diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
index 97d66ba01..867d3d630 100644
--- a/automated_tool_installation_log.tsv
+++ b/automated_tool_installation_log.tsv
@@ -6141,3 +6141,4 @@ Install	1390	15/01/24 13:09:19	data_manager_pharokka	True	Shed-tools error	iuc	5
 Install	1392	15/01/24 13:12:47	data_manager_pharokka	True	Already Installed	iuc	50caca83e7c9	50caca83e7c9	Production Installation			None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1392/install_log.txt
 Install	1394	16/01/24 08:57:21	orthofinder_onlygroups	True	Tests failed	iuc	b3d25fae5389	latest	Production Testing	0/0	2/9	Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1394/install_log.txt
 Install	1396	16/01/24 09:38:04	orthofinder_onlygroups	False	Already Installed	iuc	b3d25fae5389	latest	Production Installation	9/9		Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1396/install_log.txt
+Install	1398	16/01/24 11:00:27	helixer	True	Installed	genouest	7bc75dd0f782	latest				Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1398/install_log.txt
diff --git a/requests/helixer.yml b/requests/helixer.yml
deleted file mode 100644
index cc0d15588..000000000
--- a/requests/helixer.yml
+++ /dev/null
@@ -1,5 +0,0 @@
-tools:
-  - name: helixer
-    owner: genouest
-    tool_panel_section_label: Annotation
-    
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
index fd342dcac..989e0976f 100644
--- a/staging.gvl.org.au/annotation.yml
+++ b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 4efdca267d51
   - c2ef298da409
-  - 78c75f134c16
-  - 3f3e247c053d
+  - 4efdca267d51
   - 6e9aea89e388
+  - 3f3e247c053d
+  - 78c75f134c16
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,38 +36,38 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - cd2480f35935
-  - 133f36c29579
   - fe3ca740a485
-  - 44018dd6b447
   - 4f2967b27e67
-  - 1aae04680c4b
+  - cd2480f35935
+  - f29602ae449e
   - b5d8e5475247
+  - 1aae04680c4b
+  - 44018dd6b447
   - 3e1f6f6d557e
-  - f29602ae449e
+  - 133f36c29579
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
   - dc027fa56d55
-  - 6519ebe25019
   - 7be22100e5e1
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - ca6d970d931c
-  - 09855551d713
   - 28433faa6e42
+  - 09855551d713
+  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,9 +79,9 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 8fd427007e93
   - fe48aa4ccd5e
   - 7355bbf5e05f
+  - 8fd427007e93
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -107,8 +107,8 @@ tools:
   owner: galaxyp
   revisions:
   - 9d1fbff733cf
-  - 63662ae295d6
   - d9c3016f7283
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,56 +126,56 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 14f588312c56
-  - 9f2455341fac
-  - b6b5cd37f2a2
-  - 756376aeb1ae
   - 3bbe70fef6df
+  - 756376aeb1ae
+  - 9f2455341fac
   - 582fd74dc2a1
+  - 14f588312c56
+  - b6b5cd37f2a2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - 989f7c061f35
+  - a230ea445788
   - 1691af4a0d17
+  - 73428a792541
   - 0ffe5be70caf
-  - a230ea445788
   - 30fb23d4c31c
-  - 73428a792541
-  - 989f7c061f35
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - e94187d661df
   - 563a19373357
   - 494f0bb4a993
-  - b69c46064ec7
   - 5a5ae61da69c
+  - b69c46064ec7
   - 30f08d74024f
+  - e94187d661df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 7abc5f6dd595
-  - d6c7106b7b2e
   - f77d7b685bb3
-  - f31125bb85ea
   - 1bc5a03faf2e
   - 2bba2ff070d9
+  - 7abc5f6dd595
+  - d6c7106b7b2e
+  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - fed64e676186
   - d3af38b9c7e1
-  - 52af33194019
-  - b3cf4684e9c7
   - 54961e026fe4
+  - b3cf4684e9c7
+  - 52af33194019
   - 520e30695ec3
-  - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -188,8 +188,8 @@ tools:
   owner: iuc
   revisions:
   - 2aea122fbd25
-  - 79261884facd
   - 07d7991bf205
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -201,10 +201,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
+  - 43798b4caee0
   - ef2ad746b589
   - 8b3e3657034e
-  - 43798b4caee0
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -213,6 +213,12 @@ tools:
   - de3e053bd6a5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: helixer
+  owner: genouest
+  revisions:
+  - 7bc75dd0f782
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hmmer3
   owner: iuc
   revisions:
@@ -229,9 +235,9 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
+  - 74810db257cc
   - c55643c3d813
   - 98cafcbd2578
-  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -249,8 +255,8 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
@@ -264,8 +270,8 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - 033755194fe9
   - 624606f7c996
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -291,8 +297,8 @@ tools:
   revisions:
   - bf68eb663bc3
   - eaee459f3d69
-  - 8a22554cdde2
   - a17498c603ec
+  - 8a22554cdde2
   - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -305,15 +311,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -326,21 +332,21 @@ tools:
   owner: iuc
   revisions:
   - 5c7b70713fb5
-  - cfcf33df7fc0
-  - 268d162b9c49
-  - 8f92c2b26e6d
-  - 68693743661e
   - 5b80f544c67f
   - 9473cd297a76
+  - 8f92c2b26e6d
+  - 68693743661e
   - 5a29ab10dba6
+  - 268d162b9c49
+  - cfcf33df7fc0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
   - 2b3e65a4252f
-  - 09d6806c609e
   - 5fab4f81391d
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -365,22 +371,22 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - ba6f87115e13
+  - 809dfc93d593
   - 2c68b0c38785
+  - 037a11682176
+  - 37213cf56392
   - 45083d070fb8
   - e1a9d6fd258d
-  - 200c378d85f3
-  - 37213cf56392
   - ac8250086ac3
-  - 037a11682176
-  - 809dfc93d593
+  - ba6f87115e13
+  - 200c378d85f3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction
diff --git a/staging.gvl.org.au/assembly.yml b/staging.gvl.org.au/assembly.yml
index 1bc1f17a7..640f3deab 100644
--- a/staging.gvl.org.au/assembly.yml
+++ b/staging.gvl.org.au/assembly.yml
@@ -2,25 +2,25 @@ tools:
 - name: abyss
   owner: iuc
   revisions:
-  - 890b794c997d
   - fa5259cc561b
   - 7547fcab5d19
-  - 8f1b150a2487
-  - 841084c5fc46
-  - 553bfe8bd0b5
+  - 890b794c997d
   - 0e93176640ac
   - a929ce596a34
+  - 8f1b150a2487
+  - 553bfe8bd0b5
+  - 841084c5fc46
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bandage
   owner: iuc
   revisions:
+  - 94fe43e75ddc
   - 067592b6b312
   - ddddce450736
   - b9e31c5c01c7
-  - 94fe43e75ddc
-  - b2860df42e16
   - 21e491ad532a
+  - b2860df42e16
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bellerophon
@@ -33,11 +33,11 @@ tools:
 - name: bionano_scaffold
   owner: bgruening
   revisions:
+  - a7f16f24e9a1
   - 5258e18bbe23
   - 22286dab5aa1
-  - a7f16f24e9a1
-  - faee8629b460
   - 3371c5bdc17a
+  - faee8629b460
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blobtoolkit
@@ -49,30 +49,30 @@ tools:
 - name: busco
   owner: iuc
   revisions:
-  - 94170eee0ad8
-  - f18f0b887c31
-  - bb935709506a
   - cf13a1e03e5b
-  - 2a5b8b9936bf
-  - 0d243f458b53
+  - e4bd1e99bacf
   - 1440ae06552f
   - 5ecdeca79a0d
-  - 41030a6c03b7
   - e824f5d958d0
+  - bb935709506a
+  - f18f0b887c31
+  - 2a5b8b9936bf
   - 46ae58b1d792
-  - 1e62c28ba91d
-  - 602fb8e63aa7
   - 2dd755c1c6ff
   - 4048d82f0c88
-  - e4bd1e99bacf
+  - 1e62c28ba91d
+  - 94170eee0ad8
+  - 0d243f458b53
+  - 602fb8e63aa7
+  - 41030a6c03b7
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: canu
   owner: bgruening
   revisions:
-  - 5732f959936a
-  - c5b7390290b1
   - 86f150c8019d
+  - c5b7390290b1
+  - 5732f959936a
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cap3
@@ -84,11 +84,11 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
+  - cb8dfd28c16f
   - 276f5d8712d5
   - 8d4f03b5fe9d
-  - e27815e82dd4
   - 3ee0ef312022
-  - cb8dfd28c16f
+  - e27815e82dd4
   - 1ce9b1d72ec3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -111,10 +111,10 @@ tools:
 - name: gfastats
   owner: bgruening
   revisions:
-  - 690c2caa367e
   - 3fba9c77550a
   - 3ef480892a9f
   - 5127a713de83
+  - 690c2caa367e
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hapcut2
@@ -126,21 +126,21 @@ tools:
 - name: hifiasm
   owner: bgruening
   revisions:
-  - ec9e21e9c71b
   - 41cea2aa2dce
-  - da9d8bf98802
+  - 60024a528cbd
   - 9ef6920c3089
+  - 5bec28269d95
+  - 0ee0c3089254
+  - da9d8bf98802
+  - 2061fb3b81b4
   - f3c89da3af16
+  - 71740308d412
+  - ec9e21e9c71b
+  - 6505bd37670d
   - 3f7be05a1597
   - 045c7c3d8e59
-  - 60024a528cbd
   - 5f625c63b8bc
-  - 6505bd37670d
-  - 71740308d412
-  - 2061fb3b81b4
-  - 0ee0c3089254
   - 366a11d316a7
-  - 5bec28269d95
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: links
@@ -159,38 +159,38 @@ tools:
   owner: iuc
   revisions:
   - 14ddfc8ffb93
-  - 7518ee87b53d
   - a96f3ad4e0d8
   - de387b2b2803
+  - 7518ee87b53d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: merqury
   owner: iuc
   revisions:
+  - f8113c25bc6b
   - 09c589057ee8
   - 39edec572bae
-  - f8113c25bc6b
   - 9d79beb19ac3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: meryl
   owner: iuc
   revisions:
-  - 51c2360aa807
   - 29dabd8db6f2
   - eadfd71dde37
+  - 51c2360aa807
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaspades
   owner: nml
   revisions:
+  - eb7a370f6588
   - f338e9942b27
   - fd128c111ab0
-  - e731ea24e48d
-  - eb7a370f6588
   - 606b09cc9860
-  - 3ca2d2a9068c
   - 2ecf5a570907
+  - 3ca2d2a9068c
+  - e731ea24e48d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minia
@@ -202,11 +202,11 @@ tools:
 - name: miniasm
   owner: iuc
   revisions:
-  - 73a3846701e1
-  - a7b889b90140
+  - 8b6d0d85252b
   - 80d1250bd5fd
   - 8dee0218ac7d
-  - 8b6d0d85252b
+  - a7b889b90140
+  - 73a3846701e1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitobim
@@ -218,8 +218,8 @@ tools:
 - name: novoplasty
   owner: iuc
   revisions:
-  - 7c2f5268d01c
   - 64a1c751d99b
+  - 7c2f5268d01c
   - 15200570e926
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -233,73 +233,73 @@ tools:
   owner: iuc
   revisions:
   - dfb8a4497339
-  - d256a51a656b
-  - 8fef980d48b5
-  - 511e5e3cd55e
+  - 02831bf9e95f
   - 2b16ba799da9
+  - 8fef980d48b5
   - bbe19ef04a74
-  - 02831bf9e95f
+  - 511e5e3cd55e
+  - d256a51a656b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: purge_dups
   owner: iuc
   revisions:
-  - a315c25dc813
-  - 76d4cbefff85
   - e9bd16ba5ebd
+  - 76d4cbefff85
+  - a315c25dc813
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: quast
   owner: iuc
   revisions:
-  - 59db8ea8c845
+  - 7594365c546b
   - 342a1d1fed7b
-  - 3061c8b029e5
+  - 72472698a2df
   - 6fcbee531de6
-  - 875d0f36d66f
-  - 7594365c546b
   - 675488238c96
-  - 72472698a2df
   - ebb0dcdb621a
+  - 875d0f36d66f
+  - 59db8ea8c845
+  - 3061c8b029e5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: racon
   owner: bgruening
   revisions:
-  - 78c533842eeb
-  - 39bed8de8017
-  - a199cd7ac344
-  - aa39b19ca11e
   - cd06929b224b
   - d865b62f501c
+  - aa39b19ca11e
+  - a199cd7ac344
+  - 39bed8de8017
+  - 78c533842eeb
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raven
   owner: iuc
   revisions:
+  - 2b2a352488fa
+  - 3edba9afc9bc
   - f8564b2d7f63
   - 33b7d8481a76
   - f11b994b7eb2
-  - 3edba9afc9bc
-  - 2b2a352488fa
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnaspades
   owner: iuc
   revisions:
+  - ef69617ecb42
   - 53c2bc8c2ae3
-  - e122f9101584
-  - 1d06c8b38e77
   - 378e55aeeb25
-  - ef69617ecb42
+  - 1d06c8b38e77
+  - e122f9101584
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salsa
   owner: iuc
   revisions:
-  - 9a22227bb6d0
-  - f77f7a7f3b83
   - ab5b7f6b7198
+  - f77f7a7f3b83
+  - 9a22227bb6d0
   - ba7b0f11e470
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -312,51 +312,51 @@ tools:
 - name: shovill
   owner: iuc
   revisions:
-  - f698c7604b3b
-  - 865119fcb694
-  - d9f6a00b6db7
-  - ad80238462c1
   - ee17a294d3a3
   - 196a599ec43d
   - 83ead2be47b2
+  - 865119fcb694
+  - ad80238462c1
+  - d9f6a00b6db7
+  - f698c7604b3b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: smudgeplot
   owner: galaxy-australia
   revisions:
+  - 5a0ddb4dc3a4
   - 5e0825476fb7
   - 24e471d13fe9
-  - 5a0ddb4dc3a4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_biosyntheticspades
   owner: iuc
   revisions:
-  - 1bb12736175c
-  - 7490b213baa9
   - 904bf932cf78
-  - 1fc82fe7ebef
   - 051fd2db8a27
+  - 1bb12736175c
+  - 1fc82fe7ebef
+  - 7490b213baa9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_coronaspades
   owner: iuc
   revisions:
   - 34305b013402
-  - d6e617c4e338
-  - fee85957cebe
   - 808b3a0a6716
   - ad8b536d1caa
+  - fee85957cebe
+  - d6e617c4e338
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaplasmidspades
   owner: iuc
   revisions:
-  - 21da31ed41a1
-  - b8002c3f7141
-  - 8d4b90bf9caf
   - 6b5a5842531e
+  - b8002c3f7141
   - e5a3b75a271f
+  - 21da31ed41a1
+  - 8d4b90bf9caf
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaviralspades
@@ -364,50 +364,50 @@ tools:
   revisions:
   - f1532cb33c75
   - 328aa71f0f3c
-  - 86f66ab58e14
   - 2a10645aeadd
   - 9de69775f512
+  - 86f66ab58e14
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_plasmidspades
   owner: iuc
   revisions:
+  - 6aad515a5270
+  - 85fb02c43042
   - 1708851f8804
   - e41dcb0e913b
-  - 85fb02c43042
   - 340bc17f49cf
-  - 6aad515a5270
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_rnaviralspades
   owner: iuc
   revisions:
-  - d159735a6a9f
-  - d5fb354f745d
   - 249f6a28c751
-  - b65a43f70b99
+  - d5fb354f745d
   - b3490b036c5a
+  - d159735a6a9f
+  - b65a43f70b99
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades
   owner: nml
   revisions:
-  - 33368fec3b70
-  - b7829778729f
-  - dd7ad84f3943
-  - 7897763d14ec
   - d2d1df21dfb9
+  - 7897763d14ec
+  - 33368fec3b70
   - 9006e5836729
+  - dd7ad84f3943
+  - b7829778729f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_cluster
   owner: iuc
   revisions:
+  - 189e837009c9
+  - 505a9833ab5d
   - 6f4c8ad6ea01
   - 8f631679571f
-  - 189e837009c9
   - ced385aa976d
-  - 505a9833ab5d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_consensus
@@ -415,38 +415,38 @@ tools:
   revisions:
   - 356afed970b4
   - e59bee4565b3
-  - 19bdfd1e6fe3
-  - d40ed4eb0c0e
   - 9ded6109434a
+  - d40ed4eb0c0e
+  - 19bdfd1e6fe3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_partition
   owner: iuc
   revisions:
-  - 4688ae3b49b5
   - b23249f81bc4
+  - ebd801e712bc
+  - 4688ae3b49b5
   - 6dd935e4984b
   - 80a17897564d
-  - ebd801e712bc
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_reconcile_msa
   owner: iuc
   revisions:
-  - 59bd28f6265d
   - b64696992ee9
   - b5e35a2ca4f3
-  - 937ea677d437
+  - 59bd28f6265d
   - cb1e3db43020
+  - 937ea677d437
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_subsample
   owner: iuc
   revisions:
+  - cb4768eeca3b
   - 383bb5ad32e2
-  - 05bd7504fdb2
   - 6015aa0303f2
-  - cb4768eeca3b
+  - 05bd7504fdb2
   - 2628f6790eda
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -454,28 +454,28 @@ tools:
   owner: iuc
   revisions:
   - e92675014ac9
-  - 9e3e80cc4ad4
+  - 6e26c9afd301
   - 0a3a602cd1e3
   - 8f9f06995f98
-  - 6e26c9afd301
+  - 9e3e80cc4ad4
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvet
   owner: devteam
   revisions:
+  - 08256557922f
   - 920677cd220f
   - 8d09f8be269e
   - 5da9a0e2fb2d
-  - 08256557922f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvetoptimiser
   owner: simon-gladman
   revisions:
-  - 82398ba86ba7
   - d81360ea69d8
-  - 4a53b89fa703
+  - 82398ba86ba7
   - 37d88f41c810
+  - 4a53b89fa703
   - 0e2b4e3f9ca1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/bacterial_typing.yml b/staging.gvl.org.au/bacterial_typing.yml
index 53c611a36..70bc0f495 100644
--- a/staging.gvl.org.au/bacterial_typing.yml
+++ b/staging.gvl.org.au/bacterial_typing.yml
@@ -2,8 +2,8 @@ tools:
 - name: integron_finder
   owner: iuc
   revisions:
-  - 1ae00120dd24
   - 4768f7f8e93f
+  - 1ae00120dd24
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: islandpath
@@ -15,17 +15,17 @@ tools:
 - name: mlst
   owner: iuc
   revisions:
-  - 8e8dc9a1e3e5
   - ded48b36f3b7
-  - 31812e7a1315
+  - 8e8dc9a1e3e5
   - 1f5641a52664
+  - 31812e7a1315
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sistr_cmd
   owner: nml
   revisions:
+  - 5c8ff92e38a9
   - 24a7a95867b0
   - 17fcac7ddf54
-  - 5c8ff92e38a9
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/bb_tools.yml b/staging.gvl.org.au/bb_tools.yml
index 05eb64807..35dcfef42 100644
--- a/staging.gvl.org.au/bb_tools.yml
+++ b/staging.gvl.org.au/bb_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: bbtools_bbduk
   owner: iuc
   revisions:
-  - 159b04e36791
-  - 204a131e47db
   - a9c9d768b751
+  - 204a131e47db
+  - 159b04e36791
   tool_panel_section_label: BB Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/bed.yml b/staging.gvl.org.au/bed.yml
index 4d85d9c43..11003fef9 100644
--- a/staging.gvl.org.au/bed.yml
+++ b/staging.gvl.org.au/bed.yml
@@ -2,16 +2,16 @@ tools:
 - name: bedtools
   owner: iuc
   revisions:
-  - a1a923cd89e8
-  - dde39ba9c031
+  - 589e7e57fd6d
+  - 0a5c785ac6db
+  - e19bebe96cd2
   - 07e8b80f278c
   - b28e0cfa7ba1
-  - 0a5c785ac6db
+  - a1a923cd89e8
+  - dde39ba9c031
   - a8eabd2838f6
-  - 87ee588b3d45
   - a68aa6c1204a
-  - e19bebe96cd2
-  - 589e7e57fd6d
   - ce3c7f062223
+  - 87ee588b3d45
   tool_panel_section_label: BED
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/blast.yml b/staging.gvl.org.au/blast.yml
index 995a4501c..53e238b2d 100644
--- a/staging.gvl.org.au/blast.yml
+++ b/staging.gvl.org.au/blast.yml
@@ -8,9 +8,9 @@ tools:
 - name: diamond
   owner: bgruening
   revisions:
-  - f921014aba5a
-  - 62c9df8382c2
   - e8ac2b53f262
+  - 62c9df8382c2
+  - f921014aba5a
   - 54f751e413f4
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -23,14 +23,14 @@ tools:
 - name: ncbi_blast_plus
   owner: devteam
   revisions:
+  - 2889433c7ae1
+  - 0e3cf9594bb7
   - e25d3acf6e68
   - 6f386c5dc4fb
-  - 5edc472ec434
-  - d999e774072a
-  - 0e3cf9594bb7
   - acf4e47b734c
+  - 5edc472ec434
   - a52d2d93e595
-  - 2889433c7ae1
+  - d999e774072a
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_blast_plus
@@ -42,8 +42,8 @@ tools:
 - name: taxonomy_krona_chart
   owner: crs4
   revisions:
-  - 1334cb4c6b68
   - e9005d1f3cfd
+  - 1334cb4c6b68
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: taxonomy_krona_chart
diff --git a/staging.gvl.org.au/chemicaltoolbox.yml b/staging.gvl.org.au/chemicaltoolbox.yml
index 82a783dc7..511046e60 100644
--- a/staging.gvl.org.au/chemicaltoolbox.yml
+++ b/staging.gvl.org.au/chemicaltoolbox.yml
@@ -2,13 +2,13 @@ tools:
 - name: ambertools_acpype
   owner: chemteam
   revisions:
-  - 710301bc46fa
+  - c8cdde00b105
+  - 27ee142314a9
+  - f4230f116196
   - 6ca543ec1bf8
   - da6bd1975a71
   - 095ad4d096d1
-  - 27ee142314a9
-  - c8cdde00b105
-  - f4230f116196
+  - 710301bc46fa
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: autodock_vina_prepare_box
@@ -87,8 +87,8 @@ tools:
 - name: enumerate_charges
   owner: bgruening
   revisions:
-  - 67ee76f0e497
   - 2a868592ebcb
+  - 67ee76f0e497
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fpocket
@@ -106,91 +106,91 @@ tools:
 - name: gmx_editconf
   owner: chemteam
   revisions:
+  - 79cfd9ead848
   - bfb65cb551d8
-  - 3b8a9d5ced85
-  - 88076940fa94
   - 0fac8e2afc13
-  - 79cfd9ead848
+  - 88076940fa94
+  - 3b8a9d5ced85
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_em
   owner: chemteam
   revisions:
-  - b46d4b4d995c
+  - 55918daa5651
+  - 715cd0e87781
   - f5d979cb4b54
   - d532b7e5f64b
-  - 55918daa5651
   - eb6564a60136
-  - 715cd0e87781
+  - b46d4b4d995c
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_energy
   owner: chemteam
   revisions:
-  - 97872d87ba80
-  - 5579659312e6
-  - fdf2cc80adb5
   - d2f955aea23a
   - f26afd1b7104
+  - 5579659312e6
+  - fdf2cc80adb5
+  - 97872d87ba80
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_merge_topology_files
   owner: chemteam
   revisions:
   - 319a28774da9
-  - d1d0efda35c0
   - bc31d02be922
+  - d1d0efda35c0
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_setup
   owner: chemteam
   revisions:
-  - 2c349b027a01
   - 4da9ee404eab
+  - 2c349b027a01
   - ed736e6eee39
-  - 070e3ecc3fda
   - cac1886249a2
+  - 070e3ecc3fda
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_sim
   owner: chemteam
   revisions:
-  - 525ca7c8065f
-  - da8753545526
   - c0c9a5024177
-  - 73008ef1f487
+  - 525ca7c8065f
   - d1f803b5943c
-  - 807aa4c9293d
   - 2e219a2d9327
   - f197e34c33a9
+  - da8753545526
+  - 807aa4c9293d
+  - 73008ef1f487
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_solvate
   owner: chemteam
   revisions:
+  - 2c8ed1b52bf7
+  - 27ea4e1a3f95
   - 7568ae18908a
   - c4fbab8e03c5
-  - 61094e01eff9
-  - 2c8ed1b52bf7
   - 1809414a9454
-  - 27ea4e1a3f95
+  - 61094e01eff9
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: md_converter
   owner: chemteam
   revisions:
-  - ccfbd956a2d3
-  - 730ef07b90ae
-  - ba83f0923369
   - d7ec25187599
   - 79e8ab8f1e81
+  - 730ef07b90ae
+  - ba83f0923369
+  - ccfbd956a2d3
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mdanalysis_cosine_analysis
   owner: chemteam
   revisions:
-  - 48d6a6eb438b
   - 9a3a1f698fc6
+  - 48d6a6eb438b
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: natural_product_likeness
@@ -234,10 +234,10 @@ tools:
 - name: sucos_max_score
   owner: bgruening
   revisions:
-  - d4c67ced6abc
-  - 85fad59f8168
   - 9b48456a96fe
   - bf99565cec1f
+  - 85fad59f8168
+  - d4c67ced6abc
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vmd_hbonds
diff --git a/staging.gvl.org.au/chip_seq.yml b/staging.gvl.org.au/chip_seq.yml
index 314a5b170..73ace5a8f 100644
--- a/staging.gvl.org.au/chip_seq.yml
+++ b/staging.gvl.org.au/chip_seq.yml
@@ -2,8 +2,8 @@ tools:
 - name: diffbind
   owner: bgruening
   revisions:
-  - fa56d93f7980
   - c97a786e8fb5
+  - fa56d93f7980
   - 163688bb8f73
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -29,11 +29,11 @@ tools:
 - name: macs2
   owner: iuc
   revisions:
+  - f5d67c722d67
+  - 86e2413cf3f8
   - 495a4173006f
   - 640d3af5d833
   - 424aefbd7777
-  - f5d67c722d67
-  - 86e2413cf3f8
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: macs2
@@ -45,16 +45,16 @@ tools:
 - name: rnachipintegrator
   owner: pjbriggs
   revisions:
-  - b695071de766
   - 087d9872fb0d
+  - b695071de766
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sicer
   owner: devteam
   revisions:
+  - 5c2cc3b58c7d
   - 74c9214cc8e6
   - 4a14714649b4
-  - 5c2cc3b58c7d
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sicer
diff --git a/staging.gvl.org.au/collection_operations.yml b/staging.gvl.org.au/collection_operations.yml
index 59e97c3c8..c9c147c16 100644
--- a/staging.gvl.org.au/collection_operations.yml
+++ b/staging.gvl.org.au/collection_operations.yml
@@ -2,8 +2,8 @@ tools:
 - name: bundle_collections
   owner: nml
   revisions:
-  - 705ebd286b57
   - cd6da887a5f4
+  - 705ebd286b57
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collapse_collections
@@ -25,9 +25,9 @@ tools:
 - name: split_file_to_collection
   owner: bgruening
   revisions:
-  - 0046692724f9
-  - baabc30154cd
   - 6cbe2f30c2d7
+  - baabc30154cd
+  - 0046692724f9
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unzip
diff --git a/staging.gvl.org.au/convert_formats.yml b/staging.gvl.org.au/convert_formats.yml
index 4758e8349..66c3cd9f3 100644
--- a/staging.gvl.org.au/convert_formats.yml
+++ b/staging.gvl.org.au/convert_formats.yml
@@ -8,30 +8,30 @@ tools:
 - name: biom_add_metadata
   owner: iuc
   revisions:
-  - dad9da48a09a
   - e3cbd2287f63
-  - f3a19509108a
+  - dad9da48a09a
+  - 5e1240a87bcb
+  - 367b1ed91207
   - 0b3c3ad92827
   - 4a6ee918c13a
-  - 5e1240a87bcb
   - 6ef0b5664c69
   - a3b86937ead6
-  - 367b1ed91207
+  - f3a19509108a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: biom_convert
   owner: iuc
   revisions:
-  - bd46669113b9
-  - 1b5fc03380d4
   - a4db66553a61
+  - e177a8ea0bf1
   - 33c99804a32f
+  - 501c21cce614
+  - e525f9ffb9ac
+  - bd46669113b9
+  - 1b5fc03380d4
   - 584008e574b2
-  - 54ccb7e1f49a
   - 72ed72122deb
-  - e177a8ea0bf1
-  - e525f9ffb9ac
-  - 501c21cce614
+  - 54ccb7e1f49a
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bp_genbank2gff3
@@ -50,15 +50,15 @@ tools:
 - name: fasta_to_tabular
   owner: devteam
   revisions:
-  - e7ed3c310b74
   - 7e801ab2b70e
+  - e7ed3c310b74
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_to_fasta
   owner: devteam
   revisions:
-  - 186b8d913e6c
   - 8979c288aefb
+  - 186b8d913e6c
   - 77b41c89d856
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -78,8 +78,8 @@ tools:
 - name: gfa_to_fa
   owner: iuc
   revisions:
-  - e33c82b63727
   - 8e9d604e92f4
+  - e33c82b63727
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gffcompare_to_bed
@@ -92,8 +92,8 @@ tools:
   owner: devteam
   revisions:
   - 3e436657dcd0
-  - 154d00cbbf2d
   - 4dea02886337
+  - 154d00cbbf2d
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gtftobed12
@@ -118,8 +118,8 @@ tools:
 - name: tabular_to_fasta
   owner: devteam
   revisions:
-  - 0b4e36026794
   - 0a7799698fe5
+  - 0b4e36026794
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tabular_to_fastq
@@ -132,11 +132,11 @@ tools:
 - name: thermo_raw_file_converter
   owner: galaxyp
   revisions:
-  - 26c6706bfb07
-  - 92ac8e086317
   - b9b385097f13
+  - 26c6706bfb07
   - 19e45916daf9
   - 63769c4217a7
+  - 92ac8e086317
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2maf
diff --git a/staging.gvl.org.au/deeptools.yml b/staging.gvl.org.au/deeptools.yml
index 29e59df90..c2cff3392 100644
--- a/staging.gvl.org.au/deeptools.yml
+++ b/staging.gvl.org.au/deeptools.yml
@@ -3,204 +3,204 @@ tools:
   owner: bgruening
   revisions:
   - 268e91e540ee
-  - 5f6d123679f4
-  - 29451af70c52
-  - de72ba3ed6f2
   - e821645ef8fc
-  - a1ca9bccc7f2
+  - de72ba3ed6f2
+  - 29451af70c52
   - c929a006727f
+  - a1ca9bccc7f2
+  - 5f6d123679f4
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_coverage
   owner: bgruening
   revisions:
-  - 12af64f93288
-  - bb1e4f63e0e6
-  - 0e143b4c3987
-  - 2d2cf5c1ea8a
   - 5d11599b8a7d
+  - 2d2cf5c1ea8a
   - 7a7fd0f5f15d
   - 0e49b109abc2
+  - 12af64f93288
+  - bb1e4f63e0e6
+  - 0e143b4c3987
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_pe_fragmentsize
   owner: bgruening
   revisions:
-  - 195e98217334
-  - 81b1e3e1fc6c
-  - c06951d10364
   - dc059492a995
-  - 1d848bc4585f
+  - 81b1e3e1fc6c
   - 7c1beb6d6eca
+  - 1d848bc4585f
+  - 195e98217334
+  - c06951d10364
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bigwig_compare
   owner: bgruening
   revisions:
-  - 3d211717a775
+  - 07418a30ed01
   - 71aa86af6762
-  - 26e7304d6737
   - a67ac707496a
-  - 07418a30ed01
-  - bfff7454b59a
+  - 3d211717a775
   - 93eb012d9eed
+  - bfff7454b59a
+  - 26e7304d6737
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_gc_bias
   owner: bgruening
   revisions:
-  - dd0b7398bb96
   - 29fcfd36e90a
-  - 2bc10a9ca58b
-  - 56d5b797ce84
   - 26983857c91a
-  - b8858746dc1f
   - 5be24eba848d
+  - 56d5b797ce84
+  - 2bc10a9ca58b
+  - dd0b7398bb96
+  - b8858746dc1f
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix_operations
