361fcfc5
+  - cfe1e6c28d95
   - a9caad671439
-  - cdf4443d5625
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dropletutils
@@ -195,15 +195,15 @@ tools:
 - name: hicexplorer_chicaggregatestatistic
   owner: bgruening
   revisions:
-  - fb7068d30ec9
   - 01c37e54e86e
+  - fb7068d30ec9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicdifferentialtest
   owner: bgruening
   revisions:
-  - 57aeaf6b237d
   - 9d42a6133690
+  - 57aeaf6b237d
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicexportdata
@@ -230,15 +230,15 @@ tools:
 - name: hicexplorer_chicsignificantinteractions
   owner: bgruening
   revisions:
-  - 640e0e45518a
   - 45a386d18509
+  - 640e0e45518a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicviewpointbackgroundmodel
   owner: bgruening
   revisions:
-  - f963c251ac77
   - 9d02f1819e81
+  - f963c251ac77
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicviewpoint
@@ -251,8 +251,8 @@ tools:
 - name: hicexplorer_hicadjustmatrix
   owner: bgruening
   revisions:
-  - e06265d204f6
   - 2dccb6bb0add
+  - e06265d204f6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicaggregatecontacts
@@ -300,36 +300,36 @@ tools:
 - name: hicexplorer_hiccorrelate
   owner: bgruening
   revisions:
-  - 2786a931cad2
   - 2b4d6a8dab36
+  - 2786a931cad2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicdetectloops
   owner: bgruening
   revisions:
-  - 0410b6aada45
   - ffc33339cd3e
+  - 0410b6aada45
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicdifferentialtad
   owner: bgruening
   revisions:
-  - 77d8e0fd162a
   - 5dfba24d7bdd
+  - 77d8e0fd162a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicfindrestrictionsites
   owner: bgruening
   revisions:
-  - 6c5097f6d41e
   - 972dcccb5bbc
+  - 6c5097f6d41e
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hichyperoptdetectloops
   owner: bgruening
   revisions:
-  - 409396ea5cf0
   - 7f7c6ead2d0d
+  - 409396ea5cf0
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicinfo
@@ -342,29 +342,29 @@ tools:
 - name: hicexplorer_hicinterintratad
   owner: bgruening
   revisions:
-  - c261b6b05ee3
   - 55b013e59018
+  - c261b6b05ee3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergedomains
   owner: bgruening
   revisions:
-  - b376ef118807
   - b6b8c8672756
+  - b376ef118807
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergeloops
   owner: bgruening
   revisions:
-  - ed900cd4a0a9
   - 1511a8ebe906
+  - ed900cd4a0a9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicnormalize
   owner: bgruening
   revisions:
-  - 6d042c96aceb
   - f34ab9882252
+  - 6d042c96aceb
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotaverageregions
@@ -377,15 +377,15 @@ tools:
 - name: hicexplorer_hicplotdistvscounts
   owner: bgruening
   revisions:
-  - 6326cd29c1c3
   - 11f39d7f6c64
+  - 6326cd29c1c3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotsvl
   owner: bgruening
   revisions:
-  - 337705015ee8
   - b4e780e93c91
+  - 337705015ee8
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotviewpoint
@@ -398,15 +398,15 @@ tools:
 - name: hicexplorer_hicquickqc
   owner: bgruening
   revisions:
-  - ea8fb5e899e8
   - 21d859ad4502
+  - ea8fb5e899e8
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicsummatrices
   owner: bgruening
   revisions:
-  - 1d6af10874d5
   - 36dfa2825a59
+  - 1d6af10874d5
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hictadclassifier
@@ -438,11 +438,11 @@ tools:
 - name: modify_loom
   owner: iuc
   revisions:
-  - 4b0adaa31c95
-  - 0f1aaff9b22d
   - eeab712b0b99
-  - e98619de2776
+  - 0f1aaff9b22d
   - 7784821452ac
+  - 4b0adaa31c95
+  - e98619de2776
   - 59be31ac9dc3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -455,23 +455,23 @@ tools:
 - name: music_construct_eset
   owner: bgruening
   revisions:
+  - 2cfd0db49bbc
   - 282819d09a4f
   - 7ffaa0968da3
-  - 2cfd0db49bbc
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_deconvolution
   owner: bgruening
   revisions:
-  - 56371b5a2da9
   - 2ba99a52bd44
+  - 56371b5a2da9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_inspect_eset
   owner: bgruening
   revisions:
-  - 7705cc75ac18
   - 8c64a2da3869
+  - 7705cc75ac18
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_manipulate_eset
@@ -489,11 +489,11 @@ tools:
 - name: raceid_clustering
   owner: iuc
   revisions:
+  - 0bff0ee0683a
+  - f911a64454fb
   - a4b734cd253b
   - c4f39bf4a068
   - 7e014059a88d
-  - 0bff0ee0683a
-  - f911a64454fb
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_clustering
@@ -505,10 +505,10 @@ tools:
 - name: raceid_filtnormconf
   owner: iuc
   revisions:
-  - 7608d5faee41
+  - d45f092caf24
   - 43c146e25a43
   - b83fbc90161e
-  - d45f092caf24
+  - 7608d5faee41
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_filtnormconf
@@ -520,9 +520,9 @@ tools:
 - name: raceid_inspectclusters
   owner: iuc
   revisions:
+  - 2b0d3e2f402a
   - f3eb2291da05
   - 37a47c4fd84d
-  - 2b0d3e2f402a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspectclusters
@@ -534,9 +534,9 @@ tools:
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
-  - df8e4e54d367
   - 69018f285aa3
   - a6821f856a1e
+  - df8e4e54d367
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspecttrajectory
@@ -548,10 +548,10 @@ tools:
 - name: raceid_trajectory
   owner: iuc
   revisions:
+  - 72979cac22b2
   - 2af7c5086a96
   - e93b008c637a
   - 44b935f2271b
-  - 72979cac22b2
   - c92d0f9338c5
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -576,16 +576,16 @@ tools:
 - name: scanpy_cluster_reduce_dimension
   owner: iuc
   revisions:
-  - 77b91b9bdf52
-  - edec35114f72
-  - 6f83f8fd381f
-  - f9353ee6a0d4
   - b2df381a6004
   - cb43c5d3acd3
-  - aaa5da8e73a9
+  - 6f83f8fd381f
+  - f9353ee6a0d4
+  - edec35114f72
   - 6acb08931836
+  - 77b91b9bdf52
   - 38db3fef7aad
   - 4d8f983cd751
+  - aaa5da8e73a9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_cluster_reduce_dimension
@@ -598,13 +598,13 @@ tools:
   owner: iuc
   revisions:
   - fc0321c000a3
-  - d636ce5cde16
-  - a03ff8633507
   - 72a6bebab2a5
+  - d636ce5cde16
+  - a97abb8cd15b
   - 3c86f71498bc
+  - a03ff8633507
   - 8cb783c81905
   - 277313130da5
-  - a97abb8cd15b
   - b409c2486353
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -618,16 +618,16 @@ tools:
   owner: iuc
   revisions:
   - f54f0f0598ad
+  - 5e9171dc8244
+  - c5d3684f7c4c
   - 5c3ebe2adc77
   - 4338bf96809e
-  - cc0deb593fc8
-  - 18262103fa61
-  - 6bd82ed14acd
   - 3081ff5c84a3
-  - c5d3684f7c4c
   - 6c145a6868cc
-  - 5e9171dc8244
+  - 6bd82ed14acd
+  - 18262103fa61
   - c0a80a16560f
+  - cc0deb593fc8
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_inspect
@@ -639,16 +639,16 @@ tools:
 - name: scanpy_normalize
   owner: iuc
   revisions:
-  - c9cb76cf8d6c
-  - d844935c906c
+  - 9f354c7c8c92
+  - a407e7f8bdc1
+  - 146ae5d70b47
+  - 7b9fafe32c86
   - ab55fe8030b6
   - 3bcd5445cd7a
+  - c9cb76cf8d6c
   - 94c19fb1281c
-  - 9f354c7c8c92
+  - d844935c906c
   - 56c0d4acef02
-  - 7b9fafe32c86
-  - a407e7f8bdc1
-  - 146ae5d70b47
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_normalize
@@ -660,17 +660,17 @@ tools:
 - name: scanpy_plot
   owner: iuc
   revisions:
-  - aa0c474463c2
-  - 9b0cdb8cf6be
-  - 1072ce66b426
-  - 95777145cb92
+  - 6f5349dd5c49
   - f7446fd8d5e7
+  - 9b0cdb8cf6be
   - dbbe1ea8ecb1
-  - 6f5349dd5c49
+  - aa0c474463c2
+  - 95777145cb92
   - 7647e5cd1b8b
+  - 0185bd174ea0
   - 40812a65a78b
+  - 1072ce66b426
   - 6adf98e782f3
-  - 0185bd174ea0
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot
@@ -682,16 +682,16 @@ tools:
 - name: scanpy_remove_confounders
   owner: iuc
   revisions:
-  - 215733a383f2
+  - bf2017df9837
   - 73ab2ac53d06
+  - 9fb627495ec2
+  - c65fce500915
   - f2f6c703da06
-  - bf2017df9837
-  - fe8f16c594ec
   - d18e7a6e5cd4
-  - 9fb627495ec2
-  - 458e8f43a775
+  - fe8f16c594ec
+  - 215733a383f2
   - a39040ae0a38
-  - c65fce500915
+  - 458e8f43a775
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_remove_confounders
@@ -703,9 +703,9 @@ tools:
 - name: scater_create_qcmetric_ready_sce
   owner: iuc
   revisions:
-  - b834074a9aff
-  - fd808de478b1
   - 8f333f90d8d6
+  - fd808de478b1
+  - b834074a9aff
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_create_qcmetric_ready_sce
@@ -718,8 +718,8 @@ tools:
   owner: iuc
   revisions:
   - 652923ce664f
-  - 7a365ec81b52
   - b7ea9f09c02f
+  - 7a365ec81b52
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_filter
@@ -757,9 +757,9 @@ tools:
 - name: scater_plot_pca
   owner: iuc
   revisions:
-  - c99ba278dfa9
-  - 46fc6751d746
   - 9e5c0bb18d08
+  - 46fc6751d746
+  - c99ba278dfa9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_pca
@@ -988,8 +988,8 @@ tools:
 - name: sinto_fragments
   owner: iuc
   revisions:
-  - 29e6bfb2cf49
   - 03a04f48b922
+  - 29e6bfb2cf49
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: slice_image
@@ -1001,8 +1001,8 @@ tools:
 - name: snapatac2_clustering
   owner: iuc
   revisions:
-  - 8f8bef61fd0b
   - afb90d3485df
+  - 8f8bef61fd0b
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snapatac2_peaks_and_motif
diff --git a/staging.gvl.org.au/statistics.yml b/staging.gvl.org.au/statistics.yml
index 6e9013e3c..33a404d60 100644
--- a/staging.gvl.org.au/statistics.yml
+++ b/staging.gvl.org.au/statistics.yml
@@ -32,11 +32,11 @@ tools:
 - name: datamash_ops
   owner: iuc
   revisions:
-  - 2f3c6f2dcf39
+  - 562f3c677828
+  - 4c07ddedc198
   - 419027d822d6
   - 746e8e4bf929
-  - 4c07ddedc198
-  - 562f3c677828
+  - 2f3c6f2dcf39
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_ava_perclass
@@ -49,8 +49,8 @@ tools:
 - name: dwt_cor_avb_all
   owner: devteam
   revisions:
-  - 8564f6927b87
   - e01e8a9a82f4
+  - 8564f6927b87
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_ivc_all
@@ -70,9 +70,9 @@ tools:
 - name: dwt_var_perfeature
   owner: devteam
   revisions:
-  - cb1c59d69557
-  - 6c29c7e347e8
   - 7a15159140d1
+  - 6c29c7e347e8
+  - cb1c59d69557
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: generate_pc_lda_matrix
@@ -120,43 +120,43 @@ tools:
 - name: sklearn_build_pipeline
   owner: bgruening
   revisions:
-  - 4c4ec859c31a
+  - b1eda492f063
+  - 7442b94d6a1e
   - 9c3e1d3235c8
+  - 4c4ec859c31a
   - 840f29aad145
   - aef56d0e7a61
-  - 7442b94d6a1e
-  - b1eda492f063
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_estimator_attributes
   owner: bgruening
   revisions:
   - 07843f917990
-  - 9fda0b82f419
-  - 30d21a6041f6
   - d0352e8b4c10
   - 375bbd555f4a
+  - 9fda0b82f419
+  - 30d21a6041f6
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_nn_classifier
   owner: bgruening
   revisions:
+  - 7ae443e6217d
   - 2c58b83c9bad
-  - 4cc980df6265
   - cd02bf168d23
-  - 7ae443e6217d
   - 8b1b2b91f8d0
+  - 4cc980df6265
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
-  - e10e776f2109
   - 7dd3fb35904f
-  - ad7e0b4291ee
-  - 1dd433d2c92c
   - bb9fc9d46ea4
+  - e10e776f2109
+  - 1dd433d2c92c
   - 4bbaf77573ef
+  - ad7e0b4291ee
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: t_test_two_samples
diff --git a/staging.gvl.org.au/text_manipulation.yml b/staging.gvl.org.au/text_manipulation.yml
index a2dc76467..80e2a0e0c 100644
--- a/staging.gvl.org.au/text_manipulation.yml
+++ b/staging.gvl.org.au/text_manipulation.yml
@@ -27,22 +27,22 @@ tools:
 - name: column_arrange_by_header
   owner: bgruening
   revisions:
-  - 6c6d26ff01ff
   - f18f67056946
+  - 6c6d26ff01ff
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_maker
   owner: devteam
   revisions:
-  - 6e8d94597139
-  - 464b9305180e
-  - 626658afe4cb
-  - aff5135563c6
-  - 02026300aa45
   - 9cd341095afd
-  - 13b6f0007d9e
   - 6595517c2dd8
+  - 464b9305180e
+  - 02026300aa45
+  - 626658afe4cb
   - be25c075ed54
+  - 6e8d94597139
+  - 13b6f0007d9e
+  - aff5135563c6
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_remove_by_header
@@ -54,8 +54,8 @@ tools:
 - name: concatenate_multiple_datasets
   owner: artbio
   revisions:
-  - 3a4694d4354f
   - 6f54dc6b37da
+  - 3a4694d4354f
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: concatenate_multiple_datasets
@@ -79,11 +79,11 @@ tools:
 - name: filter_tabular
   owner: iuc
   revisions:
-  - 557ec8d7087d
   - 9cc411a62277
-  - 90f657745fea
-  - 34d29339abab
   - 37cde8134c6a
+  - 557ec8d7087d
+  - 34d29339abab
+  - 90f657745fea
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gff3_rebase
@@ -107,30 +107,30 @@ tools:
 - name: merge_cols
   owner: devteam
   revisions:
-  - ae7843d06f8f
   - dd40b1e9eebe
+  - ae7843d06f8f
   - f2aac0c5c60d
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: query_tabular
   owner: iuc
   revisions:
-  - cf34c344508d
+  - 1ea4e668bf73
   - 83069b38aa85
-  - 623f3eb7aa48
-  - 33d61c89fb8d
-  - 2e8f945f7285
   - 3a6b78c39dca
-  - 1ea4e668bf73
+  - cf34c344508d
   - cf4397560712
+  - 2e8f945f7285
+  - 33d61c89fb8d
+  - 623f3eb7aa48
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: regex_find_replace
   owner: galaxyp
   revisions:
-  - 399da6b5ec21
-  - 503bcd6ebe4b
   - ae8c4b2488e7
+  - 503bcd6ebe4b
+  - 399da6b5ec21
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: replace_column_by_key_value_file
@@ -142,10 +142,10 @@ tools:
 - name: sqlite_to_tabular
   owner: iuc
   revisions:
-  - c4d18aa4ec4a
-  - f768f6183386
   - bce29ec10b78
+  - f768f6183386
   - b722161a845a
+  - c4d18aa4ec4a
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: table_compute
@@ -158,15 +158,15 @@ tools:
 - name: text_processing
   owner: bgruening
   revisions:
-  - fbf99087e067
-  - 0a8c6b61f0f4
   - 12615d397df7
-  - 74a8bef53a00
   - d698c222f354
-  - f46f0e4f75c4
   - 86755160afbf
+  - 0a8c6b61f0f4
   - a6f147a050a2
-  - 9ff72e942410
+  - fbf99087e067
   - ddf54b12c295
+  - 74a8bef53a00
+  - f46f0e4f75c4
+  - 9ff72e942410
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/variant_calling.yml b/staging.gvl.org.au/variant_calling.yml
index 0a8215d96..76026321b 100644
--- a/staging.gvl.org.au/variant_calling.yml
+++ b/staging.gvl.org.au/variant_calling.yml
@@ -15,8 +15,8 @@ tools:
   owner: iuc
   revisions:
   - 0d18a3ba2d1c
-  - 82fb5e3bb93e
   - 85c57cc9b558
+  - 82fb5e3bb93e
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: control_freec
@@ -28,48 +28,48 @@ tools:
 - name: cutesv
   owner: iuc
   revisions:
-  - c0f8fe52948e
   - 23d7e75d850e
+  - c0f8fe52948e
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: freebayes
   owner: devteam
   revisions:
-  - 156b60c1530f
+  - 04fa42777df9
   - ef2c525bd8cd
   - a5937157062f
-  - 04fa42777df9
   - 57def2d7c093
+  - 156b60c1530f
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_alnqual
   owner: iuc
   revisions:
-  - 435b157bed6d
+  - 09d6e4693887
   - 791f73caa0c8
+  - 435b157bed6d
   - e61c9ac190ad
-  - 09d6e4693887
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_call
   owner: iuc
   revisions:
   - 65432c3abf6c
-  - 4805fe3d8fda
-  - dfadc322b065
-  - 3b4b2121842f
   - b11e8e9c23bf
+  - 03627f24605f
   - e1461b5c52a0
   - 074d44697036
-  - 03627f24605f
+  - 4805fe3d8fda
+  - 3b4b2121842f
+  - dfadc322b065
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_filter
   owner: iuc
   revisions:
+  - 701d134358ad
   - 7dfca164d2e3
   - 9cb929f21cfa
-  - 701d134358ad
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_indelqual
@@ -85,8 +85,8 @@ tools:
   owner: iuc
   revisions:
   - aa35ee7f3ab2
-  - dbd9f2db9ed8
   - cdaab621d454
+  - dbd9f2db9ed8
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: naive_variant_caller
@@ -98,17 +98,17 @@ tools:
 - name: sniffles
   owner: iuc
   revisions:
-  - 43fffeed243f
   - 93c4b04a0769
+  - 43fffeed243f
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snippy
   owner: iuc
   revisions:
   - 5bbf9eada9c2
-  - 9bccc8404a3c
   - d220115f882b
   - c9a8ef2aa380
+  - 9bccc8404a3c
   - fa016f1eea1a
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -151,20 +151,20 @@ tools:
 - name: tb_variant_filter
   owner: iuc
   revisions:
-  - 40f0591deda0
-  - e7aff4a85df5
   - 3b1e7c170b10
-  - 32f14a2723ec
+  - 40f0591deda0
   - ee4a90760848
+  - 32f14a2723ec
+  - e7aff4a85df5
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbvcfreport
   owner: iuc
   revisions:
-  - 42818629ec4c
   - adc0645b945c
-  - 9793bc5d741b
+  - 42818629ec4c
   - 4934c0ac6197
+  - 9793bc5d741b
   - 02d81b994ef5
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/vcfbcf.yml b/staging.gvl.org.au/vcfbcf.yml
index a75d76047..a881813e1 100644
--- a/staging.gvl.org.au/vcfbcf.yml
+++ b/staging.gvl.org.au/vcfbcf.yml
@@ -2,14 +2,14 @@ tools:
 - name: bcftools_annotate
   owner: iuc
   revisions:
-  - 6a88248893c4
-  - 8a2e296c07ef
-  - 2c372041ed8c
-  - ebe5fc018e72
+  - 95815a0bb307
   - e075b1be5abb
-  - b7ea370b8f5d
+  - ebe5fc018e72
+  - 2c372041ed8c
   - 265fe0f9ea64
-  - 95815a0bb307
+  - 6a88248893c4
+  - b7ea370b8f5d
+  - 8a2e296c07ef
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_annotate
@@ -21,13 +21,13 @@ tools:
 - name: bcftools_call
   owner: iuc
   revisions:
-  - 0fba2c15b40d
-  - 22637b1a55bf
   - b03984136ce4
   - 544cb432072b
-  - 21687e35f066
-  - 1001172b5089
+  - 0fba2c15b40d
   - c37b684e7f4e
+  - 22637b1a55bf
+  - 1001172b5089
+  - 21687e35f066
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_call
@@ -39,15 +39,15 @@ tools:
 - name: bcftools_cnv
   owner: iuc
   revisions:
-  - 8ca3647c90fd
-  - 8627b2b383b4
   - 01d6b7d6365e
-  - bf1f4994f104
-  - ccb83bf54de0
+  - 8ca3647c90fd
   - 8408bffd5616
-  - 0238f68ad641
   - 143796b504eb
+  - bf1f4994f104
+  - 0238f68ad641
+  - 8627b2b383b4
   - 3a7084316a6e
+  - ccb83bf54de0
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_cnv
@@ -59,13 +59,13 @@ tools:
 - name: bcftools_concat
   owner: iuc
   revisions:
-  - 6b6c992d3a14
+  - d144af39073a
+  - abd489215f73
   - 81426b3cf18b
+  - f430a1ec7ee4
+  - 6b6c992d3a14
   - 9b5abbf50d23
-  - abd489215f73
   - 62ca6da715bf
-  - f430a1ec7ee4
-  - d144af39073a
   - 03e0645395d2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -78,14 +78,14 @@ tools:
 - name: bcftools_consensus
   owner: iuc
   revisions:
-  - e522022137f6
-  - 1171446da5db
-  - 8aa352093d73
   - 1829900b5dcd
-  - d3081540d175
+  - 8aa352093d73
+  - 95c6f3f4c77f
   - d37e313a41be
+  - 1171446da5db
+  - d3081540d175
+  - e522022137f6
   - 2363ef414c9b
-  - 95c6f3f4c77f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_consensus
@@ -97,14 +97,14 @@ tools:
 - name: bcftools_convert_from_vcf
   owner: iuc
   revisions:
-  - b14ff40958cb
-  - 09f37afb3621
-  - d58d2e8c7a57
   - 012656fd329f
-  - 9b29129fb491
   - 92c0aff8b53e
+  - b14ff40958cb
   - 1137ce8efc1e
+  - 9b29129fb491
+  - 09f37afb3621
   - 348cd212dbad
+  - d58d2e8c7a57
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_from_vcf
@@ -117,12 +117,12 @@ tools:
   owner: iuc
   revisions:
   - de68c11034f6
-  - cfd81f17580b
-  - ecc9192912b8
-  - 55c0e906c14c
-  - 7291189e98b4
   - 367ba501b6eb
+  - ecc9192912b8
+  - cfd81f17580b
   - 1f2183a23823
+  - 7291189e98b4
+  - 55c0e906c14c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_to_vcf
@@ -134,13 +134,13 @@ tools:
 - name: bcftools_csq
   owner: iuc
   revisions:
-  - ae68ceb4cca3
   - 6c790a091c7c
+  - e6f4badbe6f3
   - 64a8f7dae3ad
+  - 7cbf3c66d4ad
+  - ae68ceb4cca3
   - d237eaef451f
   - 039ea3f1dea9
-  - 7cbf3c66d4ad
-  - e6f4badbe6f3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_csq
@@ -152,14 +152,14 @@ tools:
 - name: bcftools_filter
   owner: iuc
   revisions:
-  - cdb7b4927742
   - e7452697afd9
-  - 33bd9301568c
   - 963a3635b2e1
-  - 46fcafba49ec
   - 6ea7170a016d
-  - 277719af4dd7
+  - 33bd9301568c
   - 5d6653c989cb
+  - 46fcafba49ec
+  - cdb7b4927742
+  - 277719af4dd7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_filter
@@ -171,14 +171,14 @@ tools:
 - name: bcftools_gtcheck
   owner: iuc
   revisions:
-  - 501bfb078342
-  - a1213a0b7b66
-  - 7b4454382d39
-  - b7f0f59baa7e
   - 91c1e57d5c7f
-  - a29a2f40b665
   - 26d97cdd5410
+  - b7f0f59baa7e
+  - a29a2f40b665
+  - a1213a0b7b66
+  - 7b4454382d39
   - 5a321fab1fe4
+  - 501bfb078342
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_gtcheck
@@ -190,15 +190,15 @@ tools:
 - name: bcftools_isec
   owner: iuc
   revisions:
-  - 39bca000353d
-  - c803c34361e0
-  - 5f27e814a119
   - 97d19c008d15
-  - 81e4014fa809
+  - 39bca000353d
   - 15da1ddcfeff
-  - d7d1663559e9
+  - 81e4014fa809
   - 768d04526638
+  - c803c34361e0
   - 709dd8291b83
+  - 5f27e814a119
+  - d7d1663559e9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_isec
@@ -210,14 +210,14 @@ tools:
 - name: bcftools_merge
   owner: iuc
   revisions:
-  - 86296490704e
-  - 2215287d5cc9
   - 5b006286a458
-  - b1eba148b35b
-  - b84fda8ebef0
+  - 85ee7e6c4204
+  - 2215287d5cc9
   - 7ba36babba2d
+  - 86296490704e
+  - b84fda8ebef0
   - b931e65638b8
-  - 85ee7e6c4204
+  - b1eba148b35b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_merge
@@ -230,15 +230,15 @@ tools:
   owner: iuc
   revisions:
   - 0a5dcc9a8ec2
+  - 9c711df3258d
+  - ce9396ddcb2b
   - cf06b44624c7
   - 4e1d23e5c691
-  - 9c711df3258d
-  - 56556e1267de
   - 31ea13dfe5e6
-  - 5660b21a0dbd
+  - 56556e1267de
   - 37757ffb4c5f
   - f506df85c652
-  - ce9396ddcb2b
+  - 5660b21a0dbd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_mpileup
@@ -250,13 +250,13 @@ tools:
 - name: bcftools_norm
   owner: iuc
   revisions:
-  - 6deb4d549bc9
-  - 021693fdadaa
-  - 19905c025d2a
-  - 48291658fdf6
+  - 271965b55437
   - 1ca7418e46ee
   - a404f786a94c
-  - 271965b55437
+  - 19905c025d2a
+  - 48291658fdf6
+  - 021693fdadaa
+  - 6deb4d549bc9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_norm
@@ -268,13 +268,13 @@ tools:
 - name: bcftools_plugin_counts
   owner: iuc
   revisions:
-  - 97e8145d7e30
-  - c450406f722b
-  - 71c78e0eea52
+  - 3f6fadf8b8ff
   - f7879f1e77f9
   - dadbd61dc4cf
-  - 3f6fadf8b8ff
+  - 97e8145d7e30
   - 5ad5d4243987
+  - 71c78e0eea52
+  - c450406f722b
   - 69d8b7567281
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -287,14 +287,14 @@ tools:
 - name: bcftools_plugin_dosage
   owner: iuc
   revisions:
+  - 52f9e4a660e3
   - d31a2e310a52
-  - 283911fe7e1a
-  - 2514e684f8a3
-  - cc7f9a4e186b
-  - 79f7a1acc2cd
   - 6cf13a657cf6
+  - 2514e684f8a3
   - 0fe007201caf
-  - 52f9e4a660e3
+  - 79f7a1acc2cd
+  - cc7f9a4e186b
+  - 283911fe7e1a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_dosage
@@ -306,14 +306,14 @@ tools:
 - name: bcftools_plugin_fill_an_ac
   owner: iuc
   revisions:
-  - 80e6e399ccd0
+  - 75ddd081f608
   - a12844ca467a
+  - 0a62420cb9cd
+  - 80e6e399ccd0
+  - 026a989b7cee
+  - 1411bef27a75
   - 6963a6841d22
   - 230e424bde67
-  - 1411bef27a75
-  - 026a989b7cee
-  - 75ddd081f608
-  - 0a62420cb9cd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_an_ac
@@ -325,14 +325,14 @@ tools:
 - name: bcftools_plugin_fill_tags
   owner: iuc
   revisions:
-  - bca7ce81688f
-  - 450a265f92e8
   - 5808f77b2bb6
-  - e493702b19eb
-  - 444e6a756c35
   - 5acfca5a76af
-  - ba20340426fe
+  - 450a265f92e8
   - b10d1510fa84
+  - 444e6a756c35
+  - e493702b19eb
+  - bca7ce81688f
+  - ba20340426fe
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_tags
@@ -344,13 +344,13 @@ tools:
 - name: bcftools_plugin_fixploidy
   owner: iuc
   revisions:
-  - dd72ff87cfd0
   - c43399f161f4
   - 12152af85697
+  - dd72ff87cfd0
   - 4d236c696844
-  - d52b8947b269