   owner: bgruening
   revisions:
-  - 72bfafe3330b
-  - 7ef978dc1b8a
-  - e6d0bff01239
-  - c3e012dfe21f
   - 7e6bcd2e5128
+  - c3e012dfe21f
+  - 7ef978dc1b8a
+  - 72bfafe3330b
   - ee3a1b0f45f1
   - 9384cd033f30
+  - e6d0bff01239
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix
   owner: bgruening
   revisions:
-  - 9470f29702f8
+  - a60c359ec43c
   - fb9cf9c97ec4
-  - b73e213add0c
   - 514fa53b5efb
+  - 9470f29702f8
+  - b73e213add0c
+  - d9a637e83828
   - 167788df3b46
-  - a60c359ec43c
   - fd1275e01605
-  - d9a637e83828
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_correct_gc_bias
   owner: bgruening
   revisions:
-  - ca0616bb2cdf
-  - e479c7ca5570
   - c34d11ea4ba6
+  - e479c7ca5570
+  - 86febdcc4283
+  - 2c37ce318bc3
+  - ca0616bb2cdf
   - a02cfa31e9cb
   - 5bffaa8354a1
-  - 2c37ce318bc3
-  - 86febdcc4283
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bam_summary
   owner: bgruening
   revisions:
   - 78f405266706
+  - 192ef85c0b0b
   - 01fb6a7654e6
+  - 1fcb7adc39b8
   - 2d466b530754
   - 69a8621ca2f0
-  - 192ef85c0b0b
-  - 1fcb7adc39b8
   - 004aea905d4d
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bigwig_summary
   owner: bgruening
   revisions:
-  - 9ecba5e225a6
-  - db940c262830
-  - 459cfa861f0b
   - d9ce4897dbb2
   - d580d6acd1df
+  - 459cfa861f0b
   - 3c9f0c486cca
   - 137c4beed34b
+  - 9ecba5e225a6
+  - db940c262830
   - 2f9e4843f480
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_correlation
   owner: bgruening
   revisions:
-  - 32e451def88c
-  - fbe773640707
   - fd408d755394
-  - bd7db9e2f2cb
+  - fbe773640707
+  - bad3ca889618
   - 2c66e43f1c86
   - f264afa9fa6f
-  - bad3ca889618
+  - bd7db9e2f2cb
+  - 32e451def88c
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_coverage
   owner: bgruening
   revisions:
-  - 4e12ea27f788
+  - 3b9d990a0a0e
   - 7e361d147872
+  - 7fda5607e777
   - 231994413f89
-  - 3b9d990a0a0e
-  - 56bce3c82278
   - 9368fbc49c8b
-  - 7fda5607e777
+  - 56bce3c82278
+  - 4e12ea27f788
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_enrichment
   owner: bgruening
   revisions:
-  - b1779366c8e9
-  - d9114ef1c8a5
   - ce4ce3316f74
-  - 4431f39ede55
   - e65d16fb2724
   - 94ca68515826
+  - d9114ef1c8a5
+  - b1779366c8e9
+  - 4431f39ede55
   - c03c3384cd81
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_fingerprint
   owner: bgruening
   revisions:
+  - 2da482e408b8
   - d57251071381
-  - 793665fff0f8
   - 4ed32329e0ed
-  - f8fc4e5aff9d
   - 23f7c5f1fdaf
-  - 2da482e408b8
   - b88ebb3672a1
+  - f8fc4e5aff9d
+  - 793665fff0f8
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_heatmap
   owner: bgruening
   revisions:
-  - ba6efa77fb79
-  - c60570fa602f
   - a7849312d328
   - 010e58e9d822
-  - 25d830337d31
-  - 512155688d98
-  - a4dfb122e52b
   - e4c7985d4585
+  - a4dfb122e52b
+  - 512155688d98
+  - 25d830337d31
+  - ba6efa77fb79
+  - c60570fa602f
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_pca
   owner: bgruening
   revisions:
-  - 69264da0ce77
-  - c899e0ccff8c
-  - aa200e4f3939
+  - 00d869ea03a1
   - 443d9a9d6d11
   - 4d678170d29b
+  - c899e0ccff8c
+  - 69264da0ce77
   - 38e3f226248b
-  - 00d869ea03a1
+  - aa200e4f3939
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_profile
   owner: bgruening
   revisions:
   - d806504e96d9
-  - a2d70c4fd406
-  - 6662b1a8d326
   - 10301d137111
   - aac8444d6681
+  - 6662b1a8d326
   - c361b12d207a
+  - a2d70c4fd406
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/dna_metabarcoding.yml b/staging.gvl.org.au/dna_metabarcoding.yml
index a875f1aa7..ec3b6d731 100644
--- a/staging.gvl.org.au/dna_metabarcoding.yml
+++ b/staging.gvl.org.au/dna_metabarcoding.yml
@@ -9,15 +9,15 @@ tools:
 - name: obi_clean
   owner: iuc
   revisions:
-  - 12baadec7809
   - 7d16de45c021
+  - 12baadec7809
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_convert
   owner: iuc
   revisions:
-  - 4d705e3443a7
   - 374fd9feb032
+  - 4d705e3443a7
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_grep
@@ -44,8 +44,8 @@ tools:
 - name: obi_sort
   owner: iuc
   revisions:
-  - e614dcabd870
   - 12b9e285ca1c
+  - e614dcabd870
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_stat
@@ -58,8 +58,8 @@ tools:
 - name: obi_tab
   owner: iuc
   revisions:
-  - 5f7003111e32
   - 3299c7d5268f
+  - 5f7003111e32
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_uniq
diff --git a/staging.gvl.org.au/emboss.yml b/staging.gvl.org.au/emboss.yml
index c72370b98..2bdbfb936 100644
--- a/staging.gvl.org.au/emboss.yml
+++ b/staging.gvl.org.au/emboss.yml
@@ -2,9 +2,9 @@ tools:
 - name: emboss_5
   owner: devteam
   revisions:
-  - ce385837c160
+  - dba489bfcd62
   - 832c20329690
+  - ce385837c160
   - 63dd26468588
-  - dba489bfcd62
   tool_panel_section_label: EMBOSS
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/epigenetics.yml b/staging.gvl.org.au/epigenetics.yml
index 1d62e8a20..acb927c1a 100644
--- a/staging.gvl.org.au/epigenetics.yml
+++ b/staging.gvl.org.au/epigenetics.yml
@@ -2,10 +2,10 @@ tools:
 - name: bwameth
   owner: iuc
   revisions:
+  - 6da3972210ee
   - 29bdbc353f20
-  - d82648ad25a3
   - 62f5fab76dfb
-  - 6da3972210ee
+  - d82648ad25a3
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metilene
@@ -17,7 +17,7 @@ tools:
 - name: pileometh
   owner: bgruening
   revisions:
-  - 183cb55b1729
   - d6787bab7b11
+  - 183cb55b1729
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/fastafastq.yml b/staging.gvl.org.au/fastafastq.yml
index b94db23e4..a32b7ffd0 100644
--- a/staging.gvl.org.au/fastafastq.yml
+++ b/staging.gvl.org.au/fastafastq.yml
@@ -8,22 +8,22 @@ tools:
 - name: cutadapt
   owner: lparsons
   revisions:
+  - 288f97432497
   - 44e2cc14f75b
-  - 49370cb85f0f
-  - c4b82dce8335
   - c053d4cad713
+  - 660cffd8d92a
+  - 8c0175e03cee
+  - 49370cb85f0f
   - 48f587c13075
+  - c5e2e5902201
+  - 093678460093
+  - 5915ea1ec9b1
   - 4e5056fefd88
-  - 8665bcc8b847
+  - c4b82dce8335
   - de6cebe3c043
-  - 8c0175e03cee
-  - 660cffd8d92a
-  - 288f97432497
-  - 135b80fb1ac2
-  - 093678460093
-  - c5e2e5902201
   - e4691e1589d3
-  - 5915ea1ec9b1
+  - 135b80fb1ac2
+  - 8665bcc8b847
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cutadapt
@@ -35,9 +35,9 @@ tools:
 - name: fasta_clipping_histogram
   owner: devteam
   revisions:
+  - 8889eb864cef
   - 9db07fd39f85
   - f666895cbebd
-  - 8889eb864cef
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_clipping_histogram
@@ -56,8 +56,8 @@ tools:
 - name: fasta_concatenate_by_species
   owner: devteam
   revisions:
-  - 25b8736c627a
   - 717aee069681
+  - 25b8736c627a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_extract
@@ -76,9 +76,9 @@ tools:
 - name: fasta_formatter
   owner: devteam
   revisions:
+  - 859422bcb689
   - 9457a20156db
   - 516b97a23d7e
-  - 859422bcb689
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_formatter
@@ -90,15 +90,15 @@ tools:
 - name: fasta_merge_files_and_filter_unique_sequences
   owner: galaxyp
   revisions:
-  - f546e7278f04
   - 2904d46167da
+  - f546e7278f04
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_nucleotide_changer
   owner: devteam
   revisions:
-  - f81d4362b6c1
   - ec0b5076173a
+  - f81d4362b6c1
   - f773e98b26cf
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -111,10 +111,10 @@ tools:
 - name: fasta_stats
   owner: iuc
   revisions:
+  - 0dbb995c7d35
   - 56022eb50bbd
   - 9c620a950d3a
   - cd0874854f51
-  - 0dbb995c7d35
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_stats
@@ -127,8 +127,8 @@ tools:
   owner: iuc
   revisions:
   - 65b93b623c77
-  - 1d8fe9bc4cb0
   - dbf9c561ef29
+  - 1d8fe9bc4cb0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastp
@@ -161,22 +161,22 @@ tools:
 - name: fastq_manipulation
   owner: devteam
   revisions:
-  - 5b87038565bb
   - 7861f3b10c68
+  - 5b87038565bb
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_masker_by_quality
   owner: devteam
   revisions:
-  - 9dfda4e310ed
   - 9282652e7234
+  - 9dfda4e310ed
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_deinterlacer
   owner: devteam
   revisions:
-  - 03d57fea6482
   - f3936d0632cb
+  - 03d57fea6482
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_interlacer
@@ -197,8 +197,8 @@ tools:
   owner: devteam
   revisions:
   - e39cc71d3ed6
-  - 249c8393f2d4
   - 35e38452bb3f
+  - 249c8393f2d4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_splitter
@@ -211,8 +211,8 @@ tools:
   owner: devteam
   revisions:
   - 045f0e1043f7
-  - 74db4cffab1f
   - 54053ea6c77e
+  - 74db4cffab1f
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_quality_converter
@@ -224,15 +224,15 @@ tools:
 - name: fastq_stats
   owner: devteam
   revisions:
-  - f0e7deab6518
   - b1cea1b2fcd0
+  - f0e7deab6518
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer
   owner: devteam
   revisions:
-  - 33794bdb7fe0
   - b63b2bfb3ea3
+  - 33794bdb7fe0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqtofasta
@@ -245,9 +245,9 @@ tools:
   owner: devteam
   revisions:
   - d5e9e83cd3d8
-  - 567d5b3c52b1
-  - 09070cacefd8
   - 529bccd5e4a1
+  - 09070cacefd8
+  - 567d5b3c52b1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_artifacts_filter
@@ -260,8 +260,8 @@ tools:
   owner: devteam
   revisions:
   - 4bedca26c133
-  - 0b7ec11b3c7c
   - 8abdedf55101
+  - 0b7ec11b3c7c
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_barcode_splitter
@@ -275,8 +275,8 @@ tools:
   revisions:
   - 90858c306551
   - bdf1ce174e39
-  - cb1e251cac37
   - 736b8f6ee456
+  - cb1e251cac37
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_clipper
@@ -302,10 +302,10 @@ tools:
 - name: fastx_renamer
   owner: devteam
   revisions:
-  - b29d37ca9e41
-  - 02f8a17a4ebd
-  - f984bb114520
   - 3599f5451ee2
+  - f984bb114520
+  - 02f8a17a4ebd
+  - b29d37ca9e41
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_renamer
@@ -317,10 +317,10 @@ tools:
 - name: fastx_reverse_complement
   owner: devteam
   revisions:
-  - 0c2907307ba4
-  - 177f0621c266
   - 6027ef51ef91
   - e246088b6e34
+  - 177f0621c266
+  - 0c2907307ba4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_reverse_complement
@@ -332,10 +332,10 @@ tools:
 - name: fastx_trimmer
   owner: devteam
   revisions:
-  - 73194cdd4f57
-  - 61b4cedc8934
   - 547e8d00f11c
   - 377ac2829eac
+  - 73194cdd4f57
+  - 61b4cedc8934
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_trimmer
@@ -359,8 +359,8 @@ tools:
 - name: pear
   owner: iuc
   revisions:
-  - b4c6f054210a
   - 2f804526f5fd
+  - b4c6f054210a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pear
@@ -379,8 +379,8 @@ tools:
 - name: seqtk
   owner: iuc
   revisions:
-  - 4b494533146a
   - 3da72230c066
+  - 4b494533146a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seqtk
@@ -405,8 +405,8 @@ tools:
 - name: ucsc_fasplit
   owner: iuc
   revisions:
-  - 71f649c23021
   - bf04bd405d5b
+  - 71f649c23021
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fasplit
@@ -418,11 +418,11 @@ tools:
 - name: umi_tools_count
   owner: iuc
   revisions:
+  - b557acca0b56
   - e654095ab143
   - a535cf1e5da4
-  - b557acca0b56
-  - 24013bf85a6f
   - 8250ea3a1501
+  - 24013bf85a6f
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_count
@@ -440,12 +440,12 @@ tools:
 - name: umi_tools_extract
   owner: iuc
   revisions:
-  - 9fa7803d1c51
-  - 6a675c3aa610
   - 828dba98cdb4
+  - 27ac32a22ad2
   - f3759eec3018
+  - 6a675c3aa610
   - 7accf7407811
-  - 27ac32a22ad2
+  - 9fa7803d1c51
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_extract
diff --git a/staging.gvl.org.au/fastq_quality_control.yml b/staging.gvl.org.au/fastq_quality_control.yml
index bcd4bb309..51cc7a516 100644
--- a/staging.gvl.org.au/fastq_quality_control.yml
+++ b/staging.gvl.org.au/fastq_quality_control.yml
@@ -2,9 +2,9 @@ tools:
 - name: fastq_quality_filter
   owner: devteam
   revisions:
+  - 64e9a6afdd0c
   - e41385662e5e
   - 7b4468117008
-  - 64e9a6afdd0c
   - ce9cd02d5b88
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -18,13 +18,13 @@ tools:
 - name: fastqc
   owner: devteam
   revisions:
-  - f2e8552cf1d0
   - 9da02be9c6cc
-  - ff9530579d1f
   - 3d0c7bdf12f5
-  - e7b2202befea
   - 5ec9f6bceaee
+  - e7b2202befea
+  - f2e8552cf1d0
   - 2b0c9d9fc6ca
+  - ff9530579d1f
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqe
@@ -37,46 +37,46 @@ tools:
 - name: fastx_nucleotides_distribution
   owner: devteam
   revisions:
-  - 18a51655db17
   - b6b54ba71bd8
+  - 18a51655db17
   - ad116ae3f4d9
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_quality_statistics
   owner: devteam
   revisions:
-  - 59003d0543cd
   - cc0fd298cc17
   - 7306ec78632a
+  - 59003d0543cd
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filtlong
   owner: iuc
   revisions:
-  - a72af9de6bf5
   - 1f296803dfa3
+  - a72af9de6bf5
   - 8880fb74ef56
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: multiqc
   owner: iuc
   revisions:
-  - 5e33b465d8d5
-  - 9a913cdee30e
-  - 3d93dd18d9f8
   - abfd8a6544d7
-  - bf675f34b056
-  - b2f1f75d49c4
   - 1c2db0054039
-  - f7985e0479b9
+  - 5e33b465d8d5
   - 75c93c70d094
+  - b2f1f75d49c4
+  - 3d93dd18d9f8
+  - f7985e0479b9
+  - bf675f34b056
+  - 9a913cdee30e
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trim_galore
   owner: bgruening
   revisions:
-  - 084bbd8ba7b8
   - cd7e644cae1d
   - 949f01671246
+  - 084bbd8ba7b8
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/filter_and_sort.yml b/staging.gvl.org.au/filter_and_sort.yml
index 54bbfa7ed..e6d5e9548 100644
--- a/staging.gvl.org.au/filter_and_sort.yml
+++ b/staging.gvl.org.au/filter_and_sort.yml
@@ -15,8 +15,8 @@ tools:
 - name: seq_filter_by_id
   owner: peterjc
   revisions:
-  - 83a19df00eab
   - 141612f8c3e3
+  - 83a19df00eab
   - 85ef5f5a0562
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/gemini_tools.yml b/staging.gvl.org.au/gemini_tools.yml
index ab4426fe7..d104e5de7 100644
--- a/staging.gvl.org.au/gemini_tools.yml
+++ b/staging.gvl.org.au/gemini_tools.yml
@@ -16,9 +16,9 @@ tools:
 - name: gemini_annotate
   owner: iuc
   revisions:
-  - 8f53b238a360
-  - 0c8f7322f8fc
   - f2f3bc622a16
+  - 0c8f7322f8fc
+  - 8f53b238a360
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_burden
@@ -59,15 +59,15 @@ tools:
 - name: gemini_fusions
   owner: iuc
   revisions:
-  - 8151a5a0e4f6
   - 91d53f89ca54
+  - 8151a5a0e4f6
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_gene_wise
   owner: iuc
   revisions:
-  - 452104bdc655
   - d46017ddbf94
+  - 452104bdc655
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_inheritance
@@ -79,23 +79,23 @@ tools:
 - name: gemini_interactions
   owner: iuc
   revisions:
-  - 184aa4e686e2
   - 2550239feed5
+  - 184aa4e686e2
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_load
   owner: iuc
   revisions:
+  - cf61daf064fe
   - 45296e47d565
   - b2c25142267e
-  - cf61daf064fe
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_lof_sieve
   owner: iuc
   revisions:
-  - 2969a1f43b7d
   - 90021fffff70
+  - 2969a1f43b7d
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_mendel_errors
@@ -108,8 +108,8 @@ tools:
 - name: gemini_pathways
   owner: iuc
   revisions:
-  - 9199331c3421
   - 6b09debcfc49
+  - 9199331c3421
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_qc
@@ -122,50 +122,50 @@ tools:
 - name: gemini_query
   owner: iuc
   revisions:
-  - 666f60a9331a
   - da74170c55c7
   - 840fb4850be3
+  - 666f60a9331a
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_recessive_and_dominant
   owner: iuc
   revisions:
-  - 05124dc72dba
   - 86f3aac4418d
+  - 05124dc72dba
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_region
   owner: iuc
   revisions:
-  - 33efe43c1dbb
   - 601b70d10d92
+  - 33efe43c1dbb
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_roh
   owner: iuc
   revisions:
-  - 345d41f3f574
   - 93967598e18e
+  - 345d41f3f574
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_set_somatic
   owner: iuc
   revisions:
-  - ef9991a4a9a7
   - e4e2128460e3
+  - ef9991a4a9a7
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_stats
   owner: iuc
   revisions:
-  - ee894347fcd6
   - 5c9efee9cb1e
+  - ee894347fcd6
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_windower
   owner: iuc
   revisions:
-  - 8f04952b8882
   - 0c58ba91d018
+  - 8f04952b8882
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/genome_editing.yml b/staging.gvl.org.au/genome_editing.yml
index 8b48bb87e..62d2c91e4 100644
--- a/staging.gvl.org.au/genome_editing.yml
+++ b/staging.gvl.org.au/genome_editing.yml
@@ -2,35 +2,35 @@ tools:
 - name: mageck_count
   owner: iuc
   revisions:
-  - 3edbd1ff5602
   - e329d44424d7
+  - 3edbd1ff5602
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_gsea
   owner: iuc
   revisions:
-  - d46e36492bff
   - b946929d31c4
+  - d46e36492bff
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_mle
   owner: iuc
   revisions:
-  - b36c85e37a48
   - 26126538a86f
+  - b36c85e37a48
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_pathway
   owner: iuc
   revisions:
-  - 39a996d44e16
   - 9744e1124d0f
+  - 39a996d44e16
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_test
   owner: iuc
   revisions:
-  - 688a8eccea71
   - 9b4f4533c9ee
+  - 688a8eccea71
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/get_data.yml b/staging.gvl.org.au/get_data.yml
index 13c43f534..a6e3ddb70 100644
--- a/staging.gvl.org.au/get_data.yml
+++ b/staging.gvl.org.au/get_data.yml
@@ -2,49 +2,49 @@ tools:
 - name: dbbuilder
   owner: galaxyp
   revisions:
-  - b39347891609
   - 983bf725dfc2
   - c1b437242fee
   - e9df53a75f3c
+  - b39347891609
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ncbi_acc_download
   owner: iuc
   revisions:
-  - e063168e0a81
   - 28587613264f
+  - e063168e0a81
   - 1c58de56d587
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sra_tools
   owner: iuc
   revisions:
+  - 6ea73833cf67
+  - e08a7ad4378b
+  - f5ea3ce9b9b0
   - c441583adae5
+  - 734abc7ac21d
+  - 5e6237d58b0c
+  - 6591f049cf7e
+  - 83c7d564b128
   - 69ebb7f46e45
   - 4df8de2d0e48
-  - aad3885b3216
-  - e08a7ad4378b
-  - 6591f049cf7e
   - 9a776b080193
-  - 6ea73833cf67
+  - e407b9da183a
+  - 653e89d73fc4
   - 7068f48d0ef9
-  - f5ea3ce9b9b0
   - 1790dcf3c32d
-  - 653e89d73fc4
-  - 734abc7ac21d
-  - 5e6237d58b0c
+  - aad3885b3216
   - 4317d3cb6cba
-  - e407b9da183a
-  - 83c7d564b128
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unipept
   owner: galaxyp
   revisions:
-  - 34758ab8aaa4
   - 9aaa46d45472
-  - 7863f1abcdda
   - 75b3b3d0adbf
+  - 7863f1abcdda
+  - 34758ab8aaa4
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: uniprot_rest_interface
diff --git a/staging.gvl.org.au/graphdisplay_data.yml b/staging.gvl.org.au/graphdisplay_data.yml
index ddcec5004..277fcc118 100644
--- a/staging.gvl.org.au/graphdisplay_data.yml
+++ b/staging.gvl.org.au/graphdisplay_data.yml
@@ -2,15 +2,15 @@ tools:
 - name: circos
   owner: iuc
   revisions:
-  - df7356989ac1
-  - 290a11559985
-  - 740057a5126d
-  - a64dc31ab7f2
   - 7f13dc906cb9
-  - c4bde687c846
-  - 4b519282a05b
-  - fd59d783248a
   - ae9994cf526f
+  - fd59d783248a
+  - a64dc31ab7f2
+  - 4b519282a05b
+  - 290a11559985
+  - c4bde687c846
+  - df7356989ac1
+  - 740057a5126d
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: draw_stacked_barplots
@@ -35,8 +35,8 @@ tools:
   owner: devteam
   revisions:
   - 7cf5b1d072b5
-  - 867ab348287d
   - f95284aa2946
+  - 867ab348287d
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: geneiobio
@@ -48,30 +48,30 @@ tools:
 - name: ggplot2_heatmap2
   owner: iuc
   revisions:
-  - '566197475670'
-  - ca7cb0eaad62
   - 53460afd5115
   - 3b37b1b1c3a7
+  - '566197475670'
+  - ca7cb0eaad62
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_heatmap
   owner: iuc
   revisions:
+  - 391a4cc45fea
   - 10515715c940
-  - da4c086cff5b
-  - d3a9e32672ec
   - 3d059e9c2fba
-  - 391a4cc45fea
+  - d3a9e32672ec
+  - da4c086cff5b
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_point
   owner: iuc
   revisions:
-  - d0fc8b746d57
-  - 5fe1dc76176e
   - 1acf88921176
-  - 3b12bf9b4b87
   - 299307abd804
+  - 5fe1dc76176e
+  - 3b12bf9b4b87
+  - d0fc8b746d57
   - e3a675da7fd0
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -84,15 +84,15 @@ tools:
 - name: graphlan_annotate
   owner: iuc
   revisions:
-  - cf1df6b2220a
   - 5d6f8f0bef7c
+  - cf1df6b2220a
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: graphlan
   owner: iuc
   revisions:
-  - 8f62f666dcb6
   - a490b70e46fc
+  - 8f62f666dcb6
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: histogram
@@ -105,16 +105,16 @@ tools:
 - name: jbrowse
   owner: iuc
   revisions:
-  - a6e57ff585c0
-  - 836d1aa3e89a
-  - fd5dbf0f732e
+  - 2bb2e07a7a21
   - 112eb40ba6cf
   - ca2def38369c
+  - 836d1aa3e89a
+  - a6e57ff585c0
   - 4542035c1075
-  - 2bb2e07a7a21
+  - fd5dbf0f732e
   - 17359b808b01
-  - 6cd09d7b5f37
   - 667e17248bfe
+  - 6cd09d7b5f37
   - 1cfc579079a6
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -133,9 +133,9 @@ tools:
 - name: pathview
   owner: iuc
   revisions:
-  - f1691de443a7
-  - fe154a7af404
   - 03c13085aecc
+  - fe154a7af404
+  - f1691de443a7
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pe_histogram
@@ -147,8 +147,8 @@ tools:
 - name: plotly_ml_performance_plots
   owner: bgruening
   revisions:
-  - 85da91bbdbfb
   - 62e3a4e8c54c
+  - 85da91bbdbfb
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_parallel_coordinates_plot
@@ -167,9 +167,9 @@ tools:
 - name: pretext_snapshot
   owner: iuc
   revisions:
+  - 7c9417381ad5
   - 0a10fddd97d2
   - 44c66e8d21e6
-  - 7c9417381ad5
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: prop_venn
@@ -181,22 +181,22 @@ tools:
 - name: pygenometracks
   owner: iuc
   revisions:
-  - 360df4999907
+  - 326a3db8d9d1
+  - 7dd841a32245
   - 59fd173ac850
-  - 14e7c35f3d00
   - 2824d77cd8f8
+  - 360df4999907
   - a1abfa420d9d
   - 4ac4e7083b7e
-  - 326a3db8d9d1
-  - 7dd841a32245
+  - 14e7c35f3d00
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: volcanoplot
   owner: iuc
   revisions:
   - 44608d0193ed
-  - 83c573f2e73c
   - 73b8cb5bddcd
+  - 83c573f2e73c
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: weblogo3
diff --git a/staging.gvl.org.au/hca_single_cell.yml b/staging.gvl.org.au/hca_single_cell.yml
index 48e3e9ec5..787c2a488 100644
--- a/staging.gvl.org.au/hca_single_cell.yml
+++ b/staging.gvl.org.au/hca_single_cell.yml
@@ -21,8 +21,8 @@ tools:
 - name: salmon_kallisto_mtx_to_10x
   owner: ebi-gxa
   revisions:
-  - e42c217a450f
   - 88f5a0a6a818
+  - e42c217a450f
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_compute_graph
@@ -82,8 +82,8 @@ tools:
 - name: scanpy_integrate_mnn
   owner: ebi-gxa
   revisions:
-  - 9a2f72d7dbd2
   - 94697510d55f
+  - 9a2f72d7dbd2
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_multiplet_scrublet
@@ -173,8 +173,8 @@ tools:
 - name: scanpy_run_umap
   owner: ebi-gxa
   revisions:
-  - 767a675b5254
   - 0f98603d0116
+  - 767a675b5254
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_scale_data
diff --git a/staging.gvl.org.au/hicexplorer.yml b/staging.gvl.org.au/hicexplorer.yml
index 14d4b42fb..32b1dafa4 100644
--- a/staging.gvl.org.au/hicexplorer.yml
+++ b/staging.gvl.org.au/hicexplorer.yml
@@ -11,36 +11,36 @@ tools:
 - name: hicexplorer_hicfindtads
   owner: bgruening
   revisions:
-  - d404277cc87a
+  - ec4b948dc6f0
   - 5746d61f0a91
   - 78fb5e286609
-  - ec4b948dc6f0
+  - d404277cc87a
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergematrixbins
   owner: bgruening
   revisions:
   - 4d511437b1e5
+  - 03dd3c16ae4e
   - 977dc15add20
   - 9e357a8b2ec3
-  - 03dd3c16ae4e
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicpca
   owner: bgruening
   revisions:
-  - 41dbf4d162a2
-  - 3b5b54ed6392
   - 0ba4f56a3613
+  - 3b5b54ed6392
   - 77919cc3618e
+  - 41dbf4d162a2
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotmatrix
   owner: bgruening
   revisions:
-  - 5308ca68ef3d
-  - 9939786dd9c9
   - b63363075c2e
+  - 9939786dd9c9
+  - 5308ca68ef3d
   - 7babd8a46fe0
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/imaging.yml b/staging.gvl.org.au/imaging.yml
index ebaa1e6f3..b4b978e39 100644
--- a/staging.gvl.org.au/imaging.yml
+++ b/staging.gvl.org.au/imaging.yml
@@ -2,46 +2,46 @@ tools:
 - name: 2d_auto_threshold
   owner: imgteam
   revisions:
-  - 3df9f0a4bf34
   - 81f0cbca04a7
+  - 3df9f0a4bf34
   - 0c777d708acc
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_feature_extraction
   owner: imgteam
   revisions:
-  - 5791a7f65275
   - 0a53256b48c6
+  - 5791a7f65275
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_filter_segmentation_by_features
   owner: imgteam
   revisions:
-  - 6ad1d3cfdea1
   - e576b73a2e2f
+  - 6ad1d3cfdea1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_histogram_equalization
   owner: imgteam
   revisions:
-  - 70316d792fc9
   - 77f7159d775a
+  - 70316d792fc9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_simple_filter
   owner: imgteam
   revisions:
-  - dba87c4b32d3
   - f70b215d155c
+  - dba87c4b32d3
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bfconvert
   owner: imgteam
   revisions:
-  - 85edbb7a436b
   - b07f4839ca77
   - f3360fbeda64
   - 10eed33aa9b2
+  - 85edbb7a436b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: binary2labelimage
@@ -54,64 +54,64 @@ tools:
 - name: count_objects
   owner: imgteam
   revisions:
-  - b58447a2eed2
   - 5bf8eb50b280
   - 664232d2a3f7
+  - b58447a2eed2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_cellprofiler
   owner: bgruening
   revisions:
-  - e917a2424690
   - eb6c08714244
+  - e917a2424690
   - 0e4dccaafef5
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_color_to_gray
   owner: bgruening
   revisions:
-  - bad171ed1e96
   - e8f822eeb9fd
+  - bad171ed1e96
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_common
   owner: bgruening
   revisions:
+  - 6070780813d9
   - e7273daa5ae2
   - 670975e92458
-  - 6070780813d9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_convert_objects_to_image
   owner: bgruening
   revisions:
+  - ef4aed1d34c4
   - df3ad3ba5c6f
   - cdf8e3c57dae
-  - ef4aed1d34c4
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_display_data_on_image
   owner: bgruening
   revisions:
+  - 5d28ac336861
   - 6a7da2e5f696
   - 2484086dee41
-  - 5d28ac336861
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_enhance_or_suppress_features
   owner: bgruening
   revisions:
-  - f2ed92b011a9
-  - 11f177b1a59e
   - bace5a93a97c
+  - 11f177b1a59e
+  - f2ed92b011a9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_export_to_spreadsheet
   owner: bgruening
   revisions:
+  - d0178bdcd00e
   - f24c370e5ea4
   - f8fa0f6718a3
-  - d0178bdcd00e
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_gray_to_color
@@ -125,32 +125,32 @@ tools:
 - name: cp_identify_primary_objects
   owner: bgruening
   revisions:
-  - 993faa34333b
-  - 87d4d92d7487
   - b6eec6087271
+  - 87d4d92d7487
+  - 993faa34333b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_image_math
   owner: bgruening
   revisions:
-  - ff1a86a87364
   - 6100a22bf4f2
   - c09dcda1143f
+  - ff1a86a87364
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_mask_image
   owner: bgruening
   revisions:
+  - b178453ea8d1
   - 3a05117669cf
   - 667a513e67e4
-  - b178453ea8d1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_granularity
   owner: bgruening
   revisions:
-  - a1a961c46d4b
   - 2564f461de62
+  - a1a961c46d4b
   - ac5bea85a391
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -182,24 +182,24 @@ tools:
   owner: bgruening
   revisions:
   - 980aed9e8fd5
-  - 407925835dd9
   - e52c75a28c4b
+  - 407925835dd9
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_size_shape
   owner: bgruening
   revisions:
-  - acf3aa487283
-  - d85f11570109
   - 79e10d12d90a
+  - d85f11570109
+  - acf3aa487283
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_texture
   owner: bgruening
   revisions:
-  - 80b200ae516b
-  - 035a58c7f54a
   - b76841ee5560
+  - 035a58c7f54a
+  - 80b200ae516b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_overlay_outlines
@@ -211,17 +211,17 @@ tools:
 - name: cp_relate_objects
   owner: bgruening
   revisions:
+  - 8083a87d2fdf
   - 3a3033222f61
   - 48102a685037
-  - 8083a87d2fdf
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_save_images
   owner: bgruening
   revisions:
-  - 4ecf93628f97
-  - 33f4fa1413fb
   - 27edbb90ab2b
+  - 33f4fa1413fb
+  - 4ecf93628f97
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_tile
@@ -247,7 +247,7 @@ tools:
 - name: overlay_segmentation_mask
   owner: imgteam
   revisions:
-  - 22e573b7dcb1
   - 8ad39f493587
+  - 22e573b7dcb1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/ivar.yml b/staging.gvl.org.au/ivar.yml
index ca1728265..4ac3dfe53 100644
--- a/staging.gvl.org.au/ivar.yml
+++ b/staging.gvl.org.au/ivar.yml
@@ -2,88 +2,88 @@ tools:
 - name: ivar_consensus
   owner: iuc
   revisions:
-  - 3e4f434a69c6
+  - 17f911830a8c
+  - e4ee04da1c19
+  - a38934e303b9
   - 1069f6db0a0e
   - 78bbd17d0703
-  - e319b5b65879
-  - e4ee04da1c19
-  - 17f911830a8c
   - d6e72da3ec35
-  - a38934e303b9
+  - 3e4f434a69c6
   - f362150bef41
+  - e319b5b65879
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_filtervariants
   owner: iuc
   revisions:
-  - 72ddd32392cd
-  - 2b95d5c04908
-  - c88553ec696e
   - f91cfb73d369
-  - 0135f1d487a0
-  - 1ef5b6e3e09d
   - 9537184d421f
-  - 8f8df367470d
+  - c88553ec696e
+  - 0135f1d487a0
   - 7fe36019c073
+  - 8f8df367470d
+  - 2b95d5c04908
+  - 1ef5b6e3e09d
+  - 72ddd32392cd
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_getmasked
   owner: iuc
   revisions:
-  - 2cf4a1cafc16
   - ad0dc9f4c9e2
-  - fafb3d685fa9
+  - 2cf4a1cafc16
   - d7e79eb3bcb3
+  - fafb3d685fa9
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_removereads
   owner: iuc
   revisions:
-  - bd2a7d1316b9
-  - ee29337f905c
-  - 3d18f8c3c0f6
+  - ee2beb764a7b
   - 8c05afb547fa
   - 69797fa273c3
-  - 8d36959b000d
-  - 94df24c6bc00
+  - ee29337f905c
+  - 6a1515bb0687
   - 43aac8d29685
-  - ee2beb764a7b
+  - 3d18f8c3c0f6
   - 28a6f1908fcc
-  - 7f1cfa4c0e32
-  - 6a1515bb0687
+  - bd2a7d1316b9
   - 9eaadf03e0df
+  - 7f1cfa4c0e32
+  - 8d36959b000d
+  - 94df24c6bc00
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_trim
   owner: iuc
   revisions:
+  - e3bb03cf207a
+  - 5671e1d3d5ee
+  - 364f4ffec275
+  - c092052ed673
   - 9f978da6528a
+  - 5d6ed46cc101
   - cb903c9dc33d
+  - bcaa0d571ce2
   - d37ede8589b2
   - 8858fa037a15
-  - 5d6ed46cc101
   - 0893a1dbb807
-  - c092052ed673
-  - 5671e1d3d5ee
   - db536ad45f28
-  - 364f4ffec275
-  - e3bb03cf207a
-  - bcaa0d571ce2
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_variants
   owner: iuc
   revisions:
-  - 38b91a3190cd
-  - 584beffa972b
+  - ed28dd32141c
+  - 12d66d0d05ac
+  - 49236b03e4fd
   - 045d6d00f606
-  - 3b6a16d82c1b
   - f95f403841ad
-  - ed28dd32141c
   - e1a015876aa9
+  - 584beffa972b
+  - 38b91a3190cd
+  - 3b6a16d82c1b
   - 230b05597996
-  - 49236b03e4fd
   - c5c9f02b6167
-  - 12d66d0d05ac
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/join_subtract_and_group.yml b/staging.gvl.org.au/join_subtract_and_group.yml
index de5b70d1d..eb1a33e33 100644
--- a/staging.gvl.org.au/join_subtract_and_group.yml
+++ b/staging.gvl.org.au/join_subtract_and_group.yml
@@ -2,18 +2,18 @@ tools:
 - name: datamash_reverse
   owner: iuc
   revisions:
-  - 17e3b698dd52
   - 0f1724dd59d2
-  - f198773344e4
   - b8a457820315
+  - 17e3b698dd52
+  - f198773344e4
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: datamash_transpose
   owner: iuc
   revisions:
   - ac092723240d
-  - ba0c40780ecf
   - a513e3fbb4c5
+  - ba0c40780ecf
   - 374cb875d38a
   - 22c2a1ac7ae3
   tool_panel_section_label: Join, Subtract and Group
diff --git a/staging.gvl.org.au/machine_learning.yml b/staging.gvl.org.au/machine_learning.yml
index 6b89a991a..0385e4fa8 100644
--- a/staging.gvl.org.au/machine_learning.yml
+++ b/staging.gvl.org.au/machine_learning.yml
@@ -3,98 +3,98 @@ tools:
   owner: bgruening
   revisions:
   - 772e0e89fc68
-  - 522137aaa9c4
   - 66d7efc06000
+  - 522137aaa9c4
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_model_config
   owner: bgruening
   revisions:
-  - f22a9297440f
   - 4d81e3e2fb63
   - 8a794e6d3388
+  - f22a9297440f
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_train_and_eval
   owner: bgruening
   revisions:
-  - f1b9a42d6809
-  - 818f9b69d8a0
   - e1317b5502fa
   - b6ef6d0cb6b7
   - 2af1346e68c9
+  - f1b9a42d6809
+  - 818f9b69d8a0
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ml_visualization_ex
   owner: bgruening
   revisions:
+  - 1588f9076e32
   - 8334dc98c48e
   - c80db5d6fd8c
   - 947c2eacccb8
-  - 1588f9076e32
   - 05143043ca13
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: model_prediction
   owner: bgruening
   revisions:
-  - 25b46af53232
-  - 1552b8cb4a94
   - 83228baae3c5
+  - 1552b8cb4a94
   - 9991c4ddde14
+  - 25b46af53232
   - 29e4122c90de
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_ensemble
   owner: bgruening
   revisions:
-  - f3dfa4bdf87e
+  - a07ab242b0b5
   - 53616c8b0865
+  - f3dfa4bdf87e
+  - 1a53edc4b438
   - 841a6cc5fc58
   - 060ca94ac049
-  - a07ab242b0b5
-  - 1a53edc4b438
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_generalized_linear
   owner: bgruening
   revisions:
-  - 2fc89dcd41c8
+  - 927586a18553
   - 91c4e3331208
   - d4808d5b83da
-  - dc4b5fd604a6
+  - 2fc89dcd41c8
   - 40f4447733b2
-  - 927586a18553
+  - dc4b5fd604a6
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_searchcv
   owner: bgruening
   revisions:
+  - c6ae57f774c6
   - 7626ea9c2e1b
-  - 301e07345c93
-  - 36e8d6d5d01b
   - 25ab6b4e376e
+  - 301e07345c93
   - e5a5ad882f1f
-  - c6ae57f774c6
+  - 36e8d6d5d01b
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_svm_classifier
   owner: bgruening
   revisions:
-  - 4ed102b922cb
   - f9639b488779
-  - 02d2be90dedb
-  - b7c3e9a3b954
   - 80852884053f
   - 0630258dcf35
+  - 4ed102b922cb
+  - b7c3e9a3b954
+  - 02d2be90dedb
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_to_categorical
   owner: bgruening
   revisions:
-  - 61634a87efc7
-  - ec69cbe34b73
   - caeb57858702
+  - ec69cbe34b73
   - 14180f9c831e
+  - 61634a87efc7
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/mapping.yml b/staging.gvl.org.au/mapping.yml
index 7e74127a1..74e4296ce 100644
--- a/staging.gvl.org.au/mapping.yml
+++ b/staging.gvl.org.au/mapping.yml
@@ -2,15 +2,15 @@ tools:
 - name: bowtie2
   owner: devteam
   revisions:
+  - 03e9b2fbc005
   - 017aba02828d
+  - f6877ad76b00
   - cd659e8cc5fa
-  - 3ba8d4563129
-  - 749c918495f7
   - a6d65b0c67af
-  - 937aa69e715f
-  - 03e9b2fbc005
-  - f6877ad76b00
+  - 749c918495f7
   - 17062a0decb7
+  - 3ba8d4563129
+  - 937aa69e715f
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bowtie_wrappers
@@ -22,18 +22,18 @@ tools:
 - name: bwa_mem2
   owner: iuc
   revisions:
-  - bfaa0d22c2e4
   - b4a22d90cce9
+  - bfaa0d22c2e4
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bwa
   owner: devteam
   revisions:
-  - 64f11cf59c6e
   - dfd8b7f78c37
+  - 64f11cf59c6e
+  - 53646aaaafef
   - e188dc7a68e6
   - 3fe632431b68
-  - 53646aaaafef
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lastz_paired_reads
@@ -45,43 +45,43 @@ tools:
 - name: lastz
   owner: devteam
   revisions:
-  - e7f19d6a9af8
-  - 37b497aa133f
   - 60afcc2c1d05
-  - 2ff111fac1d7
   - 3e1ea2facca6
+  - 2ff111fac1d7
+  - e7f19d6a9af8
+  - 37b497aa133f
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minimap2
   owner: iuc
   revisions:
-  - f54f5baedfdd
+  - 6b1e195506a3
   - 11a0d50a54e6
+  - c0c2d0941de8
+  - 3f4d6399997b
   - 037c6e54df11
-  - 77b2770508f6
-  - b3eab4b67562
-  - 6b1e195506a3
   - 09b53c1d4ab1
-  - 3f4d6399997b
-  - c0c2d0941de8
-  - 8c6cd2650d1f
+  - f54f5baedfdd
+  - b3eab4b67562
   - be1d967337e4
+  - 8c6cd2650d1f
+  - 77b2770508f6
   - 53c0b7a1a0c3
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rna_starsolo
   owner: iuc
   revisions:
+  - e403d27e8f24
   - 13022c3d3076
-  - ec9cbd6b9a49
-  - 178bdbdb6d24
   - 79b885ce78d7
-  - e403d27e8f24
-  - b8f5f6e87f5c
   - 5ef7ec16b04f
+  - 178bdbdb6d24
+  - 00fbfac99d39
   - 1cd2511a396e
   - 9ee34ba73ebf
-  - 00fbfac99d39
+  - b8f5f6e87f5c
+  - ec9cbd6b9a49
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: star_fusion
diff --git a/staging.gvl.org.au/metagenomic_analysis.yml b/staging.gvl.org.au/metagenomic_analysis.yml
index 64a28567e..47785e819 100644
--- a/staging.gvl.org.au/metagenomic_analysis.yml
+++ b/staging.gvl.org.au/metagenomic_analysis.yml
@@ -2,8 +2,8 @@ tools:
 - name: cat_bins
   owner: iuc
   revisions:
-  - 0094893f5001
   - 18676df0cb3a
+  - 0094893f5001
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cat_prepare
@@ -34,98 +34,98 @@ tools:
 - name: dada2_assigntaxonomyaddspecies
   owner: iuc
   revisions:
-  - 7c2100246a2f
-  - 5b5a7af9fbb4
   - 63f86089423e
   - 76d3d2b10738
+  - 5b5a7af9fbb4
+  - 7c2100246a2f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_dada
   owner: iuc
   revisions:
-  - 1c35dadbe76f
   - 96336c6a2bb7
   - 18a502a9d287
+  - 1c35dadbe76f
   - 84fd33a60b35
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_filterandtrim
   owner: iuc
   revisions:
-  - 34e55239e68b
-  - f732237754fc
   - addaf9d22850
+  - f732237754fc
   - a9f4a217dcd6
+  - 34e55239e68b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_learnerrors
   owner: iuc
   revisions:
-  - 04c15826a0b8
-  - 8c202e741d68
   - 75403243703a
+  - 8c202e741d68
+  - 04c15826a0b8
   - 0776d824d896
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_makesequencetable
   owner: iuc
   revisions:
+  - e96bbb9e24ea
+  - 43c99742158b
   - 8470de786d47
   - 1c9b3bcd4261
-  - 43c99742158b
-  - e96bbb9e24ea
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_mergepairs
   owner: iuc
   revisions:
-  - 306a40d4bb8f
   - 84743da21318
   - 1d75bd0595e2
   - 5c865a382933
+  - 306a40d4bb8f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotcomplexity
   owner: iuc
   revisions:
-  - 78faebd0879c
   - 555ccac8a4c5
-  - 8daf4564ccda
   - ac72310b038a
+  - 78faebd0879c
+  - 8daf4564ccda
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotqualityprofile
   owner: iuc
   revisions:
-  - f947b4bb5107
+  - a58e4a43f49c
   - 7b8cb2b02978
+  - f947b4bb5107
   - d60df8727f59
-  - a58e4a43f49c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_removebimeradenovo
   owner: iuc
   revisions:
   - 04144473e59e
+  - 7f3b59dee073
   - 1bc3657cd694
   - 7136e9ab70db
-  - 7f3b59dee073
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_seqcounts
   owner: iuc
   revisions:
-  - d943081510da
   - 0a1224c4b781
-  - 9058d8943303
+  - d943081510da
   - 19299bb1c6af
+  - 9058d8943303
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasttree
   owner: iuc
   revisions:
-  - e005e659ae21
   - c7e73acfa3eb
+  - e005e659ae21
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gtdbtk_classify_wf
@@ -139,16 +139,16 @@ tools:
 - name: hifiasm_meta
   owner: galaxy-australia
   revisions:
-  - 15dbb444df71
   - fa35f1106d3e
+  - 15dbb444df71
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_genefamilies_genus_level
   owner: iuc
   revisions:
-  - 6c84982ee6f7
-  - 6d364c65c946
   - 654548ae1357
+  - 6d364c65c946
+  - 6c84982ee6f7
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_join_tables
@@ -168,17 +168,17 @@ tools:
 - name: humann2_renorm_table
   owner: iuc
   revisions:
-  - b084117133af
-  - c6676a890f50
   - d77397f09da1
+  - c6676a890f50
+  - b084117133af
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_unpack_pathways
   owner: iuc
   revisions:
-  - cad93abecac9
-  - 7f208f1eb64f
   - 9704f1a3b32d
+  - 7f208f1eb64f
+  - cad93abecac9
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2
@@ -190,18 +190,18 @@ tools:
 - name: humann_regroup_table
   owner: iuc
   revisions:
+  - 31c6d107e7a5
   - 79706f10d680
   - e88b731dad59
-  - 31c6d107e7a5
   - c409a495841f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rename_table
   owner: iuc
   revisions:
-  - 714d5a28cc5c
-  - d24841f5c3d2
   - 094ad9c068af
+  - d24841f5c3d2
+  - 714d5a28cc5c
   - 71ea608ddfa3
   - 172920f67a84
   tool_panel_section_label: Metagenomic Analysis
@@ -209,41 +209,41 @@ tools:
 - name: humann_renorm_table
   owner: iuc
   revisions:
+  - 12fb63b5f63f
+  - a4d7148ccee4
   - d7e9a3c41657
   - 4137b492233e
-  - a4d7148ccee4
-  - 12fb63b5f63f
   - a293a742194f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_split_stratified_table
   owner: iuc
   revisions:
-  - 6fcb8ac37a3e
   - cf87759761eb
-  - 97f7bb0851e7
+  - 6fcb8ac37a3e
   - 64bc7acc22a9
-  - 75bedfb2078b
   - e2c71b852aba
+  - 75bedfb2078b
+  - 97f7bb0851e7
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_unpack_pathways
   owner: iuc
   revisions:
-  - 2d35528d2141
-  - 4033827c76b8
-  - 5e5a999ffaa9
   - 080ea153677c
+  - 5e5a999ffaa9
+  - 2d35528d2141
   - c82508e76ad1
+  - 4033827c76b8
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann
   owner: iuc
   revisions:
-  - 6b7622dda516
   - fc6c328c292f
-  - 2cd76b089570
   - 95bf7479d53c
+  - 6b7622dda516
+  - 2cd76b089570
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan5
@@ -309,9 +309,9 @@ tools:
 - name: kraken2
   owner: iuc
   revisions:
+  - 328c607150ff
   - 4a9da2b6c2e3
   - e674066930b2
-  - 328c607150ff
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken2tax
@@ -350,8 +350,8 @@ tools:
 - name: kraken
   owner: devteam
   revisions:
-  - 8ba2174315aa
   - aec58624706f
+  - 8ba2174315aa
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krakentools_extract_kraken_reads
@@ -389,18 +389,18 @@ tools:
   owner: iuc
   revisions:
   - e073891b2afc
-  - 4fd3b5d8706b
   - 2cff76cf35c6
-  - 0270541aaf46
+  - 4fd3b5d8706b
   - 27250f92a01a
+  - 0270541aaf46
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metabat2
   owner: iuc
   revisions:
-  - 76bc4efa1aeb
-  - eb50e7eca3dc
   - 708abf08a626
+  - eb50e7eca3dc
+  - 76bc4efa1aeb
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metadegalaxy_pear_stats
@@ -473,13 +473,13 @@ tools:
 - name: metaphlan
   owner: iuc
   revisions:
-  - a92a632c4d9b
-  - 2131d7dca455
+  - b89b0765695d
+  - ff8f55893e7d
   - 6dee4abadccb
+  - 2131d7dca455
   - 1a6cdf55390f
-  - b89b0765695d
+  - a92a632c4d9b
   - a16313517e55
-  - ff8f55893e7d
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metawrapmg_binning
@@ -551,8 +551,8 @@ tools:
 - name: picrust_compare_biom
   owner: iuc
   revisions:
-  - 9168545e09df
   - 0ba7dfaa941d
+  - 9168545e09df
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_format_tree_and_trait_table
@@ -602,12 +602,12 @@ tools:
   owner: nml
   revisions:
   - 4d83eccf5f81
-  - be818ae858e4
+  - 3b22de20bd4b
+  - 141afacabcfa
   - aeaa20b96ef2
   - 2fd4d4c9c5c2
-  - 3b22de20bd4b
   - 4b9a8031ab74
-  - 141afacabcfa
+  - be818ae858e4
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: usearch_cluster_otus
@@ -637,8 +637,8 @@ tools:
 - name: vsearch
   owner: iuc
   revisions:
-  - 9495df9dd6ef
   - 576963db5f1b
+  - 9495df9dd6ef
   - b3c7199d8786
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/mothur.yml b/staging.gvl.org.au/mothur.yml
index 3cbe17e3d..32bee58c0 100644
--- a/staging.gvl.org.au/mothur.yml
+++ b/staging.gvl.org.au/mothur.yml
@@ -707,8 +707,8 @@ tools:
 - name: mothur_sub_sample
   owner: iuc
   revisions:
-  - 67cb43432196
   - e866e31f6da3
+  - 67cb43432196
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_qual
@@ -732,8 +732,8 @@ tools:
 - name: mothur_summary_single
   owner: iuc
   revisions:
-  - 72be09dfd803
   - 2344ed181ae6
+  - 72be09dfd803
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_tax
diff --git a/staging.gvl.org.au/multiple_alignments.yml b/staging.gvl.org.au/multiple_alignments.yml
index d1fbe621c..5c22c0521 100644
--- a/staging.gvl.org.au/multiple_alignments.yml
+++ b/staging.gvl.org.au/multiple_alignments.yml
@@ -2,37 +2,37 @@ tools:
 - name: cactus_cactus
   owner: galaxy-australia
   revisions:
-  - 80f03df2e2ce
-  - 48c13389050d
-  - 94b8c6013083
+  - 9eeb13a92d79
   - 9baa871cb1d1
+  - 6ae5a7b5a0a2
   - 9422c5a87ee2
+  - bdfbaf0c10aa
+  - 2263989660f5
+  - 94b8c6013083
+  - 48c13389050d
   - cd07731e4434
-  - 9eeb13a92d79
-  - 6ae5a7b5a0a2
+  - 80f03df2e2ce
   - 8b67dd48fec1
   - a74dbfee5a86
-  - 2263989660f5
-  - bdfbaf0c10aa
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cactus_export
   owner: galaxy-australia
   revisions:
-  - be78f13134e2
   - '764845535798'
-  - d7ce0ec78e51
-  - 3ff17bad4006
-  - aaa0d6a8b808
-  - bc3831dd65c1
+  - d390fe1567dc
   - 2e093badc689
-  - 4a60927aaca5
+  - 3ff17bad4006
   - c18157c68134
+  - f14193ec1f50
+  - d7ce0ec78e51
+  - be78f13134e2
   - fc2e49f91e52
   - 5abf2c2249aa
-  - d390fe1567dc
-  - f14193ec1f50
+  - 4a60927aaca5
+  - bc3831dd65c1
   - f0af8936ed41
+  - aaa0d6a8b808
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cdhit
@@ -44,15 +44,15 @@ tools:
 - name: chromeister
   owner: iuc
   revisions:
-  - e483be1014b6
   - b768cc4cca40
+  - e483be1014b6
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: clustalw
   owner: devteam
   revisions:
-  - 5b097fde95dd
   - d6694932c5e0
+  - 5b097fde95dd
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gecko
@@ -64,19 +64,19 @@ tools:
 - name: mafft
   owner: rnateam
   revisions:
-  - c5908940967d
+  - f1a5908ea2cb
+  - 6f28e90db932
   - a65296ffb4a0
   - 15974dd17515
   - f0d493f8f84f
-  - 6f28e90db932
-  - f1a5908ea2cb
+  - c5908940967d
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_delta_filter
   owner: iuc
   revisions:
-  - fbca557a4847
   - b3acbb3a6af0
+  - fbca557a4847
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_dnadiff
@@ -89,8 +89,8 @@ tools:
 - name: mummer_mummer
   owner: iuc
   revisions:
-  - bcd65de9725b
   - 48823c9635a4
+  - bcd65de9725b
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummerplot
@@ -103,8 +103,8 @@ tools:
 - name: mummer_nucmer
   owner: iuc
   revisions:
-  - 636b049e6141
   - e18267f90096
+  - 636b049e6141
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_show_coords
diff --git a/staging.gvl.org.au/nanopore.yml b/staging.gvl.org.au/nanopore.yml
index 3c1c3d716..4c0cdb95e 100644
--- a/staging.gvl.org.au/nanopore.yml
+++ b/staging.gvl.org.au/nanopore.yml
@@ -8,42 +8,42 @@ tools:
 - name: medaka_consensus_pipeline
   owner: iuc
   revisions:
-  - a7228a7ea146
-  - 79e9a869f40e
+  - 72b5e9dda577
   - cb34f00cc10f
-  - 0e9e7fcdd543
+  - 79e9a869f40e
   - fc8804320156
-  - 72b5e9dda577
+  - 0e9e7fcdd543
+  - a7228a7ea146
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_consensus
   owner: iuc
   revisions:
   - db25ec99c3ea
-  - fa11aa8103b2
   - 18505fe2bdb1
   - d6cddc06aeae
+  - fa11aa8103b2
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_variant
   owner: iuc
   revisions:
-  - cc36773a3681
-  - eb746fa6f514
-  - 19f3b583a9b3
-  - edf6d4003fad
-  - 222669c4afb6
   - 43815fa60f3a
+  - 222669c4afb6
   - 0f5f4a208660
-  - ec699520444c
   - 2bf63b38ee9b
+  - edf6d4003fad
+  - 19f3b583a9b3
+  - cc36773a3681
+  - eb746fa6f514
+  - ec699520444c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanocompore_sampcomp
   owner: iuc
   revisions:
-  - b833eff63b10
   - c0fb573c1e8d
+  - b833eff63b10
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanofilt
@@ -57,55 +57,55 @@ tools:
   revisions:
   - 0f1c34698076
   - 645159bcee2d
-  - a3c4fe6f49ab
   - edbb6c5028f5
+  - a3c4fe6f49ab
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_eventalign
   owner: bgruening
   revisions:
-  - 3b6f94fc7e1d
   - d219b6d8158a
   - 85a394edc247
+  - 3b6f94fc7e1d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_methylation
   owner: bgruening
   revisions:
-  - 90a922f32523
   - a8d4be409446
+  - 90a922f32523
   - be95355fef8d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_polya
   owner: bgruening
   revisions:
-  - d376944466bf
-  - 449e9aeded2d
   - 4857d5bcce52
+  - 449e9aeded2d
+  - d376944466bf
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_variants
   owner: bgruening
   revisions:
-  - bec636361cfd
   - a3afc5f0a96c
+  - bec636361cfd
   - de5b3d8f5b90
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: porechop
   owner: iuc
   revisions:
-  - 543cbeef3949
-  - 5f76b20953e5
   - 93d623d9979c
+  - 5f76b20953e5
+  - 543cbeef3949
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_events
   owner: iuc
   revisions:
-  - 1d835c691480
   - 28d7819c312f
+  - 1d835c691480
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_extract
@@ -130,8 +130,8 @@ tools:
 - name: poretools_occupancy
   owner: iuc
   revisions:
-  - 336791b5665f
   - 338d15b8d6fb
+  - 336791b5665f
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_qualdist
@@ -150,8 +150,8 @@ tools:
 - name: poretools_squiggle
   owner: iuc
   revisions:
-  - 34553d0caa5e
   - ce8af9373061
+  - 34553d0caa5e
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_stats
diff --git a/staging.gvl.org.au/none.yml b/staging.gvl.org.au/none.yml
index e52931f5c..d44b4e554 100644
--- a/staging.gvl.org.au/none.yml
+++ b/staging.gvl.org.au/none.yml
@@ -14,8 +14,8 @@ tools:
 - name: bcftools_plugin_color_chrs
   owner: iuc
   revisions:
-  - 4e85a3a5dbd1
   - 71186bb66ca2
+  - 4e85a3a5dbd1
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_frameshifts
@@ -60,9 +60,9 @@ tools:
 - name: data_manager_bowtie2_index_builder
   owner: devteam
   revisions:
+  - 1586b111d2a3
   - 9dd107db92c2
   - 83da94c0e4a6
-  - 1586b111d2a3
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_build_bracken_database
@@ -76,15 +76,15 @@ tools:
   revisions:
   - 2f27f3b86827
   - e4b4837f06f5
-  - edacc4bcd3cb
   - ed1518ce2237
+  - edacc4bcd3cb
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwa_mem_index_builder
   owner: devteam
   revisions:
-  - 9e993022c762
   - 46066df8813d
+  - 9e993022c762
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwameth_index_builder
@@ -103,23 +103,23 @@ tools:
 - name: data_manager_dada2
   owner: iuc
   revisions:
-  - 48a42ca61006
-  - 5711fc06a63e
   - 38ccd4589990
+  - 5711fc06a63e
+  - 48a42ca61006
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_diamond_database_builder
   owner: bgruening
   revisions:
-  - 4a08b7b76b78
   - 5a0d0bee4f8d
+  - 4a08b7b76b78
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_eggnog_mapper_abspath
   owner: galaxyp
   revisions:
-  - fcb8bdd124f4
   - 81a286e4c5a2
+  - fcb8bdd124f4
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_fetch_busco
@@ -145,17 +145,17 @@ tools:
 - name: data_manager_gatk_picard_index_builder
   owner: devteam
   revisions:
-  - 6287d0ee459e
   - 9a40272f56d0
+  - 6287d0ee459e
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gemini_database_downloader
   owner: iuc
   revisions:
+  - 5bcf0e24f42c
+  - 172815da3d41
   - 27a6a256cd23
   - b4b2b284230a
-  - 172815da3d41
-  - 5bcf0e24f42c
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gtdbtk_database_installer
@@ -180,8 +180,8 @@ tools:
 - name: data_manager_humann_database_downloader
   owner: iuc
   revisions:
-  - 19bbd19b74b3
   - fea85c467896
+  - 19bbd19b74b3
   - 87febc68b45b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -214,9 +214,9 @@ tools:
   owner: iuc
   revisions:
   - 4ba60cb14cb0
-  - 0cb27ea69dc1
-  - 9c43baa60906
   - 5fe20c915fa6
+  - 9c43baa60906
+  - 0cb27ea69dc1
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mitos
@@ -237,9 +237,9 @@ tools:
   owner: iuc
   revisions:
   - df30a2f1db55
-  - ed7a967cb11b
   - 29c738066906
   - 6e24e79d3d69
+  - ed7a967cb11b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_pharokka
@@ -252,15 +252,15 @@ tools:
   owner: devteam
   revisions:
   - 3e4d45aca422
-  - 1865e693d8b2
   - ad90c2da4f38
+  - 1865e693d8b2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_snpeff
   owner: iuc
   revisions:
-  - d107d20dc6bd
   - def511e8e005
+  - d107d20dc6bd
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_sortmerna_database_downloader
@@ -272,17 +272,17 @@ tools:
 - name: data_manager_star_index_builder
   owner: iuc
   revisions:
-  - c520a52b5174
-  - d63c1442407f
   - 64deddb6a8ec
+  - d63c1442407f
+  - c520a52b5174
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_twobit_builder
   owner: devteam
   revisions:
   - 9946bc39c834
-  - 625fd9476402
   - 94a50db37d1a
+  - 625fd9476402
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_vep_cache_downloader
@@ -1033,16 +1033,16 @@ tools:
 - name: rdock_rbcavity
   owner: bgruening
   revisions:
-  - 7e5c2e4bc227
   - 744a777e9f90
+  - 7e5c2e4bc227
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rdock_rbdock
   owner: bgruening
   revisions:
-  - c362398df83b
   - e4b7d1507a75
   - a22969b08177
+  - c362398df83b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rsem_datatypes
diff --git a/staging.gvl.org.au/phylogenetics.yml b/staging.gvl.org.au/phylogenetics.yml
index c99f7d84d..755931916 100644
--- a/staging.gvl.org.au/phylogenetics.yml
+++ b/staging.gvl.org.au/phylogenetics.yml
@@ -33,63 +33,63 @@ tools:
 - name: hyphy_absrel
   owner: iuc
   revisions:
-  - f04a1264e2a2
+  - f73435dc282b
+  - b89cac5156ec
+  - c78f3d7dd1db
+  - d7c7ef3353fe
+  - 8834daeb9892
   - cce7b18495e4
-  - 107d3ba7024a
+  - 6a457678efcb
   - a6619171428e
+  - '841557158611'
+  - d033ffc1c161
   - 3b8b5bde0bd9
+  - 107d3ba7024a
+  - f04a1264e2a2
+  - 81e66674859e
   - 5a7c56a5cc08
   - 3f59ebfbfe3d
-  - 81e66674859e
-  - 8834daeb9892
   - 26de3a7b1cb9
-  - d033ffc1c161
-  - f73435dc282b
-  - 6a457678efcb
-  - b89cac5156ec
-  - d7c7ef3353fe
-  - c78f3d7dd1db
-  - '841557158611'
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hyphy_gard
   owner: iuc
   revisions:
+  - 6a726db04d4b
+  - 7a2092844346
   - 4755f52427c4
-  - b0af57c1a968
-  - a185b079b095
-  - 659517798cc4
+  - df47d4845b62
   - e75442c7f4da
-  - 6223845127ea
   - 88c4aa435ded
+  - 6283babe736e
+  - a185b079b095
+  - 6223845127ea
   - aa8cc71438cf
+  - 02b8758214b0
+  - 659517798cc4
+  - 3b96e92e8ec3
   - 5b777002c2de
-  - 6283babe736e
   - 5fcd1ece3a6e
-  - 7a2092844346
-  - 6a726db04d4b
-  - df47d4845b62
-  - 3b96e92e8ec3
-  - 02b8758214b0
+  - b0af57c1a968
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: iqtree
   owner: iuc
   revisions:
-  - b8476e82ac20
-  - 524d31add34a
   - f97743d52b87
-  - 9b892d7f82cc
+  - 524d31add34a
   - d1c340a5664b
+  - 9b892d7f82cc
+  - b8476e82ac20
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nextclade
   owner: iuc
   revisions:
+  - 128ba8da994f