-  - f2482aa4862e
   - 157ffcdd3fa7
+  - f2482aa4862e
+  - d52b8947b269
   - 68fec03a63b7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -364,11 +364,11 @@ tools:
   owner: iuc
   revisions:
   - cbe39e530cbf
-  - 75becf493cd3
-  - 0e5d11004815
   - 8dbce095986c
   - 29ba253e2e05
+  - 0e5d11004815
   - 8f2fc0ab30fb
+  - 75becf493cd3
   - 6f8e223f78f3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -381,14 +381,14 @@ tools:
 - name: bcftools_plugin_mendelian
   owner: iuc
   revisions:
-  - f544f71adb73
   - 8f5962c43868
   - 3ff5654b4e7d
-  - a367a15c6de5
-  - 9708e3086f32
   - e0a856def0b0
   - a8630d4fbaf8
+  - f544f71adb73
+  - a367a15c6de5
   - 88bb477f45f7
+  - 9708e3086f32
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_mendelian
@@ -400,14 +400,14 @@ tools:
 - name: bcftools_plugin_missing2ref
   owner: iuc
   revisions:
-  - 96d0145c041a
-  - 03e30f06f15f
   - 8b260d252ff4
-  - 5c9729d54721
+  - 96d0145c041a
   - 31c096c6b156
-  - 34dc0bbc7e93
   - 6ce175385dd9
+  - 34dc0bbc7e93
   - 4ed46189d6c6
+  - 03e30f06f15f
+  - 5c9729d54721
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_missing2ref
@@ -419,14 +419,14 @@ tools:
 - name: bcftools_plugin_setgt
   owner: iuc
   revisions:
+  - 681bdf1e22ff
   - a1aad8b559c6
-  - 40daf124be88
-  - 11af7fce71cf
   - 09f5e45a8212
+  - 40daf124be88
   - 46eb13bc2c73
-  - a730269af659
   - 2c4941386820
-  - 681bdf1e22ff
+  - a730269af659
+  - 11af7fce71cf
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_setgt
@@ -438,14 +438,14 @@ tools:
 - name: bcftools_plugin_tag2tag
   owner: iuc
   revisions:
-  - 8cb121b6a1d2
-  - 6cbb9c47795c
+  - 3897eaadfbff
   - 12038f59c0f4
-  - b74b8cbfc1f1
+  - 0594ea1417c8
+  - 8cb121b6a1d2
   - f272b8ba0983
+  - 6cbb9c47795c
   - 743cd1472aeb
-  - 3897eaadfbff
-  - 0594ea1417c8
+  - b74b8cbfc1f1
   - 882b2e649602
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -458,13 +458,13 @@ tools:
 - name: bcftools_query_list_samples
   owner: iuc
   revisions:
-  - a9826db86d9a
-  - 238f78e38a8b
-  - eccb508bb678
-  - cced6715f926
   - dba06328556a
-  - adee7e8b746f
   - 18cf9de1cf73
+  - 238f78e38a8b
+  - a9826db86d9a
+  - adee7e8b746f
+  - cced6715f926
+  - eccb508bb678
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query_list_samples
@@ -476,13 +476,13 @@ tools:
 - name: bcftools_query
   owner: iuc
   revisions:
-  - e53501abf992
-  - e0ad88dec40d
+  - 9f36041495a3
   - 3ce32adc55b2
+  - e53501abf992
+  - c9935c9e8a24
   - f64e7ca2efd2
+  - e0ad88dec40d
   - 31a1b89eab9b
-  - c9935c9e8a24
-  - 9f36041495a3
   - fdec14f69010
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -495,14 +495,14 @@ tools:
 - name: bcftools_reheader
   owner: iuc
   revisions:
-  - 4db0695a6fc7
   - d68c43202172
   - fd3539749127
-  - 3b7b1fe7b937
   - 2331ddcbd5aa
-  - 79489d5685dd
   - b7be725976b6
+  - 3b7b1fe7b937
   - d43eb39b989e
+  - 4db0695a6fc7
+  - 79489d5685dd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_reheader
@@ -514,13 +514,13 @@ tools:
 - name: bcftools_roh
   owner: iuc
   revisions:
-  - 1a989b4110da
-  - 6a636d58dfc2
-  - 1ccf0e7fb4f6
+  - b0d39ef600a7
   - 78cd8b69da4c
+  - 1a989b4110da
   - 58091e1be01b
+  - 6a636d58dfc2
   - 5296d26b0373
-  - b0d39ef600a7
+  - 1ccf0e7fb4f6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_roh
@@ -532,14 +532,14 @@ tools:
 - name: bcftools_stats
   owner: iuc
   revisions:
-  - 4d3ce9dc1525
   - b17394940c7a
+  - 4d3ce9dc1525
   - 591cc8518033
-  - e8af591435d1
-  - bf8325a07ce7
   - baa8823f8073
-  - b641062a2587
+  - bf8325a07ce7
   - '388983871932'
+  - b641062a2587
+  - e8af591435d1
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_stats
@@ -551,14 +551,14 @@ tools:
 - name: bcftools_view
   owner: iuc
   revisions:
+  - c2ab91a0d506
   - 1a2ef636f48e
-  - 3ca3de4e5291
-  - 38d75661c235
+  - 3a233c8eb814
   - 59fa8742285e
-  - e6b5cbbf449b
-  - c2ab91a0d506
   - d1f8f55f564d
-  - 3a233c8eb814
+  - 38d75661c235
+  - e6b5cbbf449b
+  - 3ca3de4e5291
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_view
@@ -570,8 +570,8 @@ tools:
 - name: vcf2tsv
   owner: devteam
   revisions:
-  - e92b3c0f9224
   - 285060661b45
+  - e92b3c0f9224
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfaddinfo
@@ -584,22 +584,22 @@ tools:
 - name: vcfallelicprimitives
   owner: devteam
   revisions:
-  - 57a16b310fe8
   - a8a4f94aa321
+  - 57a16b310fe8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotate
   owner: devteam
   revisions:
-  - 01e0321aca98
   - 6faa2c4c71d2
+  - 01e0321aca98
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotategenotypes
   owner: devteam
   revisions:
-  - 70bc6ced57f7
   - 84959112d9a6
+  - 70bc6ced57f7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbedintersect
@@ -619,51 +619,52 @@ tools:
 - name: vcfcheck
   owner: devteam
   revisions:
-  - aa8e8c96ca06
   - 5e850c85ba32
+  - aa8e8c96ca06
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcombine
   owner: devteam
   revisions:
-  - 1f0ba67cc85a
   - 53edb91ed051
+  - 1f0ba67cc85a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcommonsamples
   owner: devteam
   revisions:
-  - f1852ecef841
   - 254f285dbaaa
+  - f1852ecef841
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfdistance
   owner: devteam
   revisions:
-  - 48e458c721b3
   - 5822b40f3037
+  - 48e458c721b3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffilter
   owner: devteam
   revisions:
   - 4bdc111b2470
-  - 6b935ab36d7b
   - eae7c08ebb6f
+  - 6b935ab36d7b
+  - fa24bf0598f4
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffixup
   owner: devteam
   revisions:
-  - fc5a64fdd5b2
   - 11f62f071125
+  - fc5a64fdd5b2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfflatten
   owner: devteam
   revisions:
-  - b24e368ae7b1
   - f285aa6bdcfb
+  - b24e368ae7b1
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfgeno2haplo
@@ -676,8 +677,8 @@ tools:
 - name: vcfgenotypes
   owner: devteam
   revisions:
-  - a60ae8af21a1
   - f5653ed90dfd
+  - a60ae8af21a1
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfhethom
@@ -690,8 +691,8 @@ tools:
 - name: vcfleftalign
   owner: devteam
   revisions:
-  - 29f9b782727e
   - d2406f98a782
+  - 29f9b782727e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfprimers
@@ -711,15 +712,16 @@ tools:
 - name: vcfselectsamples
   owner: devteam
   revisions:
-  - 958b6484a7f1
   - 2ba3b87f904f
+  - 958b6484a7f1
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfsort
   owner: devteam
   revisions:
-  - 5b7120c66efc
+  - f0580efedada
   - ee60203e68d9
+  - 5b7120c66efc
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcftools_annotate
@@ -749,7 +751,7 @@ tools:
 - name: vcfvcfintersect
   owner: devteam
   revisions:
-  - 166c4f50525f
   - 6f6bf10618d7
+  - 166c4f50525f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/annotation.yml b/usegalaxy.org.au/annotation.yml
index 6a6147f10..aaa646be1 100644
--- a/usegalaxy.org.au/annotation.yml
+++ b/usegalaxy.org.au/annotation.yml
@@ -2,32 +2,32 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - c2ef298da409
+  - 3f3e247c053d
+  - 78c75f134c16
   - 4efdca267d51
   - 6e9aea89e388
-  - 78c75f134c16
-  - 3f3e247c053d
+  - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 1dd7adc21b6d
   - 8dc7512c9dc9
+  - 1dd7adc21b6d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
   owner: iuc
   revisions:
-  - 1fdc517743e6
   - c4ac24510b55
+  - 1fdc517743e6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_parseval
@@ -40,58 +40,58 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 1aae04680c4b
-  - f29602ae449e
-  - 44018dd6b447
   - b5d8e5475247
+  - 4f2967b27e67
   - a79ee60b6926
-  - 3e1f6f6d557e
+  - f29602ae449e
   - 133f36c29579
-  - 4f2967b27e67
-  - cd2480f35935
+  - 1aae04680c4b
+  - 44018dd6b447
+  - 3e1f6f6d557e
   - fe3ca740a485
+  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - bc88856eddab
   - e78e25d3b4bd
+  - bc88856eddab
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 6519ebe25019
   - 7be22100e5e1
-  - f1e653756174
   - dc027fa56d55
+  - f1e653756174
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - bd0e53f3a891
   - 09855551d713
   - ca6d970d931c
+  - bd0e53f3a891
   - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - 728dacaf08a9
   - 92eee5f31117
-  - d77802fe76f7
+  - 728dacaf08a9
   - da5f1924bb2e
+  - d77802fe76f7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
-  - 8fd427007e93
   - 7355bbf5e05f
+  - 8fd427007e93
+  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -103,8 +103,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -116,16 +116,16 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
-  - 7ccc6234b54e
   - 8e9e228c54c4
+  - 7ccc6234b54e
   - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
   - 9d1fbff733cf
+  - d9c3016f7283
   - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -151,60 +151,60 @@ tools:
   owner: iuc
   revisions:
   - 582fd74dc2a1
-  - 9f2455341fac
   - 3bbe70fef6df
-  - 756376aeb1ae
-  - b6b5cd37f2a2
   - 14f588312c56
+  - b6b5cd37f2a2
+  - 9f2455341fac
+  - 756376aeb1ae
   - 9c15ca7e764e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 1691af4a0d17
   - a230ea445788
-  - 8e1ace8f77c6
+  - 1691af4a0d17
   - 989f7c061f35
-  - 30fb23d4c31c
+  - 8e1ace8f77c6
   - 73428a792541
   - 0ffe5be70caf
+  - 30fb23d4c31c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 494f0bb4a993
   - 0418d28136de
-  - 57c6718cbfcc
+  - 5a5ae61da69c
+  - 494f0bb4a993
   - 30f08d74024f
-  - e94187d661df
   - 563a19373357
-  - 5a5ae61da69c
+  - 57c6718cbfcc
+  - e94187d661df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
+  - 2bba2ff070d9
+  - f77d7b685bb3
+  - 1bc5a03faf2e
+  - d6c7106b7b2e
   - 4b96ced19f75
   - f31125bb85ea
   - 7abc5f6dd595
-  - f77d7b685bb3
-  - d6c7106b7b2e
-  - 2bba2ff070d9
-  - 1bc5a03faf2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 520e30695ec3
   - fed64e676186
   - 52af33194019
   - 54961e026fe4
-  - d3af38b9c7e1
   - d77fdcca400e
   - b3cf4684e9c7
+  - 520e30695ec3
+  - d3af38b9c7e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -216,9 +216,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 79261884facd
-  - 2aea122fbd25
   - 07d7991bf205
+  - 2aea122fbd25
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -230,10 +230,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
+  - 8b3e3657034e
+  - ef2ad746b589
   - 602de62d995b
   - 43798b4caee0
-  - ef2ad746b589
-  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -257,16 +257,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - 98cafcbd2578
-  - c55643c3d813
   - 74810db257cc
+  - c55643c3d813
+  - 98cafcbd2578
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -291,18 +291,18 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - 370c210d9541
   - d46d803ca6cc
+  - 370c210d9541
   - 3c1a01127868
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
-  - 033755194fe9
   - c8ac28e8ac44
   - e95d52d295d7
+  - 624606f7c996
+  - 033755194fe9
   - b815ec682418
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -351,8 +351,8 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - d643e3b03500
   - a17498c603ec
+  - d643e3b03500
   - 8a22554cdde2
   - bf68eb663bc3
   tool_panel_section_label: Annotation
@@ -398,22 +398,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 5c7b70713fb5
-  - 68693743661e
-  - cfcf33df7fc0
-  - 8f92c2b26e6d
   - 5b80f544c67f
   - 268d162b9c49
-  - 6322be79bd8e
+  - cfcf33df7fc0
+  - 68693743661e
+  - 5c7b70713fb5
+  - 8f92c2b26e6d
   - 5a29ab10dba6
+  - 6322be79bd8e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
-  - 5fab4f81391d
   - 2b3e65a4252f
+  - 5fab4f81391d
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sortmerna
@@ -432,24 +432,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 4839e590cb26
-  - 37213cf56392
-  - 809dfc93d593
+  - 51dd22484644
   - 200c378d85f3
+  - 809dfc93d593
+  - 45083d070fb8
+  - 4839e590cb26
   - d03af1c7002c
-  - 037a11682176
   - ba6f87115e13
   - ac8250086ac3
+  - 37213cf56392
+  - 037a11682176
   - e1a9d6fd258d
-  - 51dd22484644
-  - 45083d070fb8
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm
diff --git a/usegalaxy.org.au/assembly.yml b/usegalaxy.org.au/assembly.yml
index ad3565015..956d9ea29 100644
--- a/usegalaxy.org.au/assembly.yml
+++ b/usegalaxy.org.au/assembly.yml
@@ -2,27 +2,27 @@ tools:
 - name: abyss
   owner: iuc
   revisions:
-  - 0124fce4654a
-  - 841084c5fc46
+  - 8f1b150a2487
+  - fa5259cc561b
+  - d6d5ccc2c581
   - 890b794c997d
-  - 553bfe8bd0b5
-  - 7547fcab5d19
   - a929ce596a34
-  - d6d5ccc2c581
-  - fa5259cc561b
-  - 8f1b150a2487
   - 0e93176640ac
+  - 7547fcab5d19
+  - 0124fce4654a
+  - 553bfe8bd0b5
+  - 841084c5fc46
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bandage
   owner: iuc
   revisions:
-  - b2860df42e16
   - 067592b6b312
-  - b9e31c5c01c7
-  - ddddce450736
   - 21e491ad532a
   - 94fe43e75ddc
+  - b2860df42e16
+  - ddddce450736
+  - b9e31c5c01c7
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bellerophon
@@ -35,46 +35,46 @@ tools:
 - name: bionano_scaffold
   owner: bgruening
   revisions:
+  - 3371c5bdc17a
   - faee8629b460
-  - 5258e18bbe23
   - a7f16f24e9a1
-  - 3371c5bdc17a
   - 22286dab5aa1
+  - 5258e18bbe23
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blobtoolkit
   owner: bgruening
   revisions:
-  - 8c2167481e72
   - 53dd00a4ab68
+  - 8c2167481e72
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: busco
   owner: iuc
   revisions:
-  - e4bd1e99bacf
+  - 46ae58b1d792
   - 41030a6c03b7
+  - 94170eee0ad8
+  - 602fb8e63aa7
+  - bb935709506a
   - 5ecdeca79a0d
-  - e824f5d958d0
-  - 46ae58b1d792
-  - ea8146ee148f
-  - 0d243f458b53
-  - 2babe6d5c561
   - 4048d82f0c88
-  - bb935709506a
-  - 1e62c28ba91d
-  - 602fb8e63aa7
-  - 94170eee0ad8
-  - cf13a1e03e5b
   - 1440ae06552f
+  - 1e62c28ba91d
+  - 0d243f458b53
   - 2dd755c1c6ff
+  - e4bd1e99bacf
+  - 2babe6d5c561
+  - cf13a1e03e5b
+  - e824f5d958d0
+  - ea8146ee148f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: canu
   owner: bgruening
   revisions:
-  - 86f150c8019d
   - 5732f959936a
+  - 86f150c8019d
   - c5b7390290b1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -87,42 +87,43 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
-  - 1f0769f0b56b
-  - 8d4f03b5fe9d
-  - 3ee0ef312022
-  - 291923e6f276
   - 3e4f8642c77e
+  - 8d4f03b5fe9d
   - 1ce9b1d72ec3
+  - 3ee0ef312022
   - 276f5d8712d5
   - cb8dfd28c16f
+  - 291923e6f276
   - e27815e82dd4
+  - 1f0769f0b56b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genomescope
   owner: iuc
   revisions:
-  - 3169a38c2656
-  - 01210c4e9144
   - 460fad600dce
   - b2f674562a18
+  - 3169a38c2656
+  - 01210c4e9144
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: getorganelle
   owner: iuc
   revisions:
-  - ba88bc5a6446
-  - 8b330a577046
   - 06bcf65179fb
+  - 8b330a577046
+  - ba88bc5a6446
   - 7348b69e5109
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfastats
   owner: bgruening
   revisions:
+  - 690c2caa367e
+  - 6ec1b853c8fd
   - 5127a713de83
   - 3ef480892a9f
   - 3fba9c77550a
-  - 690c2caa367e
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hapcut2
@@ -134,23 +135,23 @@ tools:
 - name: hifiasm
   owner: bgruening
   revisions:
-  - 366a11d316a7
-  - 6505bd37670d
-  - df25d4fb79b7
-  - 41cea2aa2dce
-  - 0ee0c3089254
-  - 5bec28269d95
-  - 284a1cb82b61
+  - 045c7c3d8e59
+  - ec9e21e9c71b
+  - 71740308d412
+  - f3c89da3af16
   - 3f7be05a1597
   - 5f625c63b8bc
-  - 71740308d412
-  - ec9e21e9c71b
-  - 60024a528cbd
+  - 6505bd37670d
   - 2061fb3b81b4
-  - 045c7c3d8e59
+  - 0ee0c3089254
+  - 366a11d316a7
   - 9ef6920c3089
-  - f3c89da3af16
+  - 284a1cb82b61
+  - 41cea2aa2dce
+  - 60024a528cbd
   - da9d8bf98802
+  - 5bec28269d95
+  - df25d4fb79b7
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: links
@@ -174,43 +175,43 @@ tools:
 - name: megahit
   owner: iuc
   revisions:
+  - de387b2b2803
   - 7518ee87b53d
   - 14ddfc8ffb93
   - a96f3ad4e0d8
-  - de387b2b2803
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: merqury
   owner: iuc
   revisions:
   - 39edec572bae
-  - eb7b00ec347d
+  - 09c589057ee8
   - f8113c25bc6b
   - d7edbc9c3a07
-  - 09c589057ee8
+  - eb7b00ec347d
   - 9d79beb19ac3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: meryl
   owner: iuc
   revisions:
+  - 51c2360aa807
   - eadfd71dde37
   - 29dabd8db6f2
-  - 51c2360aa807
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaspades
   owner: nml
   revisions:
-  - f369ef5f210b
-  - f338e9942b27
   - 3ca2d2a9068c
+  - eb7a370f6588
+  - f338e9942b27
+  - 99ecfdafc64f
   - 2ecf5a570907
+  - fd128c111ab0
   - 606b09cc9860
+  - f369ef5f210b
   - e731ea24e48d
-  - eb7a370f6588
-  - fd128c111ab0
-  - 99ecfdafc64f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minia
@@ -222,11 +223,11 @@ tools:
 - name: miniasm
   owner: iuc
   revisions:
-  - a7b889b90140
   - 8dee0218ac7d
-  - 8b6d0d85252b
-  - 73a3846701e1
+  - a7b889b90140
   - b799a615995d
+  - 73a3846701e1
+  - 8b6d0d85252b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitobim
@@ -244,9 +245,9 @@ tools:
 - name: novoplasty
   owner: iuc
   revisions:
-  - 15200570e926
   - 64a1c751d99b
   - 7c2f5268d01c
+  - 15200570e926
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pilon
@@ -258,13 +259,13 @@ tools:
 - name: pretext_map
   owner: iuc
   revisions:
+  - 8fef980d48b5
   - 02831bf9e95f
+  - bbe19ef04a74
+  - d256a51a656b
   - 2b16ba799da9
   - 79b48f02db49
-  - 8fef980d48b5
-  - bbe19ef04a74
   - dfb8a4497339
-  - d256a51a656b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: purge_dups
@@ -279,25 +280,25 @@ tools:
   owner: iuc
   revisions:
   - 72472698a2df
-  - 675488238c96
-  - ebb0dcdb621a
-  - 7594365c546b
   - 875d0f36d66f
   - 6fcbee531de6
+  - ebb0dcdb621a
+  - 7594365c546b
+  - 3061c8b029e5
   - 342a1d1fed7b
   - 59db8ea8c845
-  - 3061c8b029e5
+  - 675488238c96
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: racon
   owner: bgruening
   revisions:
-  - 39bed8de8017
   - a199cd7ac344
   - cd06929b224b
   - aa39b19ca11e
-  - d865b62f501c
+  - 39bed8de8017
   - 78c533842eeb
+  - d865b62f501c
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ragtag
@@ -311,10 +312,10 @@ tools:
   revisions:
   - 33b7d8481a76
   - f8564b2d7f63
+  - 3edba9afc9bc
   - 5c55448d0f33
   - 2b2a352488fa
   - f11b994b7eb2
-  - 3edba9afc9bc
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnaquast
@@ -327,13 +328,13 @@ tools:
 - name: rnaspades
   owner: iuc
   revisions:
-  - 5fc94b3a4704
   - 53c2bc8c2ae3
-  - ef69617ecb42
+  - 5fc94b3a4704
   - 1d06c8b38e77
-  - e122f9101584
-  - 378e55aeeb25
   - 28189050e437
+  - 378e55aeeb25
+  - e122f9101584
+  - ef69617ecb42
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: shasta
@@ -345,30 +346,30 @@ tools:
 - name: shovill
   owner: iuc
   revisions:
-  - d9f6a00b6db7
-  - 196a599ec43d
   - ee17a294d3a3
   - 865119fcb694
-  - f698c7604b3b
-  - ad80238462c1
+  - d9f6a00b6db7
   - 83ead2be47b2
+  - ad80238462c1
+  - f698c7604b3b
+  - 196a599ec43d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: smudgeplot
   owner: galaxy-australia
   revisions:
-  - 015283de3004
   - 5e0825476fb7
   - 24e471d13fe9
+  - 015283de3004
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_biosyntheticspades
   owner: iuc
   revisions:
   - 1bb12736175c
-  - c33a476f4001
-  - 904bf932cf78
   - 604782a8a53a
+  - 904bf932cf78
+  - c33a476f4001
   - 051fd2db8a27
   - 7490b213baa9
   - 1fc82fe7ebef
@@ -377,128 +378,128 @@ tools:
 - name: spades_coronaspades
   owner: iuc
   revisions:
-  - 9678993ca5bd
+  - fee85957cebe
   - d6e617c4e338
-  - 808b3a0a6716
-  - ad8b536d1caa
+  - 9678993ca5bd
   - 655fa188c3cc
-  - fee85957cebe
   - 34305b013402
+  - ad8b536d1caa
+  - 808b3a0a6716
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaplasmidspades
   owner: iuc
   revisions:
-  - b8002c3f7141
-  - e5a3b75a271f
-  - 037f9927c4ff
   - 8d4b90bf9caf
-  - 6b5a5842531e
+  - e5a3b75a271f
   - 7e27faaad80e
+  - b8002c3f7141
+  - 6b5a5842531e
   - 21da31ed41a1
+  - 037f9927c4ff
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaviralspades
   owner: iuc
   revisions:
+  - 9de69775f512
+  - 7922870efcca
+  - f1532cb33c75
+  - 328aa71f0f3c
   - 5b26685e5d3b
   - 86f66ab58e14
   - 2a10645aeadd
-  - 328aa71f0f3c
-  - f1532cb33c75
-  - 7922870efcca
-  - 9de69775f512
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_plasmidspades
   owner: iuc
   revisions:
-  - 85fb02c43042
-  - 340bc17f49cf
   - 6aad515a5270
-  - e41dcb0e913b
   - 8cc856b935ee
+  - e41dcb0e913b
+  - 85fb02c43042
   - 1708851f8804
+  - 340bc17f49cf
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_rnaviralspades
   owner: iuc
   revisions:
-  - d159735a6a9f
-  - de1260f8a300
-  - 249f6a28c751
+  - d5fb354f745d
   - b3490b036c5a
   - b65a43f70b99
-  - d5fb354f745d
+  - de1260f8a300
+  - d159735a6a9f
   - 6357b127161e
+  - 249f6a28c751
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades
   owner: nml
   revisions:
-  - 33368fec3b70
-  - dd7ad84f3943
   - b7829778729f
-  - d5887ace0dd4
   - a90db5dbaaf3
-  - 9006e5836729
   - 7897763d14ec
+  - d5887ace0dd4
+  - 33368fec3b70
+  - dd7ad84f3943
   - d2d1df21dfb9
+  - 9006e5836729
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_cluster
   owner: iuc
   revisions:
-  - ced385aa976d
   - ed2425b9fd27
-  - 505a9833ab5d
   - 8f631679571f
   - 189e837009c9
+  - 505a9833ab5d
+  - ced385aa976d
   - 6f4c8ad6ea01
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_consensus
   owner: iuc
   revisions:
+  - 356afed970b4
   - f31d376ce725
+  - d40ed4eb0c0e
   - 19bdfd1e6fe3
-  - 356afed970b4
   - e59bee4565b3
   - 9ded6109434a
-  - d40ed4eb0c0e
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_partition
   owner: iuc
   revisions:
-  - ebd801e712bc
-  - 6dd935e4984b
   - b23249f81bc4
+  - 6dd935e4984b
   - af40e971a8cc
-  - 4688ae3b49b5
   - 80a17897564d
+  - ebd801e712bc
+  - 4688ae3b49b5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_reconcile_msa
   owner: iuc
   revisions:
+  - bb11fefb23a3
   - cb1e3db43020
+  - b64696992ee9
   - 59bd28f6265d
-  - bb11fefb23a3
   - 937ea677d437
   - b5e35a2ca4f3
-  - b64696992ee9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_subsample
   owner: iuc
   revisions:
-  - 05bd7504fdb2
   - 6bfab4a4a988
-  - 2628f6790eda
   - 383bb5ad32e2
-  - 6015aa0303f2
   - cb4768eeca3b
+  - 2628f6790eda
+  - 6015aa0303f2
+  - 05bd7504fdb2
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unicycler
@@ -506,27 +507,27 @@ tools:
   revisions:
   - 3e44ef016b45
   - 0a3a602cd1e3
-  - 6e26c9afd301
   - e92675014ac9
+  - 6e26c9afd301
+  - 8f9f06995f98
   - e022dff952df
   - 9e3e80cc4ad4
-  - 8f9f06995f98
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvet
   owner: devteam
   revisions:
+  - 5da9a0e2fb2d
   - 8d09f8be269e
   - 08256557922f
-  - 5da9a0e2fb2d
   - 920677cd220f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvetoptimiser
   owner: simon-gladman
   revisions:
-  - 4a53b89fa703
   - 37d88f41c810
+  - 4a53b89fa703
   - 82398ba86ba7
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bacterial_typing.yml b/usegalaxy.org.au/bacterial_typing.yml
index a65c7fee8..5468a4f18 100644
--- a/usegalaxy.org.au/bacterial_typing.yml
+++ b/usegalaxy.org.au/bacterial_typing.yml
@@ -3,25 +3,25 @@ tools:
   owner: iuc