   - feb40665d7cd
-  - daddf188c13f
   - 9e10ba792be2
-  - 128ba8da994f
+  - daddf188c13f
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: orthofinder_onlygroups
@@ -101,53 +101,53 @@ tools:
 - name: pangolin
   owner: iuc
   revisions:
-  - 03ed9524dcd1
-  - 42a174224817
-  - 3a43c3982401
-  - b7e297c2ede6
-  - 14ae456b8cc5
-  - 437e28791761
-  - 81804a978fc0
-  - 36912871ccdc
+  - a2099fb98cdb
+  - 9d61d3fa046c
+  - ca337cce3888
+  - 2f1019071464
   - 2fa9d4f1b48f
+  - b6abccb1f25b
   - abf6dbe8c9d7
+  - 42a174224817
   - 5f8727ff21e7
-  - ca337cce3888
+  - 83a69484cb87
+  - 81804a978fc0
   - 7bb8726be37c
-  - 2f1019071464
+  - 36912871ccdc
+  - 03ed9524dcd1
   - ca0d8cf80567
-  - b6abccb1f25b
-  - a2099fb98cdb
-  - 83a69484cb87
-  - 9d61d3fa046c
+  - b7e297c2ede6
+  - 3a43c3982401
+  - 14ae456b8cc5
+  - 437e28791761
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyml
   owner: iuc
   revisions:
-  - 7157a5b34a68
   - 2bf47d57ebb5
+  - 7157a5b34a68
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raxml
   owner: iuc
   revisions:
-  - a4b71be30c3c
-  - ba29b5e2a4be
-  - 73a469f7dc96
   - 29ff6a849eac
+  - ba29b5e2a4be
   - ea30d3089354
   - b1e68bbe4cef
+  - a4b71be30c3c
+  - 73a469f7dc96
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: roary
   owner: iuc
   revisions:
-  - 15ac71df11a0
   - 91887494eb97
   - e88a7de55d6e
-  - f1ccc8a6eb05
-  - 809e42326fc2
   - dbe2b2204555
+  - 809e42326fc2
+  - 15ac71df11a0
+  - f1ccc8a6eb05
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/picard.yml b/staging.gvl.org.au/picard.yml
index f69d94bc6..43ed022c7 100644
--- a/staging.gvl.org.au/picard.yml
+++ b/staging.gvl.org.au/picard.yml
@@ -2,13 +2,13 @@ tools:
 - name: picard
   owner: devteam
   revisions:
-  - fc288950c3b7
+  - 1aac2a13842a
   - b502c227b5e6
   - f6ced08779c4
   - f9242e01365a
-  - 1aac2a13842a
-  - a1f0b3f4b781
   - 881d7645d1bf
   - 7d34178f2812
+  - a1f0b3f4b781
+  - fc288950c3b7
   tool_panel_section_label: Picard
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/proteomic_ai.yml b/staging.gvl.org.au/proteomic_ai.yml
index 3f3ec9650..24230d882 100644
--- a/staging.gvl.org.au/proteomic_ai.yml
+++ b/staging.gvl.org.au/proteomic_ai.yml
@@ -2,14 +2,14 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
-  - d00e15139065
   - 7fbec959cf2b
-  - c0e71cb2bd1b
-  - a58f7eb0df2c
+  - ca90d17ff51b
+  - d00e15139065
+  - 5b85006245f3
   - 3bd420ec162d
   - eb085b3dbaf8
-  - 5b85006245f3
-  - ca90d17ff51b
+  - a58f7eb0df2c
   - e4a053d67e24
+  - c0e71cb2bd1b
   tool_panel_section_label: Proteomic AI
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/proteomics.yml b/staging.gvl.org.au/proteomics.yml
index 5ba7da24e..7b7cda8c4 100644
--- a/staging.gvl.org.au/proteomics.yml
+++ b/staging.gvl.org.au/proteomics.yml
@@ -3,28 +3,28 @@ tools:
   owner: galaxyp
   revisions:
   - 277dc652246e
-  - f28ad96b76dc
+  - 0a18ac48ac53
   - b18329a8ac14
-  - b574b84afc4d
+  - f28ad96b76dc
   - ece627528a78
-  - 0a18ac48ac53
+  - b574b84afc4d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_combine
   owner: galaxyp
   revisions:
-  - e215f71d7983
-  - bf06d196e23d
   - b41107d8fe89
+  - e215f71d7983
   - 525f201b86c1
   - e988563cc6e5
+  - bf06d196e23d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_data_exporter
   owner: galaxyp
   revisions:
-  - 4fbffddde8cd
   - bb6397b94018
+  - 4fbffddde8cd
   - 8da3511c9467
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -32,9 +32,9 @@ tools:
   owner: galaxyp
   revisions:
   - f23d67e28cc8
-  - b8c79e70516d
   - a8157342d9a3
   - 528fb09022be
+  - b8c79e70516d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_mz_images
@@ -51,36 +51,36 @@ tools:
   owner: galaxyp
   revisions:
   - e0669b1854b1
-  - 798da6bdff3d
-  - ed9ed1e6cca2
   - 611d80c0e29d
+  - ed9ed1e6cca2
+  - 798da6bdff3d
   - f1897eb07081
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_quality_report
   owner: galaxyp
   revisions:
+  - a7fb9b395ddf
   - 5a35e3a8d013
   - 74b61bf5bc4b
-  - a7fb9b395ddf
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_segmentations
   owner: galaxyp
   revisions:
-  - cc430977c8ff
-  - df2187f9013b
   - 82f6c2f4332d
+  - df2187f9013b
+  - cc430977c8ff
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_spectra_plots
   owner: galaxyp
   revisions:
-  - 10566783d718
+  - 043f9c91f686
   - c5aa9fca18c6
-  - 1693b2126f30
   - d2483487e077
-  - 043f9c91f686
+  - 1693b2126f30
+  - 10566783d718
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: custom_pro_db
@@ -112,30 +112,30 @@ tools:
 - name: encyclopedia_encyclopedia
   owner: galaxyp
   revisions:
-  - d263296cd73e
   - d0ea7589e95f
+  - d263296cd73e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_quantify
   owner: galaxyp
   revisions:
-  - 1c5cbf8f79ce
   - 0fa397f4f40b
   - 4081e4faa4ab
+  - 1c5cbf8f79ce
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_searchtolib
   owner: galaxyp
   revisions:
-  - fb192dd6658a
   - 36880dfd9fa7
+  - fb192dd6658a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_walnut
   owner: galaxyp
   revisions:
-  - ce1a157a41bd
   - d6a4dfdad269
+  - ce1a157a41bd
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: flashlfq
@@ -147,16 +147,16 @@ tools:
 - name: maldi_quant_peak_detection
   owner: galaxyp
   revisions:
-  - e66f552a3c47
-  - 160538a890a6
   - d286ff4600dd
+  - 160538a890a6
+  - e66f552a3c47
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maldi_quant_preprocessing
   owner: galaxyp
   revisions:
-  - 71411ac28268
   - 60ee8c592b13
+  - 71411ac28268
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maxquant_mqpar
@@ -169,16 +169,16 @@ tools:
 - name: maxquant
   owner: galaxyp
   revisions:
-  - 4d17fcdeb8ff
-  - e42225f8a659
-  - f522c08e900c
   - 837224ad1694
+  - f522c08e900c
   - 8934bc76bb52
   - 2133b0be850a
+  - 7f432d87c82c
+  - 4d17fcdeb8ff
+  - 37d669de2828
   - 1f39c833f65f
   - 97a7f34fcb6a
-  - 37d669de2828
-  - 7f432d87c82c
+  - e42225f8a659
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_db
@@ -186,53 +186,53 @@ tools:
   revisions:
   - a72ac2c7cc5b
   - '860429737408'
-  - 0ed07016d668
   - 85b8866f06d7
+  - 0ed07016d668
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_expand
   owner: galaxyp
   revisions:
-  - 1974224d63c2
   - 352b37c66d97
-  - 990b4560ead7
   - 4187b6df1a40
+  - 990b4560ead7
+  - 1974224d63c2
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_filter
   owner: galaxyp
   revisions:
+  - a1daafbf5233
   - 4f359549383c
   - deaf035bbe9f
-  - a1daafbf5233
   - 99450519d727
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_sample
   owner: galaxyp
   revisions:
-  - c1343e3389ca
-  - 40ca115438d2
   - c7745841de24
   - e79958768a2c
+  - 40ca115438d2
+  - c1343e3389ca
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_stat
   owner: galaxyp
   revisions:
-  - da986f83631b
+  - b648e45fd3cf
   - d46d64e7964d
+  - da986f83631b
   - d2eac53666f0
-  - b648e45fd3cf
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_viz
   owner: galaxyp
   revisions:
-  - eb811f3018ea
   - 1199751329b0
-  - 944b43462104
   - 9bf325045235
+  - eb811f3018ea
+  - 944b43462104
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: morpheus
@@ -250,25 +250,25 @@ tools:
 - name: msstats
   owner: galaxyp
   revisions:
-  - 8212e342e482
+  - b7034eff0db1
   - 28434abe6c5c
+  - 8212e342e482
   - 593839e1f2c3
-  - b7034eff0db1
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msstatstmt
   owner: galaxyp
   revisions:
-  - a5e394b36d87
   - bd1535813cfe
+  - a5e394b36d87
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_consensusid
   owner: galaxyp
   revisions:
   - 4e77b8f12cd3
-  - 8960fb791701
   - 01dbaf6a57e0
+  - 8960fb791701
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_decoydatabase
@@ -281,10 +281,10 @@ tools:
 - name: openms_falsediscoveryrate
   owner: galaxyp
   revisions:
-  - c9eff69a7c62
+  - f7fef900f5b2
   - 9cdf15d3cfc8
+  - c9eff69a7c62
   - 518b1730cf2a
-  - f7fef900f5b2
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_featurefindermultiplex
@@ -314,75 +314,75 @@ tools:
 - name: openms_filefilter
   owner: galaxyp
   revisions:
-  - 05d5e1ddc985
-  - 0bb5056cb775
   - d6878d27f051
+  - 0bb5056cb775
+  - 05d5e1ddc985
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileinfo
   owner: galaxyp
   revisions:
+  - 5ad830edc021
   - febd569ad26f
   - 52ba9695e752
-  - 5ad830edc021
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filemerger
   owner: galaxyp
   revisions:
-  - 92352a475eed
   - 39e8fde08881
   - 27cba4c5fc42
+  - 92352a475eed
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_highresprecursormasscorrector
   owner: galaxyp
   revisions:
+  - d413dc49d650
   - 0efbc235f314
   - 9e26f5c770f8
-  - d413dc49d650
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idconflictresolver
   owner: galaxyp
   revisions:
   - 3720e349ba2a
-  - c28f13cab67a
   - 8a04ed1c1d1b
+  - c28f13cab67a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idfilter
   owner: galaxyp
   revisions:
+  - c55dddc5844a
   - c427a8628cbe
-  - ca799a7246e7
   - 382cde407f81
-  - c55dddc5844a
+  - ca799a7246e7
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmapper
   owner: galaxyp
   revisions:
-  - 8ddb7bab1138
   - 39caaa778d2e
+  - 8ddb7bab1138
   - b5d0905419da
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmerger
   owner: galaxyp
   revisions:
-  - 18f93351f8b6
-  - f817513840a9
   - 8d4db262964c
+  - 18f93351f8b6
   - 1c5f31b8d632
+  - f817513840a9
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idposteriorerrorprobability
   owner: galaxyp
   revisions:
-  - 111c3a00136d
   - 5d9f175dff81
   - c69f69d7867a
+  - 111c3a00136d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idscoreswitcher
@@ -396,16 +396,16 @@ tools:
 - name: openms_msfraggeradapter
   owner: galaxyp
   revisions:
-  - 9866e1170611
   - e133b5c8878f
+  - 9866e1170611
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msgfplusadapter
   owner: galaxyp
   revisions:
+  - 2b2a7551a857
   - c18d8efa4474
   - a407b6790342
-  - 2b2a7551a857
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_multiplexresolver
@@ -418,8 +418,8 @@ tools:
 - name: openms_mztabexporter
   owner: galaxyp
   revisions:
-  - 8098330f6d91
   - ee860980edc6
+  - 8098330f6d91
   - bf32e0bcf554
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -440,15 +440,15 @@ tools:
 - name: openms_openswathconfidencescoring
   owner: galaxyp
   revisions:
-  - 1bf940c18d93
   - e8f64a7dc470
+  - 1bf940c18d93
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdecoygenerator
   owner: galaxyp
   revisions:
-  - f861ec9fbe59
   - 9f505cd4428f
+  - f861ec9fbe59
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdiaprescoring
@@ -475,8 +475,8 @@ tools:
 - name: openms_openswathrtnormalizer
   owner: galaxyp
   revisions:
-  - 18826fb8e5db
   - 6e8cc5ed2a9b
+  - 18826fb8e5db
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathworkflow
@@ -532,9 +532,9 @@ tools:
 - name: openms_xtandemadapter
   owner: galaxyp
   revisions:
-  - fb52e95a370c
-  - 7f6a1f27553e
   - c8b225c69a7f
+  - 7f6a1f27553e
+  - fb52e95a370c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pep_pointer
@@ -554,14 +554,14 @@ tools:
 - name: peptideshaker
   owner: galaxyp
   revisions:
-  - 943a34df6047
-  - 3ec27b4cee7c
-  - 1beff3ddce58
   - 7fdd9119cc4f
-  - 07ff622ec007
+  - 3ec27b4cee7c
+  - 943a34df6047
+  - da885ca16cb2
   - a72c48001f7c
   - 3634c90301af
-  - da885ca16cb2
+  - 1beff3ddce58
+  - 07ff622ec007
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: percolator
@@ -615,10 +615,10 @@ tools:
 - name: uniprotxml_downloader
   owner: galaxyp
   revisions:
-  - a371252a2cf6
-  - 1a5690a5eedc
   - 12692567c7f9
+  - 1a5690a5eedc
   - 265c35540faa
+  - a371252a2cf6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: xtandem
diff --git a/staging.gvl.org.au/rad_seq.yml b/staging.gvl.org.au/rad_seq.yml
index 001fa4b2b..f82ef369b 100644
--- a/staging.gvl.org.au/rad_seq.yml
+++ b/staging.gvl.org.au/rad_seq.yml
@@ -2,11 +2,11 @@ tools:
 - name: stacks2_clonefilter
   owner: iuc
   revisions:
-  - 289b7d6b69a4
+  - e345aadf914f
   - 42201b90e3f4
   - cd5f98911089
-  - e345aadf914f
   - 110a346daf36
+  - 289b7d6b69a4
   - 2f1d464ebfd2
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -19,10 +19,10 @@ tools:
 - name: stacks2_cstacks
   owner: iuc
   revisions:
-  - c207119ba5f6
-  - 0cd2df8af811
   - 8501601a118d
+  - c207119ba5f6
   - fcce77c09289
+  - 0cd2df8af811
   - 42d9087b4789
   - 0345dbaaa79b
   tool_panel_section_label: RAD-seq
@@ -36,12 +36,12 @@ tools:
 - name: stacks2_denovomap
   owner: iuc
   revisions:
-  - 89eb29319bf4
   - ad5ab22ffe24
-  - 421c33b8bf17
+  - 89eb29319bf4
   - 04db7fd6b238
-  - 33486216eec0
   - 405a212b32ab
+  - 421c33b8bf17
+  - 33486216eec0
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_denovomap
@@ -53,12 +53,12 @@ tools:
 - name: stacks2_gstacks
   owner: iuc
   revisions:
-  - 1d839ead7ad3
-  - 7b72fde3d27e
   - f6e91108b7b1
   - fa51dc5e8386
+  - 1d839ead7ad3
   - eb784fa07f80
   - 7370bb65bad4
+  - 7b72fde3d27e
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_gstacks
@@ -70,12 +70,12 @@ tools:
 - name: stacks2_kmerfilter
   owner: iuc
   revisions:
+  - 1544278c272e
   - 8a55d29c8fcf
+  - 3d70c2996730
   - a3e86cd9cac7
-  - c9b77ced9a78
-  - 1544278c272e
   - d30e36c48c93
-  - 3d70c2996730
+  - c9b77ced9a78
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_kmerfilter
@@ -87,12 +87,12 @@ tools:
 - name: stacks2_populations
   owner: iuc
   revisions:
-  - e2db212d64ad
-  - 7b881f5f5ad5
   - b242deb58952
   - a5969aa9347e
+  - 7b881f5f5ad5
   - 887cf585cafc
   - 564c33e5c3e3
+  - e2db212d64ad
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_populations
@@ -104,11 +104,11 @@ tools:
 - name: stacks2_procrad
   owner: iuc
   revisions:
+  - 8cff84759bf6
   - e897c74a48bb
-  - bd5ff77e2036
-  - 9a171f9a450b
   - b4bab607eb05
-  - 8cff84759bf6
+  - 9a171f9a450b
+  - bd5ff77e2036
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_procrad
@@ -120,11 +120,11 @@ tools:
 - name: stacks2_refmap
   owner: iuc
   revisions:
-  - 5e10f396979e
   - 33f0793edf93
-  - 4f65e343ecdf
-  - adc7a7610d4f
   - 887e0991eb24
+  - 5e10f396979e
+  - adc7a7610d4f
+  - 4f65e343ecdf
   - 6dafad990086
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -137,12 +137,12 @@ tools:
 - name: stacks2_shortreads
   owner: iuc
   revisions:
+  - 17d39bf0a63a
   - 97575d01f06b
   - 43e3eeb2e0ec
   - c5d7050e4ad7
-  - 4e280b27a831
-  - 17d39bf0a63a
   - c287418eb288
+  - 4e280b27a831
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_shortreads
@@ -155,11 +155,11 @@ tools:
   owner: iuc
   revisions:
   - 09b8edb56d80
-  - 9586f08634c0
   - a819ec3b362d
+  - 9586f08634c0
   - 0b8c84a7fdb5
-  - d9bf483266a1
   - cd034465d4a4
+  - d9bf483266a1
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_sstacks
@@ -172,10 +172,10 @@ tools:
   owner: iuc
   revisions:
   - bf0e43ab0416
-  - a4b4bd84f69e
+  - 95351dd0fd3f
   - a9c34a289493
   - 2645575d1bf2
-  - 95351dd0fd3f
+  - a4b4bd84f69e
   - 69842dd5aa48
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -188,12 +188,12 @@ tools:
 - name: stacks2_ustacks
   owner: iuc
   revisions:
-  - 8a35a3bc6752
   - 912f904a6e1e
-  - d1fda11e602f
+  - d033e1ccb386
   - bb0475c884ff
   - cfb504394ae1
-  - d033e1ccb386
+  - d1fda11e602f
+  - 8a35a3bc6752
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_ustacks
@@ -235,9 +235,9 @@ tools:
 - name: stacks_populations
   owner: iuc
   revisions:
+  - d1fad35bdb4a
   - 95286af4139b
   - d504d945a655
-  - d1fad35bdb4a
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_procrad
@@ -267,8 +267,8 @@ tools:
 - name: stacks_sstacks
   owner: iuc
   revisions:
-  - 563af4497055
   - 96de7538bf0c
+  - 563af4497055
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_stats
diff --git a/staging.gvl.org.au/rna_seq.yml b/staging.gvl.org.au/rna_seq.yml
index dfc3e2f10..0cb1dc1f4 100644
--- a/staging.gvl.org.au/rna_seq.yml
+++ b/staging.gvl.org.au/rna_seq.yml
@@ -2,9 +2,9 @@ tools:
 - name: arriba_draw_fusions
   owner: iuc
   revisions:
-  - 31f8063eedea
   - cf01dd6c6b1f
   - 2d4e3aff9dc7
+  - 31f8063eedea
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba_get_filters
@@ -31,8 +31,8 @@ tools:
 - name: blockclust
   owner: rnateam
   revisions:
-  - aab6cf87b40a
   - dbb6ee3179bc
+  - aab6cf87b40a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blockclust
@@ -63,15 +63,15 @@ tools:
 - name: cufflinks
   owner: devteam
   revisions:
-  - d080005cffe1
   - e04dbae2abe0
+  - d080005cffe1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffmerge
   owner: devteam
   revisions:
-  - 6a6717a5f421
   - 86285ddd4512
+  - 6a6717a5f421
   - cf747d1bd79a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -84,8 +84,8 @@ tools:
 - name: cuffnorm
   owner: devteam
   revisions:
-  - 9a854107dbb2
   - 6cbfede05833
+  - 9a854107dbb2
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffquant
@@ -109,10 +109,10 @@ tools:
 - name: describe_samples
   owner: iuc
   revisions:
-  - e3b16fd7dd08
   - 8f0181aacb7a
   - 3b36efd62b3e
   - 0693ccd171c4
+  - e3b16fd7dd08
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: describe_samples
@@ -124,12 +124,12 @@ tools:
 - name: deseq2
   owner: iuc
   revisions:
-  - 9a882d108833
-  - cd9874cb9019
   - 0696db066a5b
   - 24a09ca67621
-  - 6a3a025714d3
+  - 9a882d108833
+  - cd9874cb9019
   - 8fe98f7094de
+  - 6a3a025714d3
   - d027d1f4984e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -142,10 +142,10 @@ tools:
 - name: dexseq
   owner: iuc
   revisions:
-  - 62adf13b86ea
   - df929f257179
   - 2872c633f07e
   - b47c006d90c5
+  - 62adf13b86ea
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dexseq
@@ -157,17 +157,17 @@ tools:
 - name: edger
   owner: iuc
   revisions:
-  - 5bf899c13979
-  - 0cb907a2a810
+  - a8305cf0c951
   - 6e53e565fc6a
-  - 555659de7321
-  - df0c8d0a5992
-  - 3d89af8a44f0
-  - 070900306913
   - 334ce9b1bac5
+  - df0c8d0a5992
   - f2843df56434
+  - 0cb907a2a810
   - 9bdff28ae1b1
-  - a8305cf0c951
+  - 555659de7321
+  - 3d89af8a44f0
+  - 5bf899c13979
+  - 070900306913
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: edger
@@ -179,8 +179,8 @@ tools:
 - name: egsea
   owner: iuc
   revisions:
-  - 31ea4992b948
   - fba1660fb717
+  - 31ea4992b948
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: egsea
@@ -198,17 +198,17 @@ tools:
 - name: featurecounts
   owner: iuc
   revisions:
-  - f3a5f075498f
-  - 6f66ae7c5f7a
-  - 38b6d12edc68
-  - a37612abf7f9
-  - af814359d244
-  - f9d49f5cb597
-  - ea04b737afa0
+  - a56fbe2d6ba7
   - 90d16db017d7
+  - 38b6d12edc68
   - 7db9d3ea71c9
+  - af814359d244
+  - f3a5f075498f
   - e6a2a912677a
-  - a56fbe2d6ba7
+  - ea04b737afa0
+  - a37612abf7f9
+  - 6f66ae7c5f7a
+  - f9d49f5cb597
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: featurecounts
@@ -232,9 +232,9 @@ tools:
 - name: gffcompare
   owner: iuc
   revisions:
-  - f99dd58de04f
-  - 3c97c841a443
   - 0f710191a66d
+  - 3c97c841a443
+  - f99dd58de04f
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gffcompare
@@ -252,13 +252,13 @@ tools:
 - name: hisat2
   owner: iuc
   revisions:
-  - d4b55e2beb12
-  - 6ab42baa56e9
+  - 6c19daec423d
   - 26371a1df031
-  - f4af63aaf57a
   - 3fb01a8c902d
-  - 6c19daec423d
+  - f4af63aaf57a
   - a86e80d3c09c
+  - d4b55e2beb12
+  - 6ab42baa56e9
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hisat2
@@ -295,11 +295,11 @@ tools:
 - name: kallisto_pseudo
   owner: iuc
   revisions:
-  - 87c11c05d238
-  - 1c75aa5de15e
+  - 5ae5c312d718
   - ce5d418183c5
+  - 87c11c05d238
   - 01247aaf0a10
-  - 5ae5c312d718
+  - 1c75aa5de15e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kallisto_pseudo
@@ -311,8 +311,8 @@ tools:
 - name: kallisto_quant
   owner: iuc
   revisions:
-  - 4f9c4e6566e5
   - c971db6f0fe5
+  - 4f9c4e6566e5
   - 40985510cd98
   - 10c98fab6c5a
   tool_panel_section_label: RNA-seq
@@ -326,13 +326,13 @@ tools:
 - name: limma_voom
   owner: iuc
   revisions:
-  - d6f5fa4ee473
   - 32511f586472
-  - 0921444c832d
-  - 97e06a4c7c75
   - 708348a17fa1
-  - 58c35179ebf0
   - e827f9aae031
+  - 97e06a4c7c75
+  - 58c35179ebf0
+  - d6f5fa4ee473
+  - 0921444c832d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: limma_voom
@@ -350,8 +350,8 @@ tools:
 - name: mirdeep2_mapper
   owner: rnateam
   revisions:
-  - a8d24f4b6d95
   - dbbe92348c7a
+  - a8d24f4b6d95
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mirdeep2_mapper
@@ -394,17 +394,17 @@ tools:
   owner: iuc
   revisions:
   - 7ed2edc1337f
-  - e132e7d02a3e
-  - 4074fc1940e2
-  - 0a563fd2f22e
-  - 4df95e2d7f61
-  - 5ec75f5dae3c
-  - 79de45b5069b
   - c7c55b694974
-  - b9e04854e2bb
-  - 3ea5a2a63fa2
   - c772497b2c32
+  - b9e04854e2bb
   - 980d2a2e1180
+  - 79de45b5069b
+  - 4df95e2d7f61
+  - 3ea5a2a63fa2
+  - 0a563fd2f22e
+  - e132e7d02a3e
+  - 5ec75f5dae3c
+  - 4074fc1940e2
   - 99b17b74a8cd
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -429,13 +429,13 @@ tools:
 - name: salmon
   owner: bgruening
   revisions:
-  - ebab418107f5
-  - e3d32471da11
-  - 15cd64d7c58b
-  - 53e9709776a0
-  - 2c0ca397d302
   - cc05793bb896
   - 49121db48873
+  - 15cd64d7c58b
+  - 2c0ca397d302
+  - e3d32471da11
+  - ebab418107f5
+  - 53e9709776a0
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salmon
@@ -447,21 +447,21 @@ tools:
 - name: seurat
   owner: iuc
   revisions:
+  - 8c28affc7c48
   - 56242ff81c84
-  - fab6ff46e019
   - c0fd285eb553
-  - 8c28affc7c48
+  - fab6ff46e019
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
   owner: iuc
   revisions:
-  - 258d696dbd7e
-  - 1ebd14235b92
-  - dd4df992d93d
-  - 76d290331481
   - ae618321f34a
+  - dd4df992d93d
+  - 1ebd14235b92
   - cef79931dda5
+  - 76d290331481
+  - 258d696dbd7e
   - 914cfcba0ec8
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -498,9 +498,9 @@ tools:
 - name: transdecoder
   owner: iuc
   revisions:
-  - c6334cb383ff
   - d0d4cef4f967
   - 0db979fead3a
+  - c6334cb383ff
   - ffd1300599a1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -513,10 +513,10 @@ tools:
 - name: trinity_abundance_estimates_to_matrix
   owner: iuc
   revisions:
-  - ba3720d7e68b
   - bcc5f03f1900
-  - 74217fbfba4d
+  - ba3720d7e68b
   - d6a479fd4281
+  - 74217fbfba4d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_abundance_estimates_to_matrix
@@ -528,10 +528,10 @@ tools:
 - name: trinity_align_and_estimate_abundance
   owner: iuc
   revisions:
-  - 2fb4ee002432
   - 478f36effca1
-  - 56162e446004
   - c2b82a94493e
+  - 2fb4ee002432
+  - 56162e446004
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_align_and_estimate_abundance
@@ -543,9 +543,9 @@ tools:
 - name: trinity_analyze_diff_expr
   owner: iuc
   revisions:
-  - 3f4094b6a565
   - 9ff3765e7172
   - fab23c3b5258
+  - 3f4094b6a565
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_analyze_diff_expr
@@ -557,10 +557,10 @@ tools:
 - name: trinity_contig_exn50_statistic
   owner: iuc
   revisions:
-  - be3f26533209
   - 34a018cbee9c
-  - 4687ecf0eb2d
   - 870ac06dff8e
+  - 4687ecf0eb2d
+  - be3f26533209
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_contig_exn50_statistic
@@ -572,11 +572,11 @@ tools:
 - name: trinity_define_clusters_by_cutting_tree
   owner: iuc
   revisions:
+  - c5fbddcac63a
   - 33406f5a445c
+  - 5192f657f305
   - 65e7dea767ea
   - 05ab8d5e04a2
-  - c5fbddcac63a
-  - 5192f657f305
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_define_clusters_by_cutting_tree
@@ -588,10 +588,10 @@ tools:
 - name: trinity_filter_low_expr_transcripts
   owner: iuc
   revisions:
-  - 1fdb25a8384d
-  - 6f0fb35b799c
   - e406ac71165d
+  - 6f0fb35b799c
   - a35cba31d904
+  - 1fdb25a8384d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_filter_low_expr_transcripts
@@ -603,10 +603,10 @@ tools:
 - name: trinity_gene_to_trans_map
   owner: iuc
   revisions:
-  - c2c039e421af
-  - 964b7efe2639
   - 37a1129c89d2
   - 7c7fbf13aadd
+  - c2c039e421af
+  - 964b7efe2639
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_gene_to_trans_map
@@ -619,9 +619,9 @@ tools:
   owner: iuc
   revisions:
   - eafea3083352
+  - 24e94d84adc9
   - 1d689e4e1caf
   - 047c22569787
-  - 24e94d84adc9
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_run_de_analysis
@@ -633,10 +633,10 @@ tools:
 - name: trinity_samples_qccheck
   owner: iuc
   revisions:
-  - 9871104ea630
   - 04bb8bb7c198
   - 3a4ac03d1266
   - 1812dbc5bb7b
+  - 9871104ea630
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_samples_qccheck
@@ -648,15 +648,15 @@ tools:
 - name: trinity
   owner: iuc
   revisions:
-  - d2bc35f3d1c5
-  - c9cfec002f71
-  - 8f1c3df4dd49
   - 32b86cd8eb50
-  - db1f362cca3e
-  - d84caa5a98ad
-  - 48636f857c4b
+  - 8f1c3df4dd49
   - cee61b3fcf78
+  - d84caa5a98ad
   - 9fa24d5aac68
+  - c9cfec002f71
+  - d2bc35f3d1c5
+  - 48636f857c4b
+  - db1f362cca3e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity
@@ -669,9 +669,9 @@ tools:
   owner: iuc
   revisions:
   - 4383070d29ed
-  - 6fd16fad465d
-  - 2b093007fab9
   - 9e61bc67866f
+  - 2b093007fab9
+  - 6fd16fad465d
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinotate
diff --git a/staging.gvl.org.au/rseqc.yml b/staging.gvl.org.au/rseqc.yml
index b2c45c52e..b41c54fe8 100644
--- a/staging.gvl.org.au/rseqc.yml
+++ b/staging.gvl.org.au/rseqc.yml
@@ -2,8 +2,8 @@ tools:
 - name: rseqc
   owner: nilesh
   revisions:
-  - 1a052c827e88
   - 080fd5739bb4
+  - 1a052c827e88
   - 473382134e56
   tool_panel_section_label: RSeQC
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/sambam.yml b/staging.gvl.org.au/sambam.yml
index c3b97cb78..833c8b4ce 100644
--- a/staging.gvl.org.au/sambam.yml
+++ b/staging.gvl.org.au/sambam.yml
@@ -2,9 +2,9 @@ tools:
 - name: bam_to_sam
   owner: devteam
   revisions:
+  - 88eedb4abea0
   - 10184eaa85fc
   - a53efedba9e7
-  - 88eedb4abea0
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bam_to_sam
@@ -16,9 +16,9 @@ tools:
 - name: bamtools_filter
   owner: devteam
   revisions:
+  - cb20f99fd45b
   - 108db6635177
   - 1dfd95ee241e
-  - cb20f99fd45b
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_filter
@@ -55,9 +55,9 @@ tools:
 - name: qualimap_bamqc
   owner: iuc
   revisions:
-  - 5f8e69cc4c6e
-  - 19ece8afbaab
   - e7fd6754d093
+  - 19ece8afbaab
+  - 5f8e69cc4c6e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: qualimap_multi_bamqc
@@ -69,8 +69,8 @@ tools:
 - name: sam2interval
   owner: devteam
   revisions:
-  - 8c737b8ddc45
   - 75557c0908a9
+  - 8c737b8ddc45
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam_bitwise_flag_filter
@@ -82,8 +82,8 @@ tools:
 - name: sam_pileup
   owner: devteam
   revisions:
-  - 890d97772e2a
   - a3b4ad6858ff
+  - 890d97772e2a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sam_to_bam
@@ -108,8 +108,8 @@ tools:
 - name: samtool_filter2
   owner: devteam
   revisions:
-  - 56c31114ad4a
   - 649a225999a5
+  - 56c31114ad4a
   - dc6ff68ea5e8
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -117,9 +117,9 @@ tools:
   owner: devteam
   revisions:
   - 9149ad20699a
-  - 6856f8a01905
-  - 46c6639921f1
   - 12749212f61b
+  - 46c6639921f1
+  - 6856f8a01905
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_bedcov
@@ -131,10 +131,10 @@ tools:
 - name: samtools_calmd
   owner: devteam
   revisions:
-  - c89806670ab9
+  - 33208952b99d
   - 06dc50b7b711
+  - c89806670ab9
   - 92ec40abcdcf
-  - 33208952b99d
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_calmd
@@ -146,8 +146,8 @@ tools:
 - name: samtools_fastx
   owner: iuc
   revisions:
-  - 66e23b11feae
   - b3d99709fe1a
+  - 66e23b11feae
   - 720217c23995
   - a8d69aee190e
   tool_panel_section_label: SAM/BAM
@@ -161,11 +161,11 @@ tools:
 - name: samtools_flagstat
   owner: devteam
   revisions:
-  - cc61ade70eb8
   - fefd89ab563c
   - 22970df7a40e
-  - db17d5321bad
   - fe34990e5ce7
+  - cc61ade70eb8
+  - db17d5321bad
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_flagstat
@@ -177,11 +177,11 @@ tools:
 - name: samtools_idxstats
   owner: devteam
   revisions:
-  - 811fc2d75ad4
   - 7a6034296ae9
   - 7def34e6cf4d
-  - fa5d3e61e429
   - 88b8c2916784
+  - 811fc2d75ad4
+  - fa5d3e61e429
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_idxstats
@@ -193,19 +193,19 @@ tools:
 - name: samtools_merge
   owner: iuc
   revisions:
-  - b40e2d865d52
   - 36677f429310
-  - 740ce0a18f0d
   - 65a38e8c8e2a
+  - b40e2d865d52
+  - 740ce0a18f0d
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
   owner: devteam
   revisions:
-  - 329deb17a9f7
-  - 9da0311ab1dd
   - 583abf29fc8e
+  - 9da0311ab1dd
   - fa7ad9b89f4a
+  - 329deb17a9f7
   - b61f5d6a7f25
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -231,9 +231,9 @@ tools:
 - name: samtools_reheader
   owner: devteam
   revisions:
+  - d7b4851d1971
   - bb8cfc6f6e0c
   - db000c6007a0
-  - d7b4851d1971
   - 30388d878f81
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -252,9 +252,9 @@ tools:
 - name: samtools_slice_bam
   owner: devteam
   revisions:
+  - b5c88b7b153e
   - 344fc91e1bfd
   - a4a10c7924d1
-  - b5c88b7b153e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_slice_bam
@@ -266,9 +266,9 @@ tools:
 - name: samtools_sort
   owner: devteam
   revisions:
-  - cab3f8d35989
   - 6c2c1836728b
   - a577ea614bed
+  - cab3f8d35989
   - e613c1ad4c4c
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -281,8 +281,8 @@ tools:
 - name: samtools_split
   owner: devteam
   revisions:
-  - 135c85f4cfaf
   - 5d9ae78f34d3
+  - 135c85f4cfaf
   - b7f7826ef1cd
   - bcedabb53ddf
   tool_panel_section_label: SAM/BAM
@@ -296,11 +296,11 @@ tools:
 - name: samtools_stats
   owner: devteam
   revisions:
+  - fed4aa48ba09
   - 1cc79f49b8d5
+  - 145f6d74ff5e
   - 5a08c09b9311
   - 24c5d43cb545
-  - 145f6d74ff5e
-  - fed4aa48ba09
   - 3a0efe14891f
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -313,14 +313,14 @@ tools:
 - name: samtools_view
   owner: iuc
   revisions:
-  - 0dbf49c414ae
-  - 5826298f6a73
-  - b01db2684fa5
-  - b72793637686
   - bf328cec6a42
+  - 0dbf49c414ae
   - 350bbc5c2ffd
-  - c370440f901e
   - 6be888be75f9
+  - b01db2684fa5
+  - 5826298f6a73
+  - c370440f901e
+  - b72793637686
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_view
diff --git a/staging.gvl.org.au/send_data.yml b/staging.gvl.org.au/send_data.yml
index cdf82e037..60361cf42 100644
--- a/staging.gvl.org.au/send_data.yml
+++ b/staging.gvl.org.au/send_data.yml
@@ -2,11 +2,11 @@ tools:
 - name: ena_upload
   owner: iuc
   revisions:
-  - 6f6537780379
-  - 59bb6d34fca6
-  - a62c4a11a67d
   - 4aab5ae907b6
   - d147d6455873
+  - 59bb6d34fca6
   - 480d9e9d156b
+  - a62c4a11a67d
+  - 6f6537780379
   tool_panel_section_label: Send Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/single_cell.yml b/staging.gvl.org.au/single_cell.yml
index fbbff41da..8f70c23ea 100644
--- a/staging.gvl.org.au/single_cell.yml
+++ b/staging.gvl.org.au/single_cell.yml
@@ -2,11 +2,11 @@ tools:
 - name: anndata_import
   owner: iuc
   revisions:
-  - 93dd15e13e6a
   - fb9e030ffae4
+  - 93dd15e13e6a
   - 32e547223c9e
-  - 00712416fdaa
   - 55e35e9203cf
+  - 00712416fdaa
   - cfc3f5a57dc6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -20,11 +20,11 @@ tools:
   owner: iuc
   revisions:
   - b9fac48532eb
-  - 688357ad5e61
   - 6f0d0c784f09
-  - 038e32885fec
-  - 39e945f0b2c1
+  - 688357ad5e61
   - ee98d611afc6
+  - 39e945f0b2c1
+  - 038e32885fec
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_inspect
@@ -37,11 +37,11 @@ tools:
   owner: iuc
   revisions:
   - 9bd945a03d7b
-  - 3d748954434b
-  - ed4996a16f7f
   - b85871dd69f9
   - d4af736e7b83
   - 43cb7b5a6fe7
+  - ed4996a16f7f
+  - 3d748954434b
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_manipulate
@@ -74,15 +74,15 @@ tools:
 - name: music_construct_eset
   owner: bgruening
   revisions:
-  - 282819d09a4f
   - 7ffaa0968da3
+  - 282819d09a4f
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_deconvolution
   owner: bgruening
   revisions:
-  - 2ba99a52bd44
   - 56371b5a2da9
+  - 2ba99a52bd44
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_inspect_eset
@@ -101,8 +101,8 @@ tools:
 - name: raceid_clustering
   owner: iuc
   revisions:
-  - 7e014059a88d
   - f911a64454fb
+  - 7e014059a88d
   - 0bff0ee0683a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -122,8 +122,8 @@ tools:
   owner: iuc
   revisions:
   - f3eb2291da05
-  - 2b0d3e2f402a
   - 37a47c4fd84d
+  - 2b0d3e2f402a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspectclusters
@@ -135,9 +135,9 @@ tools:
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
+  - a6821f856a1e
   - 69018f285aa3
   - df8e4e54d367
-  - a6821f856a1e
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspecttrajectory
@@ -149,8 +149,8 @@ tools:
 - name: raceid_trajectory
   owner: iuc
   revisions:
-  - c92d0f9338c5
   - 44b935f2271b
+  - c92d0f9338c5
   - 2af7c5086a96
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -163,10 +163,10 @@ tools:
 - name: scanpy_cluster_reduce_dimension
   owner: iuc
   revisions:
-  - 6acb08931836
-  - aaa5da8e73a9
   - 77b91b9bdf52
   - b2df381a6004
+  - aaa5da8e73a9
+  - 6acb08931836
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_cluster_reduce_dimension
@@ -178,10 +178,10 @@ tools:
 - name: scanpy_filter
   owner: iuc
   revisions:
+  - 3c86f71498bc
   - a97abb8cd15b
-  - b409c2486353
   - a03ff8633507
-  - 3c86f71498bc
+  - b409c2486353
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter
@@ -194,10 +194,10 @@ tools:
   owner: iuc
   revisions:
   - 3081ff5c84a3
-  - 6c145a6868cc
-  - 5e9171dc8244
   - c5d3684f7c4c
   - cc0deb593fc8
+  - 6c145a6868cc
+  - 5e9171dc8244
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_inspect
@@ -211,8 +211,8 @@ tools:
   revisions:
   - 94c19fb1281c
   - 3bcd5445cd7a
-  - ab55fe8030b6
   - a407e7f8bdc1
+  - ab55fe8030b6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_normalize
@@ -224,10 +224,10 @@ tools:
 - name: scanpy_plot
   owner: iuc
   revisions:
-  - aa0c474463c2
   - dbbe1ea8ecb1
   - 6adf98e782f3
   - 9b0cdb8cf6be
+  - aa0c474463c2
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_plot
@@ -239,11 +239,11 @@ tools:
 - name: scanpy_remove_confounders
   owner: iuc
   revisions:
-  - 458e8f43a775
+  - 73ab2ac53d06
   - bf2017df9837
   - 215733a383f2
+  - 458e8f43a775
   - f2f6c703da06
-  - 73ab2ac53d06
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_remove_confounders
@@ -255,9 +255,9 @@ tools:
 - name: scater_create_qcmetric_ready_sce
   owner: iuc
   revisions:
-  - 8f333f90d8d6
-  - b834074a9aff
   - fd808de478b1
+  - b834074a9aff
+  - 8f333f90d8d6
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_create_qcmetric_ready_sce
@@ -269,9 +269,9 @@ tools:
 - name: scater_filter
   owner: iuc
   revisions:
-  - 652923ce664f
-  - 7a365ec81b52
   - b7ea9f09c02f
+  - 7a365ec81b52
+  - 652923ce664f
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_filter
@@ -283,9 +283,9 @@ tools:
 - name: scater_plot_dist_scatter
   owner: iuc
   revisions:
-  - 2e41b35b5bdd
   - 81e5bdff4853
   - ef4c80837bc5
+  - 2e41b35b5bdd
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_dist_scatter
@@ -298,8 +298,8 @@ tools:
   owner: iuc
   revisions:
   - 46fc6751d746
-  - c99ba278dfa9
   - 9e5c0bb18d08
+  - c99ba278dfa9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_pca
diff --git a/staging.gvl.org.au/statistics.yml b/staging.gvl.org.au/statistics.yml
index 99d0111a9..00862334a 100644
--- a/staging.gvl.org.au/statistics.yml
+++ b/staging.gvl.org.au/statistics.yml
@@ -32,11 +32,11 @@ tools:
 - name: datamash_ops
   owner: iuc
   revisions:
+  - 746e8e4bf929
   - 2f3c6f2dcf39
-  - 4c07ddedc198
   - 562f3c677828
   - 419027d822d6
-  - 746e8e4bf929
+  - 4c07ddedc198
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_ava_perclass
@@ -70,9 +70,9 @@ tools:
 - name: dwt_var_perfeature
   owner: devteam
   revisions:
-  - 6c29c7e347e8
-  - 7a15159140d1
   - cb1c59d69557
+  - 7a15159140d1
+  - 6c29c7e347e8
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: generate_pc_lda_matrix
@@ -120,43 +120,43 @@ tools:
 - name: sklearn_build_pipeline
   owner: bgruening
   revisions:
-  - b1eda492f063
-  - 840f29aad145
   - 4c4ec859c31a
   - 7442b94d6a1e
   - aef56d0e7a61
   - 9c3e1d3235c8
+  - 840f29aad145
+  - b1eda492f063
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_estimator_attributes
   owner: bgruening
   revisions:
   - d0352e8b4c10
-  - 07843f917990
-  - 30d21a6041f6
   - 375bbd555f4a
   - 9fda0b82f419
+  - 30d21a6041f6
+  - 07843f917990
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_nn_classifier
   owner: bgruening
   revisions:
-  - 4cc980df6265
+  - 8b1b2b91f8d0
   - cd02bf168d23
-  - 7ae443e6217d
+  - 4cc980df6265
   - 2c58b83c9bad
-  - 8b1b2b91f8d0
+  - 7ae443e6217d
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
-  - 7dd3fb35904f
-  - ad7e0b4291ee
-  - 4bbaf77573ef
   - 1dd433d2c92c
-  - e10e776f2109
   - bb9fc9d46ea4
+  - e10e776f2109
+  - ad7e0b4291ee
+  - 7dd3fb35904f
+  - 4bbaf77573ef
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: t_test_two_samples
diff --git a/staging.gvl.org.au/text_manipulation.yml b/staging.gvl.org.au/text_manipulation.yml
index 8ac50072b..dc38f5da2 100644
--- a/staging.gvl.org.au/text_manipulation.yml
+++ b/staging.gvl.org.au/text_manipulation.yml
@@ -8,8 +8,8 @@ tools:
 - name: add_value
   owner: devteam
   revisions:
-  - 023f0a3760b3
   - 745871c0b055
+  - 023f0a3760b3
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_element_identifiers
@@ -21,20 +21,20 @@ tools:
 - name: column_arrange_by_header
   owner: bgruening
   revisions:
-  - 6c6d26ff01ff
   - f18f67056946
+  - 6c6d26ff01ff
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_maker
   owner: devteam
   revisions:
+  - 13b6f0007d9e
   - 02026300aa45
-  - 626658afe4cb
-  - 6e8d94597139
   - be25c075ed54
   - 6595517c2dd8
+  - 6e8d94597139
+  - 626658afe4cb
   - 464b9305180e
-  - 13b6f0007d9e
   - 9cd341095afd
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -47,8 +47,8 @@ tools:
 - name: concatenate_multiple_datasets
   owner: artbio
   revisions:
-  - 3a4694d4354f
   - 6f54dc6b37da
+  - 3a4694d4354f
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: concatenate_multiple_datasets
@@ -73,9 +73,9 @@ tools:
   owner: iuc
   revisions:
   - 9cc411a62277
+  - 34d29339abab
   - 37cde8134c6a
   - 557ec8d7087d
-  - 34d29339abab
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gff3_rebase
@@ -99,29 +99,29 @@ tools:
 - name: merge_cols
   owner: devteam
   revisions:
-  - dd40b1e9eebe
   - ae7843d06f8f
+  - dd40b1e9eebe
   - f2aac0c5c60d
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: query_tabular
   owner: iuc
   revisions:
-  - 33d61c89fb8d
+  - cf34c344508d
   - 83069b38aa85
+  - 3a6b78c39dca
   - 1ea4e668bf73
+  - 33d61c89fb8d
   - 623f3eb7aa48
-  - cf34c344508d
   - 2e8f945f7285
-  - 3a6b78c39dca
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: regex_find_replace
   owner: galaxyp
   revisions:
+  - 503bcd6ebe4b
   - 399da6b5ec21
   - ae8c4b2488e7
-  - 503bcd6ebe4b
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: replace_column_by_key_value_file
@@ -133,27 +133,27 @@ tools:
 - name: sqlite_to_tabular
   owner: iuc
   revisions:
-  - f768f6183386
   - b722161a845a
+  - f768f6183386
   - bce29ec10b78
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: table_compute
   owner: iuc
   revisions:
-  - 3bf5661c0280
   - 60ff16842fcd
+  - 3bf5661c0280
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: text_processing
   owner: bgruening
   revisions:
-  - f46f0e4f75c4
-  - 9ff72e942410
-  - a6f147a050a2
   - ddf54b12c295
+  - 74a8bef53a00
+  - a6f147a050a2
+  - f46f0e4f75c4
   - 0a8c6b61f0f4
+  - 9ff72e942410
   - d698c222f354
-  - 74a8bef53a00
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/variant_calling.yml b/staging.gvl.org.au/variant_calling.yml
index a06682aa4..d2bb49a44 100644
--- a/staging.gvl.org.au/variant_calling.yml
+++ b/staging.gvl.org.au/variant_calling.yml
@@ -2,8 +2,8 @@ tools:
 - name: breseq
   owner: iuc
   revisions:
-  - 82fb5e3bb93e
   - 85c57cc9b558
+  - 82fb5e3bb93e
   - 0d18a3ba2d1c
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -16,20 +16,20 @@ tools:
 - name: freebayes
   owner: devteam
   revisions:
-  - 57def2d7c093
-  - 04fa42777df9
   - ef2c525bd8cd
-  - a5937157062f
+  - 04fa42777df9
+  - 57def2d7c093
   - 156b60c1530f
+  - a5937157062f
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_alnqual
   owner: iuc
   revisions:
-  - 791f73caa0c8
-  - e61c9ac190ad
   - 435b157bed6d
   - 09d6e4693887
+  - 791f73caa0c8
+  - e61c9ac190ad
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_call
@@ -38,26 +38,26 @@ tools:
   - 3b4b2121842f
   - 65432c3abf6c
   - 074d44697036
-  - dfadc322b065
   - 03627f24605f
   - e1461b5c52a0
   - 4805fe3d8fda
+  - dfadc322b065
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_filter
   owner: iuc
   revisions:
+  - 701d134358ad
   - 9cb929f21cfa
   - 7dfca164d2e3
-  - 701d134358ad
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_indelqual
   owner: iuc
   revisions:
-  - 971e07ca4456
   - f4473557ffc7
   - 426d707dfc47
+  - 971e07ca4456
   - c27549b9aa1f
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -84,11 +84,11 @@ tools:
 - name: snippy
   owner: iuc
   revisions:
-  - c9a8ef2aa380
   - 5bbf9eada9c2
+  - d220115f882b
   - 9bccc8404a3c
   - fa016f1eea1a
-  - d220115f882b
+  - c9a8ef2aa380
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snp_dists
@@ -130,18 +130,18 @@ tools:
 - name: tb_variant_filter
   owner: iuc
   revisions:
+  - 3b1e7c170b10
   - 40f0591deda0
   - ee4a90760848
-  - 3b1e7c170b10
-  - 32f14a2723ec
   - e7aff4a85df5
+  - 32f14a2723ec
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbvcfreport
   owner: iuc
   revisions:
-  - 02d81b994ef5
   - 4934c0ac6197
+  - 02d81b994ef5
   - adc0645b945c
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/vcfbcf.yml b/staging.gvl.org.au/vcfbcf.yml
index 9dfca695f..d9ef3f3c8 100644
--- a/staging.gvl.org.au/vcfbcf.yml
+++ b/staging.gvl.org.au/vcfbcf.yml
@@ -2,13 +2,13 @@ tools:
 - name: bcftools_annotate
   owner: iuc
   revisions:
-  - e075b1be5abb
-  - 3f62d4939d54
-  - b7ea370b8f5d
-  - 6a88248893c4
-  - 8a2e296c07ef
   - 265fe0f9ea64
   - ebe5fc018e72
+  - 6a88248893c4
+  - b7ea370b8f5d
+  - 3f62d4939d54
+  - e075b1be5abb
+  - 8a2e296c07ef
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_annotate
@@ -20,13 +20,13 @@ tools:
 - name: bcftools_call
   owner: iuc
   revisions:
+  - 0fba2c15b40d
   - c37b684e7f4e
-  - 21687e35f066
   - 544cb432072b
-  - 22637b1a55bf
   - b03984136ce4
-  - 0fba2c15b40d
   - f0d44631365f
+  - 22637b1a55bf
+  - 21687e35f066
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_call
@@ -39,13 +39,13 @@ tools:
   owner: iuc
   revisions:
   - bf1f4994f104
-  - 8627b2b383b4
-  - 6d35a3780bfd
-  - 01d6b7d6365e
   - 8ca3647c90fd
+  - 6d35a3780bfd
+  - 3a7084316a6e
   - 8408bffd5616
+  - 01d6b7d6365e
+  - 8627b2b383b4
   - 0238f68ad641
-  - 3a7084316a6e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_cnv
@@ -58,13 +58,13 @@ tools:
   owner: iuc
   revisions:
   - d144af39073a
+  - 81426b3cf18b
   - 6b6c992d3a14
-  - 08296952d12f
   - 9b5abbf50d23
+  - 08296952d12f
   - f430a1ec7ee4
-  - 03e0645395d2
-  - 81426b3cf18b
   - 62ca6da715bf
+  - 03e0645395d2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_concat
@@ -76,13 +76,13 @@ tools:
 - name: bcftools_consensus
   owner: iuc
   revisions:
-  - 1829900b5dcd
-  - e522022137f6
-  - 95c6f3f4c77f
-  - d3081540d175
   - d37e313a41be
+  - 95c6f3f4c77f
   - 147de996e34f
+  - 1829900b5dcd
   - 2363ef414c9b
+  - d3081540d175
+  - e522022137f6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_consensus
@@ -95,11 +95,11 @@ tools:
   owner: iuc
   revisions:
   - b14ff40958cb
-  - 1137ce8efc1e
   - cacc9970727a
-  - 9b29129fb491
   - 348cd212dbad
   - 09f37afb3621
+  - 9b29129fb491
+  - 1137ce8efc1e
   - 92c0aff8b53e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -112,12 +112,12 @@ tools:
 - name: bcftools_convert_to_vcf
   owner: iuc
   revisions:
-  - 55c0e906c14c
-  - 367ba501b6eb
-  - 1f2183a23823
-  - de68c11034f6
   - 4935320a59a8
+  - de68c11034f6
+  - 1f2183a23823
+  - 55c0e906c14c
   - ecc9192912b8
+  - 367ba501b6eb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_to_vcf
@@ -129,12 +129,12 @@ tools:
 - name: bcftools_csq
   owner: iuc
   revisions:
-  - f01b2c9506b9
-  - 64a8f7dae3ad
   - 039ea3f1dea9
-  - 6c790a091c7c
-  - 7cbf3c66d4ad
+  - 64a8f7dae3ad
   - ae68ceb4cca3
+  - 7cbf3c66d4ad
+  - f01b2c9506b9
+  - 6c790a091c7c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_csq
@@ -146,13 +146,13 @@ tools:
 - name: bcftools_filter
   owner: iuc
   revisions:
-  - 33bd9301568c
-  - 277719af4dd7
-  - 656a916779fe
   - cdb7b4927742
-  - 6ea7170a016d
-  - e7452697afd9
   - 963a3635b2e1
+  - 656a916779fe
+  - 277719af4dd7
+  - 33bd9301568c
+  - e7452697afd9
+  - 6ea7170a016d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_filter
@@ -165,12 +165,12 @@ tools:
   owner: iuc
   revisions:
   - a1213a0b7b66
+  - 3eac729e66c9
   - 501bfb078342
   - b7f0f59baa7e
-  - 3eac729e66c9
-  - a29a2f40b665
   - 26d97cdd5410
   - 5a321fab1fe4
+  - a29a2f40b665
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_gtcheck
@@ -182,14 +182,14 @@ tools:
 - name: bcftools_isec
   owner: iuc
   revisions:
-  - 97d19c008d15
-  - 63aabc920911
   - 81e4014fa809
-  - 5f27e814a119
-  - 768d04526638
-  - d7d1663559e9
+  - 63aabc920911
+  - 97d19c008d15
   - 709dd8291b83
+  - d7d1663559e9
+  - 5f27e814a119
   - c803c34361e0
+  - 768d04526638
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_isec
@@ -201,13 +201,13 @@ tools:
 - name: bcftools_merge
   owner: iuc
   revisions:
+  - 86296490704e
+  - b931e65638b8
   - b1eba148b35b
   - 85ee7e6c4204
-  - 86296490704e
-  - 7ba36babba2d
   - 2215287d5cc9
-  - b931e65638b8
   - af163c712539
+  - 7ba36babba2d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_merge
@@ -219,15 +219,15 @@ tools:
 - name: bcftools_mpileup
   owner: iuc
   revisions:
-  - 31ea13dfe5e6
-  - f506df85c652
-  - 5660b21a0dbd
-  - 37757ffb4c5f
-  - 4e1d23e5c691
-  - ce9396ddcb2b
-  - 9c711df3258d
   - cf06b44624c7
   - 03191140c66a
+  - 37757ffb4c5f
+  - 9c711df3258d
+  - ce9396ddcb2b
+  - 31ea13dfe5e6
+  - 4e1d23e5c691
+  - 5660b21a0dbd
+  - f506df85c652
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_mpileup
@@ -239,12 +239,12 @@ tools:
 - name: bcftools_norm
   owner: iuc
   revisions:
-  - 6deb4d549bc9
+  - ebb2e12a6de1
   - a404f786a94c
-  - 19905c025d2a
-  - 48291658fdf6
+  - 6deb4d549bc9
   - 021693fdadaa
-  - ebb2e12a6de1
+  - 48291658fdf6
+  - 19905c025d2a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_norm
@@ -256,13 +256,13 @@ tools:
 - name: bcftools_plugin_counts
   owner: iuc
   revisions:
-  - 69d8b7567281
-  - 71c78e0eea52
+  - 97e8145d7e30
   - be6b217710af
-  - 5ad5d4243987
+  - 71c78e0eea52
   - f7879f1e77f9
-  - 97e8145d7e30
   - c450406f722b
+  - 5ad5d4243987
+  - 69d8b7567281
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_counts
@@ -274,13 +274,13 @@ tools:
 - name: bcftools_plugin_dosage
   owner: iuc
   revisions:
-  - 2514e684f8a3
-  - d31a2e310a52
   - 0fe007201caf
-  - 89720ec3d58e
   - 79f7a1acc2cd
-  - cc7f9a4e186b
   - 52f9e4a660e3
+  - cc7f9a4e186b
+  - 89720ec3d58e
+  - 2514e684f8a3
+  - d31a2e310a52
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_dosage
@@ -292,13 +292,13 @@ tools:
 - name: bcftools_plugin_fill_an_ac
   owner: iuc
   revisions:
+  - 99f4a81a47be
+  - 1411bef27a75
   - 80e6e399ccd0
   - 230e424bde67
-  - 0a62420cb9cd
   - 75ddd081f608
   - 026a989b7cee
-  - 1411bef27a75
-  - 99f4a81a47be
+  - 0a62420cb9cd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_an_ac
@@ -310,13 +310,13 @@ tools:
 - name: bcftools_plugin_fill_tags
   owner: iuc
   revisions:
+  - e493702b19eb
+  - bca7ce81688f
+  - 5acfca5a76af
   - ba20340426fe
+  - 444e6a756c35
   - 5808f77b2bb6
-  - bca7ce81688f
   - c01be0ab9806
-  - 444e6a756c35
-  - 5acfca5a76af
-  - e493702b19eb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_tags
@@ -328,13 +328,13 @@ tools:
 - name: bcftools_plugin_fixploidy
   owner: iuc
   revisions:
+  - d52b8947b269
+  - 68fec03a63b7
   - 12152af85697
-  - 4d236c696844
   - 7fe09ad6a939
   - f2482aa4862e
   - 157ffcdd3fa7
-  - d52b8947b269
-  - 68fec03a63b7
+  - 4d236c696844
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fixploidy
@@ -346,13 +346,13 @@ tools:
 - name: bcftools_plugin_impute_info
   owner: iuc
   revisions:
+  - cbe39e530cbf
   - 8dbce095986c
-  - 0e5d11004815
+  - 6f8e223f78f3
   - 29ba253e2e05
-  - cbe39e530cbf
-  - 27e2611639a9
   - 8f2fc0ab30fb
-  - 6f8e223f78f3
+  - 0e5d11004815
+  - 27e2611639a9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_impute_info
@@ -364,13 +364,13 @@ tools:
 - name: bcftools_plugin_mendelian
   owner: iuc
   revisions:
-  - e0a856def0b0
-  - 3ff5654b4e7d
   - af36eb5418fe
-  - a367a15c6de5
+  - 88bb477f45f7
+  - 3ff5654b4e7d
+  - e0a856def0b0
   - a8630d4fbaf8
   - 9708e3086f32
-  - 88bb477f45f7
+  - a367a15c6de5
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_mendelian
@@ -384,11 +384,11 @@ tools:
   revisions:
   - 03e30f06f15f
   - 96d0145c041a
+  - 31c096c6b156
+  - 6ce175385dd9
   - 5c9729d54721
   - 4ed46189d6c6
-  - 31c096c6b156
   - 2f4eef1f0d22
-  - 6ce175385dd9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_missing2ref
@@ -400,13 +400,13 @@ tools:
 - name: bcftools_plugin_setgt
   owner: iuc
   revisions:
+  - 2c4941386820
   - 11af7fce71cf
+  - 09f5e45a8212
+  - 262bba5b90ef
   - 40daf124be88
   - 46eb13bc2c73
-  - 2c4941386820
   - a1aad8b559c6
-  - 262bba5b90ef
-  - 09f5e45a8212
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_setgt
@@ -418,14 +418,14 @@ tools:
 - name: bcftools_plugin_tag2tag
   owner: iuc
   revisions:
-  - 743cd1472aeb
-  - f272b8ba0983
-  - 8cb121b6a1d2
-  - 6cbb9c47795c
   - 882b2e649602
-  - 0594ea1417c8
   - 4b796b58938b
+  - f272b8ba0983
+  - 6cbb9c47795c
   - 12038f59c0f4
+  - 0594ea1417c8
+  - 8cb121b6a1d2
+  - 743cd1472aeb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_tag2tag
@@ -437,13 +437,13 @@ tools:
 - name: bcftools_query_list_samples
   owner: iuc
   revisions:
-  - 238f78e38a8b
+  - dba06328556a
   - eccb508bb678
-  - adee7e8b746f
-  - cced6715f926
   - 18cf9de1cf73
+  - adee7e8b746f
   - 8c3ff4ef1190
-  - dba06328556a
+  - cced6715f926
+  - 238f78e38a8b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query_list_samples
@@ -455,13 +455,13 @@ tools:
 - name: bcftools_query
   owner: iuc
   revisions:
-  - 3ce32adc55b2
   - 9f36041495a3
+  - e0ad88dec40d
   - f64e7ca2efd2
   - c9935c9e8a24
-  - e53501abf992
   - a850902cac64
-  - e0ad88dec40d
+  - e53501abf992
+  - 3ce32adc55b2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query
@@ -474,12 +474,12 @@ tools:
   owner: iuc
   revisions:
   - 79489d5685dd
+  - fd3539749127
   - d43eb39b989e
-  - d68c43202172
   - b7be725976b6
-  - fd3539749127
   - 8057cf55fa41
   - 4db0695a6fc7
+  - d68c43202172
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_reheader
@@ -491,13 +491,13 @@ tools:
 - name: bcftools_roh
   owner: iuc
   revisions:
-  - 58091e1be01b
-  - 5296d26b0373
-  - 78cd8b69da4c
+  - 6a636d58dfc2
   - 1ccf0e7fb4f6
+  - 5296d26b0373
+  - 58091e1be01b
   - bdc67eeb0bc9
-  - 6a636d58dfc2
   - b0d39ef600a7
+  - 78cd8b69da4c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_roh
@@ -509,13 +509,13 @@ tools:
 - name: bcftools_stats
   owner: iuc
   revisions:
-  - b17394940c7a
-  - 4d3ce9dc1525
-  - a2f8dc22d7c0
-  - baa8823f8073
+  - b641062a2587
   - e8af591435d1
   - '388983871932'
-  - b641062a2587
+  - 4d3ce9dc1525
+  - b17394940c7a
+  - baa8823f8073
+  - a2f8dc22d7c0
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_stats
@@ -528,12 +528,12 @@ tools:
   owner: iuc
   revisions:
   - d1f8f55f564d
-  - 59fa8742285e
-  - 3a233c8eb814
-  - e6b5cbbf449b
+  - 3ca3de4e5291
   - 38d75661c235
   - abc3ced31cd1
-  - 3ca3de4e5291
+  - e6b5cbbf449b
+  - 3a233c8eb814
+  - 59fa8742285e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_view
@@ -559,22 +559,22 @@ tools:
 - name: vcfallelicprimitives
   owner: devteam
   revisions:
-  - 57a16b310fe8
   - a8a4f94aa321
+  - 57a16b310fe8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotate
   owner: devteam
   revisions:
-  - 01e0321aca98
   - 6faa2c4c71d2
+  - 01e0321aca98
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotategenotypes
   owner: devteam
   revisions:
-  - 84959112d9a6
   - 70bc6ced57f7
+  - 84959112d9a6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbedintersect
@@ -615,16 +615,16 @@ tools:
 - name: vcfdistance
   owner: devteam
   revisions:
-  - 48e458c721b3
   - 5822b40f3037
+  - 48e458c721b3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffilter
   owner: devteam
   revisions:
+  - 6b935ab36d7b
   - fa24bf0598f4
   - eae7c08ebb6f
-  - 6b935ab36d7b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffixup
@@ -644,15 +644,15 @@ tools:
 - name: vcfgeno2haplo
   owner: devteam
   revisions:
-  - b890055e07bd
   - a3dea556218d
+  - b890055e07bd
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfgenotypes
   owner: devteam
   revisions:
-  - a60ae8af21a1
   - f5653ed90dfd
+  - a60ae8af21a1
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfhethom
@@ -665,22 +665,22 @@ tools:
 - name: vcfleftalign
   owner: devteam
   revisions:
-  - 29f9b782727e
   - d2406f98a782
+  - 29f9b782727e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfprimers
   owner: devteam
   revisions:
-  - 17096387c0e6
   - d226a7327946
+  - 17096387c0e6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfrandomsample
   owner: devteam
   revisions:
-  - 6257ee3b50d3
   - 12b570dd0bc5
+  - 6257ee3b50d3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfselectsamples
@@ -693,8 +693,8 @@ tools:
 - name: vcfsort
   owner: devteam
   revisions:
-  - dd44c3f416c3
   - 5b7120c66efc
+  - dd44c3f416c3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcftools_annotate
@@ -724,7 +724,7 @@ tools:
 - name: vcfvcfintersect
   owner: devteam
   revisions:
-  - 166c4f50525f
   - 6f6bf10618d7
+  - 166c4f50525f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/staging.gvl.org.au/viral_tools.yml b/staging.gvl.org.au/viral_tools.yml
index 15250eab7..06370d956 100644
--- a/staging.gvl.org.au/viral_tools.yml
+++ b/staging.gvl.org.au/viral_tools.yml