   revisions:
   - 4768f7f8e93f
-  - 392f100eebcd
   - bfd290fe1588
   - 1ae00120dd24
+  - 392f100eebcd
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mlst
   owner: iuc
   revisions:
+  - 1f5641a52664
   - 8e8dc9a1e3e5
   - ded48b36f3b7
   - 31812e7a1315
-  - 1f5641a52664
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sistr_cmd
   owner: nml
   revisions:
+  - 17fcac7ddf54
   - 5c8ff92e38a9
   - 24a7a95867b0
-  - 17fcac7ddf54
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bb_tools.yml b/usegalaxy.org.au/bb_tools.yml
index 4dfba3277..d19c3d42c 100644
--- a/usegalaxy.org.au/bb_tools.yml
+++ b/usegalaxy.org.au/bb_tools.yml
@@ -2,13 +2,13 @@ tools:
 - name: bbtools_bbduk
   owner: iuc
   revisions:
-  - 7beb76ffbc0f
+  - d1f62024a08b
+  - 159b04e36791
+  - a9c9d768b751
   - 1c427e24fb79
+  - 7beb76ffbc0f
   - 0840ba83860c
-  - a9c9d768b751
   - 204a131e47db
-  - d1f62024a08b
-  - 159b04e36791
   tool_panel_section_label: BB Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bbtools_bbmerge
diff --git a/usegalaxy.org.au/bed.yml b/usegalaxy.org.au/bed.yml
index 70dcaacbf..d87f8184d 100644
--- a/usegalaxy.org.au/bed.yml
+++ b/usegalaxy.org.au/bed.yml
@@ -2,17 +2,17 @@ tools:
 - name: bedtools
   owner: iuc
   revisions:
-  - 87ee588b3d45
-  - dde39ba9c031
+  - b28e0cfa7ba1
+  - ce3c7f062223
   - a8eabd2838f6
-  - a68aa6c1204a
-  - 64e2edfe7a2c
-  - a1a923cd89e8
   - 07e8b80f278c
-  - 589e7e57fd6d
   - 0a5c785ac6db
-  - b28e0cfa7ba1
-  - ce3c7f062223
   - e19bebe96cd2
+  - a1a923cd89e8
+  - dde39ba9c031
+  - a68aa6c1204a
+  - 87ee588b3d45
+  - 589e7e57fd6d
+  - 64e2edfe7a2c
   tool_panel_section_label: BED
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/blast.yml b/usegalaxy.org.au/blast.yml
index 37061b03e..0ef8420c5 100644
--- a/usegalaxy.org.au/blast.yml
+++ b/usegalaxy.org.au/blast.yml
@@ -8,30 +8,30 @@ tools:
 - name: diamond
   owner: bgruening
   revisions:
-  - f921014aba5a
-  - 54f751e413f4
   - 62c9df8382c2
   - e8ac2b53f262
+  - 54f751e413f4
+  - f921014aba5a
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_blast_plus
   owner: devteam
   revisions:
-  - acf4e47b734c
-  - 2889433c7ae1
-  - e25d3acf6e68
+  - d999e774072a
   - cbf3f518b668
-  - 0e3cf9594bb7
-  - a52d2d93e595
   - 6f386c5dc4fb
+  - acf4e47b734c
+  - 0e3cf9594bb7
+  - e25d3acf6e68
   - 5edc472ec434
-  - d999e774072a
+  - 2889433c7ae1
+  - a52d2d93e595
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: taxonomy_krona_chart
   owner: crs4
   revisions:
-  - 1334cb4c6b68
   - e9005d1f3cfd
+  - 1334cb4c6b68
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/chemicaltoolbox.yml b/usegalaxy.org.au/chemicaltoolbox.yml
index 28199acf9..47c098b5c 100644
--- a/usegalaxy.org.au/chemicaltoolbox.yml
+++ b/usegalaxy.org.au/chemicaltoolbox.yml
@@ -8,13 +8,13 @@ tools:
 - name: ambertools_acpype
   owner: chemteam
   revisions:
+  - 710301bc46fa
   - 6ca543ec1bf8
+  - 27ee142314a9
+  - da6bd1975a71
   - 095ad4d096d1
   - c8cdde00b105
   - f4230f116196
-  - 27ee142314a9
-  - da6bd1975a71
-  - 710301bc46fa
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: autodock_vina_prepare_box
@@ -131,73 +131,73 @@ tools:
   owner: chemteam
   revisions:
   - 88076940fa94
-  - 0fac8e2afc13
   - 79cfd9ead848
   - 3b8a9d5ced85
   - bfb65cb551d8
+  - 0fac8e2afc13
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_em
   owner: chemteam
   revisions:
-  - d532b7e5f64b
-  - f5d979cb4b54
   - 715cd0e87781
+  - f5d979cb4b54
   - eb6564a60136
   - 55918daa5651
   - b46d4b4d995c
+  - d532b7e5f64b
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_energy
   owner: chemteam
   revisions:
-  - dae135dfd519
-  - f26afd1b7104
   - fdf2cc80adb5
-  - 5579659312e6
   - d2f955aea23a
+  - f26afd1b7104
+  - dae135dfd519
+  - 5579659312e6
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_merge_topology_files
   owner: chemteam
   revisions:
   - 319a28774da9
-  - bc31d02be922
   - d1d0efda35c0
+  - bc31d02be922
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_setup
   owner: chemteam
   revisions:
+  - 070e3ecc3fda
   - ed736e6eee39
-  - 2c349b027a01
   - cac1886249a2
   - 4da9ee404eab
-  - 070e3ecc3fda
+  - 2c349b027a01
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_sim
   owner: chemteam
   revisions:
-  - da8753545526
-  - 73008ef1f487
-  - c0c9a5024177
+  - f197e34c33a9
   - 525ca7c8065f
-  - d1f803b5943c
   - 2e219a2d9327
+  - d1f803b5943c
+  - c0c9a5024177
   - 807aa4c9293d
-  - f197e34c33a9
+  - da8753545526
+  - 73008ef1f487
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_solvate
   owner: chemteam
   revisions:
   - 7568ae18908a
-  - c4fbab8e03c5
-  - 27ea4e1a3f95
-  - 2c8ed1b52bf7
   - 1809414a9454
   - 61094e01eff9
+  - 27ea4e1a3f95
+  - c4fbab8e03c5
+  - 2c8ed1b52bf7
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_trj
@@ -209,10 +209,10 @@ tools:
 - name: md_converter
   owner: chemteam
   revisions:
-  - ba83f0923369
-  - 79e8ab8f1e81
   - 730ef07b90ae
   - d7ec25187599
+  - 79e8ab8f1e81
+  - ba83f0923369
   - ccfbd956a2d3
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -268,8 +268,8 @@ tools:
 - name: openbabel_compound_convert
   owner: bgruening
   revisions:
-  - b59c91adeac1
   - e2c36f62e22f
+  - b59c91adeac1
   - e6011617c748
   - 4242b4d68e9c
   tool_panel_section_label: ChemicalToolBox
@@ -351,9 +351,9 @@ tools:
   owner: bgruening
   revisions:
   - bf99565cec1f
-  - 9b48456a96fe
   - 85fad59f8168
   - d4c67ced6abc
+  - 9b48456a96fe
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vmd_hbonds
diff --git a/usegalaxy.org.au/chip_seq.yml b/usegalaxy.org.au/chip_seq.yml
index 060325c67..ceaacd674 100644
--- a/usegalaxy.org.au/chip_seq.yml
+++ b/usegalaxy.org.au/chip_seq.yml
@@ -2,11 +2,11 @@ tools:
 - name: diffbind
   owner: bgruening
   revisions:
-  - 163688bb8f73
-  - 2605cbdaa7d8
   - c97a786e8fb5
-  - f907216064f6
   - fa56d93f7980
+  - 2605cbdaa7d8
+  - 163688bb8f73
+  - f907216064f6
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genrich
@@ -18,18 +18,18 @@ tools:
 - name: macs21
   owner: pjbriggs
   revisions:
-  - 4124781932db
   - 11cf21ee4242
+  - 4124781932db
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: macs2
   owner: iuc
   revisions:
-  - f5d67c722d67
+  - 86e2413cf3f8
   - 495a4173006f
   - 424aefbd7777
-  - 86e2413cf3f8
   - 640d3af5d833
+  - f5d67c722d67
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnachipintegrator
diff --git a/usegalaxy.org.au/collection_operations.yml b/usegalaxy.org.au/collection_operations.yml
index 5817b2ea9..82e174174 100644
--- a/usegalaxy.org.au/collection_operations.yml
+++ b/usegalaxy.org.au/collection_operations.yml
@@ -2,17 +2,17 @@ tools:
 - name: bundle_collections
   owner: nml
   revisions:
-  - 705ebd286b57
   - cd6da887a5f4
+  - 705ebd286b57
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collapse_collections
   owner: nml
   revisions:
+  - 90981f86000f
+  - 33151a38533a
   - 25136a2b0cfe
   - 830961c48e42
-  - 33151a38533a
-  - 90981f86000f
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_column_join
@@ -32,15 +32,15 @@ tools:
   owner: bgruening
   revisions:
   - 2dae863c8f42
+  - 6cbe2f30c2d7
   - baabc30154cd
   - 0046692724f9
-  - 6cbe2f30c2d7
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unzip
   owner: imgteam
   revisions:
-  - 57f0914ddb7b
   - 38eec75fbe9b
+  - 57f0914ddb7b
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/convert_formats.yml b/usegalaxy.org.au/convert_formats.yml
index 47f013008..29b9ccb45 100644
--- a/usegalaxy.org.au/convert_formats.yml
+++ b/usegalaxy.org.au/convert_formats.yml
@@ -15,32 +15,32 @@ tools:
 - name: biom_add_metadata
   owner: iuc
   revisions:
+  - 5e1240a87bcb
+  - 0b3c3ad92827
   - 6ef0b5664c69
+  - a3b86937ead6
+  - f3a19509108a
   - ab9350a8ab4d
-  - 0b3c3ad92827
-  - 5e1240a87bcb
-  - 4a6ee918c13a
-  - 3b6f97e7094c
   - e3cbd2287f63
-  - a3b86937ead6
+  - 3b6f97e7094c
+  - 4a6ee918c13a
   - 367b1ed91207
-  - f3a19509108a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: biom_convert
   owner: iuc
   revisions:
-  - 54ccb7e1f49a
-  - 584008e574b2
-  - e177a8ea0bf1
-  - bd46669113b9
   - e525f9ffb9ac
+  - 72ed72122deb
   - 1b5fc03380d4
-  - d4d4e9febf5c
   - 33c99804a32f
-  - 501c21cce614
+  - bd46669113b9
+  - d4d4e9febf5c
+  - e177a8ea0bf1
+  - 54ccb7e1f49a
   - 091bb5922a82
-  - 72ed72122deb
+  - 584008e574b2
+  - 501c21cce614
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bp_genbank2gff3
@@ -58,31 +58,31 @@ tools:
 - name: fasta_to_tabular
   owner: devteam
   revisions:
-  - e7ed3c310b74
   - 7e801ab2b70e
+  - e7ed3c310b74
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_to_fasta
   owner: devteam
   revisions:
-  - 8979c288aefb
   - 77b41c89d856
+  - 8979c288aefb
   - 186b8d913e6c
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_to_tabular
   owner: devteam
   revisions:
-  - 4b347702c4aa
   - 43807a65369f
+  - 4b347702c4aa
   - 614a63f14adf
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfa_to_fa
   owner: iuc
   revisions:
-  - 8e9d604e92f4
   - e33c82b63727
+  - 8e9d604e92f4
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gffcompare_to_bed
@@ -114,15 +114,15 @@ tools:
 - name: mz_to_sqlite
   owner: galaxyp
   revisions:
-  - f5c632894818
   - 705821bf30d2
+  - f5c632894818
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bam_to_cram
   owner: iuc
   revisions:
-  - b9ea85dfaf45
   - 18dbde5680c0
+  - b9ea85dfaf45
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tabular_to_fasta
@@ -135,18 +135,18 @@ tools:
   owner: devteam
   revisions:
   - 2dcfbbf9071a
-  - 68f57cc8fad0
   - 78fb18899c99
+  - 68f57cc8fad0
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: thermo_raw_file_converter
   owner: galaxyp
   revisions:
-  - 19e45916daf9
-  - 63769c4217a7
+  - 26c6706bfb07
   - b9b385097f13
+  - 19e45916daf9
   - 92ac8e086317
-  - 26c6706bfb07
+  - 63769c4217a7
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fatovcf
diff --git a/usegalaxy.org.au/deeptools.yml b/usegalaxy.org.au/deeptools.yml
index 8db9fc3bb..e94bbfa90 100644
--- a/usegalaxy.org.au/deeptools.yml
+++ b/usegalaxy.org.au/deeptools.yml
@@ -2,170 +2,170 @@ tools:
 - name: deeptools_bam_compare
   owner: bgruening
   revisions:
+  - de72ba3ed6f2
+  - c929a006727f
   - 268e91e540ee
+  - e821645ef8fc
   - 5f6d123679f4
-  - c929a006727f
   - 29451af70c52
-  - de72ba3ed6f2
-  - e821645ef8fc
   - a1ca9bccc7f2
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_coverage
   owner: bgruening
   revisions:
+  - 12af64f93288
   - 7a7fd0f5f15d
   - 0e143b4c3987
-  - 2d2cf5c1ea8a
   - 0e49b109abc2
-  - 5d11599b8a7d
   - bb1e4f63e0e6
-  - 12af64f93288
+  - 2d2cf5c1ea8a
+  - 5d11599b8a7d
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_pe_fragmentsize
   owner: bgruening
   revisions:
-  - 7c1beb6d6eca
   - dc059492a995
   - c06951d10364
-  - 81b1e3e1fc6c
   - 1d848bc4585f
+  - 81b1e3e1fc6c
+  - 7c1beb6d6eca
   - 195e98217334
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bigwig_compare
   owner: bgruening
   revisions:
+  - 3d211717a775
   - 07418a30ed01
-  - 93eb012d9eed
   - 71aa86af6762
-  - bfff7454b59a
   - a67ac707496a
+  - 93eb012d9eed
+  - bfff7454b59a
   - 26e7304d6737
-  - 3d211717a775
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_gc_bias
   owner: bgruening
   revisions:
-  - 29fcfd36e90a
-  - 2bc10a9ca58b
   - b8858746dc1f
+  - 29fcfd36e90a
   - 56d5b797ce84
-  - dd0b7398bb96
+  - 2bc10a9ca58b
   - 26983857c91a
+  - dd0b7398bb96
   - 5be24eba848d
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix_operations
   owner: bgruening
   revisions:
-  - c3e012dfe21f
-  - 7e6bcd2e5128
-  - 9384cd033f30
-  - 72bfafe3330b
+  - 7ef978dc1b8a
   - ee3a1b0f45f1
+  - 72bfafe3330b
+  - 9384cd033f30
   - e6d0bff01239
-  - 7ef978dc1b8a
+  - c3e012dfe21f
+  - 7e6bcd2e5128
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix
   owner: bgruening
   revisions:
-  - fb9cf9c97ec4
+  - fd1275e01605
   - 9470f29702f8
-  - b73e213add0c
+  - 167788df3b46
   - d9a637e83828
   - 514fa53b5efb
-  - fd1275e01605
+  - fb9cf9c97ec4
   - a60c359ec43c
-  - 167788df3b46
+  - b73e213add0c
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_correct_gc_bias
   owner: bgruening
   revisions:
-  - a02cfa31e9cb
-  - 5bffaa8354a1
+  - ca0616bb2cdf
   - e479c7ca5570
+  - c34d11ea4ba6
+  - a02cfa31e9cb
   - 2c37ce318bc3
   - 86febdcc4283
-  - ca0616bb2cdf
-  - c34d11ea4ba6
+  - 5bffaa8354a1
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bam_summary
   owner: bgruening
   revisions:
-  - 69a8621ca2f0
   - 78f405266706
-  - 004aea905d4d
   - 192ef85c0b0b
+  - 004aea905d4d
+  - 69a8621ca2f0
+  - 2d466b530754
   - 01fb6a7654e6
   - 1fcb7adc39b8
-  - 2d466b530754
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bigwig_summary
   owner: bgruening
   revisions:
-  - 459cfa861f0b
-  - 9ecba5e225a6
+  - db940c262830
   - 137c4beed34b
   - 2f9e4843f480
+  - 9ecba5e225a6
   - d580d6acd1df
   - d9ce4897dbb2
-  - db940c262830
   - 3c9f0c486cca
+  - 459cfa861f0b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_correlation
   owner: bgruening
   revisions:
+  - 2c66e43f1c86
+  - fbe773640707
+  - bad3ca889618
+  - fd408d755394
   - 32e451def88c
   - f264afa9fa6f
-  - fd408d755394
-  - fbe773640707
   - bd7db9e2f2cb
-  - 2c66e43f1c86
-  - bad3ca889618
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_coverage
   owner: bgruening
   revisions:
+  - 4e12ea27f788
+  - 56bce3c82278
+  - 7e361d147872
   - 7fda5607e777
-  - 3b9d990a0a0e
   - 9368fbc49c8b
-  - 56bce3c82278
   - 231994413f89
-  - 7e361d147872
-  - 4e12ea27f788
+  - 3b9d990a0a0e
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_enrichment
   owner: bgruening
   revisions:
-  - e65d16fb2724
   - 94ca68515826
-  - b1779366c8e9
-  - 4431f39ede55
   - c03c3384cd81
   - ce4ce3316f74
   - d9114ef1c8a5
+  - 4431f39ede55
+  - e65d16fb2724
+  - b1779366c8e9
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_fingerprint
   owner: bgruening
   revisions:
+  - 23f7c5f1fdaf
   - b88ebb3672a1
-  - f8fc4e5aff9d
-  - 2da482e408b8
   - 4ed32329e0ed
   - 793665fff0f8
+  - f8fc4e5aff9d
   - d57251071381
-  - 23f7c5f1fdaf
+  - 2da482e408b8
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_heatmap
@@ -173,34 +173,34 @@ tools:
   revisions:
   - 512155688d98
   - ba6efa77fb79
-  - 010e58e9d822
   - 25d830337d31
-  - e4c7985d4585
   - c60570fa602f
+  - 010e58e9d822
   - a7849312d328
   - a4dfb122e52b
+  - e4c7985d4585
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_pca
   owner: bgruening
   revisions:
-  - 443d9a9d6d11
-  - c899e0ccff8c
-  - aa200e4f3939
-  - 4d678170d29b
   - 38e3f226248b
   - 69264da0ce77
+  - 4d678170d29b
+  - c899e0ccff8c
+  - aa200e4f3939
+  - 443d9a9d6d11
   - 00d869ea03a1
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_profile
   owner: bgruening
   revisions:
-  - c361b12d207a
-  - a2d70c4fd406
   - aac8444d6681
   - d806504e96d9
+  - a2d70c4fd406
   - 6662b1a8d326
   - 10301d137111
+  - c361b12d207a
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/dna_metabarcoding.yml b/usegalaxy.org.au/dna_metabarcoding.yml
index 8c2bc37b3..e8ed5e613 100644
--- a/usegalaxy.org.au/dna_metabarcoding.yml
+++ b/usegalaxy.org.au/dna_metabarcoding.yml
@@ -9,15 +9,15 @@ tools:
 - name: obi_clean
   owner: iuc
   revisions:
-  - 08d873cdd5f6
   - 7d16de45c021
+  - 08d873cdd5f6
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_convert
   owner: iuc
   revisions:
-  - e328ced6cf0a
   - 4d705e3443a7
+  - e328ced6cf0a
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_grep
@@ -30,8 +30,8 @@ tools:
 - name: obi_illumina_pairend
   owner: iuc
   revisions:
-  - 94f412098ac8
   - 8cb6bd511879
+  - 94f412098ac8
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_ngsfilter
@@ -51,8 +51,8 @@ tools:
 - name: obi_stat
   owner: iuc
   revisions:
-  - 39320fee9d70
   - 5f4544915893
+  - 39320fee9d70
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_tab
diff --git a/usegalaxy.org.au/emboss.yml b/usegalaxy.org.au/emboss.yml
index c20dc3f9c..9e65a9209 100644
--- a/usegalaxy.org.au/emboss.yml
+++ b/usegalaxy.org.au/emboss.yml
@@ -2,8 +2,8 @@ tools:
 - name: emboss_5
   owner: devteam
   revisions:
-  - 832c20329690
   - ce385837c160
+  - 832c20329690
   - dba489bfcd62
   - 63dd26468588
   tool_panel_section_label: EMBOSS
diff --git a/usegalaxy.org.au/epigenetics.yml b/usegalaxy.org.au/epigenetics.yml
index a3d84dd92..90b0bdb1f 100644
--- a/usegalaxy.org.au/epigenetics.yml
+++ b/usegalaxy.org.au/epigenetics.yml
@@ -8,11 +8,11 @@ tools:
 - name: bwameth
   owner: iuc
   revisions:
-  - 6da3972210ee
-  - cf1322aeb137
   - 62f5fab76dfb
   - d82648ad25a3
   - 29bdbc353f20
+  - 6da3972210ee
+  - cf1322aeb137
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metilene
diff --git a/usegalaxy.org.au/fastafastq.yml b/usegalaxy.org.au/fastafastq.yml
index 0dfeb3c0a..261dda9c8 100644
--- a/usegalaxy.org.au/fastafastq.yml
+++ b/usegalaxy.org.au/fastafastq.yml
@@ -8,33 +8,33 @@ tools:
 - name: cutadapt
   owner: lparsons
   revisions:
-  - 48f587c13075
+  - 288f97432497
+  - b1c926deaa2d
   - 5915ea1ec9b1
-  - 093678460093
+  - 8c0175e03cee
   - 44e2cc14f75b
-  - c5e2e5902201
-  - 660cffd8d92a
   - 4e5056fefd88
+  - 660cffd8d92a
   - 5eb7e84243f2
-  - c053d4cad713
-  - 49370cb85f0f
+  - 135b80fb1ac2
+  - 093678460093
+  - e4691e1589d3
   - 64172f1c1202
-  - 8c0175e03cee
-  - 288f97432497
-  - b1c926deaa2d
+  - 48f587c13075
+  - c5e2e5902201
+  - de6cebe3c043
+  - c053d4cad713
   - c4b82dce8335
-  - 135b80fb1ac2
   - fe74900d6dc7
   - 8665bcc8b847
-  - de6cebe3c043
-  - e4691e1589d3
+  - 49370cb85f0f
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_clipping_histogram
   owner: devteam
   revisions:
-  - 8889eb864cef
   - 9db07fd39f85
+  - 8889eb864cef
   - f666895cbebd
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -61,16 +61,16 @@ tools:
 - name: fasta_formatter
   owner: devteam
   revisions:
-  - 9457a20156db
   - 516b97a23d7e
+  - 9457a20156db
   - 859422bcb689
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_merge_files_and_filter_unique_sequences
   owner: galaxyp
   revisions:
-  - 2904d46167da
   - f546e7278f04
+  - 2904d46167da
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_nucleotide_changer
@@ -84,59 +84,60 @@ tools:
 - name: fasta_stats
   owner: iuc
   revisions:
-  - 56022eb50bbd
-  - cd0874854f51
   - 9c620a950d3a
+  - cd0874854f51
   - 0dbb995c7d35
+  - 56022eb50bbd
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastp
   owner: iuc
   revisions:
-  - 65b93b623c77
   - dbf9c561ef29
-  - c59d48774d03
+  - 65b93b623c77
   - 1d8fe9bc4cb0
+  - c59d48774d03
   - d60c3f704da0
+  - dbfc505896e9
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_combiner
   owner: devteam
   revisions:
+  - f1dc2a761c30
   - b05e39b9c170
   - 9115b978ce10
-  - f1dc2a761c30
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_filter
   owner: devteam
   revisions:
   - 81a9090d6df3
-  - '144275714590'
   - 10b75444feae
+  - '144275714590'
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_groomer
   owner: devteam
   revisions:
-  - e9f8633db0a2
-  - 8611b80a14d6
   - 47e5dbc3e790
+  - 8611b80a14d6
+  - e9f8633db0a2
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_manipulation
   owner: devteam
   revisions:
-  - 5b87038565bb
   - e30352e889fe
+  - 5b87038565bb
   - 7861f3b10c68
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_masker_by_quality
   owner: devteam
   revisions:
-  - 4e1d64e6385f
   - 9dfda4e310ed
+  - 4e1d64e6385f
   - 9282652e7234
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -151,49 +152,49 @@ tools:
 - name: fastq_paired_end_interlacer
   owner: devteam
   revisions:
-  - b41c2c1bcfbf
-  - 2ccb8dcabddc
   - 3e396e702cea
+  - 2ccb8dcabddc
+  - b41c2c1bcfbf
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_joiner
   owner: devteam
   revisions:
-  - 8d958759cf2a
   - 09a2199cd356
+  - 8d958759cf2a
   - c885369b207b
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_splitter
   owner: devteam
   revisions:
-  - 397dc333436b
+  - e39cc71d3ed6
   - 249c8393f2d4
+  - 397dc333436b
   - 35e38452bb3f
-  - e39cc71d3ed6
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_quality_converter
   owner: devteam
   revisions:
-  - 54053ea6c77e
   - 74db4cffab1f
+  - 54053ea6c77e
   - 045f0e1043f7
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_stats
   owner: devteam
   revisions:
+  - f0e7deab6518
   - f86c27295151
   - b1cea1b2fcd0
-  - f0e7deab6518
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer
   owner: devteam
   revisions:
-  - f0b18efb97f1
   - b63b2bfb3ea3
+  - f0b18efb97f1
   - 33794bdb7fe0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -207,10 +208,10 @@ tools:
 - name: fastx_artifacts_filter
   owner: devteam
   revisions:
+  - 567d5b3c52b1
   - 09070cacefd8
-  - 529bccd5e4a1
   - d5e9e83cd3d8
-  - 567d5b3c52b1
+  - 529bccd5e4a1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_barcode_splitter
@@ -224,45 +225,45 @@ tools:
 - name: fastx_clipper
   owner: devteam
   revisions:
-  - cb1e251cac37
   - 90858c306551
-  - bdf1ce174e39
   - 736b8f6ee456
+  - bdf1ce174e39
+  - cb1e251cac37
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_collapser
   owner: devteam
   revisions:
-  - 07497255281e
-  - 421f0af4ee95
   - 7ce1891db6f5
+  - 421f0af4ee95
+  - 07497255281e
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_renamer
   owner: devteam
   revisions:
-  - 3599f5451ee2
   - 02f8a17a4ebd
   - f984bb114520
   - b29d37ca9e41
+  - 3599f5451ee2
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_reverse_complement
   owner: devteam
   revisions:
   - 6027ef51ef91
-  - 0c2907307ba4
-  - 177f0621c266
   - e246088b6e34
+  - 177f0621c266
+  - 0c2907307ba4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_trimmer
   owner: devteam
   revisions:
   - 377ac2829eac
-  - 73194cdd4f57
-  - 61b4cedc8934
   - 547e8d00f11c
+  - 61b4cedc8934
+  - 73194cdd4f57
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiadapterfilt
@@ -274,10 +275,10 @@ tools:
 - name: pear
   owner: iuc
   revisions:
+  - f69501361cec
+  - 2f804526f5fd
   - 037f0acc7830
   - b4c6f054210a
-  - 2f804526f5fd
-  - f69501361cec
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seq_select_by_id
@@ -290,15 +291,15 @@ tools:
 - name: seqkit_sort
   owner: iuc
   revisions:
-  - 61eb4cfc7313
   - fdc21382376d
+  - 61eb4cfc7313
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seqkit_stats
   owner: iuc
   revisions:
-  - fe1ae2ebf63d
   - 812705bcf39c
+  - fe1ae2ebf63d
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seqtk
@@ -319,18 +320,18 @@ tools:
   owner: iuc
   revisions:
   - bf04bd405d5b
-  - 71f649c23021
   - d3f58a0dc09d
+  - 71f649c23021
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_count
   owner: iuc
   revisions:
+  - a535cf1e5da4
   - 8250ea3a1501
   - 24013bf85a6f
   - 71ad4a56c40c
   - e654095ab143
-  - a535cf1e5da4
   - b557acca0b56
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -344,28 +345,28 @@ tools:
 - name: umi_tools_extract
   owner: iuc
   revisions:
-  - 27ac32a22ad2
-  - 9fa7803d1c51
+  - 7a7e33d28f62
   - 7accf7407811
+  - 9fa7803d1c51
+  - 6a675c3aa610
+  - 27ac32a22ad2
   - 828dba98cdb4
   - f3759eec3018
   - 015cf18f4a15
-  - 6a675c3aa610
-  - 7a7e33d28f62