@@ -2,7 +2,7 @@ tools:
 - name: quasitools
   owner: nml
   revisions:
-  - 9def47f3c1e4
   - 18aad692772a
+  - 9def47f3c1e4
   tool_panel_section_label: Viral Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/annotation.yml b/usegalaxy.org.au/annotation.yml
index f9f4825fa..d6c73e4ae 100644
--- a/usegalaxy.org.au/annotation.yml
+++ b/usegalaxy.org.au/annotation.yml
@@ -36,38 +36,38 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
+  - 133f36c29579
+  - cd2480f35935
   - f29602ae449e
-  - 3e1f6f6d557e
-  - b5d8e5475247
   - 4f2967b27e67
-  - 1aae04680c4b
-  - cd2480f35935
+  - b5d8e5475247
+  - 3e1f6f6d557e
   - 44018dd6b447
-  - 133f36c29579
   - fe3ca740a485
+  - 1aae04680c4b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 6519ebe25019
   - 7be22100e5e1
   - dc027fa56d55
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - 09855551d713
-  - ca6d970d931c
   - 28433faa6e42
+  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,8 +79,8 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 8fd427007e93
   - 7355bbf5e05f
+  - 8fd427007e93
   - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -106,9 +106,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
   - d9c3016f7283
   - 9d1fbff733cf
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,56 +126,56 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
-  - 756376aeb1ae
   - 582fd74dc2a1
-  - b6b5cd37f2a2
-  - 14f588312c56
+  - 3bbe70fef6df
   - 9f2455341fac
+  - 14f588312c56
+  - b6b5cd37f2a2
+  - 756376aeb1ae
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - 0ffe5be70caf
+  - 73428a792541
   - 989f7c061f35
+  - 30fb23d4c31c
   - 1691af4a0d17
-  - 73428a792541
   - a230ea445788
-  - 0ffe5be70caf
-  - 30fb23d4c31c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
   - e94187d661df
+  - 30f08d74024f
+  - 5a5ae61da69c
   - 494f0bb4a993
   - b69c46064ec7
-  - 5a5ae61da69c
-  - 30f08d74024f
   - 563a19373357
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 7abc5f6dd595
-  - 1bc5a03faf2e
+  - d6c7106b7b2e
   - f77d7b685bb3
+  - 1bc5a03faf2e
+  - 7abc5f6dd595
   - 2bba2ff070d9
   - f31125bb85ea
-  - d6c7106b7b2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - 52af33194019
+  - 520e30695ec3
   - fed64e676186
   - d3af38b9c7e1
-  - 520e30695ec3
   - 54961e026fe4
   - b3cf4684e9c7
-  - 52af33194019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -187,9 +187,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 07d7991bf205
-  - 2aea122fbd25
   - 79261884facd
+  - 2aea122fbd25
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -201,10 +201,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
+  - 8b3e3657034e
+  - ef2ad746b589
   - 602de62d995b
   - 43798b4caee0
-  - ef2ad746b589
-  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -213,6 +213,12 @@ tools:
   - de3e053bd6a5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: helixer
+  owner: genouest
+  revisions:
+  - 7bc75dd0f782
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hmmer3
   owner: iuc
   revisions:
@@ -222,15 +228,15 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - 74810db257cc
   - c55643c3d813
+  - 74810db257cc
   - 98cafcbd2578
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -249,16 +255,16 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 3c1a01127868
   - 370c210d9541
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
@@ -289,10 +295,10 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - a17498c603ec
   - 8a22554cdde2
   - d643e3b03500
   - bf68eb663bc3
-  - a17498c603ec
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -311,8 +317,8 @@ tools:
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 41bfbaf3c959
   - 8661b2607b7e
+  - 41bfbaf3c959
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -324,22 +330,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 5a29ab10dba6
   - 68693743661e
-  - 268d162b9c49
+  - 5b80f544c67f
   - 5c7b70713fb5
+  - 268d162b9c49
   - 8f92c2b26e6d
   - cfcf33df7fc0
+  - 5a29ab10dba6
   - 9473cd297a76
-  - 5b80f544c67f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
+  - 5fab4f81391d
   - 09d6806c609e
   - 2b3e65a4252f
-  - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sortmerna
@@ -358,15 +364,15 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 809dfc93d593
-  - 037a11682176
+  - ac8250086ac3
   - 200c378d85f3
-  - 2c68b0c38785
-  - 37213cf56392
-  - e1a9d6fd258d
   - 45083d070fb8
+  - 037a11682176
+  - 2c68b0c38785
   - ba6f87115e13
-  - ac8250086ac3
+  - 809dfc93d593
+  - e1a9d6fd258d
+  - 37213cf56392
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
diff --git a/usegalaxy.org.au/assembly.yml b/usegalaxy.org.au/assembly.yml
index c0617e8d8..2fa40bd13 100644
--- a/usegalaxy.org.au/assembly.yml
+++ b/usegalaxy.org.au/assembly.yml
@@ -3,41 +3,41 @@ tools:
   owner: iuc
   revisions:
   - 841084c5fc46
+  - 0e93176640ac
+  - 553bfe8bd0b5
+  - a929ce596a34
   - 7547fcab5d19
   - 890b794c997d
-  - fa5259cc561b
-  - a929ce596a34
-  - 0e93176640ac
   - 8f1b150a2487
-  - 553bfe8bd0b5
+  - fa5259cc561b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bandage
   owner: iuc
   revisions:
-  - b2860df42e16
-  - 94fe43e75ddc
   - b9e31c5c01c7
-  - ddddce450736
-  - 067592b6b312
+  - 94fe43e75ddc
   - 21e491ad532a
+  - 067592b6b312
+  - ddddce450736
+  - b2860df42e16
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bellerophon
   owner: iuc
   revisions:
-  - 321347bd0494
   - 25ca5d73aedf
+  - 321347bd0494
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bionano_scaffold
   owner: bgruening
   revisions:
   - 5258e18bbe23
-  - 3371c5bdc17a
   - faee8629b460
-  - 22286dab5aa1
   - a7f16f24e9a1
+  - 3371c5bdc17a
+  - 22286dab5aa1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: blobtoolkit
@@ -49,29 +49,29 @@ tools:
 - name: busco
   owner: iuc
   revisions:
+  - bb935709506a
+  - 1440ae06552f
+  - 0d243f458b53
+  - e824f5d958d0
+  - 602fb8e63aa7
   - 41030a6c03b7
-  - cf13a1e03e5b
-  - 1e62c28ba91d
   - 46ae58b1d792
   - 4048d82f0c88
-  - 2dd755c1c6ff
-  - e824f5d958d0
-  - 1440ae06552f
-  - e4bd1e99bacf
-  - bb935709506a
-  - 2a5b8b9936bf
   - 5ecdeca79a0d
-  - 0d243f458b53
-  - 602fb8e63aa7
+  - 2dd755c1c6ff
+  - 1e62c28ba91d
   - 94170eee0ad8
+  - cf13a1e03e5b
+  - 2a5b8b9936bf
+  - e4bd1e99bacf
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: canu
   owner: bgruening
   revisions:
   - 86f150c8019d
-  - 5732f959936a
   - c5b7390290b1
+  - 5732f959936a
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cap3
@@ -83,28 +83,28 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
-  - 1ce9b1d72ec3
   - 276f5d8712d5
-  - 8d4f03b5fe9d
   - 3ee0ef312022
   - cb8dfd28c16f
+  - 8d4f03b5fe9d
   - e27815e82dd4
+  - 1ce9b1d72ec3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genomescope
   owner: iuc
   revisions:
   - 01210c4e9144
-  - b2f674562a18
   - 3169a38c2656
+  - b2f674562a18
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: getorganelle
   owner: iuc
   revisions:
+  - 7348b69e5109
   - 06bcf65179fb
   - 8b330a577046
-  - 7348b69e5109
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfastats
@@ -112,8 +112,8 @@ tools:
   revisions:
   - 3fba9c77550a
   - 690c2caa367e
-  - 5127a713de83
   - 3ef480892a9f
+  - 5127a713de83
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hapcut2
@@ -125,21 +125,21 @@ tools:
 - name: hifiasm
   owner: bgruening
   revisions:
-  - f3c89da3af16
-  - 60024a528cbd
-  - ec9e21e9c71b
-  - 71740308d412
-  - 5bec28269d95
-  - 5f625c63b8bc
+  - 41cea2aa2dce
   - 0ee0c3089254
-  - 6505bd37670d
   - 2061fb3b81b4
+  - 60024a528cbd
+  - 6505bd37670d
   - 3f7be05a1597
   - 9ef6920c3089
+  - f3c89da3af16
+  - ec9e21e9c71b
+  - 5f625c63b8bc
+  - 5bec28269d95
   - da9d8bf98802
-  - 045c7c3d8e59
-  - 41cea2aa2dce
+  - 71740308d412
   - 366a11d316a7
+  - 045c7c3d8e59
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: links
@@ -157,19 +157,19 @@ tools:
 - name: megahit
   owner: iuc
   revisions:
-  - 14ddfc8ffb93
-  - de387b2b2803
-  - 7518ee87b53d
   - a96f3ad4e0d8
+  - 7518ee87b53d
+  - de387b2b2803
+  - 14ddfc8ffb93
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: merqury
   owner: iuc
   revisions:
+  - 09c589057ee8
   - 39edec572bae
-  - 9d79beb19ac3
   - f8113c25bc6b
-  - 09c589057ee8
+  - 9d79beb19ac3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: meryl
@@ -184,12 +184,12 @@ tools:
   owner: nml
   revisions:
   - e731ea24e48d
+  - eb7a370f6588
+  - fd128c111ab0
   - 2ecf5a570907
+  - 3ca2d2a9068c
   - 606b09cc9860
   - f338e9942b27
-  - fd128c111ab0
-  - 3ca2d2a9068c
-  - eb7a370f6588
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minia
@@ -201,11 +201,11 @@ tools:
 - name: miniasm
   owner: iuc
   revisions:
-  - 8b6d0d85252b
   - 73a3846701e1
+  - 80d1250bd5fd
   - 8dee0218ac7d
   - a7b889b90140
-  - 80d1250bd5fd
+  - 8b6d0d85252b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitobim
@@ -217,9 +217,9 @@ tools:
 - name: novoplasty
   owner: iuc
   revisions:
-  - 7c2f5268d01c
-  - 15200570e926
   - 64a1c751d99b
+  - 15200570e926
+  - 7c2f5268d01c
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pilon
@@ -232,11 +232,11 @@ tools:
   owner: iuc
   revisions:
   - bbe19ef04a74
-  - 02831bf9e95f
   - 511e5e3cd55e
-  - dfb8a4497339
+  - 02831bf9e95f
   - d256a51a656b
   - 8fef980d48b5
+  - dfb8a4497339
   - 2b16ba799da9
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -252,54 +252,54 @@ tools:
   owner: iuc
   revisions:
   - 7594365c546b
-  - 3061c8b029e5
-  - 6fcbee531de6
   - 72472698a2df
   - ebb0dcdb621a
-  - 342a1d1fed7b
   - 59db8ea8c845
-  - 875d0f36d66f
   - 675488238c96
+  - 875d0f36d66f
+  - 342a1d1fed7b
+  - 6fcbee531de6
+  - 3061c8b029e5
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: racon
   owner: bgruening
   revisions:
-  - cd06929b224b
-  - 78c533842eeb
+  - 39bed8de8017
+  - aa39b19ca11e
   - a199cd7ac344
   - d865b62f501c
-  - aa39b19ca11e
-  - 39bed8de8017
+  - cd06929b224b
+  - 78c533842eeb
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raven
   owner: iuc
   revisions:
-  - 33b7d8481a76
-  - f11b994b7eb2
   - f8564b2d7f63
-  - 2b2a352488fa
+  - f11b994b7eb2
   - 3edba9afc9bc
+  - 33b7d8481a76
+  - 2b2a352488fa
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnaspades
   owner: iuc
   revisions:
-  - ef69617ecb42
-  - e122f9101584
+  - 378e55aeeb25
   - 1d06c8b38e77
+  - e122f9101584
+  - ef69617ecb42
   - 53c2bc8c2ae3
-  - 378e55aeeb25
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: salsa
   owner: iuc
   revisions:
-  - 9a22227bb6d0
-  - f77f7a7f3b83
   - ab5b7f6b7198
   - ba7b0f11e470
+  - 9a22227bb6d0
+  - f77f7a7f3b83
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: shasta
@@ -311,13 +311,13 @@ tools:
 - name: shovill
   owner: iuc
   revisions:
-  - ad80238462c1
-  - 83ead2be47b2
-  - 865119fcb694
   - d9f6a00b6db7
   - f698c7604b3b
+  - 83ead2be47b2
   - ee17a294d3a3
+  - 865119fcb694
   - 196a599ec43d
+  - ad80238462c1
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: smudgeplot
@@ -331,92 +331,92 @@ tools:
 - name: spades_biosyntheticspades
   owner: iuc
   revisions:
-  - 7490b213baa9
-  - 904bf932cf78
   - 051fd2db8a27
   - 1bb12736175c
+  - 7490b213baa9
   - 1fc82fe7ebef
+  - 904bf932cf78
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_coronaspades
   owner: iuc
   revisions:
-  - 34305b013402
-  - d6e617c4e338
   - ad8b536d1caa
+  - d6e617c4e338
   - fee85957cebe
   - 808b3a0a6716
+  - 34305b013402
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaplasmidspades
   owner: iuc
   revisions:
-  - 21da31ed41a1
+  - e5a3b75a271f
+  - 8d4b90bf9caf
   - b8002c3f7141
+  - 21da31ed41a1
   - 6b5a5842531e
-  - 8d4b90bf9caf
-  - e5a3b75a271f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_metaviralspades
   owner: iuc
   revisions:
-  - 9de69775f512
   - 328aa71f0f3c
-  - 2a10645aeadd
   - 86f66ab58e14
+  - 2a10645aeadd
+  - 9de69775f512
   - f1532cb33c75
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_plasmidspades
   owner: iuc
   revisions:
-  - 340bc17f49cf
   - 85fb02c43042
-  - e41dcb0e913b
-  - 1708851f8804
   - 6aad515a5270
+  - 340bc17f49cf
+  - 1708851f8804
+  - e41dcb0e913b
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades_rnaviralspades
   owner: iuc
   revisions:
-  - d159735a6a9f
   - b65a43f70b99
-  - b3490b036c5a
   - d5fb354f745d
   - 249f6a28c751
+  - b3490b036c5a
+  - d159735a6a9f
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: spades
   owner: nml
   revisions:
-  - b7829778729f
-  - 7897763d14ec
-  - 9006e5836729
-  - 33368fec3b70
   - d2d1df21dfb9
   - dd7ad84f3943
+  - 7897763d14ec
+  - b7829778729f
+  - 33368fec3b70
+  - 9006e5836729
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_cluster
   owner: iuc
   revisions:
   - 505a9833ab5d
-  - 189e837009c9
   - 6f4c8ad6ea01
-  - ced385aa976d
+  - 189e837009c9
   - 8f631679571f
+  - ced385aa976d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_consensus
   owner: iuc
   revisions:
-  - 19bdfd1e6fe3
   - d40ed4eb0c0e
-  - e59bee4565b3
-  - 356afed970b4
   - 9ded6109434a
+  - 19bdfd1e6fe3
+  - 356afed970b4
+  - e59bee4565b3
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_partition
@@ -425,55 +425,55 @@ tools:
   - 4688ae3b49b5
   - 6dd935e4984b
   - b23249f81bc4
-  - 80a17897564d
   - ebd801e712bc
+  - 80a17897564d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_reconcile_msa
   owner: iuc
   revisions:
   - b64696992ee9
-  - cb1e3db43020
+  - b5e35a2ca4f3
   - 937ea677d437
   - 59bd28f6265d
-  - b5e35a2ca4f3
+  - cb1e3db43020
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trycycler_subsample
   owner: iuc
   revisions:
-  - 6015aa0303f2
-  - cb4768eeca3b
   - 383bb5ad32e2
-  - 05bd7504fdb2
   - 2628f6790eda
+  - 05bd7504fdb2
+  - cb4768eeca3b
+  - 6015aa0303f2
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unicycler
   owner: iuc
   revisions:
   - e92675014ac9
-  - 0a3a602cd1e3
   - 9e3e80cc4ad4
-  - 8f9f06995f98
   - 6e26c9afd301
+  - 0a3a602cd1e3
+  - 8f9f06995f98
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvet
   owner: devteam
   revisions:
-  - 5da9a0e2fb2d
-  - 8d09f8be269e
   - 920677cd220f
+  - 8d09f8be269e
   - 08256557922f
+  - 5da9a0e2fb2d
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: velvetoptimiser
   owner: simon-gladman
   revisions:
+  - 37d88f41c810
   - 82398ba86ba7
   - 4a53b89fa703
-  - 37d88f41c810
   tool_panel_section_label: Assembly
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: yahs
diff --git a/usegalaxy.org.au/bacterial_typing.yml b/usegalaxy.org.au/bacterial_typing.yml
index bd3562396..f1565f7b7 100644
--- a/usegalaxy.org.au/bacterial_typing.yml
+++ b/usegalaxy.org.au/bacterial_typing.yml
@@ -2,24 +2,24 @@ tools:
 - name: integron_finder
   owner: iuc
   revisions:
-  - 1ae00120dd24
   - 4768f7f8e93f
+  - 1ae00120dd24
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mlst
   owner: iuc
   revisions:
   - 8e8dc9a1e3e5
-  - 31812e7a1315
-  - ded48b36f3b7
   - 1f5641a52664
+  - ded48b36f3b7
+  - 31812e7a1315
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sistr_cmd
   owner: nml
   revisions:
-  - 17fcac7ddf54
   - 5c8ff92e38a9
+  - 17fcac7ddf54
   - 24a7a95867b0
   tool_panel_section_label: Bacterial Typing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bb_tools.yml b/usegalaxy.org.au/bb_tools.yml
index 26700f340..05eb64807 100644
--- a/usegalaxy.org.au/bb_tools.yml
+++ b/usegalaxy.org.au/bb_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: bbtools_bbduk
   owner: iuc
   revisions:
+  - 159b04e36791
   - 204a131e47db
   - a9c9d768b751
-  - 159b04e36791
   tool_panel_section_label: BB Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/bed.yml b/usegalaxy.org.au/bed.yml
index a9822b853..843edaed0 100644
--- a/usegalaxy.org.au/bed.yml
+++ b/usegalaxy.org.au/bed.yml
@@ -2,16 +2,16 @@ tools:
 - name: bedtools
   owner: iuc
   revisions:
-  - 0a5c785ac6db
   - a68aa6c1204a
-  - e19bebe96cd2
-  - dde39ba9c031
+  - 0a5c785ac6db
+  - b28e0cfa7ba1
   - a8eabd2838f6
+  - 07e8b80f278c
+  - dde39ba9c031
+  - ce3c7f062223
+  - e19bebe96cd2
   - 87ee588b3d45
   - a1a923cd89e8
-  - b28e0cfa7ba1
-  - 07e8b80f278c
   - 589e7e57fd6d
-  - ce3c7f062223
   tool_panel_section_label: BED
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/blast.yml b/usegalaxy.org.au/blast.yml
index 3a46bb36b..be147a79e 100644
--- a/usegalaxy.org.au/blast.yml
+++ b/usegalaxy.org.au/blast.yml
@@ -8,8 +8,8 @@ tools:
 - name: diamond
   owner: bgruening
   revisions:
-  - f921014aba5a
   - 62c9df8382c2
+  - f921014aba5a
   - e8ac2b53f262
   - 54f751e413f4
   tool_panel_section_label: Blast +
@@ -18,13 +18,13 @@ tools:
   owner: devteam
   revisions:
   - 2889433c7ae1
-  - e25d3acf6e68
-  - 0e3cf9594bb7
-  - d999e774072a
   - acf4e47b734c
   - a52d2d93e595
-  - 5edc472ec434
   - 6f386c5dc4fb
+  - e25d3acf6e68
+  - d999e774072a
+  - 5edc472ec434
+  - 0e3cf9594bb7
   tool_panel_section_label: Blast +
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: taxonomy_krona_chart
diff --git a/usegalaxy.org.au/chemicaltoolbox.yml b/usegalaxy.org.au/chemicaltoolbox.yml
index d7d90728a..6489a5e0d 100644
--- a/usegalaxy.org.au/chemicaltoolbox.yml
+++ b/usegalaxy.org.au/chemicaltoolbox.yml
@@ -2,13 +2,13 @@ tools:
 - name: ambertools_acpype
   owner: chemteam
   revisions:
-  - da6bd1975a71
-  - 6ca543ec1bf8
-  - 27ee142314a9
+  - c8cdde00b105
   - 095ad4d096d1
+  - da6bd1975a71
   - 710301bc46fa
+  - 6ca543ec1bf8
   - f4230f116196
-  - c8cdde00b105
+  - 27ee142314a9
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: autodock_vina_prepare_box
@@ -80,15 +80,15 @@ tools:
 - name: ctb_frankenstein_ligand
   owner: bgruening
   revisions:
-  - 7255688c77f3
   - 8e214e52e461
+  - 7255688c77f3
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: enumerate_charges
   owner: bgruening
   revisions:
-  - 67ee76f0e497
   - 2a868592ebcb
+  - 67ee76f0e497
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fpocket
@@ -106,10 +106,10 @@ tools:
 - name: gmx_editconf
   owner: chemteam
   revisions:
+  - 79cfd9ead848
   - 0fac8e2afc13
-  - bfb65cb551d8
   - 88076940fa94
-  - 79cfd9ead848
+  - bfb65cb551d8
   - 3b8a9d5ced85
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -117,11 +117,11 @@ tools:
   owner: chemteam
   revisions:
   - 55918daa5651
+  - eb6564a60136
   - d532b7e5f64b
+  - b46d4b4d995c
   - 715cd0e87781
   - f5d979cb4b54
-  - b46d4b4d995c
-  - eb6564a60136
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_energy
@@ -129,60 +129,60 @@ tools:
   revisions:
   - dae135dfd519
   - 5579659312e6
-  - f26afd1b7104
   - fdf2cc80adb5
   - d2f955aea23a
+  - f26afd1b7104
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_merge_topology_files
   owner: chemteam
   revisions:
-  - d1d0efda35c0
   - bc31d02be922
   - 319a28774da9
+  - d1d0efda35c0
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_setup
   owner: chemteam
   revisions:
-  - 070e3ecc3fda
-  - 4da9ee404eab
-  - 2c349b027a01
   - ed736e6eee39
+  - 2c349b027a01
+  - 4da9ee404eab
+  - 070e3ecc3fda
   - cac1886249a2
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_sim
   owner: chemteam
   revisions:
-  - c0c9a5024177
-  - 2e219a2d9327
-  - da8753545526
   - 525ca7c8065f
-  - 73008ef1f487
-  - 807aa4c9293d
   - f197e34c33a9
   - d1f803b5943c
+  - 807aa4c9293d
+  - 2e219a2d9327
+  - da8753545526
+  - 73008ef1f487
+  - c0c9a5024177
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmx_solvate
   owner: chemteam
   revisions:
-  - 2c8ed1b52bf7
+  - 27ea4e1a3f95
   - c4fbab8e03c5
+  - 2c8ed1b52bf7
   - 61094e01eff9
-  - 27ea4e1a3f95
-  - 7568ae18908a
   - 1809414a9454
+  - 7568ae18908a
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: md_converter
   owner: chemteam
   revisions:
+  - 730ef07b90ae
+  - ba83f0923369
   - ccfbd956a2d3
   - 79e8ab8f1e81
-  - ba83f0923369
-  - 730ef07b90ae
   - d7ec25187599
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -203,8 +203,8 @@ tools:
   owner: bgruening
   revisions:
   - e6011617c748
-  - b59c91adeac1
   - e2c36f62e22f
+  - b59c91adeac1
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openbabel_svg_depiction
@@ -236,8 +236,8 @@ tools:
   revisions:
   - bf99565cec1f
   - 85fad59f8168
-  - d4c67ced6abc
   - 9b48456a96fe
+  - d4c67ced6abc
   tool_panel_section_label: ChemicalToolBox
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vmd_hbonds
diff --git a/usegalaxy.org.au/chip_seq.yml b/usegalaxy.org.au/chip_seq.yml
index e8bd01e13..1f1dcc296 100644
--- a/usegalaxy.org.au/chip_seq.yml
+++ b/usegalaxy.org.au/chip_seq.yml
@@ -3,8 +3,8 @@ tools:
   owner: bgruening
   revisions:
   - fa56d93f7980
-  - 163688bb8f73
   - c97a786e8fb5
+  - 163688bb8f73
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: genrich
@@ -23,24 +23,24 @@ tools:
 - name: macs2
   owner: iuc
   revisions:
-  - 424aefbd7777
-  - 640d3af5d833
   - 495a4173006f
-  - f5d67c722d67
+  - 640d3af5d833
   - 86e2413cf3f8
+  - 424aefbd7777
+  - f5d67c722d67
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rnachipintegrator
   owner: pjbriggs
   revisions:
-  - b695071de766
   - 087d9872fb0d
+  - b695071de766
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sicer
   owner: devteam
   revisions:
-  - 5c2cc3b58c7d
   - 74c9214cc8e6
+  - 5c2cc3b58c7d
   tool_panel_section_label: ChiP-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/collection_operations.yml b/usegalaxy.org.au/collection_operations.yml
index 518e729a3..4967b12a4 100644
--- a/usegalaxy.org.au/collection_operations.yml
+++ b/usegalaxy.org.au/collection_operations.yml
@@ -9,9 +9,9 @@ tools:
 - name: collapse_collections
   owner: nml
   revisions:
-  - 90981f86000f
-  - 33151a38533a
   - 830961c48e42
+  - 33151a38533a
+  - 90981f86000f
   - 25136a2b0cfe
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -25,9 +25,9 @@ tools:
 - name: split_file_to_collection
   owner: bgruening
   revisions:
-  - 0046692724f9
   - 6cbe2f30c2d7
   - baabc30154cd
+  - 0046692724f9
   tool_panel_section_label: Collection Operations
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unzip
diff --git a/usegalaxy.org.au/convert_formats.yml b/usegalaxy.org.au/convert_formats.yml
index 757ac9b06..d93fc3d25 100644
--- a/usegalaxy.org.au/convert_formats.yml
+++ b/usegalaxy.org.au/convert_formats.yml
@@ -8,28 +8,28 @@ tools:
 - name: biom_add_metadata
   owner: iuc
   revisions:
-  - 4a6ee918c13a
-  - 367b1ed91207
-  - e3cbd2287f63
-  - 5e1240a87bcb
-  - dad9da48a09a
   - 0b3c3ad92827
   - a3b86937ead6
   - 6ef0b5664c69
+  - 4a6ee918c13a
+  - e3cbd2287f63
+  - dad9da48a09a
   - f3a19509108a
+  - 367b1ed91207
+  - 5e1240a87bcb
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: biom_convert
   owner: iuc
   revisions:
-  - 54ccb7e1f49a
-  - 584008e574b2
   - 501c21cce614
-  - 72ed72122deb
-  - e525f9ffb9ac
   - a4db66553a61
+  - 584008e574b2
   - e177a8ea0bf1
+  - e525f9ffb9ac
   - 1b5fc03380d4
+  - 72ed72122deb
+  - 54ccb7e1f49a
   - bd46669113b9
   - 33c99804a32f
   tool_panel_section_label: Convert Formats
@@ -56,23 +56,23 @@ tools:
 - name: fastq_to_fasta
   owner: devteam
   revisions:
-  - 186b8d913e6c
-  - 8979c288aefb
   - 77b41c89d856
+  - 8979c288aefb
+  - 186b8d913e6c
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_to_tabular
   owner: devteam
   revisions:
-  - 4b347702c4aa
   - 614a63f14adf
+  - 4b347702c4aa
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gfa_to_fa
   owner: iuc
   revisions:
-  - e33c82b63727
   - 8e9d604e92f4
+  - e33c82b63727
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gffcompare_to_bed
@@ -85,8 +85,8 @@ tools:
   owner: devteam
   revisions:
   - 4dea02886337
-  - 154d00cbbf2d
   - 3e436657dcd0
+  - 154d00cbbf2d
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gtftobed12
@@ -104,8 +104,8 @@ tools:
 - name: mz_to_sqlite
   owner: galaxyp
   revisions:
-  - f5c632894818
   - 8190f6083c0d
+  - f5c632894818
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tabular_to_fasta
@@ -124,11 +124,11 @@ tools:
 - name: thermo_raw_file_converter
   owner: galaxyp
   revisions:
-  - b9b385097f13
-  - 92ac8e086317
   - 63769c4217a7
-  - 19e45916daf9
   - 26c6706bfb07
+  - 19e45916daf9
+  - b9b385097f13
+  - 92ac8e086317
   tool_panel_section_label: Convert Formats
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2maf
diff --git a/usegalaxy.org.au/deeptools.yml b/usegalaxy.org.au/deeptools.yml
index ba80330d8..e8de9acb1 100644
--- a/usegalaxy.org.au/deeptools.yml
+++ b/usegalaxy.org.au/deeptools.yml
@@ -2,120 +2,120 @@ tools:
 - name: deeptools_bam_compare
   owner: bgruening
   revisions:
+  - a1ca9bccc7f2
+  - 268e91e540ee
+  - de72ba3ed6f2
   - 29451af70c52
-  - e821645ef8fc
   - c929a006727f
-  - de72ba3ed6f2
-  - 268e91e540ee
+  - e821645ef8fc
   - 5f6d123679f4
-  - a1ca9bccc7f2
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_coverage
   owner: bgruening
   revisions:
-  - 5d11599b8a7d
-  - 0e49b109abc2
   - 12af64f93288
-  - 2d2cf5c1ea8a
-  - 0e143b4c3987
   - bb1e4f63e0e6
+  - 2d2cf5c1ea8a
   - 7a7fd0f5f15d
+  - 5d11599b8a7d
+  - 0e143b4c3987
+  - 0e49b109abc2
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bam_pe_fragmentsize
   owner: bgruening
   revisions:
   - 1d848bc4585f
+  - 81b1e3e1fc6c
   - 195e98217334
+  - dc059492a995
   - c06951d10364
-  - 81b1e3e1fc6c
   - 7c1beb6d6eca
-  - dc059492a995
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_bigwig_compare
   owner: bgruening
   revisions:
-  - a67ac707496a
   - 93eb012d9eed
-  - bfff7454b59a
-  - 26e7304d6737
+  - 71aa86af6762
   - 3d211717a775
+  - bfff7454b59a
+  - a67ac707496a
   - 07418a30ed01
-  - 71aa86af6762
+  - 26e7304d6737
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_gc_bias
   owner: bgruening
   revisions:
+  - 56d5b797ce84
+  - 29fcfd36e90a
+  - 2bc10a9ca58b
   - dd0b7398bb96
   - b8858746dc1f
-  - 56d5b797ce84
   - 26983857c91a
-  - 2bc10a9ca58b
-  - 29fcfd36e90a
   - 5be24eba848d
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix_operations
   owner: bgruening
   revisions:
-  - 72bfafe3330b
-  - e6d0bff01239
-  - c3e012dfe21f
-  - 7e6bcd2e5128
-  - ee3a1b0f45f1
   - 9384cd033f30
   - 7ef978dc1b8a
+  - ee3a1b0f45f1
+  - 7e6bcd2e5128
+  - e6d0bff01239
+  - c3e012dfe21f
+  - 72bfafe3330b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_compute_matrix
   owner: bgruening
   revisions:
+  - 514fa53b5efb
   - fd1275e01605
-  - 167788df3b46
   - d9a637e83828
+  - b73e213add0c
   - a60c359ec43c
   - 9470f29702f8
   - fb9cf9c97ec4
-  - b73e213add0c
-  - 514fa53b5efb
+  - 167788df3b46
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_correct_gc_bias
   owner: bgruening
   revisions:
   - a02cfa31e9cb
-  - ca0616bb2cdf
-  - 2c37ce318bc3
-  - 5bffaa8354a1
-  - c34d11ea4ba6
   - e479c7ca5570
+  - 2c37ce318bc3
   - 86febdcc4283
+  - c34d11ea4ba6
+  - 5bffaa8354a1
+  - ca0616bb2cdf
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bam_summary
   owner: bgruening
   revisions:
+  - 004aea905d4d
   - 78f405266706
+  - 69a8621ca2f0
   - 2d466b530754
   - 01fb6a7654e6
-  - 004aea905d4d
   - 1fcb7adc39b8
-  - 69a8621ca2f0
   - 192ef85c0b0b
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_multi_bigwig_summary
   owner: bgruening
   revisions:
+  - d580d6acd1df
   - 137c4beed34b
+  - 2f9e4843f480