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_group
   owner: iuc
   revisions:
-  - d6255614afd7
   - 428735be9764
+  - d6255614afd7
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_whitelist
   owner: iuc
   revisions:
+  - 4c8a1c7d3608
   - e4e12f0b3af1
   - 953b4821b183
-  - 4c8a1c7d3608
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/fastq_quality_control.yml b/usegalaxy.org.au/fastq_quality_control.yml
index 10e122866..36de02e82 100644
--- a/usegalaxy.org.au/fastq_quality_control.yml
+++ b/usegalaxy.org.au/fastq_quality_control.yml
@@ -2,30 +2,30 @@ tools:
 - name: fastq_quality_filter
   owner: devteam
   revisions:
+  - e41385662e5e
   - ce9cd02d5b88
   - 64e9a6afdd0c
-  - e41385662e5e
   - 7b4468117008
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer_by_quality
   owner: devteam
   revisions:
-  - 8050e091e99b
   - c64d534a763c
+  - 8050e091e99b
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqc
   owner: devteam
   revisions:
-  - 2c64fded1286
-  - 2b0c9d9fc6ca
-  - e7b2202befea
-  - 9da02be9c6cc
-  - f2e8552cf1d0
   - ff9530579d1f
-  - 3d0c7bdf12f5
   - 5ec9f6bceaee
+  - 3d0c7bdf12f5
+  - 9da02be9c6cc
+  - 2b0c9d9fc6ca
+  - f2e8552cf1d0
+  - e7b2202befea
+  - 2c64fded1286
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqe
@@ -39,47 +39,47 @@ tools:
 - name: fastx_nucleotides_distribution
   owner: devteam
   revisions:
+  - 18a51655db17
   - b6b54ba71bd8
   - ad116ae3f4d9
-  - 18a51655db17
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_quality_statistics
   owner: devteam
   revisions:
-  - 7306ec78632a
-  - 59003d0543cd
   - cc0fd298cc17
+  - 59003d0543cd
+  - 7306ec78632a
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filtlong
   owner: iuc
   revisions:
+  - 1f296803dfa3
   - 8880fb74ef56
   - a72af9de6bf5
-  - 1f296803dfa3
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: multiqc
   owner: iuc
   revisions:
-  - 5e33b465d8d5
-  - c1a4b5f3b432
-  - 75c93c70d094
-  - f7e2f1eb3a16
-  - b2f1f75d49c4
-  - 1c2db0054039
   - abfd8a6544d7
   - bf675f34b056
-  - 3d93dd18d9f8
+  - b2f1f75d49c4
+  - 75c93c70d094
+  - 5e33b465d8d5
   - 9a913cdee30e
+  - f7e2f1eb3a16
+  - c1a4b5f3b432
+  - 3d93dd18d9f8
+  - 1c2db0054039
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trim_galore
   owner: bgruening
   revisions:
-  - cd7e644cae1d
-  - 084bbd8ba7b8
   - 949f01671246
+  - 084bbd8ba7b8
+  - cd7e644cae1d
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/fetch_alignmentssequences.yml b/usegalaxy.org.au/fetch_alignmentssequences.yml
index 0dfc5355c..c01999d90 100644
--- a/usegalaxy.org.au/fetch_alignmentssequences.yml
+++ b/usegalaxy.org.au/fetch_alignmentssequences.yml
@@ -8,7 +8,7 @@ tools:
 - name: isescan
   owner: iuc
   revisions:
-  - 19f42b3ea391
   - 9e776e7fab4f
+  - 19f42b3ea391
   tool_panel_section_label: Fetch Alignments/Sequences
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/filter_and_sort.yml b/usegalaxy.org.au/filter_and_sort.yml
index 08819c5b5..f5582a134 100644
--- a/usegalaxy.org.au/filter_and_sort.yml
+++ b/usegalaxy.org.au/filter_and_sort.yml
@@ -2,8 +2,8 @@ tools:
 - name: filter_by_fasta_ids
   owner: galaxyp
   revisions:
-  - 3c623e81be77
   - dff7df6fcab5
+  - 3c623e81be77
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sample_seqs
diff --git a/usegalaxy.org.au/gemini_tools.yml b/usegalaxy.org.au/gemini_tools.yml
index b4ac2c2d1..94cc89784 100644
--- a/usegalaxy.org.au/gemini_tools.yml
+++ b/usegalaxy.org.au/gemini_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: gemini_actionable_mutations
   owner: iuc
   revisions:
-  - 142d95ab942e
   - 3630a6e624d4
+  - 142d95ab942e
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_amend
@@ -16,8 +16,8 @@ tools:
 - name: gemini_annotate
   owner: iuc
   revisions:
-  - 0c8f7322f8fc
   - f2f3bc622a16
+  - 0c8f7322f8fc
   - 8f53b238a360
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -31,8 +31,8 @@ tools:
 - name: gemini_comp_hets
   owner: iuc
   revisions:
-  - 7cf9bc210044
   - 62647e2637f6
+  - 7cf9bc210044
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_db_info
@@ -52,8 +52,8 @@ tools:
 - name: gemini_dump
   owner: iuc
   revisions:
-  - 96a2d270bf0f
   - 40f85b45e472
+  - 96a2d270bf0f
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_fusions
@@ -79,16 +79,16 @@ tools:
 - name: gemini_interactions
   owner: iuc
   revisions:
-  - 2550239feed5
   - 184aa4e686e2
+  - 2550239feed5
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_load
   owner: iuc
   revisions:
-  - 45296e47d565
-  - cf61daf064fe
   - b2c25142267e
+  - cf61daf064fe
+  - 45296e47d565
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_lof_sieve
@@ -115,16 +115,16 @@ tools:
 - name: gemini_qc
   owner: iuc
   revisions:
-  - 9e83673fa6d2
   - 86e46972e183
+  - 9e83673fa6d2
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_query
   owner: iuc
   revisions:
-  - 840fb4850be3
-  - da74170c55c7
   - 666f60a9331a
+  - da74170c55c7
+  - 840fb4850be3
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_recessive_and_dominant
@@ -151,8 +151,8 @@ tools:
 - name: gemini_set_somatic
   owner: iuc
   revisions:
-  - ef9991a4a9a7
   - e4e2128460e3
+  - ef9991a4a9a7
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_stats
@@ -165,7 +165,7 @@ tools:
 - name: gemini_windower
   owner: iuc
   revisions:
-  - 8f04952b8882
   - 0c58ba91d018
+  - 8f04952b8882
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/genome_editing.yml b/usegalaxy.org.au/genome_editing.yml
index 62d2c91e4..2a6e45eeb 100644
--- a/usegalaxy.org.au/genome_editing.yml
+++ b/usegalaxy.org.au/genome_editing.yml
@@ -2,8 +2,8 @@ tools:
 - name: mageck_count
   owner: iuc
   revisions:
-  - e329d44424d7
   - 3edbd1ff5602
+  - e329d44424d7
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_gsea
@@ -16,21 +16,21 @@ tools:
 - name: mageck_mle
   owner: iuc
   revisions:
-  - 26126538a86f
   - b36c85e37a48
+  - 26126538a86f
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_pathway
   owner: iuc
   revisions:
-  - 9744e1124d0f
   - 39a996d44e16
+  - 9744e1124d0f
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_test
   owner: iuc
   revisions:
-  - 9b4f4533c9ee
   - 688a8eccea71
+  - 9b4f4533c9ee
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/get_data.yml b/usegalaxy.org.au/get_data.yml
index 8eb6d41af..318972771 100644
--- a/usegalaxy.org.au/get_data.yml
+++ b/usegalaxy.org.au/get_data.yml
@@ -2,10 +2,10 @@ tools:
 - name: dbbuilder
   owner: galaxyp
   revisions:
-  - e9df53a75f3c
-  - b39347891609
-  - c1b437242fee
   - 983bf725dfc2
+  - c1b437242fee
+  - b39347891609
+  - e9df53a75f3c
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ega_download_client
@@ -17,54 +17,54 @@ tools:
 - name: ncbi_acc_download
   owner: iuc
   revisions:
-  - e063168e0a81
   - 1c58de56d587
   - 28587613264f
+  - e063168e0a81
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sra_tools
   owner: iuc
   revisions:
+  - 5e6237d58b0c
+  - 7068f48d0ef9
+  - aad3885b3216
+  - 69ebb7f46e45
+  - c441583adae5
   - 4df8de2d0e48
-  - 734abc7ac21d
-  - 8848455c0270
-  - 9a776b080193
-  - f5ea3ce9b9b0
-  - e08a7ad4378b
-  - ba931a59dd59
-  - 6591f049cf7e
+  - 83c7d564b128
   - 4317d3cb6cba
+  - e08a7ad4378b
+  - 6ea73833cf67
   - 653e89d73fc4
-  - 83c7d564b128
+  - 1ec814014652
+  - f8054ea1c365
   - 516a54ddf218
-  - 6ea73833cf67
-  - 7068f48d0ef9
-  - 5e6237d58b0c
+  - 8848455c0270
+  - f5ea3ce9b9b0
+  - 6591f049cf7e
+  - 734abc7ac21d
   - 1790dcf3c32d
-  - f8054ea1c365
-  - 69ebb7f46e45
-  - c441583adae5
-  - 1ec814014652
-  - aad3885b3216
+  - ba931a59dd59
+  - 9a776b080193
   - e407b9da183a
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unipept
   owner: galaxyp
   revisions:
-  - 21a560af5913
-  - 9aaa46d45472
   - 75b3b3d0adbf
+  - 9aaa46d45472
+  - 21a560af5913
   - 34758ab8aaa4
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: uniprot_rest_interface
   owner: bgruening
   revisions:
-  - af5eccf83605
+  - 95fb5712344f
   - 468c71dac78a
   - 054483e27a35
   - bfdc6a7ffd3a
-  - 95fb5712344f
+  - af5eccf83605
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/graphdisplay_data.yml b/usegalaxy.org.au/graphdisplay_data.yml
index ba419baf8..95be5f8f6 100644
--- a/usegalaxy.org.au/graphdisplay_data.yml
+++ b/usegalaxy.org.au/graphdisplay_data.yml
@@ -3,14 +3,14 @@ tools:
   owner: iuc
   revisions:
   - fd59d783248a
-  - 4b519282a05b
   - c4bde687c846
-  - ae9994cf526f
   - a64dc31ab7f2
   - 290a11559985
-  - 7f13dc906cb9
-  - 740057a5126d
   - df7356989ac1
+  - 740057a5126d
+  - 7f13dc906cb9
+  - ae9994cf526f
+  - 4b519282a05b
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: draw_stacked_barplots
@@ -28,9 +28,9 @@ tools:
 - name: fastq_quality_boxplot
   owner: devteam
   revisions:
-  - f95284aa2946
   - 7cf5b1d072b5
   - 867ab348287d
+  - f95284aa2946
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: geneiobio
@@ -42,29 +42,30 @@ tools:
 - name: ggplot2_heatmap2
   owner: iuc
   revisions:
+  - 51c6ccaace7e
   - ca7cb0eaad62
-  - 3b37b1b1c3a7
   - '566197475670'
   - 53460afd5115
+  - 3b37b1b1c3a7
   - 374e9062d874
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_heatmap
   owner: iuc
   revisions:
-  - 3d059e9c2fba
+  - da4c086cff5b
+  - 1a72f938213e
   - d3a9e32672ec
   - 10515715c940
-  - 1a72f938213e
-  - da4c086cff5b
+  - 3d059e9c2fba
   - 391a4cc45fea
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_histogram
   owner: iuc
   revisions:
-  - b0d96516e6a5
   - 6fc8bab811da
+  - b0d96516e6a5
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_pca
@@ -77,12 +78,12 @@ tools:
 - name: ggplot2_point
   owner: iuc
   revisions:
-  - 5298e06f14f9
+  - 5fe1dc76176e
+  - 1acf88921176
   - 299307abd804
+  - 5298e06f14f9
   - e3a675da7fd0
   - d0fc8b746d57
-  - 1acf88921176
-  - 5fe1dc76176e
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_violin
@@ -101,15 +102,15 @@ tools:
 - name: graphlan_annotate
   owner: iuc
   revisions:
-  - 5d6f8f0bef7c
   - 97e3b735ed22
+  - 5d6f8f0bef7c
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: graphlan
   owner: iuc
   revisions:
-  - 8f62f666dcb6
   - 6e8eb0c0d91f
+  - 8f62f666dcb6
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: histogram
@@ -127,17 +128,17 @@ tools:
 - name: jbrowse
   owner: iuc
   revisions:
-  - 667e17248bfe
-  - 1cfc579079a6
   - fd5dbf0f732e
-  - 2bb2e07a7a21
+  - 836d1aa3e89a
+  - a6e57ff585c0
   - 17359b808b01
+  - 1cfc579079a6
   - ca2def38369c
+  - 6cd09d7b5f37
+  - 667e17248bfe
+  - 2bb2e07a7a21
   - 4542035c1075
   - 112eb40ba6cf
-  - a6e57ff585c0
-  - 836d1aa3e89a
-  - 6cd09d7b5f37
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krona_text
@@ -155,8 +156,8 @@ tools:
 - name: pathview
   owner: iuc
   revisions:
-  - 03c13085aecc
   - fe154a7af404
+  - 03c13085aecc
   - f1691de443a7
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -176,17 +177,17 @@ tools:
 - name: plotly_ml_performance_plots
   owner: bgruening
   revisions:
-  - f234e2e59d76
   - 62e3a4e8c54c
-  - 85da91bbdbfb
   - 1c5dcef5ce0f
+  - f234e2e59d76
+  - 85da91bbdbfb
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_parallel_coordinates_plot
   owner: bgruening
   revisions:
-  - 9958188c6195
   - 7b21a9b5922f
+  - 9958188c6195
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_regression_performance_plots
@@ -214,20 +215,20 @@ tools:
   revisions:
   - 14e7c35f3d00
   - a1abfa420d9d
-  - 36b848d5f3ec
   - 360df4999907
-  - 4ac4e7083b7e
   - 326a3db8d9d1
   - 7dd841a32245
+  - 4ac4e7083b7e
+  - 36b848d5f3ec
   - 2824d77cd8f8
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: volcanoplot
   owner: iuc
   revisions:
-  - 73b8cb5bddcd
-  - 2f557f6abbfb
   - 83c573f2e73c
+  - 2f557f6abbfb
+  - 73b8cb5bddcd
   - 44608d0193ed
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/hca_single_cell.yml b/usegalaxy.org.au/hca_single_cell.yml
index 6800e6d5b..3cc5be278 100644
--- a/usegalaxy.org.au/hca_single_cell.yml
+++ b/usegalaxy.org.au/hca_single_cell.yml
@@ -35,8 +35,8 @@ tools:
 - name: scanpy_filter_cells
   owner: ebi-gxa
   revisions:
-  - 361608369dda
   - bf1e0bdec1db
+  - 361608369dda
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter_genes
@@ -63,8 +63,8 @@ tools:
 - name: scanpy_find_variable_genes
   owner: ebi-gxa
   revisions:
-  - 64dd8bb151e1
   - 79da59a0b180
+  - 64dd8bb151e1
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_integrate_bbknn
@@ -84,16 +84,16 @@ tools:
 - name: scanpy_integrate_harmony
   owner: ebi-gxa
   revisions:
-  - 6903bc865d63
   - c354af93f567
+  - 6903bc865d63
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_integrate_mnn
   owner: ebi-gxa
   revisions:
   - ff6decc0f432
-  - 9a2f72d7dbd2
   - 94697510d55f
+  - 9a2f72d7dbd2
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_multiplet_scrublet
@@ -113,8 +113,8 @@ tools:
 - name: scanpy_parameter_iterator
   owner: ebi-gxa
   revisions:
-  - 0387a2179f88
   - 73d43034c860
+  - 0387a2179f88
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot_embed
@@ -134,8 +134,8 @@ tools:
 - name: scanpy_plot_trajectory
   owner: ebi-gxa
   revisions:
-  - d3df472a21dc
   - cb1992d1804b
+  - d3df472a21dc
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_read_10x
@@ -155,8 +155,8 @@ tools:
 - name: scanpy_run_diffmap
   owner: ebi-gxa
   revisions:
-  - 79cc06a557b0
   - 6a6364b488db
+  - 79cc06a557b0
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_run_dpt
@@ -176,15 +176,15 @@ tools:
 - name: scanpy_run_paga
   owner: ebi-gxa
   revisions:
-  - b2768cae00a1
   - 6d4f88995e40
+  - b2768cae00a1
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_run_pca
   owner: ebi-gxa
   revisions:
-  - 4428dba93375
   - 0cf90e01d9f8
+  - 4428dba93375
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_run_tsne
@@ -197,15 +197,15 @@ tools:
 - name: scanpy_run_umap
   owner: ebi-gxa
   revisions:
+  - 767a675b5254
   - ea91cfd0444e
   - 0f98603d0116
-  - 767a675b5254
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_scale_data
   owner: ebi-gxa
   revisions:
-  - 4cc9362782b4
   - e2d0dc8a50ca
+  - 4cc9362782b4
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/hicexplorer.yml b/usegalaxy.org.au/hicexplorer.yml
index 236c04508..0ffbd3ad1 100644
--- a/usegalaxy.org.au/hicexplorer.yml
+++ b/usegalaxy.org.au/hicexplorer.yml
@@ -2,9 +2,9 @@ tools:
 - name: hicexplorer_hicbuildmatrix
   owner: bgruening
   revisions:
-  - a4c13ddcc8ee
-  - ed2cca6b5de4
   - 9edf8894a22d
+  - ed2cca6b5de4
+  - a4c13ddcc8ee
   - 29f66c353bcb
   - 921a2da49a0c
   tool_panel_section_label: HiCExplorer
@@ -12,41 +12,41 @@ tools:
 - name: hicexplorer_hicfindtads
   owner: bgruening
   revisions:
-  - 5746d61f0a91
   - d404277cc87a
-  - ec4b948dc6f0
+  - 5746d61f0a91
   - 755df866ad0c
   - 78fb5e286609
+  - ec4b948dc6f0
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergematrixbins
   owner: bgruening
   revisions:
-  - 9e357a8b2ec3
-  - 11fa44ee0603
   - 977dc15add20
-  - 4d511437b1e5
   - 03dd3c16ae4e
+  - 4d511437b1e5
+  - 11fa44ee0603
+  - 9e357a8b2ec3
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicpca
   owner: bgruening
   revisions:
+  - 0ba4f56a3613
   - 77919cc3618e
   - 3b5b54ed6392
   - c3e5e2cf12b7
-  - 0ba4f56a3613
   - 41dbf4d162a2
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotmatrix
   owner: bgruening
   revisions:
-  - 12d51d7be66f
-  - 5308ca68ef3d
+  - 7babd8a46fe0
   - 9939786dd9c9
+  - 5308ca68ef3d
+  - 12d51d7be66f
   - b63363075c2e
-  - 7babd8a46fe0
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplottads
diff --git a/usegalaxy.org.au/imaging.yml b/usegalaxy.org.au/imaging.yml
index 37c9ae6bc..1f6a27a12 100644
--- a/usegalaxy.org.au/imaging.yml
+++ b/usegalaxy.org.au/imaging.yml
@@ -2,29 +2,29 @@ tools:
 - name: 2d_auto_threshold
   owner: imgteam
   revisions:
-  - 699a5e9146b3
+  - 8bccb36e055a
+  - 3df9f0a4bf34
   - 81f0cbca04a7
   - 0c777d708acc
-  - 3df9f0a4bf34
-  - 8bccb36e055a
   - 7db4fc31dbee
+  - 699a5e9146b3
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_feature_extraction
   owner: imgteam
   revisions:
+  - 0a53256b48c6
   - 5bc8cdc17fd0
   - 5791a7f65275
   - 2436a8807ad1
-  - 0a53256b48c6
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_filter_segmentation_by_features
   owner: imgteam
   revisions:
   - e576b73a2e2f
-  - 6ad1d3cfdea1
   - 9d47aabda459
+  - 6ad1d3cfdea1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_histogram_equalization
@@ -38,9 +38,9 @@ tools:
 - name: 2d_simple_filter
   owner: imgteam
   revisions:
-  - dba87c4b32d3
-  - f70b215d155c
   - d51310ab328a
+  - f70b215d155c
+  - dba87c4b32d3
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_split_binaryimage_by_watershed
@@ -52,11 +52,11 @@ tools:
 - name: bfconvert
   owner: imgteam
   revisions:
-  - fcadded98e61
-  - b07f4839ca77
   - f3360fbeda64
-  - 10eed33aa9b2
   - 85edbb7a436b
+  - 10eed33aa9b2
+  - fcadded98e61
+  - b07f4839ca77
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: binary2labelimage
@@ -70,16 +70,16 @@ tools:
   owner: imgteam
   revisions:
   - b58447a2eed2
-  - 5bf8eb50b280
   - 664232d2a3f7
+  - 5bf8eb50b280
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_cellprofiler
   owner: bgruening
   revisions:
+  - eb6c08714244
   - 0e4dccaafef5
   - e917a2424690
-  - eb6c08714244
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_color_to_gray
@@ -92,9 +92,9 @@ tools:
 - name: cp_common
   owner: bgruening
   revisions:
-  - 6070780813d9
   - 670975e92458
   - e7273daa5ae2
+  - 6070780813d9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_convert_objects_to_image
@@ -117,8 +117,8 @@ tools:
   owner: bgruening
   revisions:
   - 11f177b1a59e
-  - f2ed92b011a9
   - bace5a93a97c
+  - f2ed92b011a9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_export_to_spreadsheet
@@ -133,8 +133,8 @@ tools:
   owner: bgruening
   revisions:
   - 3245681b2f6d
-  - 31d195bedf6d
   - ad271f78a87a
+  - 31d195bedf6d
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_identify_primary_objects
@@ -156,17 +156,17 @@ tools:
 - name: cp_mask_image
   owner: bgruening
   revisions:
+  - b178453ea8d1
   - 667a513e67e4
   - 3a05117669cf
-  - b178453ea8d1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_granularity
   owner: bgruening
   revisions:
+  - ac5bea85a391
   - 2564f461de62
   - a1a961c46d4b
-  - ac5bea85a391
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_area_occupied
@@ -180,8 +180,8 @@ tools:
 - name: cp_measure_image_intensity
   owner: bgruening
   revisions:
-  - 5499dc6f8ac1
   - 8536b1ae0254
+  - 5499dc6f8ac1
   - b64af54c5c09
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -189,39 +189,39 @@ tools:
   owner: bgruening
   revisions:
   - e972e07c7845
-  - d3890df07463
   - 6f4715b8540a
+  - d3890df07463
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_intensity
   owner: bgruening
   revisions:
   - 407925835dd9
-  - 980aed9e8fd5
   - e52c75a28c4b
+  - 980aed9e8fd5
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_size_shape
   owner: bgruening
   revisions:
-  - acf3aa487283
   - 79e10d12d90a
+  - acf3aa487283
   - d85f11570109
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_texture
   owner: bgruening
   revisions:
-  - b76841ee5560
   - 80b200ae516b
   - 035a58c7f54a
+  - b76841ee5560
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_overlay_outlines
   owner: bgruening
   revisions:
-  - 91560258e972
   - b44b081bcf37
+  - 91560258e972
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_relate_objects
@@ -263,15 +263,15 @@ tools:
 - name: image_info
   owner: imgteam
   revisions:
-  - 236ec78b2e53
-  - 7b6d9412c7f8
   - f8b4eada923c
+  - 7b6d9412c7f8
+  - 236ec78b2e53
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: overlay_images
   owner: imgteam
   revisions:
-  - 8dc02c854048
   - ca362a9bfa20
+  - 8dc02c854048
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/ivar.yml b/usegalaxy.org.au/ivar.yml
index 7d34c7f14..0ee9f16c6 100644
--- a/usegalaxy.org.au/ivar.yml
+++ b/usegalaxy.org.au/ivar.yml
@@ -2,93 +2,93 @@ tools:
 - name: ivar_consensus
   owner: iuc
   revisions:
-  - d6e72da3ec35
-  - 3a72fede57ce
-  - e4ee04da1c19
+  - f362150bef41
+  - 40737febe339
   - 3e4f434a69c6
-  - e319b5b65879
   - 78bbd17d0703
-  - 40737febe339
-  - a38934e303b9
+  - e4ee04da1c19
+  - 3a72fede57ce
   - 1069f6db0a0e
-  - f362150bef41
+  - a38934e303b9
+  - d6e72da3ec35
+  - e319b5b65879
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_filtervariants
   owner: iuc
   revisions:
-  - fcbeda41d0ac
-  - 8f8df367470d
-  - 618297d23022
   - 9537184d421f
   - 7fe36019c073
-  - c88553ec696e
-  - 2b95d5c04908
+  - 72ddd32392cd
   - f91cfb73d369
+  - fcbeda41d0ac
+  - c88553ec696e
   - 0135f1d487a0
-  - 72ddd32392cd
+  - 618297d23022
+  - 2b95d5c04908
+  - 8f8df367470d
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_getmasked
   owner: iuc
   revisions:
   - fafb3d685fa9
-  - ad0dc9f4c9e2
   - 2cf4a1cafc16
+  - ad0dc9f4c9e2
   - d7e79eb3bcb3
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_removereads
   owner: iuc
   revisions:
-  - 6a1515bb0687
-  - 9eaadf03e0df
-  - bd2a7d1316b9
   - 5dc33613c288
+  - 7f1cfa4c0e32
   - 8d36959b000d
+  - 94df24c6bc00
   - a1c2aecd7a0d
-  - 7f1cfa4c0e32
+  - 8c05afb547fa
+  - 3d18f8c3c0f6
+  - 9eaadf03e0df
+  - bd2a7d1316b9
+  - 6a1515bb0687
   - 43aac8d29685
   - ee2beb764a7b
-  - 94df24c6bc00
-  - 3d18f8c3c0f6
-  - 8c05afb547fa
-  - ee29337f905c
   - 28a6f1908fcc
+  - ee29337f905c
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_trim
   owner: iuc
   revisions:
-  - e3bb03cf207a
-  - 5671e1d3d5ee
+  - c092052ed673
   - 364f4ffec275
-  - 5d6ed46cc101
-  - cb903c9dc33d
-  - 9f978da6528a
-  - d37ede8589b2
   - bcaa0d571ce2
   - 86a20ae274fc
-  - c092052ed673
+  - 5d6ed46cc101
+  - d37ede8589b2
   - db536ad45f28
+  - cb903c9dc33d
+  - e3bb03cf207a
+  - 5671e1d3d5ee
   - a250929be21b
+  - 9f978da6528a
   - 8858fa037a15
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_variants
   owner: iuc
   revisions:
+  - c5c9f02b6167
   - 3b6a16d82c1b
-  - 49236b03e4fd
-  - 38b91a3190cd
-  - e1a015876aa9
   - 584beffa972b
-  - 12d66d0d05ac
-  - abbc8041e8ec
-  - 230b05597996
-  - f95f403841ad
-  - c5c9f02b6167
   - 194e3ceee923
+  - f95f403841ad
+  - 38b91a3190cd
   - ed28dd32141c
+  - abbc8041e8ec
+  - 12d66d0d05ac
+  - 49236b03e4fd
+  - 230b05597996
+  - e1a015876aa9
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/join_subtract_and_group.yml b/usegalaxy.org.au/join_subtract_and_group.yml
index 99491153d..f2ccfad86 100644
--- a/usegalaxy.org.au/join_subtract_and_group.yml
+++ b/usegalaxy.org.au/join_subtract_and_group.yml
@@ -2,19 +2,19 @@ tools:
 - name: datamash_reverse
   owner: iuc
   revisions:
-  - f198773344e4
   - 17e3b698dd52
-  - b8a457820315
   - 0f1724dd59d2
+  - f198773344e4
+  - b8a457820315
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: datamash_transpose
   owner: iuc
   revisions:
   - 22c2a1ac7ae3
-  - a513e3fbb4c5
   - ac092723240d
-  - ba0c40780ecf
   - 374cb875d38a
+  - a513e3fbb4c5
+  - ba0c40780ecf
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/machine_learning.yml b/usegalaxy.org.au/machine_learning.yml
index 65f22d664..7ce1beef7 100644
--- a/usegalaxy.org.au/machine_learning.yml
+++ b/usegalaxy.org.au/machine_learning.yml
@@ -18,29 +18,29 @@ tools:
 - name: keras_train_and_eval
   owner: bgruening
   revisions:
-  - 2af1346e68c9
-  - f1b9a42d6809
   - 818f9b69d8a0
-  - e1317b5502fa
+  - f1b9a42d6809
   - b6ef6d0cb6b7
+  - 2af1346e68c9
+  - e1317b5502fa
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ml_visualization_ex
   owner: bgruening
   revisions:
-  - c80db5d6fd8c
-  - 1588f9076e32
   - 947c2eacccb8
+  - 1588f9076e32
   - 05143043ca13
   - 8334dc98c48e
+  - c80db5d6fd8c
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: model_prediction
   owner: bgruening
   revisions:
-  - 29e4122c90de
-  - 1552b8cb4a94
   - 25b46af53232
+  - 1552b8cb4a94
+  - 29e4122c90de
   - 83228baae3c5
   - 9991c4ddde14
   tool_panel_section_label: Machine Learning
@@ -48,53 +48,53 @@ tools:
 - name: sklearn_ensemble
   owner: bgruening
   revisions:
-  - 841a6cc5fc58
-  - a07ab242b0b5
-  - 060ca94ac049
+  - f3dfa4bdf87e
   - 1a53edc4b438
+  - 060ca94ac049
+  - 841a6cc5fc58
   - 53616c8b0865
-  - f3dfa4bdf87e
+  - a07ab242b0b5
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_generalized_linear
   owner: bgruening
   revisions:
+  - 40f4447733b2
   - d4808d5b83da
-  - 91c4e3331208
+  - 2fc89dcd41c8
   - 927586a18553
   - dc4b5fd604a6
-  - 2fc89dcd41c8
-  - 40f4447733b2
+  - 91c4e3331208
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_searchcv
   owner: bgruening
   revisions:
+  - 36e8d6d5d01b
   - 25ab6b4e376e
   - c6ae57f774c6
-  - 36e8d6d5d01b
+  - 301e07345c93
   - e5a5ad882f1f
   - 7626ea9c2e1b
-  - 301e07345c93
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_svm_classifier
   owner: bgruening
   revisions:
-  - 80852884053f
-  - 4ed102b922cb
-  - f9639b488779
-  - 0630258dcf35
   - 02d2be90dedb
   - b7c3e9a3b954
+  - 80852884053f
+  - 0630258dcf35
+  - f9639b488779
+  - 4ed102b922cb
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_to_categorical
   owner: bgruening
   revisions:
-  - caeb57858702
   - 61634a87efc7
-  - ec69cbe34b73
   - 14180f9c831e
+  - ec69cbe34b73
+  - caeb57858702
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/mapping.yml b/usegalaxy.org.au/mapping.yml
index bf88b8575..51e2996fc 100644
--- a/usegalaxy.org.au/mapping.yml
+++ b/usegalaxy.org.au/mapping.yml
@@ -2,17 +2,17 @@ tools:
 - name: bowtie2
   owner: devteam
   revisions:
-  - 3ba8d4563129
-  - a6d65b0c67af
+  - d5ceb9f3c25b
   - 749c918495f7
+  - 937aa69e715f
   - f6877ad76b00
+  - 0d4acadabb04
   - 017aba02828d
-  - 937aa69e715f
-  - cd659e8cc5fa
+  - 3ba8d4563129
   - 17062a0decb7
-  - d5ceb9f3c25b
   - 03e9b2fbc005
-  - 0d4acadabb04
+  - cd659e8cc5fa
+  - a6d65b0c67af
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bowtie_wrappers
@@ -31,12 +31,12 @@ tools:
 - name: bwa
   owner: devteam
   revisions:
-  - e188dc7a68e6
-  - dfd8b7f78c37
   - 64f11cf59c6e
   - 53646aaaafef
-  - 2477830927ec
+  - e188dc7a68e6
+  - dfd8b7f78c37
   - 3fe632431b68
+  - 2477830927ec
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lastz_paired_reads
@@ -48,46 +48,46 @@ tools:
 - name: lastz
   owner: devteam
   revisions:
-  - 37b497aa133f
   - 3e1ea2facca6
-  - 60afcc2c1d05
-  - e7f19d6a9af8
+  - 37b497aa133f
   - 2ff111fac1d7
+  - e7f19d6a9af8
+  - 60afcc2c1d05
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minimap2
   owner: iuc
   revisions:
-  - 037c6e54df11
-  - 3f4d6399997b
+  - f54f5baedfdd
   - 6b1e195506a3
-  - 5cc34c3f440d
-  - 77b2770508f6
-  - 8c6cd2650d1f
-  - 53c0b7a1a0c3
   - 11a0d50a54e6
-  - 09b53c1d4ab1
-  - f54f5baedfdd
+  - 8c6cd2650d1f
   - b3eab4b67562
-  - c0c2d0941de8
+  - 77b2770508f6
   - be1d967337e4
+  - 5cc34c3f440d
+  - c0c2d0941de8
+  - 3f4d6399997b
+  - 53c0b7a1a0c3
+  - 037c6e54df11
+  - 09b53c1d4ab1
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rna_starsolo
   owner: iuc
   revisions:
-  - 178bdbdb6d24
-  - 42ce70172b72
-  - 9ee34ba73ebf
+  - 13022c3d3076
   - e403d27e8f24
-  - 00fbfac99d39
-  - 79b885ce78d7
-  - 45795f582ae9
-  - 5ef7ec16b04f
+  - 42ce70172b72
   - b8f5f6e87f5c
   - ec9cbd6b9a49
   - 1cd2511a396e
-  - 13022c3d3076
+  - 79b885ce78d7
+  - 9ee34ba73ebf
+  - 45795f582ae9
+  - 00fbfac99d39
+  - 178bdbdb6d24
+  - 5ef7ec16b04f
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: star_fusion
diff --git a/usegalaxy.org.au/metabolomics.yml b/usegalaxy.org.au/metabolomics.yml
index 249a4f397..52d7c5c55 100644
--- a/usegalaxy.org.au/metabolomics.yml
+++ b/usegalaxy.org.au/metabolomics.yml
@@ -82,15 +82,15 @@ tools:
 - name: matchms_filtering
   owner: recetox
   revisions:
-  - a177ac3c752c
   - 00e66c401366
+  - a177ac3c752c
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_fingerprint_similarity
   owner: recetox
   revisions:
-  - d7b517f2c5fe
   - 84af792d3a78
+  - d7b517f2c5fe
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_formatter
@@ -110,8 +110,8 @@ tools:
 - name: matchms_metadata_match
   owner: recetox
   revisions:
-  - 1d443ed476a1
   - 03bc9b7f40f6
+  - 1d443ed476a1
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_metadata_merge
@@ -123,8 +123,8 @@ tools:
 - name: matchms_networking
   owner: recetox
   revisions:
-  - 8147d93d372d
   - 1d74ae228df3
+  - 8147d93d372d
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_remove_key
@@ -148,8 +148,8 @@ tools:
 - name: matchms_spectral_similarity
   owner: recetox
   revisions:
-  - 9ff95a1a2705
   - 7627b40601f6
+  - 9ff95a1a2705
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: matchms_split
@@ -224,72 +224,72 @@ tools:
 - name: ramclustr
   owner: recetox
   revisions:
-  - 9b716db0a786
   - da7722f665f4
+  - 9b716db0a786
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_align_features
   owner: recetox
   revisions:
-  - 7b42ee54d757
-  - c53a97599181
   - 79ad928a0dae
+  - c53a97599181
+  - 7b42ee54d757
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_compute_clusters
   owner: recetox
   revisions:
-  - 18ec7635bac6
-  - f3a18e020cdd
   - 149b9cc7499b
+  - f3a18e020cdd
+  - 18ec7635bac6
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_compute_template
   owner: recetox
   revisions:
-  - 481d769e2f7a
   - 134be5abb208
   - dfebc82ba1f0
+  - 481d769e2f7a
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_correct_time
   owner: recetox
   revisions:
-  - 9064aecc78a7
-  - 51332c2520c7
   - 02c772a49998
+  - 51332c2520c7
+  - 9064aecc78a7
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_generate_feature_table
   owner: recetox
   revisions:
-  - e7305ba0dd38
   - b3413f335327
+  - e7305ba0dd38
   - b341cfd4baf8
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_merge_known_table
   owner: recetox
   revisions:
-  - cf061712a184
   - 17a48d0a80f4
+  - cf061712a184
   - dd7bbc2b99d1
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_recover_weaker_signals
   owner: recetox
   revisions:
-  - d7f5878a98c3
   - 24278c6b6d1c
+  - d7f5878a98c3
   - 99d118321d5f
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_aplcms_remove_noise
   owner: recetox
   revisions:
+  - d90187b0f247
   - ffbabefbd2e2
   - ea0758b41473
-  - d90187b0f247
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: recetox_msfinder
@@ -301,8 +301,8 @@ tools:
 - name: recetox_xmsannotator_advanced
   owner: recetox
   revisions:
-  - 6b5dec818827
   - 2c6fa447f6a0
+  - 6b5dec818827
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rename_annotated_feature
@@ -320,8 +320,8 @@ tools:
 - name: rmassbank
   owner: recetox
   revisions:
-  - 0b28816c1c2c
   - 5a6bb93ec656
+  - 0b28816c1c2c
   tool_panel_section_label: Metabolomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spec2vec_similarity
diff --git a/usegalaxy.org.au/metagenomic_analysis.yml b/usegalaxy.org.au/metagenomic_analysis.yml
index 81e8e76e5..4809a9f5e 100644
--- a/usegalaxy.org.au/metagenomic_analysis.yml
+++ b/usegalaxy.org.au/metagenomic_analysis.yml
@@ -9,16 +9,16 @@ tools:
 - name: cat_bins
   owner: iuc
   revisions:
-  - 18676df0cb3a
   - 0e63d03c8790
   - 0094893f5001
+  - 18676df0cb3a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cat_summarise
   owner: iuc
   revisions:
-  - 7f1aaa1932d8
   - a8216def322b
+  - 7f1aaa1932d8
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: checkm_analyze
@@ -90,120 +90,120 @@ tools:
 - name: dada2_assigntaxonomyaddspecies
   owner: iuc
   revisions:
-  - 65db807336bc
   - 5b5a7af9fbb4
+  - 63f86089423e
+  - 65db807336bc
   - 7c2100246a2f
   - 76d3d2b10738
-  - 63f86089423e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_dada
   owner: iuc
   revisions:
   - 1c35dadbe76f
-  - 84fd33a60b35
-  - 96336c6a2bb7
   - 00f5005840fa
+  - 84fd33a60b35
   - 18a502a9d287
+  - 96336c6a2bb7
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_filterandtrim
   owner: iuc
   revisions:
-  - a9f4a217dcd6
-  - addaf9d22850
   - e8fba04706d3
+  - addaf9d22850
   - 34e55239e68b
   - f732237754fc
+  - a9f4a217dcd6
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_learnerrors
   owner: iuc
   revisions:
-  - 5fe3edf19b9c
-  - 0776d824d896
-  - 8c202e741d68
   - 75403243703a
+  - 8c202e741d68
+  - 5fe3edf19b9c
   - 04c15826a0b8
+  - 0776d824d896
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_makesequencetable
   owner: iuc
   revisions:
-  - 75c8945b0da2
-  - e96bbb9e24ea
   - 1c9b3bcd4261
-  - 43c99742158b
   - 8470de786d47
+  - e96bbb9e24ea
+  - 75c8945b0da2
+  - 43c99742158b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_mergepairs
   owner: iuc
   revisions:
   - 84743da21318
-  - 306a40d4bb8f
-  - 1d75bd0595e2
-  - 35176674168c
   - 5c865a382933
+  - 35176674168c
+  - 1d75bd0595e2
+  - 306a40d4bb8f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotcomplexity
   owner: iuc
   revisions:
+  - 8daf4564ccda
   - 32c9ea835770
   - 555ccac8a4c5
-  - ac72310b038a
-  - 8daf4564ccda
   - 78faebd0879c
+  - ac72310b038a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotqualityprofile
   owner: iuc
   revisions:
-  - d60df8727f59
+  - a58e4a43f49c
   - 7b8cb2b02978
+  - d60df8727f59
   - cae017b76acb
   - f947b4bb5107
-  - a58e4a43f49c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_removebimeradenovo
   owner: iuc
   revisions:
-  - 1bc3657cd694
-  - 073608a50ac3
   - 04144473e59e
+  - 1bc3657cd694
   - 7f3b59dee073
+  - 073608a50ac3
   - 7136e9ab70db
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_seqcounts
   owner: iuc
   revisions:
-  - 9058d8943303
-  - a7817705348e
   - 0a1224c4b781
-  - d943081510da
+  - 9058d8943303
   - 19299bb1c6af
+  - d943081510da
+  - a7817705348e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasttree
   owner: iuc
   revisions:
-  - c7e73acfa3eb
   - e005e659ae21
+  - c7e73acfa3eb
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gtdbtk_classify_wf
   owner: iuc
   revisions:
+  - b907a3c0434f
   - dbf1798c0dcc
+  - 4d9445dff47b
   - f8f56dd6449f
-  - 5c7ba3d85a01
-  - b907a3c0434f
   - c4db8c4de66f
-  - 4d9445dff47b
   - a68b985913ab
+  - 5c7ba3d85a01
   - 65d52c693b8e
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -217,9 +217,9 @@ tools:
 - name: humann2_genefamilies_genus_level
   owner: iuc
   revisions:
-  - 6d364c65c946
-  - 6c84982ee6f7
   - 654548ae1357
+  - 6c84982ee6f7
+  - 6d364c65c946
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_join_tables
@@ -231,24 +231,24 @@ tools:
 - name: humann2_regroup_table
   owner: iuc
   revisions:
+  - e66ab198ec15
   - bd7a9c6efb10
   - 6aad8ca3918b
-  - e66ab198ec15
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_renorm_table
   owner: iuc
   revisions:
+  - b084117133af
   - c6676a890f50
   - d77397f09da1
-  - b084117133af
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_unpack_pathways
   owner: iuc
   revisions:
-  - 7f208f1eb64f
   - 9704f1a3b32d
+  - 7f208f1eb64f
   - cad93abecac9
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -267,8 +267,8 @@ tools:
 - name: humann_barplot
   owner: iuc
   revisions:
-  - 523ae8314ef5
   - 5fea25ee6275
+  - 523ae8314ef5
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_join_tables
@@ -281,40 +281,40 @@ tools:
 - name: humann_reduce_table
   owner: iuc
   revisions:
-  - 6552df6efe6b
   - 60749924ad62
+  - 6552df6efe6b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_regroup_table
   owner: iuc
   revisions:
-  - 79706f10d680
-  - 8237a0f225db
+  - e88b731dad59
   - 31c6d107e7a5
   - c409a495841f
-  - e88b731dad59
+  - 79706f10d680
+  - 8237a0f225db
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rename_table
   owner: iuc
   revisions:
-  - 714d5a28cc5c
   - 094ad9c068af
+  - 714d5a28cc5c
   - aabf8cfb8fef
-  - 71ea608ddfa3
   - 172920f67a84
   - d24841f5c3d2
+  - 71ea608ddfa3
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_renorm_table
   owner: iuc
   revisions:
   - d7e9a3c41657
+  - 4137b492233e
   - 12fb63b5f63f
   - a293a742194f
-  - a4d7148ccee4
-  - 4137b492233e
   - 2bdd84912a2b
+  - a4d7148ccee4
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rna_dna_norm
@@ -326,20 +326,20 @@ tools:
 - name: humann_split_stratified_table
   owner: iuc
   revisions:
-  - a92c06a3afa7
-  - 64bc7acc22a9
+  - 97f7bb0851e7
   - 75bedfb2078b
   - cf87759761eb
-  - 97f7bb0851e7
-  - 6fcb8ac37a3e
+  - a92c06a3afa7
   - e2c71b852aba
+  - 6fcb8ac37a3e
+  - 64bc7acc22a9
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_split_table
   owner: iuc
   revisions:
-  - e9d12c223a80
   - 81c5dd1c777f
+  - e9d12c223a80
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_strain_profiler
@@ -351,22 +351,22 @@ tools:
 - name: humann_unpack_pathways
   owner: iuc
   revisions:
-  - 2d35528d2141
   - 4033827c76b8
   - c82508e76ad1
   - 5e5a999ffaa9
   - 4e5e73d03f0d
+  - 2d35528d2141
   - 080ea153677c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann
   owner: iuc
   revisions:
-  - c2803012bbb3
-  - 6b7622dda516
-  - 95bf7479d53c
   - fc6c328c292f
+  - 6b7622dda516
   - 2cd76b089570
+  - c2803012bbb3
+  - 95bf7479d53c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jellyfish
@@ -386,8 +386,8 @@ tools:
 - name: khmer_abundance_distribution
   owner: iuc
   revisions:
-  - e699e2747356
   - 7624945cacd3
+  - e699e2747356
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_count_median
@@ -400,15 +400,15 @@ tools:
 - name: khmer_extract_partitions
   owner: iuc
   revisions:
-  - adb3dd5a899f
   - 1061711538c6
+  - adb3dd5a899f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_filter_abundance
   owner: iuc
   revisions:
-  - b86562b4f3fd
   - 29a4d6e2ae9c
+  - b86562b4f3fd
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_filter_below_abundance_cutoff
@@ -421,8 +421,8 @@ tools:
 - name: khmer_normalize_by_median
   owner: iuc
   revisions:
-  - 4d23ab83ea29
   - b1fe2ef3d244
+  - 4d23ab83ea29
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: khmer_partition
@@ -441,17 +441,17 @@ tools:
 - name: kraken2
   owner: iuc
   revisions:
-  - cdee7158adf3
   - 328c607150ff
   - 20e2f64aa1fe
+  - cdee7158adf3
   - 4a9da2b6c2e3
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken2tax
   owner: devteam
   revisions:
-  - f03c7ba8d8bc
   - 50bd98b3ae5a
+  - f03c7ba8d8bc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_biom
@@ -463,8 +463,8 @@ tools:
 - name: kraken_filter
   owner: devteam
   revisions:
-  - 67236d921e83
   - 5bee9adae474
+  - 67236d921e83
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_report
@@ -490,8 +490,8 @@ tools:
 - name: kraken
   owner: devteam
   revisions:
-  - 766d5f63b0f4
   - 8ba2174315aa
+  - 766d5f63b0f4
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krakentools_alpha_diversity
@@ -522,8 +522,8 @@ tools:
 - name: krakentools_kreport2krona
   owner: iuc
   revisions:
-  - 88d274322340
   - 2deaada69b14
+  - 88d274322340
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krakentools_kreport2mpa
@@ -559,22 +559,22 @@ tools:
 - name: merge_metaphlan_tables
   owner: iuc
   revisions:
-  - 2cff76cf35c6
   - 7f5d7b0e9884
-  - 327d9f4cc95f
   - e073891b2afc
-  - 3cc4a60615c0
   - 27250f92a01a
-  - 4fd3b5d8706b
+  - 327d9f4cc95f
   - 0270541aaf46
+  - 3cc4a60615c0
+  - 2cff76cf35c6
+  - 4fd3b5d8706b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metabat2
   owner: iuc
   revisions:
-  - 708abf08a626
   - eb50e7eca3dc
   - 76bc4efa1aeb
+  - 708abf08a626
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metadegalaxy_pear_stats
@@ -647,19 +647,19 @@ tools:
 - name: metaphlan
   owner: iuc
   revisions:
-  - a16313517e55
-  - ec368db926f4
-  - a92a632c4d9b
   - 6dee4abadccb
-  - 1a037928504c
-  - 1a6cdf55390f
+  - a92a632c4d9b
+  - ec368db926f4
   - b89b0765695d
   - fd69c607b43f
-  - 2131d7dca455
+  - a16313517e55
   - 289b3807e80c
+  - ef65b083bd0c
   - 740fd2d16a28
+  - 1a6cdf55390f
+  - 1a037928504c
+  - 2131d7dca455
   - ff8f55893e7d
-  - ef65b083bd0c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metawrapmg_binning
@@ -690,15 +690,15 @@ tools:
 - name: picrust2_add_descriptions
   owner: iuc
   revisions:
-  - 6034c3f3ecf0
   - 2f47a294ef49
+  - 6034c3f3ecf0
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_hsp
   owner: iuc
   revisions:
-  - 6eafc1e01a8c
   - 3b133b8d578a
+  - 6eafc1e01a8c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_metagenome_pipeline
@@ -711,29 +711,29 @@ tools:
 - name: picrust2_pathway_pipeline
   owner: iuc
   revisions:
-  - f53beb324696
   - 6077821e8ae7
+  - f53beb324696
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_pipeline
   owner: iuc
   revisions:
-  - d6bb2e3febda
   - 540aedfc81c7
+  - d6bb2e3febda
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_place_seqs
   owner: iuc
   revisions:
-  - 680fb3eb574c
   - 73b56418e7f4
+  - 680fb3eb574c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust2_shuffle_predictions
   owner: iuc
   revisions:
-  - 677f3c8db525
   - 881f2faa5fe7
+  - 677f3c8db525
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_categorize
@@ -764,8 +764,8 @@ tools:
 - name: picrust_normalize_by_copy_number
   owner: iuc
   revisions:
-  - 65e5f9caefcc
   - 2e62e32d4f33
+  - 65e5f9caefcc
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_predict_metagenomes
@@ -797,19 +797,19 @@ tools:
   owner: nml
   revisions:
   - aeaa20b96ef2
-  - 4d83eccf5f81
+  - 3b22de20bd4b
   - be818ae858e4
+  - 4d83eccf5f81
   - 2fd4d4c9c5c2
-  - 4b9a8031ab74
-  - 3b22de20bd4b
   - 141afacabcfa
+  - 4b9a8031ab74
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vsearch
   owner: iuc
   revisions:
-  - 9495df9dd6ef
   - 576963db5f1b
+  - 9495df9dd6ef
   - b3c7199d8786
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/mothur.yml b/usegalaxy.org.au/mothur.yml
index 193493f23..2f857a822 100644
--- a/usegalaxy.org.au/mothur.yml
+++ b/usegalaxy.org.au/mothur.yml
@@ -652,8 +652,8 @@ tools:
 - name: mothur_screen_seqs
   owner: iuc
   revisions:
-  - f4d7d5755f01
   - 63b74bfc8052
+  - f4d7d5755f01
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_sens_spec
@@ -707,8 +707,8 @@ tools:
 - name: mothur_sub_sample
   owner: iuc
   revisions:
-  - 67cb43432196
   - e866e31f6da3
+  - 67cb43432196
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_qual
diff --git a/usegalaxy.org.au/multiple_alignments.yml b/usegalaxy.org.au/multiple_alignments.yml
index d7147ff20..f0a8910d8 100644
--- a/usegalaxy.org.au/multiple_alignments.yml
+++ b/usegalaxy.org.au/multiple_alignments.yml
@@ -2,39 +2,39 @@ tools:
 - name: cactus_cactus
   owner: galaxy-australia
   revisions:
-  - a74dbfee5a86
+  - 9baa871cb1d1
+  - cd07731e4434
   - 8b67dd48fec1
   - 098506c54016
-  - 6ae5a7b5a0a2
-  - 94b8c6013083
-  - 48c13389050d
   - 80f03df2e2ce
-  - cd07731e4434
-  - 9eeb13a92d79
   - bdfbaf0c10aa
-  - 9baa871cb1d1
+  - 48c13389050d
   - 2263989660f5
   - 9422c5a87ee2
+  - a74dbfee5a86
+  - 6ae5a7b5a0a2
+  - 94b8c6013083
+  - 9eeb13a92d79
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cactus_export
   owner: galaxy-australia
   revisions:
-  - bc3831dd65c1
-  - fc2e49f91e52
-  - d7ce0ec78e51
-  - 5abf2c2249aa
+  - c44f824c051a
+  - '764845535798'
   - f14193ec1f50
-  - 4a60927aaca5
-  - c18157c68134
+  - d7ce0ec78e51
+  - fc2e49f91e52
+  - aaa0d6a8b808
+  - be78f13134e2
+  - d390fe1567dc
   - f0af8936ed41
+  - 4a60927aaca5
   - 3ff17bad4006
-  - aaa0d6a8b808
-  - '764845535798'
+  - c18157c68134
   - 2e093badc689
-  - c44f824c051a
-  - d390fe1567dc
-  - be78f13134e2
+  - 5abf2c2249aa
+  - bc3831dd65c1
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cdhit
@@ -46,8 +46,8 @@ tools:
 - name: chromeister
   owner: iuc
   revisions:
-  - e483be1014b6
   - b768cc4cca40
+  - e483be1014b6
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: clustalw
@@ -67,54 +67,54 @@ tools:
 - name: mafft
   owner: rnateam
   revisions:
-  - bf28a8cff401
+  - a65296ffb4a0
   - f1a5908ea2cb
-  - 8e649f27aa0d
-  - f0d493f8f84f
-  - 15974dd17515
+  - bf28a8cff401
   - 6f28e90db932
+  - 15974dd17515
   - c5908940967d
-  - a65296ffb4a0
+  - f0d493f8f84f
+  - 8e649f27aa0d
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_delta_filter
   owner: iuc
   revisions:
-  - b3acbb3a6af0
-  - e8fdceffea4c
   - fbca557a4847
+  - e8fdceffea4c
+  - b3acbb3a6af0
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_dnadiff
   owner: iuc
   revisions:
-  - 5561a1193611
   - 60698466facd
   - c9685bc0407c
+  - 5561a1193611
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummer
   owner: iuc
   revisions:
   - bcd65de9725b
-  - 57f042937ba7
   - 48823c9635a4
+  - 57f042937ba7
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummerplot
   owner: iuc
   revisions:
-  - ebe3b0f84de9
-  - fb43e8887350
   - 4fc0cb2ac8ae
+  - fb43e8887350
+  - ebe3b0f84de9
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_nucmer
   owner: iuc
   revisions:
+  - 7cd7a55a678d
   - e18267f90096
   - 636b049e6141
-  - 7cd7a55a678d
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_show_coords
diff --git a/usegalaxy.org.au/nanopore.yml b/usegalaxy.org.au/nanopore.yml
index 4e38b9220..c5a745f2b 100644
--- a/usegalaxy.org.au/nanopore.yml
+++ b/usegalaxy.org.au/nanopore.yml
@@ -9,16 +9,16 @@ tools:
   owner: galaxy-australia
   revisions:
   - 28928576e1ea
-  - 18a8d140ec6f
   - 7c47b3c9e493
+  - 18a8d140ec6f
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dorado
   owner: galaxy-australia
   revisions:
+  - 63d8ecfcfab1
   - fc5b6491cf78
   - 99c9427219d3
-  - 63d8ecfcfab1
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_consensus_pipeline
@@ -26,8 +26,8 @@ tools:
   revisions:
   - 0e9e7fcdd543
   - 72b5e9dda577
-  - fc8804320156
   - 79e9a869f40e
+  - fc8804320156
   - a7228a7ea146
   - cb34f00cc10f
   tool_panel_section_label: Nanopore
@@ -35,10 +35,10 @@ tools:
 - name: medaka_consensus
   owner: iuc
   revisions:
-  - db25ec99c3ea
-  - d6cddc06aeae
   - fa11aa8103b2
   - 18505fe2bdb1
+  - d6cddc06aeae
+  - db25ec99c3ea
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_variant_pipeline
@@ -50,22 +50,22 @@ tools:
 - name: medaka_variant
   owner: iuc
   revisions:
-  - 2bf63b38ee9b
+  - ec699520444c
   - 43815fa60f3a
+  - 222669c4afb6
   - 19f3b583a9b3
-  - 0f5f4a208660
   - eb746fa6f514
   - edf6d4003fad
+  - 0f5f4a208660
   - cc36773a3681
-  - 222669c4afb6
-  - ec699520444c
+  - 2bf63b38ee9b
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanocompore_sampcomp
   owner: iuc
   revisions:
-  - b833eff63b10
   - c0fb573c1e8d
+  - b833eff63b10
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanofilt
@@ -77,60 +77,60 @@ tools:
 - name: nanoplot
   owner: iuc
   revisions:
-  - 645159bcee2d
   - 0f1c34698076
-  - a02b8b3f5a0c
-  - edbb6c5028f5
-  - a3c4fe6f49ab
   - a38bdcec9e4c
   - 7b379e98b9a9
+  - a3c4fe6f49ab
+  - edbb6c5028f5
+  - 645159bcee2d
+  - a02b8b3f5a0c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_eventalign
   owner: bgruening
   revisions:
   - d219b6d8158a
-  - 3b6f94fc7e1d
   - 85a394edc247
+  - 3b6f94fc7e1d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_methylation
   owner: bgruening
   revisions:
-  - a8d4be409446
   - be95355fef8d
   - 90a922f32523
+  - a8d4be409446
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_polya
   owner: bgruening
   revisions:
-  - 4857d5bcce52
-  - 449e9aeded2d
   - d376944466bf
+  - 449e9aeded2d
+  - 4857d5bcce52
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_variants
   owner: bgruening
   revisions:
-  - a3afc5f0a96c
   - de5b3d8f5b90
   - bec636361cfd
+  - a3afc5f0a96c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: porechop
   owner: iuc
   revisions:
+  - 93d623d9979c
   - 543cbeef3949
   - 5f76b20953e5
-  - 93d623d9979c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_events
   owner: iuc
   revisions:
-  - 1d835c691480
   - daf8518d243a
+  - 1d835c691480
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_extract
@@ -168,15 +168,15 @@ tools:
 - name: poretools_qualpos
   owner: iuc
   revisions:
-  - 626b6c2be5c2
   - 2e22ebec211a
+  - 626b6c2be5c2
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_squiggle
   owner: iuc
   revisions:
-  - ce8af9373061
   - 26e6c9362b7b
+  - ce8af9373061
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_stats
@@ -206,8 +206,8 @@ tools:
 - name: poretools_yield_plot
   owner: iuc
   revisions:
-  - c5c5a3e84989
   - 64a83664b814
+  - c5c5a3e84989
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pycoqc
diff --git a/usegalaxy.org.au/none.yml b/usegalaxy.org.au/none.yml
index 21c2a56bf..0e96ce0cb 100644
--- a/usegalaxy.org.au/none.yml
+++ b/usegalaxy.org.au/none.yml
@@ -2,8 +2,8 @@ tools:
 - name: amrfinderplus_data_manager_build
   owner: iuc
   revisions:
-  - a5921c09b7b7
   - 592ef3959907
+  - a5921c09b7b7
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blast_datatypes
@@ -27,11 +27,11 @@ tools:
 - name: data_manager_bakta
   owner: iuc
   revisions:
-  - d74850cf4e42
+  - adfd6bf710bd
   - baceff842902
   - 97b1b5ad1cda
+  - d74850cf4e42
   - 3e73c97f025d
-  - adfd6bf710bd
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bowtie2_index_builder
@@ -51,12 +51,12 @@ tools:
 - name: data_manager_build_kraken2_database
   owner: iuc
   revisions:
+  - 2f27f3b86827
   - 13851aefa67a
+  - 19b6a2f0dbe2
   - 1e34d2e3d285
   - e4b4837f06f5
   - ed1518ce2237
-  - 2f27f3b86827
-  - 19b6a2f0dbe2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwa_mem_index_builder
@@ -111,8 +111,8 @@ tools:
 - name: data_manager_fetch_genome_dbkeys_all_fasta
   owner: devteam
   revisions:
-  - b1bc53e9bbc5
   - 4d3eff1bc421
+  - b1bc53e9bbc5
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_funannotate
@@ -124,17 +124,17 @@ tools:
 - name: data_manager_gatk_picard_index_builder
   owner: devteam
   revisions:
-  - 9a40272f56d0
   - 6287d0ee459e
+  - 9a40272f56d0
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gemini_database_downloader
   owner: iuc
   revisions:
   - 27a6a256cd23
-  - 52b6a4d98009
-  - b4b2b284230a
   - 172815da3d41
+  - b4b2b284230a
+  - 52b6a4d98009
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gtdbtk_database_installer
@@ -159,16 +159,16 @@ tools:
 - name: data_manager_humann_database_downloader
   owner: iuc
   revisions:
+  - 87febc68b45b
   - 19bbd19b74b3
   - fea85c467896
-  - 87febc68b45b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_interproscan
   owner: iuc
   revisions:
-  - 0df47f8552f6
   - 7776cb18fdf8
+  - 0df47f8552f6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_kallisto_index_builder
@@ -193,26 +193,26 @@ tools:
 - name: data_manager_metaphlan_database_downloader
   owner: iuc
   revisions:
-  - 4ba60cb14cb0
   - 0cb27ea69dc1
-  - d8dc037e3c13
-  - 5fe20c915fa6
+  - 4ba60cb14cb0
   - 2c61c30a57e7
+  - d8dc037e3c13
   - 9c43baa60906
+  - 5fe20c915fa6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mitos
   owner: iuc
   revisions:
-  - d9339bb8127e
   - 14785f8a3725
+  - d9339bb8127e
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mothur_toolsuite
   owner: iuc
   revisions:
-  - 9d09724f2bf1
   - 0db22932bc39
+  - 9d09724f2bf1
   - aec831b54a5b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -220,8 +220,8 @@ tools:
   owner: iuc
   revisions:
   - 29c738066906
-  - df30a2f1db55
   - ed7a967cb11b
+  - df30a2f1db55
   - 6e24e79d3d69
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -240,16 +240,16 @@ tools:
 - name: data_manager_sam_fasta_index_builder
   owner: devteam
   revisions:
+  - ad90c2da4f38
   - 3e4d45aca422
   - 1865e693d8b2
-  - ad90c2da4f38
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_snpeff
   owner: iuc
   revisions:
-  - def511e8e005
   - d107d20dc6bd
+  - def511e8e005
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_sortmerna_database_downloader
@@ -262,16 +262,16 @@ tools:
   owner: iuc
   revisions:
   - 64deddb6a8ec
-  - d63c1442407f
   - c520a52b5174
+  - d63c1442407f
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_twobit_builder
   owner: devteam
   revisions:
-  - 94a50db37d1a
-  - 9946bc39c834
   - 625fd9476402
+  - 9946bc39c834
+  - 94a50db37d1a
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_vep_cache_downloader
@@ -796,10 +796,10 @@ tools:
   owner: iuc
   revisions:
   - 9a22227bb6d0
+  - ba7b0f11e470
   - 58a870ef434c
-  - f77f7a7f3b83
   - ab5b7f6b7198
-  - ba7b0f11e470
+  - f77f7a7f3b83
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_ampliconclip
diff --git a/usegalaxy.org.au/phylogenetics.yml b/usegalaxy.org.au/phylogenetics.yml
index b729d9474..3571ac4a7 100644
--- a/usegalaxy.org.au/phylogenetics.yml
+++ b/usegalaxy.org.au/phylogenetics.yml
@@ -20,8 +20,8 @@ tools:
 - name: gubbins
   owner: iuc
   revisions:
-  - 637ec5d5368c
   - 96e6283e4745
+  - 637ec5d5368c
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hybpiper
@@ -33,66 +33,67 @@ tools:
 - name: hyphy_absrel
   owner: iuc
   revisions:
-  - d7c7ef3353fe
-  - c78f3d7dd1db
+  - 6a457678efcb
   - b89cac5156ec
-  - f73435dc282b
+  - c78f3d7dd1db
   - 3b8b5bde0bd9
-  - 81e66674859e
-  - f04a1264e2a2
-  - 6a457678efcb
-  - 8834daeb9892
-  - d033ffc1c161
-  - 5a7c56a5cc08
   - cce7b18495e4
-  - a6619171428e
-  - 3f59ebfbfe3d
   - 107d3ba7024a
+  - 8834daeb9892
   - 26de3a7b1cb9
+  - d7c7ef3353fe
+  - 3f59ebfbfe3d
+  - f04a1264e2a2
+  - a6619171428e
+  - 5a7c56a5cc08
+  - d033ffc1c161
   - '841557158611'
+  - 81e66674859e
+  - f73435dc282b
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hyphy_gard
   owner: iuc
   revisions:
-  - 5b777002c2de
-  - df47d4845b62
-  - aa8cc71438cf
-  - 6a726db04d4b
+  - 6223845127ea
   - 5fcd1ece3a6e
+  - 3b96e92e8ec3
+  - 659517798cc4
+  - 02b8758214b0
+  - aa8cc71438cf
+  - df47d4845b62
+  - 5b777002c2de
   - 7a2092844346
-  - 6283babe736e
+  - b0af57c1a968
   - e75442c7f4da
   - 4755f52427c4
-  - 3b96e92e8ec3
-  - 6223845127ea
-  - 659517798cc4
   - a185b079b095
   - 88c4aa435ded
-  - b0af57c1a968
-  - 02b8758214b0
+  - 6283babe736e
+  - 6a726db04d4b
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: iqtree
   owner: iuc
   revisions:
-  - 0878b7fd5260
-  - 111bd54f6bc4
-  - 70acec670c30
-  - c1d53e95327f
-  - 24d024316465
   - d1c340a5664b
+  - 24d024316465
   - b8476e82ac20
   - f97743d52b87
+  - 70acec670c30
+  - 111bd54f6bc4
+  - 0878b7fd5260
+  - f87ac61981f0
+  - c1d53e95327f
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nextclade
   owner: iuc
   revisions:
+  - daddf188c13f
   - 4f6349228462
-  - 9e10ba792be2
   - feb40665d7cd
-  - daddf188c13f
+  - 9e10ba792be2
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: orthofinder_onlygroups
@@ -104,26 +105,26 @@ tools:
 - name: pangolin
   owner: iuc
   revisions:
-  - ca0d8cf80567
-  - abf6dbe8c9d7
-  - 5f8727ff21e7
-  - 3a43c3982401
-  - 9d61d3fa046c
-  - 36912871ccdc
-  - 81804a978fc0
+  - 2fa9d4f1b48f
   - b7e297c2ede6
-  - 7bb8726be37c
+  - 81804a978fc0
+  - ca0d8cf80567
   - 437e28791761
-  - 2fa9d4f1b48f
-  - 42a174224817
   - 14ae456b8cc5
+  - 9d61d3fa046c
+  - 5f8727ff21e7
+  - a2099fb98cdb
+  - abf6dbe8c9d7
+  - 36912871ccdc
+  - 8ad84c5753ea
   - 03ed9524dcd1
-  - ca337cce3888
+  - 7bb8726be37c
   - 2f1019071464
-  - b6abccb1f25b
+  - 3a43c3982401
   - 83a69484cb87
-  - a2099fb98cdb
-  - 8ad84c5753ea
+  - ca337cce3888
+  - b6abccb1f25b
+  - 42a174224817
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyml
@@ -142,23 +143,23 @@ tools:
 - name: raxml
   owner: iuc
   revisions:
-  - 29ff6a849eac
-  - a4b71be30c3c
-  - ea30d3089354
   - ba29b5e2a4be
   - 73a469f7dc96
   - b1e68bbe4cef
+  - ea30d3089354
+  - 29ff6a849eac
+  - a4b71be30c3c
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: roary
   owner: iuc
   revisions:
-  - f1ccc8a6eb05
-  - 15ac71df11a0
+  - 9b2b122d0415
   - e88a7de55d6e
-  - 809e42326fc2
+  - 15ac71df11a0
   - dbe2b2204555
+  - 809e42326fc2
+  - f1ccc8a6eb05
   - 91887494eb97
-  - 9b2b122d0415
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/picard.yml b/usegalaxy.org.au/picard.yml
index f12b1c0ca..fba6ef11c 100644
--- a/usegalaxy.org.au/picard.yml
+++ b/usegalaxy.org.au/picard.yml
@@ -2,14 +2,14 @@ tools:
 - name: picard
   owner: devteam
   revisions:
-  - b502c227b5e6
-  - 7d34178f2812
-  - f9242e01365a
-  - f6ced08779c4
   - fc288950c3b7
-  - 3f254c5ced1d
-  - 881d7645d1bf
   - 1aac2a13842a
+  - 881d7645d1bf
+  - f9242e01365a
+  - b502c227b5e6
+  - 3f254c5ced1d
   - a1f0b3f4b781
+  - 7d34178f2812
+  - f6ced08779c4
   tool_panel_section_label: Picard
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/proteomic_ai.yml b/usegalaxy.org.au/proteomic_ai.yml
index 62cee8ed2..5dd1825b5 100644
--- a/usegalaxy.org.au/proteomic_ai.yml
+++ b/usegalaxy.org.au/proteomic_ai.yml
@@ -2,16 +2,16 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
-  - e4a053d67e24
-  - 5b85006245f3
-  - 3bd420ec162d
-  - c0e71cb2bd1b
-  - a58f7eb0df2c
-  - d00e15139065
-  - ca90d17ff51b
   - eb085b3dbaf8
-  - 6ab1a261520a
+  - d00e15139065
+  - c0e71cb2bd1b
+  - 3bd420ec162d
   - 7fbec959cf2b
+  - 6ab1a261520a
   - 2f7702fd0a4c
+  - 5b85006245f3
+  - ca90d17ff51b
+  - a58f7eb0df2c
+  - e4a053d67e24
   tool_panel_section_label: Proteomic AI
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/proteomics.yml b/usegalaxy.org.au/proteomics.yml
index 436495306..e4e2ce16b 100644
--- a/usegalaxy.org.au/proteomics.yml
+++ b/usegalaxy.org.au/proteomics.yml
@@ -2,11 +2,11 @@ tools:
 - name: cardinal_classification
   owner: galaxyp
   revisions:
-  - b574b84afc4d
   - 0a18ac48ac53
   - b18329a8ac14
-  - 4c177985028a
   - 277dc652246e
+  - 4c177985028a
+  - b574b84afc4d
   - f28ad96b76dc
   - ece627528a78
   tool_panel_section_label: Proteomics
@@ -14,10 +14,10 @@ tools:
 - name: cardinal_combine
   owner: galaxyp
   revisions:
-  - bf06d196e23d
   - e988563cc6e5
   - e215f71d7983
   - 525f201b86c1
+  - bf06d196e23d
   - b41107d8fe89
   - a9a28e46d54a
   tool_panel_section_label: Proteomics
@@ -25,29 +25,29 @@ tools:
 - name: cardinal_data_exporter
   owner: galaxyp
   revisions:
-  - 8da3511c9467
   - 4fbffddde8cd
-  - 56da27be956a
   - bb6397b94018
+  - 8da3511c9467
+  - 56da27be956a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_filtering
   owner: galaxyp
   revisions:
-  - f23d67e28cc8
+  - 528fb09022be
   - b8c79e70516d
-  - a8157342d9a3
+  - f23d67e28cc8
   - 890845926d4b
-  - 528fb09022be
+  - a8157342d9a3
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_mz_images
   owner: galaxyp
   revisions:
-  - 59e85306eae5
   - 80600735685d
-  - ae304a72db7b
   - a95a82eb4d50
+  - 59e85306eae5
+  - ae304a72db7b
   - 25b83cbd596a
   - a69865da6f80
   tool_panel_section_label: Proteomics
@@ -55,12 +55,12 @@ tools:
 - name: cardinal_preprocessing
   owner: galaxyp
   revisions:
-  - 798da6bdff3d
   - f1897eb07081
-  - 83aac7741200
-  - e0669b1854b1
   - 611d80c0e29d
+  - 798da6bdff3d
   - ed9ed1e6cca2
+  - e0669b1854b1
+  - 83aac7741200
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_quality_report
@@ -75,21 +75,21 @@ tools:
 - name: cardinal_segmentations
   owner: galaxyp
   revisions:
-  - df2187f9013b
   - cc430977c8ff
   - 91f0f5922011
   - 82f6c2f4332d
+  - df2187f9013b
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_spectra_plots
   owner: galaxyp
   revisions:
+  - 10566783d718
+  - c5aa9fca18c6
   - 043f9c91f686
-  - d2483487e077
   - ba92b59cd529
   - 1693b2126f30
-  - 10566783d718
-  - c5aa9fca18c6
+  - d2483487e077
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: custom_pro_db
@@ -108,9 +108,9 @@ tools:
   owner: galaxyp
   revisions:
   - 9fa3dbf06f17
+  - bf0728e000cd
   - ff8c9e0e8a7b
   - ae4dc0c041f9
-  - bf0728e000cd
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: diapysef
@@ -122,24 +122,24 @@ tools:
 - name: encyclopedia_encyclopedia
   owner: galaxyp
   revisions:
-  - d263296cd73e
   - eac99effe86f
+  - d263296cd73e
   - d0ea7589e95f
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_quantify
   owner: galaxyp
   revisions:
+  - 1c5cbf8f79ce
   - 4081e4faa4ab
   - 0fa397f4f40b
-  - 1c5cbf8f79ce
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_searchtolib
   owner: galaxyp
   revisions:
-  - 36880dfd9fa7
   - fb192dd6658a
+  - 36880dfd9fa7
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_walnut
@@ -159,9 +159,9 @@ tools:
 - name: maldi_quant_peak_detection
   owner: galaxyp
   revisions:
-  - 160538a890a6
-  - d286ff4600dd
   - e66f552a3c47
+  - d286ff4600dd
+  - 160538a890a6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maldi_quant_preprocessing
@@ -182,15 +182,15 @@ tools:
   owner: galaxyp
   revisions:
   - 9c52362ae7bb
+  - 2133b0be850a
+  - 37d669de2828
   - f522c08e900c
   - 4d17fcdeb8ff
-  - 97a7f34fcb6a
   - 7f432d87c82c
   - 1f39c833f65f
-  - 37d669de2828
   - e42225f8a659
   - 837224ad1694
-  - 2133b0be850a
+  - 97a7f34fcb6a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metanovo
@@ -202,55 +202,55 @@ tools:
 - name: metaquantome_db
   owner: galaxyp
   revisions:
-  - e63db1aa82ee
-  - 85b8866f06d7
   - 0ed07016d668
   - a72ac2c7cc5b
+  - 85b8866f06d7
+  - e63db1aa82ee
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_expand
   owner: galaxyp
   revisions:
-  - 352b37c66d97
   - 767c1d761aaf
-  - 990b4560ead7
   - 1974224d63c2
+  - 990b4560ead7
+  - 352b37c66d97
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_filter
   owner: galaxyp
   revisions:
+  - deaf035bbe9f
   - 35cc7ca0bdc7
   - 4f359549383c
-  - deaf035bbe9f
   - 99450519d727
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_sample
   owner: galaxyp
   revisions:
-  - c7745841de24
   - 06f6826d380c
-  - c1343e3389ca
+  - c7745841de24
   - e79958768a2c
+  - c1343e3389ca
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_stat
   owner: galaxyp
   revisions:
-  - b9d453dca8d3
+  - da986f83631b
   - d2eac53666f0
+  - b9d453dca8d3
   - d46d64e7964d
-  - da986f83631b
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_viz
   owner: galaxyp
   revisions:
-  - 8bd7734309f6
   - 1199751329b0
-  - 944b43462104
   - 9bf325045235
+  - 8bd7734309f6
+  - 944b43462104
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: morpheus
@@ -271,25 +271,25 @@ tools:
   owner: galaxyp
   revisions:
   - de7593c29499
-  - 28434abe6c5c
   - 8212e342e482
   - 593839e1f2c3
+  - 28434abe6c5c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msstatstmt
   owner: galaxyp
   revisions:
-  - bd1535813cfe
   - a5e394b36d87
+  - bd1535813cfe
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_consensusid
   owner: galaxyp
   revisions:
-  - f4be248c3d47
+  - 8960fb791701
   - 4e77b8f12cd3
+  - f4be248c3d47
   - 01dbaf6a57e0
-  - 8960fb791701
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_decoydatabase
@@ -303,20 +303,20 @@ tools:
 - name: openms_falsediscoveryrate
   owner: galaxyp
   revisions:
-  - c9eff69a7c62
-  - 6ccbf9a2072c
-  - f7fef900f5b2
   - 518b1730cf2a
+  - f7fef900f5b2
   - 9cdf15d3cfc8
+  - c9eff69a7c62
+  - 6ccbf9a2072c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_featurefindermultiplex
   owner: galaxyp
   revisions:
-  - 5e948629bc73
   - dff6c756eee5
-  - ca88bd28f116
+  - 5e948629bc73
   - 9876bda3ec53
+  - ca88bd28f116
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fidoadapter
@@ -331,19 +331,19 @@ tools:
 - name: openms_fileconverter
   owner: galaxyp
   revisions:
-  - 9b7977080f6d
-  - 6634cad7d797
-  - 5ad0b5bf1deb
   - 2a93a25f0599
+  - 5ad0b5bf1deb
+  - 6634cad7d797
+  - 9b7977080f6d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filefilter
   owner: galaxyp
   revisions:
-  - d6878d27f051
   - 0bb5056cb775
-  - fe4e4587d265
   - 05d5e1ddc985
+  - d6878d27f051
+  - fe4e4587d265
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileinfo
@@ -358,66 +358,66 @@ tools:
 - name: openms_filemerger
   owner: galaxyp
   revisions:
+  - 27cba4c5fc42
   - 39e8fde08881
   - b2fc8da99bcc
-  - 27cba4c5fc42
   - 92352a475eed
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_highresprecursormasscorrector
   owner: galaxyp
   revisions:
-  - 0efbc235f314
+  - d3546bb9fd8e
   - 9e26f5c770f8
   - d413dc49d650
-  - d3546bb9fd8e
+  - 0efbc235f314
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idconflictresolver
   owner: galaxyp
   revisions:
-  - c28f13cab67a
   - 8a04ed1c1d1b
-  - ca1740533b59
   - 3720e349ba2a
+  - ca1740533b59
+  - c28f13cab67a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idfilter
   owner: galaxyp
   revisions:
-  - a5d785af0ad8
   - 382cde407f81
-  - ca799a7246e7
   - c55dddc5844a
   - c427a8628cbe
+  - ca799a7246e7
+  - a5d785af0ad8
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmapper
   owner: galaxyp
   revisions:
-  - 8ddb7bab1138
   - b5d0905419da
-  - adca857b4884
   - 39caaa778d2e
+  - 8ddb7bab1138
+  - adca857b4884
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmerger
   owner: galaxyp
   revisions:
-  - 8d4db262964c
   - 18f93351f8b6
+  - 34e7afee141d
   - 1c5f31b8d632
+  - 8d4db262964c
   - f817513840a9
-  - 34e7afee141d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idposteriorerrorprobability
   owner: galaxyp
   revisions:
-  - 111c3a00136d
+  - 986e03d3201e
   - 5d9f175dff81
   - c69f69d7867a
-  - 986e03d3201e
+  - 111c3a00136d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idscoreswitcher
@@ -425,42 +425,42 @@ tools:
   revisions:
   - be74a8cd7d66
   - 0e52c85f3b15
-  - 4204882495f2
   - 476b5e296979
+  - 4204882495f2
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msgfplusadapter
   owner: galaxyp
   revisions:
-  - 2b2a7551a857
   - a407b6790342
-  - c18d8efa4474
+  - 2b2a7551a857
   - f5ec766d80cf
+  - c18d8efa4474
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_multiplexresolver
   owner: galaxyp
   revisions:
+  - 4e66c4e73909
   - d0304fb829c0
   - 021fdb80f204
-  - 4e66c4e73909
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_mztabexporter
   owner: galaxyp
   revisions:
-  - 2735db4dd8d9
   - 8098330f6d91
-  - ee860980edc6
   - bf32e0bcf554
+  - ee860980edc6
+  - 2735db4dd8d9
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathanalyzer
   owner: galaxyp
   revisions:
-  - a2a6e9551046
-  - 0ced5bc9f4dd
   - 08488066d588
+  - 0ced5bc9f4dd
+  - a2a6e9551046
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathassaygenerator
@@ -474,40 +474,40 @@ tools:
 - name: openms_openswathconfidencescoring
   owner: galaxyp
   revisions:
-  - c1809c05ae8c
   - 1bf940c18d93
   - e8f64a7dc470
+  - c1809c05ae8c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdecoygenerator
   owner: galaxyp
   revisions:
+  - 496cf619e311
   - f861ec9fbe59
   - 9f505cd4428f
-  - 496cf619e311
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdiaprescoring
   owner: galaxyp
   revisions:
-  - c99d5004b74f
   - d4396637b9f5
+  - c99d5004b74f
   - 0bddef8d144e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathfilesplitter
   owner: galaxyp
   revisions:
+  - 89254095cbf6
   - 4bb198c0bd3e
   - 8b814eafce2c
-  - 89254095cbf6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathmzmlfilecacher
   owner: galaxyp
   revisions:
-  - 05ec9fb05ed1
   - f9ed7e074900
+  - 05ec9fb05ed1
   - f82b320ceb90
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -515,24 +515,24 @@ tools:
   owner: galaxyp
   revisions:
   - 6e8cc5ed2a9b
-  - d31426ef20f6
   - 18826fb8e5db
+  - d31426ef20f6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathworkflow
   owner: galaxyp
   revisions:
   - 2aebe58de46e
-  - 4a7b96835140
   - bc63b4d12779
+  - 4a7b96835140
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_peakpickerhires
   owner: galaxyp
   revisions:
   - 3d8d4ada5405
-  - decc397c3b7e
   - 5ae104d0da6e
+  - decc397c3b7e
   - 6b01678ec2fc
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -540,51 +540,51 @@ tools:
   owner: galaxyp
   revisions:
   - 539a3a4dcc9e
+  - e039cc5c7aed
+  - 5182338d5e7c
   - dd173849c3d8
   - d6aca689dd48
-  - 5182338d5e7c
-  - e039cc5c7aed
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_proteinquantifier
   owner: galaxyp
   revisions:
-  - 8a45fd5a608a
-  - d426affe977c
   - 16026cdb1330
+  - d426affe977c
+  - 8a45fd5a608a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_targetedfileconverter
   owner: galaxyp
   revisions:
   - 43b9ed22e8ce
-  - dd71e020e2aa
   - 9c70a651a53e
+  - dd71e020e2aa
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_textexporter
   owner: galaxyp
   revisions:
-  - d063e2fe4ba4
-  - 9020199dba0a
   - 1b03536aa3c9
+  - 9020199dba0a
+  - d063e2fe4ba4
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_xmlvalidator
   owner: galaxyp
   revisions:
   - 78c080d36945
-  - ad2ba3a95a02
   - f036e8cf1a55
+  - ad2ba3a95a02
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_xtandemadapter
   owner: galaxyp
   revisions:
-  - 7f6a1f27553e
-  - 5c2a97a234d6
   - c8b225c69a7f
+  - 7f6a1f27553e
   - fb52e95a370c
+  - 5c2a97a234d6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pep_pointer
@@ -603,21 +603,21 @@ tools:
 - name: peptide_genomic_coordinate
   owner: galaxyp
   revisions:
-  - 5f49ffce52cb
   - cb0378d2d487
+  - 5f49ffce52cb
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: peptideshaker
   owner: galaxyp
   revisions:
+  - 07ff622ec007
   - a72c48001f7c
-  - da885ca16cb2
-  - 3634c90301af
-  - 3ec27b4cee7c
-  - 1beff3ddce58
   - 943a34df6047
-  - 07ff622ec007
   - 7fdd9119cc4f
+  - 1beff3ddce58
+  - 3634c90301af
+  - da885ca16cb2
+  - 3ec27b4cee7c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: percolator
@@ -677,10 +677,10 @@ tools:
 - name: uniprotxml_downloader
   owner: galaxyp
   revisions:
-  - 1a5690a5eedc
   - 265c35540faa
-  - 12692567c7f9
   - a371252a2cf6
+  - 12692567c7f9
+  - 1a5690a5eedc
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: validate_fasta_database
diff --git a/usegalaxy.org.au/rad_seq.yml b/usegalaxy.org.au/rad_seq.yml
index feba74905..2c2142b7e 100644
--- a/usegalaxy.org.au/rad_seq.yml
+++ b/usegalaxy.org.au/rad_seq.yml
@@ -2,97 +2,97 @@ tools:
 - name: stacks2_clonefilter
   owner: iuc
   revisions:
+  - 110a346daf36
   - 42201b90e3f4
   - 289b7d6b69a4
-  - 110a346daf36
-  - e345aadf914f
-  - 2f1d464ebfd2
   - cd5f98911089
+  - 2f1d464ebfd2
+  - e345aadf914f
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_cstacks
   owner: iuc
   revisions:
-  - fcce77c09289
+  - 0cd2df8af811
   - c207119ba5f6
   - 0345dbaaa79b
+  - fcce77c09289
   - 8501601a118d
   - 42d9087b4789
-  - 0cd2df8af811
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_denovomap
   owner: iuc
   revisions:
-  - 421c33b8bf17
-  - 89eb29319bf4
-  - 33486216eec0
-  - ad5ab22ffe24
   - 04db7fd6b238
+  - ad5ab22ffe24
+  - 33486216eec0
   - 405a212b32ab
+  - 421c33b8bf17
+  - 89eb29319bf4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_gstacks
   owner: iuc
   revisions:
-  - 7370bb65bad4
   - eb784fa07f80
-  - fa51dc5e8386
   - f6e91108b7b1
   - 1d839ead7ad3
   - 7b72fde3d27e
+  - 7370bb65bad4
+  - fa51dc5e8386
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_kmerfilter
   owner: iuc
   revisions:
-  - 8a55d29c8fcf
   - 1544278c272e
-  - c9b77ced9a78
-  - d30e36c48c93
   - 3d70c2996730
+  - 8a55d29c8fcf
   - a3e86cd9cac7
+  - d30e36c48c93
+  - c9b77ced9a78
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_populations
   owner: iuc
   revisions:
   - 564c33e5c3e3
+  - a5969aa9347e
+  - b242deb58952
+  - 7b881f5f5ad5
   - 887cf585cafc
   - e2db212d64ad
-  - 7b881f5f5ad5
-  - b242deb58952
-  - a5969aa9347e
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_procrad
   owner: iuc
   revisions:
   - 8cff84759bf6
-  - e897c74a48bb
   - bd5ff77e2036
-  - 9a171f9a450b
   - b4bab607eb05
+  - 9a171f9a450b
+  - e897c74a48bb
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_refmap
   owner: iuc
   revisions:
-  - 4f65e343ecdf
-  - adc7a7610d4f
-  - 5e10f396979e
   - 6dafad990086
-  - 887e0991eb24
   - 33f0793edf93
+  - 5e10f396979e
+  - adc7a7610d4f
+  - 887e0991eb24
+  - 4f65e343ecdf
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_shortreads
   owner: iuc
   revisions:
-  - 43e3eeb2e0ec
+  - 4e280b27a831
   - c287418eb288
   - 97575d01f06b
-  - 4e280b27a831
+  - 43e3eeb2e0ec
   - c5d7050e4ad7
   - 17d39bf0a63a
   tool_panel_section_label: RAD-seq
@@ -100,34 +100,34 @@ tools:
 - name: stacks2_sstacks
   owner: iuc
   revisions:
-  - d9bf483266a1
   - a819ec3b362d
-  - 09b8edb56d80
-  - 0b8c84a7fdb5
   - 9586f08634c0
+  - 0b8c84a7fdb5
+  - d9bf483266a1
+  - 09b8edb56d80
   - cd034465d4a4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_tsv2bam
   owner: iuc
   revisions:
-  - a4b4bd84f69e
   - 69842dd5aa48
   - 2645575d1bf2
   - 95351dd0fd3f
-  - bf0e43ab0416
   - a9c34a289493
+  - a4b4bd84f69e
+  - bf0e43ab0416
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_ustacks
   owner: iuc
   revisions:
+  - cfb504394ae1
   - 912f904a6e1e
   - d033e1ccb386
-  - cfb504394ae1
   - bb0475c884ff
-  - 8a35a3bc6752
   - d1fda11e602f
+  - 8a35a3bc6752
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_assembleperead
@@ -163,9 +163,9 @@ tools:
 - name: stacks_populations
   owner: iuc
   revisions:
-  - 95286af4139b
-  - d1fad35bdb4a
   - d504d945a655
+  - d1fad35bdb4a
+  - 95286af4139b
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_procrad
@@ -195,8 +195,8 @@ tools:
 - name: stacks_sstacks
   owner: iuc
   revisions:
-  - 563af4497055
   - 96de7538bf0c
+  - 563af4497055
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_stats
diff --git a/usegalaxy.org.au/rna_seq.yml b/usegalaxy.org.au/rna_seq.yml
index b4fc02362..984ecd588 100644
--- a/usegalaxy.org.au/rna_seq.yml
+++ b/usegalaxy.org.au/rna_seq.yml
@@ -2,19 +2,19 @@ tools:
 - name: arriba_draw_fusions
   owner: iuc
   revisions:
+  - 7acb00fc980a
+  - 31f8063eedea
   - 2d4e3aff9dc7
   - cf01dd6c6b1f
-  - 31f8063eedea
-  - 7acb00fc980a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba_get_filters
   owner: iuc
   revisions:
-  - 7a5a2d28c539
-  - 125d20cb23d7
-  - 703a2cb3fb38
   - 32e542c2a773
+  - 703a2cb3fb38
+  - 125d20cb23d7
+  - 7a5a2d28c539
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba
@@ -34,8 +34,8 @@ tools:
 - name: blockclust
   owner: rnateam
   revisions:
-  - dbb6ee3179bc
   - aab6cf87b40a
+  - dbb6ee3179bc
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: chira_collapse
@@ -84,25 +84,25 @@ tools:
   owner: devteam
   revisions:
   - ad5d061fbdf2
-  - e66b9b5b8580
   - f648e5180e40
+  - e66b9b5b8580
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cufflinks
   owner: devteam
   revisions:
+  - d080005cffe1
   - e04dbae2abe0
   - 6926716bbfb5
-  - d080005cffe1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffmerge
   owner: devteam
   revisions:
-  - 22cf48ad7b16
   - 6a6717a5f421
   - 86285ddd4512
   - cf747d1bd79a
+  - 22cf48ad7b16
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffnorm
@@ -135,49 +135,49 @@ tools:
 - name: describe_samples
   owner: iuc
   revisions:
-  - 8f0181aacb7a
-  - 3b36efd62b3e
   - 0693ccd171c4
+  - 3b36efd62b3e
+  - 8f0181aacb7a
   - e3b16fd7dd08
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deseq2
   owner: iuc
   revisions:
-  - 8fe98f7094de
   - d027d1f4984e
-  - 24a09ca67621
-  - cd9874cb9019
   - 9a882d108833
   - 0696db066a5b
+  - 24a09ca67621
+  - 8fe98f7094de
+  - cd9874cb9019
   - 6a3a025714d3
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dexseq
   owner: iuc
   revisions:
-  - b47c006d90c5
+  - df929f257179
   - 9a7c5b6d8f1e
-  - 62adf13b86ea
   - 2872c633f07e
-  - df929f257179
+  - 62adf13b86ea
+  - b47c006d90c5
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: edger
   owner: iuc
   revisions:
-  - 555659de7321
-  - 3d89af8a44f0
-  - 9bdff28ae1b1
-  - 5bf899c13979
-  - 6e53e565fc6a
-  - a8305cf0c951
+  - 070900306913
   - 334ce9b1bac5
+  - 555659de7321
   - ae2aad0a6d50
-  - 0cb907a2a810
   - df0c8d0a5992
-  - 070900306913
+  - 0cb907a2a810
   - f2843df56434
+  - a8305cf0c951
+  - 6e53e565fc6a
+  - 3d89af8a44f0
+  - 5bf899c13979
+  - 9bdff28ae1b1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: egsea
@@ -196,17 +196,17 @@ tools:
 - name: featurecounts
   owner: iuc
   revisions:
+  - 6f66ae7c5f7a
   - a56fbe2d6ba7
-  - af814359d244
+  - f3a5f075498f
+  - a37612abf7f9
   - 38b6d12edc68
   - 90d16db017d7
-  - e6a2a912677a
+  - f9d49f5cb597
+  - af814359d244
   - ea04b737afa0
+  - e6a2a912677a
   - 7db9d3ea71c9
-  - f3a5f075498f
-  - f9d49f5cb597
-  - 6f66ae7c5f7a
-  - a37612abf7f9
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: feelnc
@@ -230,8 +230,8 @@ tools:
 - name: gffcompare
   owner: iuc
   revisions:
-  - 3c97c841a443
   - 3c5e024a18cf
+  - 3c97c841a443
   - 0f710191a66d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -246,19 +246,19 @@ tools:
   revisions:
   - f4af63aaf57a
   - 6c19daec423d
-  - a86e80d3c09c
   - 26371a1df031
+  - d4b55e2beb12
   - 6ab42baa56e9
   - 3fb01a8c902d
-  - d4b55e2beb12
+  - a86e80d3c09c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: htseq_count
   owner: lparsons
   revisions:
-  - 916cb26bd9d3
-  - 67b0b160903a
   - 4418229c501e
+  - 67b0b160903a
+  - 916cb26bd9d3
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: isoformswitchanalyzer
@@ -270,33 +270,33 @@ tools:
 - name: kallisto_pseudo
   owner: iuc
   revisions:
-  - 1c75aa5de15e
   - 5ae5c312d718
+  - 1c75aa5de15e
   - ce5d418183c5
-  - 87c11c05d238
   - 01247aaf0a10
+  - 87c11c05d238
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kallisto_quant
   owner: iuc
   revisions:
-  - 4f9c4e6566e5
   - 40985510cd98
-  - c971db6f0fe5
   - 10c98fab6c5a
+  - c971db6f0fe5
+  - 4f9c4e6566e5
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: limma_voom
   owner: iuc
   revisions:
+  - 708348a17fa1
+  - e827f9aae031
+  - 119b069fc845
+  - d6f5fa4ee473
+  - 58c35179ebf0
   - 32511f586472
   - 0921444c832d
-  - d6f5fa4ee473
   - 97e06a4c7c75
-  - 119b069fc845
-  - e827f9aae031
-  - 708348a17fa1
-  - 58c35179ebf0
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mircounts
@@ -353,20 +353,20 @@ tools:
   owner: iuc
   revisions:
   - b0f2be869d6d
-  - c7c55b694974
-  - 4df95e2d7f61
-  - 3ea5a2a63fa2
-  - 4014de1b6daf
+  - 99b17b74a8cd
+  - 980d2a2e1180
   - 0a563fd2f22e
+  - 4df95e2d7f61
+  - c772497b2c32
+  - 7ed2edc1337f
   - 79de45b5069b
   - 4074fc1940e2
-  - 99b17b74a8cd
-  - 7ed2edc1337f
-  - 5ec75f5dae3c
-  - b9e04854e2bb
-  - c772497b2c32
-  - 980d2a2e1180
+  - 4014de1b6daf
   - e132e7d02a3e
+  - b9e04854e2bb
+  - c7c55b694974
+  - 3ea5a2a63fa2
+  - 5ec75f5dae3c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sailfish
@@ -379,35 +379,35 @@ tools:
   owner: bgruening
   revisions:
   - 15cd64d7c58b
-  - 2c0ca397d302
   - f4d5237a84f6
+  - ebab418107f5
+  - cc05793bb896
   - 53e9709776a0
   - e3d32471da11
-  - ebab418107f5
+  - 2c0ca397d302
   - 49121db48873
-  - cc05793bb896
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seurat
   owner: iuc
   revisions:
-  - c0fd285eb553
   - 8c28affc7c48
-  - fab6ff46e019
+  - c0fd285eb553
   - 56242ff81c84
+  - fab6ff46e019
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
   owner: iuc
   revisions:
-  - cbf488da3b2c
-  - 1ebd14235b92
   - 914cfcba0ec8
-  - 76d290331481
   - dd4df992d93d
   - cef79931dda5
   - ae618321f34a
   - 258d696dbd7e
+  - 76d290331481
+  - cbf488da3b2c
+  - 1ebd14235b92
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: targetfinder
@@ -437,19 +437,19 @@ tools:
 - name: transdecoder
   owner: iuc
   revisions:
-  - ffd1300599a1
   - d0d4cef4f967
-  - c6334cb383ff
   - 0db979fead3a
+  - c6334cb383ff
+  - ffd1300599a1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_abundance_estimates_to_matrix
   owner: iuc
   revisions:
-  - d6a479fd4281
-  - bcc5f03f1900
   - 74217fbfba4d
+  - bcc5f03f1900
   - ba3720d7e68b
+  - d6a479fd4281
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_align_and_estimate_abundance
@@ -464,63 +464,63 @@ tools:
 - name: trinity_analyze_diff_expr
   owner: iuc
   revisions:
-  - 3f4094b6a565
   - 9ff3765e7172
   - fab23c3b5258
+  - 3f4094b6a565
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_contig_exn50_statistic
   owner: iuc
   revisions:
-  - 34a018cbee9c
+  - 870ac06dff8e
   - 4687ecf0eb2d
   - be3f26533209
-  - 870ac06dff8e
+  - 34a018cbee9c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_define_clusters_by_cutting_tree
   owner: iuc
   revisions:
-  - 65e7dea767ea
-  - 5192f657f305
   - 05ab8d5e04a2
-  - 33406f5a445c
+  - 65e7dea767ea
   - c5fbddcac63a
+  - 33406f5a445c
+  - 5192f657f305
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_filter_low_expr_transcripts
   owner: iuc
   revisions:
   - 1fdb25a8384d
-  - a35cba31d904
-  - e406ac71165d
   - 6f0fb35b799c
+  - e406ac71165d
+  - a35cba31d904
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_gene_to_trans_map
   owner: iuc
   revisions:
-  - c2c039e421af
   - 964b7efe2639
   - 37a1129c89d2
+  - c2c039e421af
   - 7c7fbf13aadd
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_run_de_analysis
   owner: iuc
   revisions:
+  - eafea3083352
   - 047c22569787
   - 1d689e4e1caf
-  - eafea3083352
   - 24e94d84adc9
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_samples_qccheck
   owner: iuc
   revisions:
+  - 9871104ea630
   - 3a4ac03d1266
   - 04bb8bb7c198
-  - 9871104ea630
   - 1812dbc5bb7b
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -539,15 +539,15 @@ tools:
 - name: trinity
   owner: iuc
   revisions:
-  - 48636f857c4b
   - db1f362cca3e
-  - 8f1c3df4dd49
-  - 9fa24d5aac68
-  - d84caa5a98ad
-  - 32b86cd8eb50
   - cee61b3fcf78
-  - d2bc35f3d1c5
+  - 32b86cd8eb50
+  - 9fa24d5aac68
   - c9cfec002f71
+  - 48636f857c4b
+  - 8f1c3df4dd49
+  - d2bc35f3d1c5
+  - d84caa5a98ad
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinotate
diff --git a/usegalaxy.org.au/rseqc.yml b/usegalaxy.org.au/rseqc.yml
index f931924b3..5c8b52871 100644
--- a/usegalaxy.org.au/rseqc.yml
+++ b/usegalaxy.org.au/rseqc.yml
@@ -2,9 +2,9 @@ tools:
 - name: rseqc
   owner: nilesh
   revisions:
-  - 080fd5739bb4
   - 473382134e56
   - 1a052c827e88
+  - 080fd5739bb4
   - 27e16a30667a
   tool_panel_section_label: RSeQC
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/sambam.yml b/usegalaxy.org.au/sambam.yml
index 484bfadd0..31f9558a4 100644
--- a/usegalaxy.org.au/sambam.yml
+++ b/usegalaxy.org.au/sambam.yml
@@ -2,9 +2,9 @@ tools:
 - name: bam_to_sam
   owner: devteam
   revisions:
-  - 10184eaa85fc
   - 88eedb4abea0
   - 3c661e57a88f
+  - 10184eaa85fc
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_filter
@@ -25,15 +25,15 @@ tools:
 - name: bamtools_split_paired
   owner: iuc
   revisions:
-  - 5325e44297b9
   - 75d5afa09972
+  - 5325e44297b9
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_split_tag
   owner: iuc
   revisions:
-  - e9b9c489aacc
   - e30af4e78cd3
+  - e9b9c489aacc
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools
@@ -76,16 +76,16 @@ tools:
   owner: iuc
   revisions:
   - 19ece8afbaab
-  - 30a201c9c310
-  - e7fd6754d093
   - 5f8e69cc4c6e
+  - e7fd6754d093
+  - 30a201c9c310
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: qualimap_multi_bamqc
   owner: iuc
   revisions:
-  - 17b35d23731f
   - e38af83df163
+  - 17b35d23731f
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam2interval
@@ -123,26 +123,26 @@ tools:
 - name: samtool_filter2
   owner: devteam
   revisions:
-  - 649a225999a5
   - 56c31114ad4a
+  - 649a225999a5
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bedcov
   owner: devteam
   revisions:
-  - 46c6639921f1
-  - 9149ad20699a
   - 12749212f61b
   - 6856f8a01905
+  - 46c6639921f1
+  - 9149ad20699a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_calmd
   owner: devteam
   revisions:
-  - 92ec40abcdcf
   - 06dc50b7b711
-  - 26b4f9f98aca
   - 33208952b99d
+  - 92ec40abcdcf
+  - 26b4f9f98aca
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_coverage
@@ -160,11 +160,11 @@ tools:
 - name: samtools_fastx
   owner: iuc
   revisions:
+  - 720217c23995
   - b906586a6596
+  - 66e23b11feae
   - a8d69aee190e
   - b3d99709fe1a
-  - 720217c23995
-  - 66e23b11feae
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_fixmate
@@ -177,11 +177,11 @@ tools:
 - name: samtools_flagstat
   owner: devteam
   revisions:
-  - cc61ade70eb8
+  - 22970df7a40e
   - db17d5321bad
-  - fefd89ab563c
+  - cc61ade70eb8
   - fe34990e5ce7
-  - 22970df7a40e
+  - fefd89ab563c
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_idxstats
@@ -204,37 +204,37 @@ tools:
 - name: samtools_merge
   owner: iuc
   revisions:
-  - 65a38e8c8e2a
-  - 740ce0a18f0d
   - b40e2d865d52
   - 36677f429310
   - cae2794d2deb
+  - 740ce0a18f0d
+  - 65a38e8c8e2a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
   owner: devteam
   revisions:
-  - 329deb17a9f7
-  - 9da0311ab1dd
-  - 8da515fbc1bf
   - b61f5d6a7f25
   - 583abf29fc8e
+  - 9da0311ab1dd
+  - 8da515fbc1bf
+  - 329deb17a9f7
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_phase
   owner: devteam
   revisions:
-  - b5c3b1856370
   - 1e5880498f52
+  - b5c3b1856370
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_reheader
   owner: devteam
   revisions:
-  - db000c6007a0
   - bb8cfc6f6e0c
   - 30388d878f81
   - 85e38b31e8b3
+  - db000c6007a0
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_rmdup
@@ -246,54 +246,54 @@ tools:
 - name: samtools_slice_bam
   owner: devteam
   revisions:
-  - a4a10c7924d1
   - b8beef827165
   - 344fc91e1bfd
+  - a4a10c7924d1
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_sort
   owner: devteam
   revisions:
-  - cab3f8d35989
   - e613c1ad4c4c
-  - 6c2c1836728b
   - d54a4df48867
+  - 6c2c1836728b
+  - cab3f8d35989
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_split
   owner: devteam
   revisions:
+  - 135c85f4cfaf
   - 5d9ae78f34d3
   - bd850490c7f1
   - 818030fa6bbf
-  - 135c85f4cfaf
-  - b7f7826ef1cd
   - bcedabb53ddf
+  - b7f7826ef1cd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_stats
   owner: devteam
   revisions:
   - 24c5d43cb545
-  - 1cc79f49b8d5
   - 5a08c09b9311
   - 541082d03bef
-  - 145f6d74ff5e
   - 3a0efe14891f
+  - 1cc79f49b8d5
+  - 145f6d74ff5e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_view
   owner: iuc
   revisions:
-  - 6be888be75f9
-  - 2dce91e11ca7
-  - 350bbc5c2ffd
+  - 0dbf49c414ae
+  - 5826298f6a73
   - b72793637686
-  - c370440f901e
   - b01db2684fa5
+  - 2dce91e11ca7
   - 32dc5f781059
-  - 5826298f6a73
-  - 0dbf49c414ae
+  - 350bbc5c2ffd
   - bf328cec6a42
+  - c370440f901e
+  - 6be888be75f9
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/send_data.yml b/usegalaxy.org.au/send_data.yml
index f0b4a3e4f..c0488a861 100644
--- a/usegalaxy.org.au/send_data.yml
+++ b/usegalaxy.org.au/send_data.yml
@@ -2,13 +2,13 @@ tools:
 - name: ena_upload
   owner: iuc
   revisions:
-  - 4aab5ae907b6
   - 5cb6146337d8
+  - ea5e944f447d
   - 480d9e9d156b
-  - 59bb6d34fca6
+  - 4aab5ae907b6
   - d147d6455873
-  - 6f6537780379
+  - 59bb6d34fca6
   - a62c4a11a67d
-  - ea5e944f447d
+  - 6f6537780379
   tool_panel_section_label: Send Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/single_cell.yml b/usegalaxy.org.au/single_cell.yml
index cc56380a9..049f2e627 100644
--- a/usegalaxy.org.au/single_cell.yml
+++ b/usegalaxy.org.au/single_cell.yml
@@ -8,18 +8,18 @@ tools:
 - name: alevin
   owner: bgruening
   revisions:
-  - e4c01dcece8b
-  - ecb9ea6269ee
   - e32b215b7c04
-  - f2000bc73102
+  - ecb9ea6269ee
+  - e4c01dcece8b
   - c9944a2600f1
+  - f2000bc73102
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_export
   owner: iuc
   revisions:
-  - cfaf5a405371
   - c0b037b12765
+  - cfaf5a405371
   - e1c3c2f2a834
   - 707023fa62fe
   tool_panel_section_label: Single-cell
@@ -27,45 +27,45 @@ tools:
 - name: anndata_import
   owner: iuc
   revisions:
-  - fb9e030ffae4
   - 00712416fdaa
-  - cfc3f5a57dc6
   - 55e35e9203cf
-  - d330b3082107
+  - fb9e030ffae4
   - 93dd15e13e6a
   - 32e547223c9e
+  - d330b3082107
+  - cfc3f5a57dc6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_inspect
   owner: iuc
   revisions:
   - 6f0d0c784f09
+  - b9fac48532eb
   - 0bf7fddf90c7
   - ee98d611afc6
-  - 688357ad5e61
   - 39e945f0b2c1
-  - b9fac48532eb
   - 038e32885fec
+  - 688357ad5e61
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_manipulate
   owner: iuc
   revisions:
-  - 7e8c677a7b71
+  - 43cb7b5a6fe7
   - ed4996a16f7f
+  - d4af736e7b83
   - 3d748954434b
+  - 7e8c677a7b71
   - b85871dd69f9
-  - 43cb7b5a6fe7
-  - d4af736e7b83
   - 9bd945a03d7b
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_ops
   owner: ebi-gxa
   revisions:
+  - 2e8022f1923c
   - a4774b7b2e85
   - fe75d2414dc0
-  - 2e8022f1923c
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: baredsc_1d
@@ -80,9 +80,9 @@ tools:
 - name: baredsc_2d
   owner: iuc
   revisions:
-  - 344c2af50552
-  - a90f8efe08b4
   - aa4a6f0916b4
+  - a90f8efe08b4
+  - 344c2af50552
   - c29e7bb492bf
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -90,18 +90,18 @@ tools:
   owner: iuc
   revisions:
   - c32347702e12
-  - 5b7c81b35b89
   - 050cf43887d3
+  - 5b7c81b35b89
   - b13d3e4c48e1
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: baredsc_combine_2d
   owner: iuc
   revisions:
-  - 1d77986f9ddc
-  - ae969fdb8442
   - 239193b96d72
   - 02fc39c8610d
+  - 1d77986f9ddc
+  - ae969fdb8442
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cell_intensity_processing
@@ -137,11 +137,11 @@ tools:
 - name: dropletutils
   owner: iuc
   revisions:
-  - 2c1200fba922
-  - 8855361fcfc5
   - a9caad671439
-  - cfe1e6c28d95
+  - 8855361fcfc5
   - cdf4443d5625
+  - cfe1e6c28d95
+  - 2c1200fba922
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: episcanpy_build_matrix
@@ -171,15 +171,15 @@ tools:
 - name: hicexplorer_chicaggregatestatistic
   owner: bgruening
   revisions:
-  - 01c37e54e86e
   - fb7068d30ec9
+  - 01c37e54e86e
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicdifferentialtest
   owner: bgruening
   revisions:
-  - 9d42a6133690
   - 57aeaf6b237d
+  - 9d42a6133690
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicexportdata
@@ -199,22 +199,22 @@ tools:
 - name: hicexplorer_chicqualitycontrol
   owner: bgruening
   revisions:
-  - b892fa1fcaec
   - a63e9713c39d
+  - b892fa1fcaec
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicsignificantinteractions
   owner: bgruening
   revisions:
-  - 640e0e45518a
   - 45a386d18509
+  - 640e0e45518a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicviewpointbackgroundmodel
   owner: bgruening
   revisions:
-  - f963c251ac77
   - 9d02f1819e81
+  - f963c251ac77
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_chicviewpoint
@@ -227,22 +227,22 @@ tools:
 - name: hicexplorer_hicadjustmatrix
   owner: bgruening
   revisions:
-  - e06265d204f6
   - 2dccb6bb0add
+  - e06265d204f6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicaggregatecontacts
   owner: bgruening
   revisions:
-  - b05f662f9f35
   - f0216498a666
+  - b05f662f9f35
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicaverageregions
   owner: bgruening
   revisions:
-  - c72fa6cb8817
   - 8a11d70b6cd8
+  - c72fa6cb8817
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hiccomparematrices
@@ -255,8 +255,8 @@ tools:
 - name: hicexplorer_hiccompartmentspolarization
   owner: bgruening
   revisions:
-  - 3a6a5381db36
   - 4401ed529d2c
+  - 3a6a5381db36
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicconvertformat
@@ -269,15 +269,15 @@ tools:
 - name: hicexplorer_hiccorrectmatrix
   owner: bgruening
   revisions:
-  - ea19190ce5e0
   - 62b720dceb56
+  - ea19190ce5e0
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hiccorrelate
   owner: bgruening
   revisions:
-  - 2786a931cad2
   - 2b4d6a8dab36
+  - 2786a931cad2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicdetectloops
@@ -311,15 +311,15 @@ tools:
 - name: hicexplorer_hicinfo
   owner: bgruening
   revisions:
-  - 51e40e9b6c3c
   - e4f8fceab96a
+  - 51e40e9b6c3c
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicinterintratad
   owner: bgruening
   revisions:
-  - c261b6b05ee3
   - 55b013e59018
+  - c261b6b05ee3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergedomains
@@ -407,19 +407,19 @@ tools:
 - name: hicexplorer_hicvalidatelocations
   owner: bgruening
   revisions:
-  - 11a3385e03b5
   - 1d201e8378b3
+  - 11a3385e03b5
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: modify_loom
   owner: iuc
   revisions:
-  - eeab712b0b99
-  - e98619de2776
-  - 4b0adaa31c95
   - 0f1aaff9b22d
-  - 7784821452ac
   - 59be31ac9dc3
+  - e98619de2776
+  - eeab712b0b99
+  - 7784821452ac
+  - 4b0adaa31c95
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_compare
@@ -431,9 +431,9 @@ tools:
 - name: music_construct_eset
   owner: bgruening
   revisions:
-  - 7ffaa0968da3
-  - 282819d09a4f
   - 2cfd0db49bbc
+  - 282819d09a4f
+  - 7ffaa0968da3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_deconvolution
@@ -465,11 +465,11 @@ tools:
 - name: raceid_clustering
   owner: iuc
   revisions:
-  - 0bff0ee0683a
+  - 7e014059a88d
+  - c4f39bf4a068
   - a4b734cd253b
   - f911a64454fb
-  - c4f39bf4a068
-  - 7e014059a88d
+  - 0bff0ee0683a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_filtnormconf
@@ -492,19 +492,19 @@ tools:
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
-  - a6821f856a1e
   - df8e4e54d367
+  - a6821f856a1e
   - 69018f285aa3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_trajectory
   owner: iuc
   revisions:
-  - c92d0f9338c5
-  - 2af7c5086a96
   - 44b935f2271b
   - e93b008c637a
   - 72979cac22b2
+  - c92d0f9338c5
+  - 2af7c5086a96
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: run_sccaf
@@ -522,98 +522,98 @@ tools:
 - name: scanpy_cluster_reduce_dimension
   owner: iuc
   revisions:
+  - 38db3fef7aad
+  - 77b91b9bdf52
+  - aaa5da8e73a9
   - cb43c5d3acd3
-  - f9353ee6a0d4
-  - 6acb08931836
-  - 4d8f983cd751
   - 6f83f8fd381f
-  - aaa5da8e73a9
-  - 77b91b9bdf52
   - b2df381a6004
-  - 38db3fef7aad
+  - 6acb08931836
+  - 4d8f983cd751
+  - f9353ee6a0d4
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter
   owner: iuc
   revisions:
   - 72a6bebab2a5
-  - d636ce5cde16
-  - fc0321c000a3
   - a97abb8cd15b
-  - b409c2486353
-  - 3c86f71498bc
+  - d636ce5cde16
   - 8cb783c81905
   - 277313130da5
+  - 3c86f71498bc
+  - fc0321c000a3
+  - b409c2486353
   - a03ff8633507
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_inspect
   owner: iuc
   revisions:
-  - 3081ff5c84a3
+  - 6bd82ed14acd
   - 5c3ebe2adc77
-  - 4338bf96809e
-  - c5d3684f7c4c
-  - 6c145a6868cc
+  - 3081ff5c84a3
   - f54f0f0598ad
+  - 6c145a6868cc
   - 5e9171dc8244
-  - c0a80a16560f
   - 18262103fa61
-  - 6bd82ed14acd
+  - c0a80a16560f
+  - 4338bf96809e
+  - c5d3684f7c4c
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_normalize
   owner: iuc
   revisions:
-  - d844935c906c
   - c9cb76cf8d6c
-  - 146ae5d70b47
   - 7b9fafe32c86
-  - ab55fe8030b6
+  - 146ae5d70b47
+  - 56c0d4acef02
+  - 3bcd5445cd7a
   - 94c19fb1281c
-  - 9f354c7c8c92
   - a407e7f8bdc1
-  - 3bcd5445cd7a
-  - 56c0d4acef02
+  - ab55fe8030b6
+  - d844935c906c
+  - 9f354c7c8c92
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot
   owner: iuc
   revisions:
-  - 6f5349dd5c49
-  - 9b0cdb8cf6be
-  - 0185bd174ea0
-  - 6adf98e782f3
-  - 7647e5cd1b8b
+  - 1072ce66b426
   - aa0c474463c2
   - dbbe1ea8ecb1
-  - 40812a65a78b
   - f7446fd8d5e7
+  - 0185bd174ea0
+  - 40812a65a78b
+  - 6f5349dd5c49
+  - 9b0cdb8cf6be
+  - 7647e5cd1b8b
   - 95777145cb92
-  - 1072ce66b426
+  - 6adf98e782f3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_remove_confounders
   owner: iuc
   revisions:
-  - a39040ae0a38
-  - 215733a383f2
-  - 9fb627495ec2
-  - d18e7a6e5cd4
+  - fe8f16c594ec
+  - 73ab2ac53d06
   - f2f6c703da06
-  - 458e8f43a775
   - c65fce500915
-  - 73ab2ac53d06
-  - fe8f16c594ec
+  - d18e7a6e5cd4
+  - 458e8f43a775
   - bf2017df9837
+  - a39040ae0a38
+  - 9fb627495ec2
+  - 215733a383f2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_create_qcmetric_ready_sce
   owner: iuc
   revisions:
+  - b834074a9aff
   - 8f333f90d8d6
   - fd808de478b1
-  - b834074a9aff
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_filter
@@ -633,9 +633,9 @@ tools:
 - name: scater_plot_dist_scatter
   owner: iuc
   revisions:
-  - 2e41b35b5bdd
   - ef4c80837bc5
   - 81e5bdff4853
+  - 2e41b35b5bdd
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_exprs_freq
@@ -647,9 +647,9 @@ tools:
 - name: scater_plot_pca
   owner: iuc
   revisions:
+  - 46fc6751d746
   - c99ba278dfa9
   - 9e5c0bb18d08
-  - 46fc6751d746
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_tsne
@@ -871,8 +871,8 @@ tools:
 - name: sinto_barcode
   owner: iuc
   revisions:
-  - d1b34ac42b8f
   - d0f56ac6bb60
+  - d1b34ac42b8f
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sinto_fragments
@@ -898,8 +898,8 @@ tools:
 - name: snapatac2_peaks_and_motif
   owner: iuc
   revisions:
-  - 588c811fdd48
   - 88192fe25375
+  - 588c811fdd48
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snapatac2_plotting
@@ -912,8 +912,8 @@ tools:
 - name: snapatac2_preprocessing
   owner: iuc
   revisions:
-  - fef8f61cb34c
   - cec3e76eaf05
+  - fef8f61cb34c
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: squidpy
@@ -925,8 +925,8 @@ tools:
 - name: velocyto_cli
   owner: iuc
   revisions:
-  - 883c33ef3372
   - 90e95e9ee190
+  - 883c33ef3372
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vitessce_spatial
diff --git a/usegalaxy.org.au/statistics.yml b/usegalaxy.org.au/statistics.yml
index 4e45d7a99..a4a277c48 100644
--- a/usegalaxy.org.au/statistics.yml
+++ b/usegalaxy.org.au/statistics.yml
@@ -32,32 +32,32 @@ tools:
 - name: datamash_ops
   owner: iuc
   revisions:
-  - 2f3c6f2dcf39
-  - 746e8e4bf929
   - 419027d822d6
-  - 562f3c677828
   - 4c07ddedc198
+  - 562f3c677828
+  - 746e8e4bf929
+  - 2f3c6f2dcf39
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_ava_perclass
   owner: devteam
   revisions:
-  - a0defff5cf89
   - b87bbe6bc044
+  - a0defff5cf89
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_avb_all
   owner: devteam
   revisions:
-  - e01e8a9a82f4
   - 8564f6927b87
+  - e01e8a9a82f4
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_ivc_all
   owner: devteam
   revisions:
-  - 506ae7b0d85d
   - 0b89b03ad760
+  - 506ae7b0d85d
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_var_perclass
@@ -71,8 +71,8 @@ tools:
   owner: devteam
   revisions:
   - cb1c59d69557
-  - 6c29c7e347e8
   - 7a15159140d1
+  - 6c29c7e347e8
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: generate_pc_lda_matrix
@@ -114,11 +114,11 @@ tools:
 - name: sklearn_build_pipeline
   owner: bgruening
   revisions:
-  - aef56d0e7a61
-  - 840f29aad145
   - 9c3e1d3235c8
   - 4c4ec859c31a
   - b1eda492f063
+  - 840f29aad145
+  - aef56d0e7a61
   - 7442b94d6a1e
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -127,30 +127,30 @@ tools:
   revisions:
   - d0352e8b4c10
   - 07843f917990
-  - 9fda0b82f419
-  - 30d21a6041f6
   - 375bbd555f4a
+  - 30d21a6041f6
+  - 9fda0b82f419
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_nn_classifier
   owner: bgruening
   revisions:
-  - 8b1b2b91f8d0
-  - 2c58b83c9bad
   - 4cc980df6265
+  - 8b1b2b91f8d0
   - 7ae443e6217d
   - cd02bf168d23
+  - 2c58b83c9bad
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
-  - 4bbaf77573ef
-  - ad7e0b4291ee
-  - 7dd3fb35904f
-  - 1dd433d2c92c
   - e10e776f2109
+  - 7dd3fb35904f
   - bb9fc9d46ea4
+  - ad7e0b4291ee
+  - 1dd433d2c92c
+  - 4bbaf77573ef
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: t_test_two_samples
diff --git a/usegalaxy.org.au/text_manipulation.yml b/usegalaxy.org.au/text_manipulation.yml
index d4494cb15..dd2c60ead 100644
--- a/usegalaxy.org.au/text_manipulation.yml
+++ b/usegalaxy.org.au/text_manipulation.yml
@@ -14,8 +14,8 @@ tools:
 - name: add_value
   owner: devteam
   revisions:
-  - 023f0a3760b3
   - 745871c0b055
+  - 023f0a3760b3
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_element_identifiers
@@ -34,14 +34,14 @@ tools:
 - name: column_maker
   owner: devteam
   revisions:
+  - 13b6f0007d9e
+  - aff5135563c6
+  - 6595517c2dd8
+  - be25c075ed54
   - 02026300aa45
   - 464b9305180e
-  - 13b6f0007d9e
   - 6e8d94597139
-  - 6595517c2dd8
   - 9cd341095afd
-  - be25c075ed54
-  - aff5135563c6
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_remove_by_header
@@ -78,11 +78,11 @@ tools:
 - name: filter_tabular
   owner: iuc
   revisions:
-  - 9cc411a62277
-  - 90f657745fea
+  - 557ec8d7087d
   - 37cde8134c6a
   - 34d29339abab
-  - 557ec8d7087d
+  - 9cc411a62277
+  - 90f657745fea
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gff3_rebase
@@ -106,29 +106,29 @@ tools:
 - name: merge_cols
   owner: devteam
   revisions:
-  - dd40b1e9eebe
   - ae7843d06f8f
+  - dd40b1e9eebe
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: query_tabular
   owner: iuc
   revisions:
-  - 3a6b78c39dca
+  - cf4397560712
   - 1ea4e668bf73
-  - 33d61c89fb8d
   - 2e8f945f7285
-  - cf4397560712
-  - 83069b38aa85
   - cf34c344508d
+  - 83069b38aa85
+  - 33d61c89fb8d
   - 623f3eb7aa48
+  - 3a6b78c39dca
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: regex_find_replace
   owner: galaxyp
   revisions:
-  - 399da6b5ec21
-  - ae8c4b2488e7
   - 503bcd6ebe4b
+  - ae8c4b2488e7
+  - 399da6b5ec21
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: replace_column_by_key_value_file
@@ -140,10 +140,10 @@ tools:
 - name: sqlite_to_tabular
   owner: iuc
   revisions:
+  - c4d18aa4ec4a
+  - f768f6183386
   - b722161a845a
   - bce29ec10b78
-  - f768f6183386
-  - c4d18aa4ec4a
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: table_compute
@@ -156,14 +156,14 @@ tools:
 - name: text_processing
   owner: bgruening
   revisions:
+  - ddf54b12c295
+  - 9ff72e942410
   - f46f0e4f75c4
+  - fbf99087e067
+  - 12615d397df7
   - a6f147a050a2
-  - d698c222f354
   - 74a8bef53a00
+  - d698c222f354
   - 86755160afbf
-  - fbf99087e067
-  - 9ff72e942410
-  - 12615d397df7
-  - ddf54b12c295
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/variant_calling.yml b/usegalaxy.org.au/variant_calling.yml
index d9f7a3236..6ba3a5c63 100644
--- a/usegalaxy.org.au/variant_calling.yml
+++ b/usegalaxy.org.au/variant_calling.yml
@@ -14,9 +14,9 @@ tools:
 - name: breseq
   owner: iuc
   revisions:
-  - 82fb5e3bb93e
-  - 85c57cc9b558
   - 0d18a3ba2d1c
+  - 85c57cc9b558
+  - 82fb5e3bb93e
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: control_freec
@@ -35,40 +35,40 @@ tools:
 - name: freebayes
   owner: devteam
   revisions:
-  - 156b60c1530f
   - ef2c525bd8cd
-  - a5937157062f
   - 57def2d7c093
   - 04fa42777df9
+  - a5937157062f
+  - 156b60c1530f
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_alnqual
   owner: iuc
   revisions:
-  - 435b157bed6d
+  - e61c9ac190ad
   - 09d6e4693887
+  - 435b157bed6d
   - 791f73caa0c8
-  - e61c9ac190ad
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_call
   owner: iuc
   revisions:
-  - 65432c3abf6c
   - e1461b5c52a0
-  - 4805fe3d8fda
-  - dfadc322b065
-  - 3b4b2121842f
-  - b11e8e9c23bf
+  - 65432c3abf6c
   - 074d44697036
   - 03627f24605f
+  - 3b4b2121842f
+  - dfadc322b065
+  - 4805fe3d8fda
+  - b11e8e9c23bf
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_filter
   owner: iuc
   revisions:
-  - 701d134358ad
   - 7dfca164d2e3
+  - 701d134358ad
   - 9cb929f21cfa
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -84,9 +84,9 @@ tools:
 - name: lofreq_viterbi
   owner: iuc
   revisions:
-  - aa35ee7f3ab2
   - dbd9f2db9ed8
   - cdaab621d454
+  - aa35ee7f3ab2
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: naive_variant_caller
@@ -105,8 +105,8 @@ tools:
 - name: snippy
   owner: iuc
   revisions:
-  - d220115f882b
   - fa016f1eea1a
+  - d220115f882b
   - 5bbf9eada9c2
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -143,21 +143,21 @@ tools:
 - name: tb_variant_filter
   owner: iuc
   revisions:
-  - 40f0591deda0
+  - ee4a90760848
   - 32f14a2723ec
-  - 3b1e7c170b10
+  - 40f0591deda0
   - e7aff4a85df5
-  - ee4a90760848
+  - 3b1e7c170b10
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbvcfreport
   owner: iuc
   revisions:
-  - adc0645b945c
-  - 4934c0ac6197
-  - 42818629ec4c
   - 02d81b994ef5
   - 9793bc5d741b
+  - 42818629ec4c
+  - adc0645b945c
+  - 4934c0ac6197
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: varscan_copynumber
diff --git a/usegalaxy.org.au/vcfbcf.yml b/usegalaxy.org.au/vcfbcf.yml
index 43dc242cf..8219ae443 100644
--- a/usegalaxy.org.au/vcfbcf.yml
+++ b/usegalaxy.org.au/vcfbcf.yml
@@ -2,41 +2,41 @@ tools:
 - name: bcftools_annotate
   owner: iuc
   revisions:
-  - 95815a0bb307
+  - e075b1be5abb
+  - 2c372041ed8c
+  - b7ea370b8f5d
   - 6a88248893c4
+  - 95815a0bb307
   - ebe5fc018e72
-  - 8a2e296c07ef
   - 265fe0f9ea64
-  - 2c372041ed8c
-  - b7ea370b8f5d
-  - e075b1be5abb
+  - 8a2e296c07ef
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_call
   owner: iuc
   revisions:
-  - 1001172b5089
-  - 07396b423218
-  - c37b684e7f4e
-  - 21687e35f066
   - 544cb432072b
   - 0fba2c15b40d
-  - b03984136ce4
   - 22637b1a55bf
+  - b03984136ce4
+  - 21687e35f066
+  - 1001172b5089
+  - 07396b423218
+  - c37b684e7f4e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_cnv
   owner: iuc
   revisions:
+  - 3a7084316a6e
   - 8627b2b383b4
   - 8ca3647c90fd
-  - 8408bffd5616
-  - 3a7084316a6e
-  - 0238f68ad641
-  - ccb83bf54de0
   - 01d6b7d6365e
+  - ccb83bf54de0
+  - 0238f68ad641
   - 143796b504eb
   - bf1f4994f104
+  - 8408bffd5616
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_concat
@@ -44,324 +44,324 @@ tools:
   revisions:
   - 05f317e50e61
   - d144af39073a
-  - 6b6c992d3a14
-  - abd489215f73
-  - 81426b3cf18b
   - f430a1ec7ee4
-  - 03e0645395d2
+  - abd489215f73
   - 9b5abbf50d23
+  - 03e0645395d2
+  - 81426b3cf18b
+  - 6b6c992d3a14
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_consensus
   owner: iuc
   revisions:
-  - e522022137f6
-  - d37e313a41be
   - 8aa352093d73
-  - 95c6f3f4c77f
-  - 1829900b5dcd
   - d3081540d175
   - 2363ef414c9b
+  - e522022137f6
   - 1171446da5db
+  - d37e313a41be
+  - 95c6f3f4c77f
+  - 1829900b5dcd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_from_vcf
   owner: iuc
   revisions:
   - 92c0aff8b53e
+  - b14ff40958cb
+  - d58d2e8c7a57
   - 09f37afb3621
+  - 348cd212dbad
   - 9b29129fb491
-  - 1137ce8efc1e
   - 012656fd329f
-  - 348cd212dbad
-  - d58d2e8c7a57
-  - b14ff40958cb
+  - 1137ce8efc1e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_to_vcf
   owner: iuc
   revisions:
-  - ecc9192912b8
-  - 367ba501b6eb
-  - 1f2183a23823
-  - de68c11034f6
   - 7291189e98b4
   - cfd81f17580b
+  - ecc9192912b8
+  - 367ba501b6eb
   - 55c0e906c14c
+  - de68c11034f6
+  - 1f2183a23823
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_csq
   owner: iuc
   revisions:
-  - 039ea3f1dea9
   - 64a8f7dae3ad
   - ae68ceb4cca3
+  - 039ea3f1dea9
   - e6f4badbe6f3
+  - 7cbf3c66d4ad
   - d237eaef451f
   - 6c790a091c7c
-  - 7cbf3c66d4ad
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_filter
   owner: iuc
   revisions:
+  - cdb7b4927742
   - 33bd9301568c
-  - 277719af4dd7
-  - 963a3635b2e1
-  - 5d6653c989cb
   - 46fcafba49ec
-  - e7452697afd9
-  - cdb7b4927742
+  - 5d6653c989cb
   - 6ea7170a016d
+  - 963a3635b2e1
+  - e7452697afd9
+  - 277719af4dd7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_gtcheck
   owner: iuc
   revisions:
   - 7b4454382d39
-  - 501bfb078342
-  - a1213a0b7b66
-  - 91c1e57d5c7f
   - a29a2f40b665
-  - 26d97cdd5410
-  - b7f0f59baa7e
   - 5a321fab1fe4
+  - b7f0f59baa7e
+  - a1213a0b7b66
+  - 26d97cdd5410
+  - 501bfb078342
+  - 91c1e57d5c7f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_isec
   owner: iuc
   revisions:
-  - c803c34361e0
-  - 5f27e814a119
-  - 15da1ddcfeff
   - 709dd8291b83
-  - 39bca000353d
-  - 97d19c008d15
-  - d7d1663559e9
   - 768d04526638
+  - 5f27e814a119
+  - 97d19c008d15
   - 81e4014fa809
+  - c803c34361e0
+  - 15da1ddcfeff
+  - d7d1663559e9
+  - 39bca000353d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_merge
   owner: iuc
   revisions:
-  - b1eba148b35b
+  - b84fda8ebef0
   - 2215287d5cc9
+  - 7ba36babba2d
+  - b1eba148b35b
+  - 85ee7e6c4204
   - b931e65638b8
   - 5b006286a458
   - 86296490704e
-  - b84fda8ebef0
-  - 7ba36babba2d
-  - 85ee7e6c4204
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_mpileup
   owner: iuc
   revisions:
+  - 9c711df3258d
+  - f506df85c652
+  - cf06b44624c7
   - 37757ffb4c5f
-  - 31ea13dfe5e6
   - 5660b21a0dbd
-  - 56556e1267de
-  - cf06b44624c7
-  - f506df85c652
-  - 9c711df3258d
-  - 0a5dcc9a8ec2
   - ce9396ddcb2b
+  - 0a5dcc9a8ec2
+  - 56556e1267de
+  - 31ea13dfe5e6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_norm
   owner: iuc
   revisions:
-  - 48291658fdf6
-  - 1ca7418e46ee
-  - a404f786a94c
-  - 19905c025d2a
   - 6deb4d549bc9
+  - 19905c025d2a
+  - 1ca7418e46ee
   - 271965b55437
   - 021693fdadaa
+  - a404f786a94c
+  - 48291658fdf6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_counts
   owner: iuc
   revisions:
-  - 5ad5d4243987
-  - dadbd61dc4cf
-  - 69d8b7567281
-  - c450406f722b
-  - 71c78e0eea52
   - 97e8145d7e30
   - f7879f1e77f9
+  - 71c78e0eea52
+  - dadbd61dc4cf
+  - c450406f722b
+  - 5ad5d4243987
+  - 69d8b7567281
   - 3f6fadf8b8ff
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_dosage
   owner: iuc
   revisions:
-  - 6cf13a657cf6
-  - d31a2e310a52
-  - 2514e684f8a3
-  - cc7f9a4e186b
   - 0fe007201caf
+  - 2514e684f8a3
   - 79f7a1acc2cd
-  - 283911fe7e1a
+  - cc7f9a4e186b
+  - 6cf13a657cf6
   - 52f9e4a660e3
+  - d31a2e310a52
+  - 283911fe7e1a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_an_ac
   owner: iuc
   revisions:
-  - a12844ca467a
-  - 026a989b7cee
   - 6963a6841d22
+  - 75ddd081f608
   - 1411bef27a75
-  - 0a62420cb9cd
+  - 026a989b7cee
   - 230e424bde67
   - 80e6e399ccd0
-  - 75ddd081f608
+  - 0a62420cb9cd
+  - a12844ca467a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_tags
   owner: iuc
   revisions:
+  - e493702b19eb
   - ba20340426fe
-  - 444e6a756c35
-  - b10d1510fa84
   - 5808f77b2bb6
-  - e493702b19eb
+  - 450a265f92e8
+  - b10d1510fa84
+  - 444e6a756c35
   - 5acfca5a76af
   - bca7ce81688f
-  - 450a265f92e8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fixploidy
   owner: iuc
   revisions:
-  - 157ffcdd3fa7
-  - 68fec03a63b7
-  - dd72ff87cfd0
   - 12152af85697
-  - 4d236c696844
-  - d52b8947b269
+  - 68fec03a63b7
   - c43399f161f4
   - f2482aa4862e
+  - d52b8947b269
+  - 4d236c696844
+  - dd72ff87cfd0
+  - 157ffcdd3fa7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_impute_info
   owner: iuc
   revisions:
-  - bc5332d47b1c
   - 75becf493cd3
+  - 8f2fc0ab30fb
   - 8dbce095986c
-  - 6f8e223f78f3
+  - 0e5d11004815
   - cbe39e530cbf
-  - 8f2fc0ab30fb
+  - bc5332d47b1c
   - 29ba253e2e05
-  - 0e5d11004815
+  - 6f8e223f78f3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_mendelian
   owner: iuc
   revisions:
-  - f544f71adb73
+  - 8f5962c43868
   - a8630d4fbaf8
-  - 88bb477f45f7
+  - 3ff5654b4e7d
   - a367a15c6de5
-  - 8f5962c43868
   - 9708e3086f32
   - e0a856def0b0
-  - 3ff5654b4e7d
+  - 88bb477f45f7
+  - f544f71adb73
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_missing2ref
   owner: iuc
   revisions:
-  - 31c096c6b156
-  - 03e30f06f15f
-  - 4ed46189d6c6
-  - 34dc0bbc7e93
-  - 6ce175385dd9
-  - 96d0145c041a
   - 8b260d252ff4
+  - 03e30f06f15f
   - 5c9729d54721
+  - 96d0145c041a
+  - 6ce175385dd9
+  - 34dc0bbc7e93
+  - 31c096c6b156
+  - 4ed46189d6c6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_setgt
   owner: iuc
   revisions:
-  - a730269af659
   - 2c4941386820
-  - a1aad8b559c6
-  - 11af7fce71cf
   - 681bdf1e22ff
-  - 09f5e45a8212
-  - 40daf124be88
   - 46eb13bc2c73
+  - 11af7fce71cf
+  - 40daf124be88
+  - 09f5e45a8212
+  - a730269af659
+  - a1aad8b559c6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_tag2tag
   owner: iuc
   revisions:
-  - 0594ea1417c8
-  - 12038f59c0f4
   - f272b8ba0983
-  - 8cb121b6a1d2
-  - 743cd1472aeb
+  - 0594ea1417c8
   - b74b8cbfc1f1
-  - 6cbb9c47795c
+  - 743cd1472aeb
   - 882b2e649602
+  - 12038f59c0f4
+  - 6cbb9c47795c
   - 3897eaadfbff
+  - 8cb121b6a1d2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query_list_samples
   owner: iuc
   revisions:
-  - cced6715f926
-  - 18cf9de1cf73
-  - dba06328556a
-  - eccb508bb678
   - 238f78e38a8b
+  - eccb508bb678
   - adee7e8b746f
+  - cced6715f926
   - a9826db86d9a
   - 2c80b0d6bde0
+  - 18cf9de1cf73
+  - dba06328556a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query
   owner: iuc
   revisions:
-  - c9935c9e8a24
-  - fdec14f69010
   - f64e7ca2efd2
-  - 9f36041495a3
-  - e53501abf992
-  - 3ce32adc55b2
   - e0ad88dec40d
+  - fdec14f69010
+  - 3ce32adc55b2
+  - e53501abf992
+  - 9f36041495a3
+  - c9935c9e8a24
   - 31a1b89eab9b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_reheader
   owner: iuc
   revisions:
-  - 2331ddcbd5aa
-  - fd3539749127
-  - 79489d5685dd
-  - 4db0695a6fc7
   - d68c43202172
-  - d43eb39b989e
+  - fd3539749127
   - 3b7b1fe7b937
+  - d43eb39b989e
+  - 4db0695a6fc7
+  - 79489d5685dd
+  - 2331ddcbd5aa
   - b7be725976b6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_roh
   owner: iuc
   revisions:
-  - 58091e1be01b
-  - 1ccf0e7fb4f6
   - b0d39ef600a7
-  - 6a636d58dfc2
-  - 78cd8b69da4c
+  - fa65af07ce7d
   - 1a989b4110da
+  - 78cd8b69da4c
+  - 1ccf0e7fb4f6
+  - 58091e1be01b
   - 5296d26b0373
-  - fa65af07ce7d
+  - 6a636d58dfc2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_stats
@@ -370,11 +370,11 @@ tools:
   - 4d3ce9dc1525
   - baa8823f8073
   - bf8325a07ce7
+  - '388983871932'
   - b17394940c7a
-  - e8af591435d1
   - 591cc8518033
+  - e8af591435d1
   - b641062a2587
-  - '388983871932'
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_view
@@ -382,47 +382,47 @@ tools:
   revisions:
   - e6b5cbbf449b
   - 38d75661c235
-  - d1f8f55f564d
-  - 3a233c8eb814
   - 59fa8742285e
-  - c2ab91a0d506
-  - 3ca3de4e5291
+  - d1f8f55f564d
   - 1a2ef636f48e
+  - 3ca3de4e5291
+  - c2ab91a0d506
+  - 3a233c8eb814
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2tsv
   owner: devteam
   revisions:
-  - e92b3c0f9224
   - 285060661b45
+  - e92b3c0f9224
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfaddinfo
   owner: devteam
   revisions:
-  - 6ea73d6151ec
   - afc0ba768690
+  - 6ea73d6151ec
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfallelicprimitives
   owner: devteam
   revisions:
-  - 57a16b310fe8
   - a8a4f94aa321
+  - 57a16b310fe8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotate
   owner: devteam
   revisions:
-  - 01e0321aca98
   - 6faa2c4c71d2
+  - 01e0321aca98
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotategenotypes
   owner: devteam
   revisions:
-  - 84959112d9a6
   - 70bc6ced57f7
+  - 84959112d9a6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbedintersect
@@ -435,36 +435,36 @@ tools:
 - name: vcfbreakcreatemulti
   owner: devteam
   revisions:
-  - 9fd5d91eb91b
   - 690b1d846263
+  - 9fd5d91eb91b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcheck
   owner: devteam
   revisions:
-  - 5e850c85ba32
   - aa8e8c96ca06
+  - 5e850c85ba32
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcombine
   owner: devteam
   revisions:
-  - 53edb91ed051
   - 1f0ba67cc85a
+  - 53edb91ed051
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcommonsamples
   owner: devteam
   revisions:
-  - f1852ecef841
   - 254f285dbaaa
+  - f1852ecef841
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfdistance
   owner: devteam
   revisions:
-  - 5822b40f3037
   - 48e458c721b3
+  - 5822b40f3037
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffilter
@@ -499,29 +499,29 @@ tools:
 - name: vcfgenotypes
   owner: devteam
   revisions:
-  - f5653ed90dfd
   - a60ae8af21a1
+  - f5653ed90dfd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfhethom
   owner: devteam
   revisions:
-  - 8254e0fe7358
   - b07ef36cf7e6
+  - 8254e0fe7358
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfleftalign
   owner: devteam
   revisions:
-  - 29f9b782727e
   - d2406f98a782
+  - 29f9b782727e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfprimers
   owner: devteam
   revisions:
-  - d226a7327946
   - 17096387c0e6
+  - d226a7327946
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfrandomsample
@@ -541,8 +541,8 @@ tools:
 - name: vcfsort
   owner: devteam
   revisions:
-  - ee60203e68d9
   - 5b7120c66efc
+  - ee60203e68d9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcftools_isec
diff --git a/usegalaxy.org.au/viral_tools.yml b/usegalaxy.org.au/viral_tools.yml
index 06370d956..15250eab7 100644
--- a/usegalaxy.org.au/viral_tools.yml
+++ b/usegalaxy.org.au/viral_tools.yml
@@ -2,7 +2,7 @@ tools:
 - name: quasitools
   owner: nml
   revisions:
-  - 18aad692772a
   - 9def47f3c1e4
+  - 18aad692772a
   tool_panel_section_label: Viral Tools
   tool_shed_url: toolshed.g2.bx.psu.edu