+  - 3c9f0c486cca
   - d9ce4897dbb2
   - 9ecba5e225a6
-  - 3c9f0c486cca
-  - 2f9e4843f480
-  - d580d6acd1df
   - 459cfa861f0b
   - db940c262830
   tool_panel_section_label: DeepTools
@@ -123,84 +123,84 @@ tools:
 - name: deeptools_plot_correlation
   owner: bgruening
   revisions:
-  - fd408d755394
+  - fbe773640707
+  - bd7db9e2f2cb
   - 32e451def88c
   - bad3ca889618
-  - bd7db9e2f2cb
   - f264afa9fa6f
+  - fd408d755394
   - 2c66e43f1c86
-  - fbe773640707
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_coverage
   owner: bgruening
   revisions:
   - 7fda5607e777
-  - 56bce3c82278
+  - 4e12ea27f788
+  - 231994413f89
+  - 3b9d990a0a0e
   - 9368fbc49c8b
   - 7e361d147872
-  - 3b9d990a0a0e
-  - 231994413f89
-  - 4e12ea27f788
+  - 56bce3c82278
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_enrichment
   owner: bgruening
   revisions:
-  - b1779366c8e9
-  - c03c3384cd81
-  - e65d16fb2724
-  - d9114ef1c8a5
+  - ce4ce3316f74
   - 94ca68515826
+  - d9114ef1c8a5
+  - e65d16fb2724
   - 4431f39ede55
-  - ce4ce3316f74
+  - b1779366c8e9
+  - c03c3384cd81
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_fingerprint
   owner: bgruening
   revisions:
-  - b88ebb3672a1
-  - 4ed32329e0ed
-  - 23f7c5f1fdaf
-  - 2da482e408b8
-  - f8fc4e5aff9d
   - 793665fff0f8
+  - f8fc4e5aff9d
+  - 23f7c5f1fdaf
   - d57251071381
+  - 4ed32329e0ed
+  - b88ebb3672a1
+  - 2da482e408b8
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_heatmap
   owner: bgruening
   revisions:
-  - ba6efa77fb79
-  - 512155688d98
   - a4dfb122e52b
-  - c60570fa602f
   - e4c7985d4585
   - 010e58e9d822
   - a7849312d328
   - 25d830337d31
+  - ba6efa77fb79
+  - 512155688d98
+  - c60570fa602f
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_pca
   owner: bgruening
   revisions:
   - 69264da0ce77
-  - 00d869ea03a1
+  - 4d678170d29b
   - aa200e4f3939
-  - 443d9a9d6d11
+  - 00d869ea03a1
   - c899e0ccff8c
-  - 4d678170d29b
   - 38e3f226248b
+  - 443d9a9d6d11
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deeptools_plot_profile
   owner: bgruening
   revisions:
-  - aac8444d6681
   - d806504e96d9
+  - c361b12d207a
   - a2d70c4fd406
-  - 10301d137111
   - 6662b1a8d326
-  - c361b12d207a
+  - aac8444d6681
+  - 10301d137111
   tool_panel_section_label: DeepTools
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/dna_metabarcoding.yml b/usegalaxy.org.au/dna_metabarcoding.yml
index d11d5e1a0..9644d5087 100644
--- a/usegalaxy.org.au/dna_metabarcoding.yml
+++ b/usegalaxy.org.au/dna_metabarcoding.yml
@@ -16,8 +16,8 @@ tools:
 - name: obi_convert
   owner: iuc
   revisions:
-  - 4d705e3443a7
   - 374fd9feb032
+  - 4d705e3443a7
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_grep
@@ -44,15 +44,15 @@ tools:
 - name: obi_sort
   owner: iuc
   revisions:
-  - e614dcabd870
   - 12b9e285ca1c
+  - e614dcabd870
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_stat
   owner: iuc
   revisions:
-  - 39320fee9d70
   - 723a93febe89
+  - 39320fee9d70
   tool_panel_section_label: DNA Metabarcoding
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: obi_tab
diff --git a/usegalaxy.org.au/emboss.yml b/usegalaxy.org.au/emboss.yml
index 58b655034..f664232e7 100644
--- a/usegalaxy.org.au/emboss.yml
+++ b/usegalaxy.org.au/emboss.yml
@@ -2,9 +2,9 @@ tools:
 - name: emboss_5
   owner: devteam
   revisions:
+  - 832c20329690
   - 63dd26468588
   - dba489bfcd62
   - ce385837c160
-  - 832c20329690
   tool_panel_section_label: EMBOSS
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/epigenetics.yml b/usegalaxy.org.au/epigenetics.yml
index 85a3f9836..685df40a5 100644
--- a/usegalaxy.org.au/epigenetics.yml
+++ b/usegalaxy.org.au/epigenetics.yml
@@ -2,10 +2,10 @@ tools:
 - name: bwameth
   owner: iuc
   revisions:
-  - d82648ad25a3
   - 62f5fab76dfb
-  - 29bdbc353f20
   - 6da3972210ee
+  - 29bdbc353f20
+  - d82648ad25a3
   tool_panel_section_label: Epigenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metilene
diff --git a/usegalaxy.org.au/fastafastq.yml b/usegalaxy.org.au/fastafastq.yml
index 4beed0354..3845d094a 100644
--- a/usegalaxy.org.au/fastafastq.yml
+++ b/usegalaxy.org.au/fastafastq.yml
@@ -8,20 +8,20 @@ tools:
 - name: cutadapt
   owner: lparsons
   revisions:
-  - 48f587c13075
+  - 660cffd8d92a
+  - 5915ea1ec9b1
+  - 49370cb85f0f
   - de6cebe3c043
+  - 44e2cc14f75b
   - c4b82dce8335
-  - e4691e1589d3
-  - 660cffd8d92a
-  - 8665bcc8b847
+  - 48f587c13075
   - c5e2e5902201
-  - 5915ea1ec9b1
-  - 4e5056fefd88
+  - 135b80fb1ac2
+  - e4691e1589d3
   - 288f97432497
-  - 44e2cc14f75b
+  - 4e5056fefd88
+  - 8665bcc8b847
   - c053d4cad713
-  - 49370cb85f0f
-  - 135b80fb1ac2
   - 093678460093
   - 8c0175e03cee
   tool_panel_section_label: FASTA/FASTQ
@@ -29,16 +29,16 @@ tools:
 - name: fasta_clipping_histogram
   owner: devteam
   revisions:
+  - f666895cbebd
   - 9db07fd39f85
   - 8889eb864cef
-  - f666895cbebd
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_compute_length
   owner: devteam
   revisions:
-  - de2db1bdfbf8
   - 7d37cfda8e00
+  - de2db1bdfbf8
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_concatenate_by_species
@@ -57,8 +57,8 @@ tools:
   owner: devteam
   revisions:
   - 859422bcb689
-  - 516b97a23d7e
   - 9457a20156db
+  - 516b97a23d7e
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_merge_files_and_filter_unique_sequences
@@ -72,32 +72,32 @@ tools:
   owner: devteam
   revisions:
   - f81d4362b6c1
-  - ec0b5076173a
   - f773e98b26cf
+  - ec0b5076173a
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasta_stats
   owner: iuc
   revisions:
-  - 0dbb995c7d35
-  - 9c620a950d3a
   - 56022eb50bbd
+  - 9c620a950d3a
+  - 0dbb995c7d35
   - cd0874854f51
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastp
   owner: iuc
   revisions:
-  - 65b93b623c77
   - 1d8fe9bc4cb0
   - dbf9c561ef29
+  - 65b93b623c77
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_combiner
   owner: devteam
   revisions:
-  - f1dc2a761c30
   - b05e39b9c170
+  - f1dc2a761c30
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_filter
@@ -110,29 +110,29 @@ tools:
 - name: fastq_groomer
   owner: devteam
   revisions:
-  - 47e5dbc3e790
   - 8611b80a14d6
+  - 47e5dbc3e790
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_manipulation
   owner: devteam
   revisions:
-  - 7861f3b10c68
   - 5b87038565bb
+  - 7861f3b10c68
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_masker_by_quality
   owner: devteam
   revisions:
-  - 9282652e7234
   - 9dfda4e310ed
+  - 9282652e7234
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_deinterlacer
   owner: devteam
   revisions:
-  - 03d57fea6482
   - f3936d0632cb
+  - 03d57fea6482
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_interlacer
@@ -145,8 +145,8 @@ tools:
 - name: fastq_paired_end_joiner
   owner: devteam
   revisions:
-  - c885369b207b
   - 09a2199cd356
+  - c885369b207b
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_paired_end_splitter
@@ -160,23 +160,23 @@ tools:
 - name: fastq_quality_converter
   owner: devteam
   revisions:
-  - 74db4cffab1f
-  - 54053ea6c77e
   - 045f0e1043f7
+  - 54053ea6c77e
+  - 74db4cffab1f
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_stats
   owner: devteam
   revisions:
-  - b1cea1b2fcd0
   - f0e7deab6518
+  - b1cea1b2fcd0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer
   owner: devteam
   revisions:
-  - 33794bdb7fe0
   - b63b2bfb3ea3
+  - 33794bdb7fe0
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqtofasta
@@ -188,27 +188,27 @@ tools:
 - name: fastx_artifacts_filter
   owner: devteam
   revisions:
+  - 567d5b3c52b1
+  - 529bccd5e4a1
   - d5e9e83cd3d8
   - 09070cacefd8
-  - 529bccd5e4a1
-  - 567d5b3c52b1
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_barcode_splitter
   owner: devteam
   revisions:
   - 4bedca26c133
-  - 8abdedf55101
   - 0b7ec11b3c7c
+  - 8abdedf55101
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_clipper
   owner: devteam
   revisions:
   - 736b8f6ee456
-  - 90858c306551
   - bdf1ce174e39
   - cb1e251cac37
+  - 90858c306551
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_collapser
@@ -222,28 +222,28 @@ tools:
 - name: fastx_renamer
   owner: devteam
   revisions:
+  - 3599f5451ee2
+  - 02f8a17a4ebd
   - f984bb114520
   - b29d37ca9e41
-  - 02f8a17a4ebd
-  - 3599f5451ee2
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_reverse_complement
   owner: devteam
   revisions:
+  - 177f0621c266
   - 6027ef51ef91
   - e246088b6e34
-  - 177f0621c266
   - 0c2907307ba4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_trimmer
   owner: devteam
   revisions:
-  - 73194cdd4f57
   - 377ac2829eac
-  - 61b4cedc8934
   - 547e8d00f11c
+  - 61b4cedc8934
+  - 73194cdd4f57
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiadapterfilt
@@ -262,8 +262,8 @@ tools:
 - name: seq_select_by_id
   owner: peterjc
   revisions:
-  - 3b0a14722175
   - 8e1a90917fa7
+  - 3b0a14722175
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seqtk
@@ -276,8 +276,8 @@ tools:
 - name: trimmomatic
   owner: pjbriggs
   revisions:
-  - dfa082f84068
   - 51b771646466
+  - dfa082f84068
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ucsc_fasplit
@@ -290,11 +290,11 @@ tools:
 - name: umi_tools_count
   owner: iuc
   revisions:
-  - 8250ea3a1501
-  - b557acca0b56
+  - 24013bf85a6f
   - a535cf1e5da4
+  - 8250ea3a1501
   - e654095ab143
-  - 24013bf85a6f
+  - b557acca0b56
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: umi_tools_dedup
@@ -306,11 +306,11 @@ tools:
 - name: umi_tools_extract
   owner: iuc
   revisions:
-  - 828dba98cdb4
-  - f3759eec3018
+  - 9fa7803d1c51
   - 27ac32a22ad2
+  - f3759eec3018
   - 7accf7407811
-  - 9fa7803d1c51
   - 6a675c3aa610
+  - 828dba98cdb4
   tool_panel_section_label: FASTA/FASTQ
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/fastq_quality_control.yml b/usegalaxy.org.au/fastq_quality_control.yml
index b014e8ba0..43788bc56 100644
--- a/usegalaxy.org.au/fastq_quality_control.yml
+++ b/usegalaxy.org.au/fastq_quality_control.yml
@@ -2,10 +2,10 @@ tools:
 - name: fastq_quality_filter
   owner: devteam
   revisions:
+  - 64e9a6afdd0c
   - 7b4468117008
   - e41385662e5e
   - ce9cd02d5b88
-  - 64e9a6afdd0c
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastq_trimmer_by_quality
@@ -19,12 +19,12 @@ tools:
   owner: devteam
   revisions:
   - f2e8552cf1d0
-  - ff9530579d1f
-  - e7b2202befea
+  - 3d0c7bdf12f5
+  - 2b0c9d9fc6ca
   - 5ec9f6bceaee
+  - e7b2202befea
   - 9da02be9c6cc
-  - 2b0c9d9fc6ca
-  - 3d0c7bdf12f5
+  - ff9530579d1f
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastqe
@@ -38,45 +38,45 @@ tools:
   owner: devteam
   revisions:
   - b6b54ba71bd8
-  - ad116ae3f4d9
   - 18a51655db17
+  - ad116ae3f4d9
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fastx_quality_statistics
   owner: devteam
   revisions:
+  - cc0fd298cc17
   - 7306ec78632a
   - 59003d0543cd
-  - cc0fd298cc17
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filtlong
   owner: iuc
   revisions:
-  - a72af9de6bf5
   - 1f296803dfa3
+  - a72af9de6bf5
   - 8880fb74ef56
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: multiqc
   owner: iuc
   revisions:
-  - 3d93dd18d9f8
-  - bf675f34b056
   - 5e33b465d8d5
-  - c1a4b5f3b432
-  - 1c2db0054039
-  - abfd8a6544d7
   - 9a913cdee30e
   - b2f1f75d49c4
+  - 1c2db0054039
+  - 3d93dd18d9f8
+  - c1a4b5f3b432
+  - abfd8a6544d7
   - 75c93c70d094
+  - bf675f34b056
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trim_galore
   owner: bgruening
   revisions:
-  - cd7e644cae1d
   - 084bbd8ba7b8
+  - cd7e644cae1d
   - 949f01671246
   tool_panel_section_label: FASTQ Quality Control
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/filter_and_sort.yml b/usegalaxy.org.au/filter_and_sort.yml
index 85c239a05..0060ed139 100644
--- a/usegalaxy.org.au/filter_and_sort.yml
+++ b/usegalaxy.org.au/filter_and_sort.yml
@@ -2,8 +2,8 @@ tools:
 - name: filter_by_fasta_ids
   owner: galaxyp
   revisions:
-  - 3c623e81be77
   - dff7df6fcab5
+  - 3c623e81be77
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sample_seqs
@@ -15,8 +15,8 @@ tools:
 - name: seq_filter_by_id
   owner: peterjc
   revisions:
+  - 141612f8c3e3
   - 83a19df00eab
   - 85ef5f5a0562
-  - 141612f8c3e3
   tool_panel_section_label: Filter and Sort
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/gemini_tools.yml b/usegalaxy.org.au/gemini_tools.yml
index e86d2178c..86b92f1f9 100644
--- a/usegalaxy.org.au/gemini_tools.yml
+++ b/usegalaxy.org.au/gemini_tools.yml
@@ -2,8 +2,8 @@ tools:
 - name: gemini_actionable_mutations
   owner: iuc
   revisions:
-  - 3630a6e624d4
   - 142d95ab942e
+  - 3630a6e624d4
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_amend
@@ -16,23 +16,23 @@ tools:
 - name: gemini_annotate
   owner: iuc
   revisions:
-  - 8f53b238a360
-  - 0c8f7322f8fc
   - f2f3bc622a16
+  - 0c8f7322f8fc
+  - 8f53b238a360
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_burden
   owner: iuc
   revisions:
-  - df57188562f0
   - 1a4c5adcd587
+  - df57188562f0
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_comp_hets
   owner: iuc
   revisions:
-  - 7cf9bc210044
   - 62647e2637f6
+  - 7cf9bc210044
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_db_info
@@ -45,15 +45,15 @@ tools:
 - name: gemini_de_novo
   owner: iuc
   revisions:
-  - d5b01cc263be
   - 9db3e299b1c8
+  - d5b01cc263be
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_dump
   owner: iuc
   revisions:
-  - 40f85b45e472
   - 96a2d270bf0f
+  - 40f85b45e472
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_fusions
@@ -79,15 +79,15 @@ tools:
 - name: gemini_interactions
   owner: iuc
   revisions:
-  - 184aa4e686e2
   - 2550239feed5
+  - 184aa4e686e2
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_load
   owner: iuc
   revisions:
-  - cf61daf064fe
   - b2c25142267e
+  - cf61daf064fe
   - 45296e47d565
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -115,37 +115,37 @@ tools:
 - name: gemini_qc
   owner: iuc
   revisions:
-  - 86e46972e183
   - 9e83673fa6d2
+  - 86e46972e183
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_query
   owner: iuc
   revisions:
+  - da74170c55c7
   - 840fb4850be3
   - 666f60a9331a
-  - da74170c55c7
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_recessive_and_dominant
   owner: iuc
   revisions:
-  - 05124dc72dba
   - 86f3aac4418d
+  - 05124dc72dba
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_region
   owner: iuc
   revisions:
-  - 601b70d10d92
   - 33efe43c1dbb
+  - 601b70d10d92
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_roh
   owner: iuc
   revisions:
-  - 345d41f3f574
   - 93967598e18e
+  - 345d41f3f574
   tool_panel_section_label: Gemini Tools
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gemini_set_somatic
diff --git a/usegalaxy.org.au/genome_editing.yml b/usegalaxy.org.au/genome_editing.yml
index ba4164156..3fed957fb 100644
--- a/usegalaxy.org.au/genome_editing.yml
+++ b/usegalaxy.org.au/genome_editing.yml
@@ -9,8 +9,8 @@ tools:
 - name: mageck_gsea
   owner: iuc
   revisions:
-  - d46e36492bff
   - b946929d31c4
+  - d46e36492bff
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mageck_mle
@@ -30,7 +30,7 @@ tools:
 - name: mageck_test
   owner: iuc
   revisions:
-  - 9b4f4533c9ee
   - 688a8eccea71
+  - 9b4f4533c9ee
   tool_panel_section_label: Genome Editing
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/get_data.yml b/usegalaxy.org.au/get_data.yml
index 76e7bd594..afddf5f13 100644
--- a/usegalaxy.org.au/get_data.yml
+++ b/usegalaxy.org.au/get_data.yml
@@ -2,9 +2,9 @@ tools:
 - name: dbbuilder
   owner: galaxyp
   revisions:
+  - 983bf725dfc2
   - b39347891609
   - c1b437242fee
-  - 983bf725dfc2
   - e9df53a75f3c
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -19,39 +19,39 @@ tools:
 - name: sra_tools
   owner: iuc
   revisions:
-  - 69ebb7f46e45
-  - c441583adae5
-  - 9a776b080193
-  - 6591f049cf7e
-  - 83c7d564b128
   - aad3885b3216
-  - 6ea73833cf67
   - 5e6237d58b0c
-  - 4df8de2d0e48
+  - 83c7d564b128
   - 4317d3cb6cba
-  - 734abc7ac21d
-  - 653e89d73fc4
   - f5ea3ce9b9b0
+  - e407b9da183a
+  - 6591f049cf7e
+  - 69ebb7f46e45
+  - 734abc7ac21d
+  - 9a776b080193
+  - 7068f48d0ef9
+  - c441583adae5
   - 1790dcf3c32d
+  - 6ea73833cf67
   - e08a7ad4378b
-  - 7068f48d0ef9
-  - e407b9da183a
+  - 4df8de2d0e48
+  - 653e89d73fc4
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: unipept
   owner: galaxyp
   revisions:
-  - 34758ab8aaa4
+  - 7863f1abcdda
   - 75b3b3d0adbf
   - 9aaa46d45472
-  - 7863f1abcdda
+  - 34758ab8aaa4
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: uniprot_rest_interface
   owner: bgruening
   revisions:
-  - bfdc6a7ffd3a
   - af5eccf83605
+  - bfdc6a7ffd3a
   - 054483e27a35
   tool_panel_section_label: Get Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/graphdisplay_data.yml b/usegalaxy.org.au/graphdisplay_data.yml
index 689ce6b85..0d9d110bc 100644
--- a/usegalaxy.org.au/graphdisplay_data.yml
+++ b/usegalaxy.org.au/graphdisplay_data.yml
@@ -2,15 +2,15 @@ tools:
 - name: circos
   owner: iuc
   revisions:
-  - 7f13dc906cb9
   - 740057a5126d
-  - c4bde687c846
-  - 290a11559985
-  - a64dc31ab7f2
-  - 4b519282a05b
+  - 7f13dc906cb9
   - fd59d783248a
+  - c4bde687c846
   - df7356989ac1
   - ae9994cf526f
+  - a64dc31ab7f2
+  - 4b519282a05b
+  - 290a11559985
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: draw_stacked_barplots
@@ -28,8 +28,8 @@ tools:
 - name: fastq_quality_boxplot
   owner: devteam
   revisions:
-  - 7cf5b1d072b5
   - f95284aa2946
+  - 7cf5b1d072b5
   - 867ab348287d
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -42,31 +42,31 @@ tools:
 - name: ggplot2_heatmap2
   owner: iuc
   revisions:
+  - 3b37b1b1c3a7
   - 53460afd5115
   - ca7cb0eaad62
   - '566197475670'
-  - 3b37b1b1c3a7
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_heatmap
   owner: iuc
   revisions:
-  - 391a4cc45fea
-  - d3a9e32672ec
   - 3d059e9c2fba
+  - d3a9e32672ec
   - 10515715c940
   - da4c086cff5b
+  - 391a4cc45fea
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ggplot2_point
   owner: iuc
   revisions:
-  - e3a675da7fd0
-  - 3b12bf9b4b87
   - d0fc8b746d57
-  - 299307abd804
-  - 1acf88921176
   - 5fe1dc76176e
+  - 1acf88921176
+  - 3b12bf9b4b87
+  - e3a675da7fd0
+  - 299307abd804
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gmaj
@@ -78,15 +78,15 @@ tools:
 - name: graphlan_annotate
   owner: iuc
   revisions:
-  - cf1df6b2220a
   - 5d6f8f0bef7c
+  - cf1df6b2220a
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: graphlan
   owner: iuc
   revisions:
-  - a490b70e46fc
   - 8f62f666dcb6
+  - a490b70e46fc
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: histogram
@@ -98,17 +98,17 @@ tools:
 - name: jbrowse
   owner: iuc
   revisions:
-  - a6e57ff585c0
-  - 667e17248bfe
-  - 2bb2e07a7a21
-  - ca2def38369c
-  - 1cfc579079a6
   - 4542035c1075
-  - 6cd09d7b5f37
-  - fd5dbf0f732e
   - 112eb40ba6cf
+  - 6cd09d7b5f37
+  - ca2def38369c
   - 836d1aa3e89a
   - 17359b808b01
+  - 2bb2e07a7a21
+  - fd5dbf0f732e
+  - 1cfc579079a6
+  - a6e57ff585c0
+  - 667e17248bfe
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: krona_text
@@ -126,9 +126,9 @@ tools:
 - name: pathview
   owner: iuc
   revisions:
-  - fe154a7af404
   - 03c13085aecc
   - f1691de443a7
+  - fe154a7af404
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pe_histogram
@@ -140,8 +140,8 @@ tools:
 - name: plotly_ml_performance_plots
   owner: bgruening
   revisions:
-  - 62e3a4e8c54c
   - 85da91bbdbfb
+  - 62e3a4e8c54c
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: plotly_parallel_coordinates_plot
@@ -160,9 +160,9 @@ tools:
 - name: pretext_snapshot
   owner: iuc
   revisions:
-  - 0a10fddd97d2
-  - 7c9417381ad5
   - 44c66e8d21e6
+  - 7c9417381ad5
+  - 0a10fddd97d2
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: prop_venn
@@ -174,22 +174,22 @@ tools:
 - name: pygenometracks
   owner: iuc
   revisions:
-  - 14e7c35f3d00
-  - 7dd841a32245
-  - 59fd173ac850
+  - 326a3db8d9d1
   - 4ac4e7083b7e
-  - 2824d77cd8f8
+  - 14e7c35f3d00
   - 360df4999907
+  - 2824d77cd8f8
+  - 7dd841a32245
   - a1abfa420d9d
-  - 326a3db8d9d1
+  - 59fd173ac850
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: volcanoplot
   owner: iuc
   revisions:
-  - 44608d0193ed
   - 73b8cb5bddcd
   - 83c573f2e73c
+  - 44608d0193ed
   tool_panel_section_label: Graph/Display Data
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: weblogo3
diff --git a/usegalaxy.org.au/hca_single_cell.yml b/usegalaxy.org.au/hca_single_cell.yml
index a0fc89ef5..565534d9b 100644
--- a/usegalaxy.org.au/hca_single_cell.yml
+++ b/usegalaxy.org.au/hca_single_cell.yml
@@ -8,8 +8,8 @@ tools:
 - name: gtf2gene_list
   owner: ebi-gxa
   revisions:
-  - 1a642de6db01
   - 14b3f2a4523b
+  - 1a642de6db01
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: retrieve_scxa
@@ -82,8 +82,8 @@ tools:
 - name: scanpy_integrate_mnn
   owner: ebi-gxa
   revisions:
-  - 94697510d55f
   - 9a2f72d7dbd2
+  - 94697510d55f
   tool_panel_section_label: HCA Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_multiplet_scrublet
diff --git a/usegalaxy.org.au/hicexplorer.yml b/usegalaxy.org.au/hicexplorer.yml
index 83120f572..bec4853c6 100644
--- a/usegalaxy.org.au/hicexplorer.yml
+++ b/usegalaxy.org.au/hicexplorer.yml
@@ -2,45 +2,45 @@ tools:
 - name: hicexplorer_hicbuildmatrix
   owner: bgruening
   revisions:
-  - 29f66c353bcb
-  - ed2cca6b5de4
   - 921a2da49a0c
+  - 29f66c353bcb
   - 9edf8894a22d
+  - ed2cca6b5de4
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicfindtads
   owner: bgruening
   revisions:
-  - 78fb5e286609
   - d404277cc87a
-  - ec4b948dc6f0
   - 5746d61f0a91
+  - ec4b948dc6f0
+  - 78fb5e286609
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicmergematrixbins
   owner: bgruening
   revisions:
-  - 977dc15add20
   - 9e357a8b2ec3
-  - 03dd3c16ae4e
   - 4d511437b1e5
+  - 03dd3c16ae4e
+  - 977dc15add20
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicpca
   owner: bgruening
   revisions:
-  - 77919cc3618e
   - 0ba4f56a3613
   - 41dbf4d162a2
   - 3b5b54ed6392
+  - 77919cc3618e
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hicexplorer_hicplotmatrix
   owner: bgruening
   revisions:
+  - b63363075c2e
+  - 7babd8a46fe0
   - 5308ca68ef3d
   - 9939786dd9c9
-  - 7babd8a46fe0
-  - b63363075c2e
   tool_panel_section_label: HiCExplorer
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/imaging.yml b/usegalaxy.org.au/imaging.yml
index 23966173c..50e3a41b9 100644
--- a/usegalaxy.org.au/imaging.yml
+++ b/usegalaxy.org.au/imaging.yml
@@ -2,9 +2,9 @@ tools:
 - name: 2d_auto_threshold
   owner: imgteam
   revisions:
-  - 81f0cbca04a7
-  - 3df9f0a4bf34
   - 0c777d708acc
+  - 3df9f0a4bf34
+  - 81f0cbca04a7
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: 2d_feature_extraction
@@ -38,48 +38,48 @@ tools:
 - name: bfconvert
   owner: imgteam
   revisions:
-  - 85edbb7a436b
   - 10eed33aa9b2
-  - b07f4839ca77
+  - 85edbb7a436b
   - f3360fbeda64
+  - b07f4839ca77
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: binary2labelimage
   owner: imgteam
   revisions:
-  - 6e65fd971e13
   - 984358e43242
+  - 6e65fd971e13
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: count_objects
   owner: imgteam
   revisions:
-  - 664232d2a3f7
   - b58447a2eed2
+  - 664232d2a3f7
   - 5bf8eb50b280
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_cellprofiler
   owner: bgruening
   revisions:
-  - 0e4dccaafef5
   - eb6c08714244
+  - 0e4dccaafef5
   - e917a2424690
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_color_to_gray
   owner: bgruening
   revisions:
-  - e8f822eeb9fd
   - bad171ed1e96
+  - e8f822eeb9fd
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_common
   owner: bgruening
   revisions:
+  - 670975e92458
   - e7273daa5ae2
   - 6070780813d9
-  - 670975e92458
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_convert_objects_to_image
@@ -94,55 +94,55 @@ tools:
   owner: bgruening
   revisions:
   - 6a7da2e5f696
-  - 5d28ac336861
   - 2484086dee41
+  - 5d28ac336861
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_enhance_or_suppress_features
   owner: bgruening
   revisions:
   - f2ed92b011a9
-  - bace5a93a97c
   - 11f177b1a59e
+  - bace5a93a97c
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_export_to_spreadsheet
   owner: bgruening
   revisions:
-  - f8fa0f6718a3
-  - d0178bdcd00e
   - f24c370e5ea4
+  - d0178bdcd00e
+  - f8fa0f6718a3
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_gray_to_color
   owner: bgruening
   revisions:
-  - 3245681b2f6d
   - 31d195bedf6d
+  - 3245681b2f6d
   - ad271f78a87a
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_identify_primary_objects
   owner: bgruening
   revisions:
-  - b6eec6087271
-  - 87d4d92d7487
   - 993faa34333b
+  - 87d4d92d7487
+  - b6eec6087271
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_image_math
   owner: bgruening
   revisions:
   - ff1a86a87364
-  - 6100a22bf4f2
   - c09dcda1143f
+  - 6100a22bf4f2
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_mask_image
   owner: bgruening
   revisions:
-  - 667a513e67e4
   - 3a05117669cf
+  - 667a513e67e4
   - b178453ea8d1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -157,17 +157,17 @@ tools:
 - name: cp_measure_image_area_occupied
   owner: bgruening
   revisions:
+  - 91e03287f285
   - a32c3f810ade
   - 20dbb1f7ec7b
-  - 91e03287f285
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_intensity
   owner: bgruening
   revisions:
-  - 5499dc6f8ac1
-  - 8536b1ae0254
   - b64af54c5c09
+  - 8536b1ae0254
+  - 5499dc6f8ac1
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_image_quality
@@ -181,25 +181,25 @@ tools:
 - name: cp_measure_object_intensity
   owner: bgruening
   revisions:
+  - 980aed9e8fd5
   - e52c75a28c4b
   - 407925835dd9
-  - 980aed9e8fd5
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_object_size_shape
   owner: bgruening
   revisions:
-  - acf3aa487283
-  - d85f11570109
   - 79e10d12d90a
+  - d85f11570109
+  - acf3aa487283
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_measure_texture
   owner: bgruening
   revisions:
   - b76841ee5560
-  - 80b200ae516b
   - 035a58c7f54a
+  - 80b200ae516b
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_overlay_outlines
@@ -212,17 +212,17 @@ tools:
 - name: cp_relate_objects
   owner: bgruening
   revisions:
+  - 48102a685037
   - 3a3033222f61
   - 8083a87d2fdf
-  - 48102a685037
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_save_images
   owner: bgruening
   revisions:
-  - 4ecf93628f97
-  - 33f4fa1413fb
   - 27edbb90ab2b
+  - 33f4fa1413fb
+  - 4ecf93628f97
   tool_panel_section_label: Imaging
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cp_tile
diff --git a/usegalaxy.org.au/ivar.yml b/usegalaxy.org.au/ivar.yml
index ba9d44b86..4e1c70df9 100644
--- a/usegalaxy.org.au/ivar.yml
+++ b/usegalaxy.org.au/ivar.yml
@@ -2,88 +2,88 @@ tools:
 - name: ivar_consensus
   owner: iuc
   revisions:
-  - 78bbd17d0703
-  - 3e4f434a69c6
   - f362150bef41
-  - e319b5b65879
-  - e4ee04da1c19
+  - 78bbd17d0703
   - a38934e303b9
-  - 1069f6db0a0e
-  - d6e72da3ec35
+  - e319b5b65879
   - 17f911830a8c
+  - d6e72da3ec35
+  - 3e4f434a69c6
+  - 1069f6db0a0e
+  - e4ee04da1c19
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_filtervariants
   owner: iuc
   revisions:
-  - 1ef5b6e3e09d
-  - f91cfb73d369
-  - 72ddd32392cd
   - 0135f1d487a0
-  - c88553ec696e
-  - 9537184d421f
+  - 72ddd32392cd
   - 7fe36019c073
   - 2b95d5c04908
+  - f91cfb73d369
+  - 1ef5b6e3e09d
   - 8f8df367470d
+  - c88553ec696e
+  - 9537184d421f
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_getmasked
   owner: iuc
   revisions:
   - d7e79eb3bcb3
-  - fafb3d685fa9
   - ad0dc9f4c9e2
   - 2cf4a1cafc16
+  - fafb3d685fa9
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_removereads
   owner: iuc
   revisions:
-  - 43aac8d29685
   - 8c05afb547fa
   - 6a1515bb0687
-  - 94df24c6bc00
+  - 43aac8d29685
   - ee29337f905c
-  - 69797fa273c3
+  - 9eaadf03e0df
   - 28a6f1908fcc
   - bd2a7d1316b9
+  - 69797fa273c3
   - 7f1cfa4c0e32
-  - 9eaadf03e0df
-  - 8d36959b000d
-  - 3d18f8c3c0f6
   - ee2beb764a7b
+  - 3d18f8c3c0f6
+  - 94df24c6bc00
+  - 8d36959b000d
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_trim
   owner: iuc
   revisions:
-  - d37ede8589b2
+  - 5671e1d3d5ee
   - 364f4ffec275
-  - c092052ed673
-  - db536ad45f28
   - 5d6ed46cc101
   - 8858fa037a15
-  - 0893a1dbb807
+  - db536ad45f28
   - cb903c9dc33d
-  - e3bb03cf207a
+  - d37ede8589b2
+  - 0893a1dbb807
   - 9f978da6528a
-  - 5671e1d3d5ee
   - bcaa0d571ce2
+  - e3bb03cf207a
+  - c092052ed673
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ivar_variants
   owner: iuc
   revisions:
-  - 584beffa972b
-  - f95f403841ad
-  - 38b91a3190cd
   - 3b6a16d82c1b
+  - 584beffa972b
   - c5c9f02b6167
-  - 045d6d00f606
   - 230b05597996
   - e1a015876aa9
   - ed28dd32141c
   - 12d66d0d05ac
   - 49236b03e4fd
+  - f95f403841ad
+  - 38b91a3190cd
+  - 045d6d00f606
   tool_panel_section_label: iVar
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/join_subtract_and_group.yml b/usegalaxy.org.au/join_subtract_and_group.yml
index d34b9f7d1..ba2b1ec00 100644
--- a/usegalaxy.org.au/join_subtract_and_group.yml
+++ b/usegalaxy.org.au/join_subtract_and_group.yml
@@ -3,18 +3,18 @@ tools:
   owner: iuc
   revisions:
   - b8a457820315
+  - f198773344e4
   - 17e3b698dd52
   - 0f1724dd59d2
-  - f198773344e4
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: datamash_transpose
   owner: iuc
   revisions:
+  - a513e3fbb4c5
   - ba0c40780ecf
+  - 22c2a1ac7ae3
   - 374cb875d38a
   - ac092723240d
-  - a513e3fbb4c5
-  - 22c2a1ac7ae3
   tool_panel_section_label: Join, Subtract and Group
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/machine_learning.yml b/usegalaxy.org.au/machine_learning.yml
index 695f57054..283176693 100644
--- a/usegalaxy.org.au/machine_learning.yml
+++ b/usegalaxy.org.au/machine_learning.yml
@@ -10,38 +10,38 @@ tools:
 - name: keras_model_config
   owner: bgruening
   revisions:
-  - 8a794e6d3388
   - 4d81e3e2fb63
   - f22a9297440f
+  - 8a794e6d3388
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: keras_train_and_eval
   owner: bgruening
   revisions:
+  - 2af1346e68c9
   - e1317b5502fa
+  - b6ef6d0cb6b7
   - f1b9a42d6809
   - 818f9b69d8a0
-  - 2af1346e68c9
-  - b6ef6d0cb6b7
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: ml_visualization_ex
   owner: bgruening
   revisions:
-  - 1588f9076e32
+  - 8334dc98c48e
+  - 947c2eacccb8
   - 05143043ca13
+  - 1588f9076e32
   - c80db5d6fd8c
-  - 947c2eacccb8
-  - 8334dc98c48e
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: model_prediction
   owner: bgruening
   revisions:
-  - 25b46af53232
   - 83228baae3c5
-  - 9991c4ddde14
+  - 25b46af53232
   - 1552b8cb4a94
+  - 9991c4ddde14
   - 29e4122c90de
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -49,31 +49,31 @@ tools:
   owner: bgruening
   revisions:
   - 1a53edc4b438
+  - 841a6cc5fc58
+  - 060ca94ac049
+  - 53616c8b0865
   - a07ab242b0b5
   - f3dfa4bdf87e
-  - 53616c8b0865
-  - 060ca94ac049
-  - 841a6cc5fc58
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_generalized_linear
   owner: bgruening
   revisions:
-  - dc4b5fd604a6
-  - d4808d5b83da
   - 40f4447733b2
+  - 2fc89dcd41c8
+  - d4808d5b83da
   - 91c4e3331208
   - 927586a18553
-  - 2fc89dcd41c8
+  - dc4b5fd604a6
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_searchcv
   owner: bgruening
   revisions:
-  - 36e8d6d5d01b
-  - 7626ea9c2e1b
   - 25ab6b4e376e
+  - 7626ea9c2e1b
   - c6ae57f774c6
+  - 36e8d6d5d01b
   - e5a5ad882f1f
   - 301e07345c93
   tool_panel_section_label: Machine Learning
@@ -81,20 +81,20 @@ tools:
 - name: sklearn_svm_classifier
   owner: bgruening
   revisions:
+  - 02d2be90dedb
+  - b7c3e9a3b954
+  - 4ed102b922cb
   - 0630258dcf35
   - 80852884053f
   - f9639b488779
-  - b7c3e9a3b954
-  - 4ed102b922cb
-  - 02d2be90dedb
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_to_categorical
   owner: bgruening
   revisions:
   - caeb57858702
-  - 61634a87efc7
   - 14180f9c831e
+  - 61634a87efc7
   - ec69cbe34b73
   tool_panel_section_label: Machine Learning
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/mapping.yml b/usegalaxy.org.au/mapping.yml
index 81e4b7b39..fc145d2c7 100644
--- a/usegalaxy.org.au/mapping.yml
+++ b/usegalaxy.org.au/mapping.yml
@@ -2,15 +2,15 @@ tools:
 - name: bowtie2
   owner: devteam
   revisions:
-  - 03e9b2fbc005
   - 017aba02828d
-  - 17062a0decb7
-  - 3ba8d4563129
+  - f6877ad76b00
+  - 03e9b2fbc005
   - 749c918495f7
-  - cd659e8cc5fa
-  - 937aa69e715f
   - a6d65b0c67af
-  - f6877ad76b00
+  - 937aa69e715f
+  - 17062a0decb7
+  - cd659e8cc5fa
+  - 3ba8d4563129
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bowtie_wrappers
@@ -22,18 +22,18 @@ tools:
 - name: bwa_mem2
   owner: iuc
   revisions:
-  - bfaa0d22c2e4
   - b4a22d90cce9
+  - bfaa0d22c2e4
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bwa
   owner: devteam
   revisions:
+  - 53646aaaafef
   - e188dc7a68e6
   - dfd8b7f78c37
-  - 53646aaaafef
-  - 64f11cf59c6e
   - 3fe632431b68
+  - 64f11cf59c6e
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lastz_paired_reads
@@ -45,43 +45,43 @@ tools:
 - name: lastz
   owner: devteam
   revisions:
-  - 60afcc2c1d05
   - 3e1ea2facca6
+  - 60afcc2c1d05
+  - 2ff111fac1d7
   - e7f19d6a9af8
   - 37b497aa133f
-  - 2ff111fac1d7
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: minimap2
   owner: iuc
   revisions:
-  - 8c6cd2650d1f
-  - 09b53c1d4ab1
-  - 77b2770508f6
   - 11a0d50a54e6
-  - c0c2d0941de8
-  - 037c6e54df11
-  - b3eab4b67562
+  - 77b2770508f6
   - 3f4d6399997b
   - f54f5baedfdd
-  - 6b1e195506a3
-  - be1d967337e4
+  - 8c6cd2650d1f
+  - 09b53c1d4ab1
+  - b3eab4b67562
   - 53c0b7a1a0c3
+  - be1d967337e4
+  - c0c2d0941de8
+  - 6b1e195506a3
+  - 037c6e54df11
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: rna_starsolo
   owner: iuc
   revisions:
-  - 00fbfac99d39
-  - 13022c3d3076
-  - 79b885ce78d7
   - 1cd2511a396e
+  - 00fbfac99d39
   - 178bdbdb6d24
-  - e403d27e8f24
-  - b8f5f6e87f5c
   - 9ee34ba73ebf
-  - ec9cbd6b9a49
+  - 79b885ce78d7
+  - 13022c3d3076
+  - b8f5f6e87f5c
   - 5ef7ec16b04f
+  - ec9cbd6b9a49
+  - e403d27e8f24
   tool_panel_section_label: Mapping
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: star_fusion
diff --git a/usegalaxy.org.au/metagenomic_analysis.yml b/usegalaxy.org.au/metagenomic_analysis.yml
index 1bfef999a..70b05c088 100644
--- a/usegalaxy.org.au/metagenomic_analysis.yml
+++ b/usegalaxy.org.au/metagenomic_analysis.yml
@@ -9,8 +9,8 @@ tools:
 - name: cat_summarise
   owner: iuc
   revisions:
-  - 388e6678fa98
   - 7f1aaa1932d8
+  - 388e6678fa98
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: combine_metaphlan2_humann2
@@ -22,63 +22,63 @@ tools:
 - name: dada2_assigntaxonomyaddspecies
   owner: iuc
   revisions:
-  - 63f86089423e
   - 76d3d2b10738
   - 5b5a7af9fbb4
+  - 63f86089423e
   - 7c2100246a2f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_dada
   owner: iuc
   revisions:
-  - 84fd33a60b35
+  - 18a502a9d287
   - 96336c6a2bb7
+  - 84fd33a60b35
   - 1c35dadbe76f
-  - 18a502a9d287
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_filterandtrim
   owner: iuc
   revisions:
+  - a9f4a217dcd6
   - 34e55239e68b
   - addaf9d22850
   - f732237754fc
-  - a9f4a217dcd6
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_learnerrors
   owner: iuc
   revisions:
+  - 0776d824d896
   - 8c202e741d68
   - 75403243703a
   - 04c15826a0b8
-  - 0776d824d896
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_makesequencetable
   owner: iuc
   revisions:
-  - e96bbb9e24ea
   - 43c99742158b
   - 8470de786d47
+  - e96bbb9e24ea
   - 1c9b3bcd4261
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_mergepairs
   owner: iuc
   revisions:
-  - 84743da21318
   - 306a40d4bb8f
-  - 5c865a382933
   - 1d75bd0595e2
+  - 5c865a382933
+  - 84743da21318
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_plotcomplexity
   owner: iuc
   revisions:
-  - 8daf4564ccda
   - 555ccac8a4c5
   - ac72310b038a
+  - 8daf4564ccda
   - 78faebd0879c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -86,57 +86,57 @@ tools:
   owner: iuc
   revisions:
   - 7b8cb2b02978
-  - f947b4bb5107
-  - d60df8727f59
   - a58e4a43f49c
+  - d60df8727f59
+  - f947b4bb5107
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_removebimeradenovo
   owner: iuc
   revisions:
   - 7136e9ab70db
-  - 1bc3657cd694
   - 04144473e59e
   - 7f3b59dee073
+  - 1bc3657cd694
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dada2_seqcounts
   owner: iuc
   revisions:
-  - d943081510da
+  - 0a1224c4b781
   - 19299bb1c6af
+  - d943081510da
   - 9058d8943303
-  - 0a1224c4b781
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: fasttree
   owner: iuc
   revisions:
-  - e005e659ae21
   - c7e73acfa3eb
+  - e005e659ae21
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gtdbtk_classify_wf
   owner: iuc
   revisions:
-  - 6501b5b33988
   - dbf1798c0dcc
+  - 6501b5b33988
   - c4db8c4de66f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hifiasm_meta
   owner: galaxy-australia
   revisions:
-  - 15dbb444df71
   - fa35f1106d3e
+  - 15dbb444df71
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_genefamilies_genus_level
   owner: iuc
   revisions:
   - 6d364c65c946
-  - 6c84982ee6f7
   - 654548ae1357
+  - 6c84982ee6f7
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_join_tables
@@ -148,25 +148,25 @@ tools:
 - name: humann2_regroup_table
   owner: iuc
   revisions:
-  - e66ab198ec15
   - 6aad8ca3918b
   - bd7a9c6efb10
+  - e66ab198ec15
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_renorm_table
   owner: iuc
   revisions:
+  - d77397f09da1
   - b084117133af
   - c6676a890f50
-  - d77397f09da1
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2_unpack_pathways
   owner: iuc
   revisions:
-  - 7f208f1eb64f
-  - cad93abecac9
   - 9704f1a3b32d
+  - cad93abecac9
+  - 7f208f1eb64f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann2
@@ -178,59 +178,59 @@ tools:
 - name: humann_regroup_table
   owner: iuc
   revisions:
+  - 31c6d107e7a5
+  - 79706f10d680
   - c409a495841f
   - e88b731dad59
-  - 79706f10d680
-  - 31c6d107e7a5
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_rename_table
   owner: iuc
   revisions:
-  - 714d5a28cc5c
-  - 094ad9c068af
   - 71ea608ddfa3
-  - d24841f5c3d2
+  - 094ad9c068af
   - 172920f67a84
+  - d24841f5c3d2
+  - 714d5a28cc5c
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_renorm_table
   owner: iuc
   revisions:
   - 12fb63b5f63f
-  - a4d7148ccee4
-  - a293a742194f
   - 4137b492233e
+  - a4d7148ccee4
   - d7e9a3c41657
+  - a293a742194f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_split_stratified_table
   owner: iuc
   revisions:
-  - 97f7bb0851e7
-  - 6fcb8ac37a3e
+  - e2c71b852aba
   - 64bc7acc22a9
   - 75bedfb2078b
-  - e2c71b852aba
+  - 97f7bb0851e7
+  - 6fcb8ac37a3e
   - cf87759761eb
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann_unpack_pathways
   owner: iuc
   revisions:
-  - 080ea153677c
   - 5e5a999ffaa9
-  - c82508e76ad1
   - 2d35528d2141
+  - c82508e76ad1
+  - 080ea153677c
   - 4033827c76b8
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: humann
   owner: iuc
   revisions:
-  - 6b7622dda516
   - 95bf7479d53c
   - fc6c328c292f
+  - 6b7622dda516
   - 2cd76b089570
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -291,8 +291,8 @@ tools:
 - name: kraken2
   owner: iuc
   revisions:
-  - 328c607150ff
   - 4a9da2b6c2e3
+  - 328c607150ff
   - e674066930b2
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -319,8 +319,8 @@ tools:
 - name: kraken_report
   owner: devteam
   revisions:
-  - 6c09bed3444f
   - 1902d3de4a4f
+  - 6c09bed3444f
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: kraken_translate
@@ -345,8 +345,8 @@ tools:
 - name: krakentools_kreport2krona
   owner: iuc
   revisions:
-  - 88d274322340
   - 2deaada69b14
+  - 88d274322340
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mash_sketch
@@ -370,19 +370,19 @@ tools:
 - name: merge_metaphlan_tables
   owner: iuc
   revisions:
-  - 27250f92a01a
+  - e073891b2afc
+  - 0270541aaf46
   - 2cff76cf35c6
   - 4fd3b5d8706b
-  - 0270541aaf46
-  - e073891b2afc
+  - 27250f92a01a
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metabat2
   owner: iuc
   revisions:
-  - 76bc4efa1aeb
-  - 708abf08a626
   - eb50e7eca3dc
+  - 708abf08a626
+  - 76bc4efa1aeb
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metadegalaxy_pear_stats
@@ -448,20 +448,20 @@ tools:
 - name: metaphlan2krona
   owner: iuc
   revisions:
-  - fdbd63e92b01
   - ebb74774457e
+  - fdbd63e92b01
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaphlan
   owner: iuc
   revisions:
-  - 1a6cdf55390f
-  - a16313517e55
-  - b89b0765695d
   - 6dee4abadccb
   - 2131d7dca455
   - ff8f55893e7d
   - a92a632c4d9b
+  - b89b0765695d
+  - 1a6cdf55390f
+  - a16313517e55
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metawrapmg_binning
@@ -552,8 +552,8 @@ tools:
 - name: picrust_normalize_by_copy_number
   owner: iuc
   revisions:
-  - 2e62e32d4f33
   - 3bd5f5afb9b1
+  - 2e62e32d4f33
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: picrust_predict_metagenomes
@@ -571,20 +571,20 @@ tools:
 - name: staramr
   owner: nml
   revisions:
-  - 2fd4d4c9c5c2
   - 141afacabcfa
-  - 4d83eccf5f81
   - aeaa20b96ef2
-  - 4b9a8031ab74
+  - 4d83eccf5f81
   - be818ae858e4
+  - 4b9a8031ab74
+  - 2fd4d4c9c5c2
   - 3b22de20bd4b
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vsearch
   owner: iuc
   revisions:
-  - b3c7199d8786
-  - 9495df9dd6ef
   - 576963db5f1b
+  - 9495df9dd6ef
+  - b3c7199d8786
   tool_panel_section_label: Metagenomic Analysis
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/mothur.yml b/usegalaxy.org.au/mothur.yml
index ddf17d6df..3cbe17e3d 100644
--- a/usegalaxy.org.au/mothur.yml
+++ b/usegalaxy.org.au/mothur.yml
@@ -652,8 +652,8 @@ tools:
 - name: mothur_screen_seqs
   owner: iuc
   revisions:
-  - f4d7d5755f01
   - 63b74bfc8052
+  - f4d7d5755f01
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_sens_spec
@@ -707,8 +707,8 @@ tools:
 - name: mothur_sub_sample
   owner: iuc
   revisions:
-  - e866e31f6da3
   - 67cb43432196
+  - e866e31f6da3
   tool_panel_section_label: Mothur
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mothur_summary_qual
diff --git a/usegalaxy.org.au/multiple_alignments.yml b/usegalaxy.org.au/multiple_alignments.yml
index a9effd174..46aff1aca 100644
--- a/usegalaxy.org.au/multiple_alignments.yml
+++ b/usegalaxy.org.au/multiple_alignments.yml
@@ -2,37 +2,37 @@ tools:
 - name: cactus_cactus
   owner: galaxy-australia
   revisions:
-  - 9422c5a87ee2
-  - 8b67dd48fec1
-  - 9baa871cb1d1
   - cd07731e4434
-  - 94b8c6013083
+  - 9baa871cb1d1
+  - 9eeb13a92d79
+  - 2263989660f5
+  - bdfbaf0c10aa
   - 6ae5a7b5a0a2
+  - 9422c5a87ee2
+  - 94b8c6013083
+  - 8b67dd48fec1
   - a74dbfee5a86
   - 80f03df2e2ce
-  - 2263989660f5
   - 48c13389050d
-  - bdfbaf0c10aa
-  - 9eeb13a92d79
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cactus_export
   owner: galaxy-australia
   revisions:
-  - f0af8936ed41
-  - be78f13134e2
-  - f14193ec1f50
-  - 5abf2c2249aa
+  - d7ce0ec78e51
   - aaa0d6a8b808
-  - '764845535798'
-  - fc2e49f91e52
   - 2e093badc689
-  - 3ff17bad4006
-  - d7ce0ec78e51
+  - be78f13134e2
+  - fc2e49f91e52
   - bc3831dd65c1
-  - 4a60927aaca5
-  - c18157c68134
+  - 5abf2c2249aa
   - d390fe1567dc
+  - 3ff17bad4006
+  - '764845535798'
+  - f14193ec1f50
+  - f0af8936ed41
+  - c18157c68134
+  - 4a60927aaca5
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cdhit
@@ -51,8 +51,8 @@ tools:
 - name: clustalw
   owner: devteam
   revisions:
-  - 5b097fde95dd
   - d6694932c5e0
+  - 5b097fde95dd
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gecko
@@ -64,19 +64,19 @@ tools:
 - name: mafft
   owner: rnateam
   revisions:
-  - 15974dd17515
-  - f0d493f8f84f
   - c5908940967d
-  - f1a5908ea2cb
   - 6f28e90db932
+  - f1a5908ea2cb
+  - f0d493f8f84f
+  - 15974dd17515
   - a65296ffb4a0
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_delta_filter
   owner: iuc
   revisions:
-  - fbca557a4847
   - b3acbb3a6af0
+  - fbca557a4847
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_dnadiff
@@ -89,15 +89,15 @@ tools:
 - name: mummer_mummer
   owner: iuc
   revisions:
-  - 48823c9635a4
   - bcd65de9725b
+  - 48823c9635a4
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_mummerplot
   owner: iuc
   revisions:
-  - ebe3b0f84de9
   - 4fc0cb2ac8ae
+  - ebe3b0f84de9
   tool_panel_section_label: Multiple Alignments
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mummer_nucmer
diff --git a/usegalaxy.org.au/nanopore.yml b/usegalaxy.org.au/nanopore.yml
index 06cc653e6..027f0eda5 100644
--- a/usegalaxy.org.au/nanopore.yml
+++ b/usegalaxy.org.au/nanopore.yml
@@ -2,11 +2,11 @@ tools:
 - name: medaka_consensus_pipeline
   owner: iuc
   revisions:
-  - 79e9a869f40e
-  - fc8804320156
-  - 72b5e9dda577
   - 0e9e7fcdd543
   - a7228a7ea146
+  - 79e9a869f40e
+  - 72b5e9dda577
+  - fc8804320156
   - cb34f00cc10f
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -14,23 +14,23 @@ tools:
   owner: iuc
   revisions:
   - db25ec99c3ea
-  - d6cddc06aeae
   - 18505fe2bdb1
   - fa11aa8103b2
+  - d6cddc06aeae
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: medaka_variant
   owner: iuc
   revisions:
+  - ec699520444c
   - 19f3b583a9b3
-  - eb746fa6f514
-  - cc36773a3681
   - 43815fa60f3a
-  - 0f5f4a208660
-  - 222669c4afb6
   - edf6d4003fad
+  - 222669c4afb6
+  - 0f5f4a208660
+  - cc36773a3681
   - 2bf63b38ee9b
-  - ec699520444c
+  - eb746fa6f514
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanocompore_sampcomp
@@ -49,33 +49,33 @@ tools:
 - name: nanoplot
   owner: iuc
   revisions:
+  - 0f1c34698076
   - 645159bcee2d
   - a3c4fe6f49ab
   - edbb6c5028f5
-  - 0f1c34698076
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_eventalign
   owner: bgruening
   revisions:
+  - 3b6f94fc7e1d
   - 85a394edc247
   - d219b6d8158a
-  - 3b6f94fc7e1d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_methylation
   owner: bgruening
   revisions:
-  - be95355fef8d
   - a8d4be409446
   - 90a922f32523
+  - be95355fef8d
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nanopolish_polya
   owner: bgruening
   revisions:
-  - 449e9aeded2d
   - d376944466bf
+  - 449e9aeded2d
   - 4857d5bcce52
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -83,16 +83,16 @@ tools:
   owner: bgruening
   revisions:
   - de5b3d8f5b90
-  - a3afc5f0a96c
   - bec636361cfd
+  - a3afc5f0a96c
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: porechop
   owner: iuc
   revisions:
   - 93d623d9979c
-  - 543cbeef3949
   - 5f76b20953e5
+  - 543cbeef3949
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_events
@@ -111,8 +111,8 @@ tools:
 - name: poretools_hist
   owner: iuc
   revisions:
-  - 5a82eb9e1b89
   - 47936349f3e9
+  - 5a82eb9e1b89
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_nucdist
@@ -124,8 +124,8 @@ tools:
 - name: poretools_occupancy
   owner: iuc
   revisions:
-  - 338d15b8d6fb
   - 336791b5665f
+  - 338d15b8d6fb
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_qualdist
@@ -137,15 +137,15 @@ tools:
 - name: poretools_qualpos
   owner: iuc
   revisions:
-  - 4fe6b96aff72
   - 2e22ebec211a
+  - 4fe6b96aff72
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_squiggle
   owner: iuc
   revisions:
-  - 34553d0caa5e
   - ce8af9373061
+  - 34553d0caa5e
   tool_panel_section_label: Nanopore
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: poretools_stats
diff --git a/usegalaxy.org.au/none.yml b/usegalaxy.org.au/none.yml
index 57372d7ef..66ccb2f13 100644
--- a/usegalaxy.org.au/none.yml
+++ b/usegalaxy.org.au/none.yml
@@ -21,16 +21,16 @@ tools:
   owner: iuc
   revisions:
   - 3e73c97f025d
-  - d74850cf4e42
   - adfd6bf710bd
+  - d74850cf4e42
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bowtie2_index_builder
   owner: devteam
   revisions:
-  - 83da94c0e4a6
-  - 1586b111d2a3
   - 9dd107db92c2
+  - 1586b111d2a3
+  - 83da94c0e4a6
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_build_bracken_database
@@ -43,16 +43,16 @@ tools:
   owner: iuc
   revisions:
   - ed1518ce2237
-  - 19b6a2f0dbe2
   - e4b4837f06f5
   - 2f27f3b86827
+  - 19b6a2f0dbe2
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwa_mem_index_builder
   owner: devteam
   revisions:
-  - 46066df8813d
   - 9e993022c762
+  - 46066df8813d
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_bwameth_index_builder
@@ -64,23 +64,23 @@ tools:
 - name: data_manager_cat
   owner: iuc
   revisions:
-  - 74af283d8ebd
   - 472dabcb03bf
+  - 74af283d8ebd
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_dada2
   owner: iuc
   revisions:
+  - 38ccd4589990
   - 5711fc06a63e
   - 48a42ca61006
-  - 38ccd4589990
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_diamond_database_builder
   owner: bgruening
   revisions:
-  - 4a08b7b76b78
   - 5a0d0bee4f8d
+  - 4a08b7b76b78
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_eggnog_mapper_abspath
@@ -113,17 +113,17 @@ tools:
 - name: data_manager_gatk_picard_index_builder
   owner: devteam
   revisions:
-  - 9a40272f56d0
   - 6287d0ee459e
+  - 9a40272f56d0
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gemini_database_downloader
   owner: iuc
   revisions:
   - 52b6a4d98009
-  - 172815da3d41
   - b4b2b284230a
   - 27a6a256cd23
+  - 172815da3d41
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_gtdbtk_database_installer
@@ -135,8 +135,8 @@ tools:
 - name: data_manager_hisat2_index_builder
   owner: iuc
   revisions:
-  - d210e1f185bd
   - d74c740bdb25
+  - d210e1f185bd
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_humann2_database_downloader
@@ -148,9 +148,9 @@ tools:
 - name: data_manager_humann_database_downloader
   owner: iuc
   revisions:
+  - 19bbd19b74b3
   - fea85c467896
   - 87febc68b45b
-  - 19bbd19b74b3
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_interproscan
@@ -181,10 +181,10 @@ tools:
 - name: data_manager_metaphlan_database_downloader
   owner: iuc
   revisions:
-  - 9c43baa60906
+  - 5fe20c915fa6
   - 4ba60cb14cb0
   - 0cb27ea69dc1
-  - 5fe20c915fa6
+  - 9c43baa60906
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_mitos
@@ -196,18 +196,18 @@ tools:
 - name: data_manager_mothur_toolsuite
   owner: iuc
   revisions:
+  - aec831b54a5b
   - 9d09724f2bf1
   - 0db22932bc39
-  - aec831b54a5b
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_pangolearn
   owner: iuc
   revisions:
+  - 29c738066906
+  - 6e24e79d3d69
   - ed7a967cb11b
   - df30a2f1db55
-  - 6e24e79d3d69
-  - 29c738066906
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: data_manager_pharokka
@@ -240,8 +240,8 @@ tools:
 - name: data_manager_star_index_builder
   owner: iuc
   revisions:
-  - 64deddb6a8ec
   - c520a52b5174
+  - 64deddb6a8ec
   - d63c1442407f
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -298,8 +298,8 @@ tools:
 - name: overlay_segmentation_mask
   owner: imgteam
   revisions:
-  - 8ad39f493587
   - 22e573b7dcb1
+  - 8ad39f493587
   tool_panel_section_label: None
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: package_atlas_3_10
diff --git a/usegalaxy.org.au/phylogenetics.yml b/usegalaxy.org.au/phylogenetics.yml
index 782581e8c..22c767a05 100644
--- a/usegalaxy.org.au/phylogenetics.yml
+++ b/usegalaxy.org.au/phylogenetics.yml
@@ -33,61 +33,61 @@ tools:
 - name: hyphy_absrel
   owner: iuc
   revisions:
-  - '841557158611'
-  - c78f3d7dd1db
-  - d033ffc1c161
-  - cce7b18495e4
   - 107d3ba7024a
-  - f73435dc282b
-  - d7c7ef3353fe
+  - c78f3d7dd1db
   - a6619171428e
-  - 26de3a7b1cb9
-  - 6a457678efcb
-  - 81e66674859e
-  - 3f59ebfbfe3d
-  - 8834daeb9892
+  - cce7b18495e4
   - 3b8b5bde0bd9
   - 5a7c56a5cc08
+  - 6a457678efcb
   - b89cac5156ec
+  - 81e66674859e
+  - 8834daeb9892
   - f04a1264e2a2
+  - 3f59ebfbfe3d
+  - f73435dc282b
+  - d033ffc1c161
+  - 26de3a7b1cb9
+  - d7c7ef3353fe
+  - '841557158611'
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hyphy_gard
   owner: iuc
   revisions:
-  - 4755f52427c4
   - 5fcd1ece3a6e
-  - b0af57c1a968
+  - a185b079b095
+  - 7a2092844346
   - 3b96e92e8ec3
-  - 5b777002c2de
+  - 88c4aa435ded
   - e75442c7f4da
-  - 6283babe736e
-  - 6a726db04d4b
-  - 6223845127ea
   - df47d4845b62
-  - 7a2092844346
-  - 02b8758214b0
-  - a185b079b095
   - 659517798cc4
-  - 88c4aa435ded
+  - b0af57c1a968
+  - 6223845127ea
+  - 02b8758214b0
+  - 6a726db04d4b
+  - 5b777002c2de
   - aa8cc71438cf
+  - 4755f52427c4
+  - 6283babe736e
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: iqtree
   owner: iuc
   revisions:
   - b8476e82ac20
-  - 9b892d7f82cc
-  - f97743d52b87
   - d1c340a5664b
+  - f97743d52b87
   - c1d53e95327f
+  - 9b892d7f82cc
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: nextclade
   owner: iuc
   revisions:
-  - 128ba8da994f
   - feb40665d7cd
+  - 128ba8da994f
   - 9e10ba792be2
   - daddf188c13f
   tool_panel_section_label: Phylogenetics
@@ -101,53 +101,53 @@ tools:
 - name: pangolin
   owner: iuc
   revisions:
-  - ca0d8cf80567
+  - 42a174224817
+  - ca337cce3888
   - 9d61d3fa046c
-  - b6abccb1f25b
-  - 14ae456b8cc5
-  - 2fa9d4f1b48f
+  - 36912871ccdc
+  - 83a69484cb87
   - 03ed9524dcd1
-  - 42a174224817
-  - 437e28791761
-  - a2099fb98cdb
   - b7e297c2ede6
+  - 437e28791761
+  - abf6dbe8c9d7
   - 5f8727ff21e7
-  - 2f1019071464
-  - 81804a978fc0
-  - 36912871ccdc
-  - ca337cce3888
+  - a2099fb98cdb
   - 7bb8726be37c
-  - 83a69484cb87
-  - abf6dbe8c9d7
+  - 81804a978fc0
+  - 2f1019071464
+  - 14ae456b8cc5
+  - b6abccb1f25b
   - 3a43c3982401
+  - ca0d8cf80567
+  - 2fa9d4f1b48f
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: phyml
   owner: iuc
   revisions:
-  - 2bf47d57ebb5
   - 7157a5b34a68
+  - 2bf47d57ebb5
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raxml
   owner: iuc
   revisions:
+  - b1e68bbe4cef
+  - ba29b5e2a4be
   - a4b71be30c3c
-  - 29ff6a849eac
   - 73a469f7dc96
-  - b1e68bbe4cef
   - ea30d3089354
-  - ba29b5e2a4be
+  - 29ff6a849eac
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: roary
   owner: iuc
   revisions:
-  - 91887494eb97
   - dbe2b2204555
-  - e88a7de55d6e
   - 15ac71df11a0
+  - e88a7de55d6e
   - f1ccc8a6eb05
   - 809e42326fc2
+  - 91887494eb97
   tool_panel_section_label: Phylogenetics
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/picard.yml b/usegalaxy.org.au/picard.yml
index b7d574319..e34e09a1d 100644
--- a/usegalaxy.org.au/picard.yml
+++ b/usegalaxy.org.au/picard.yml
@@ -2,13 +2,13 @@ tools:
 - name: picard
   owner: devteam
   revisions:
+  - 1aac2a13842a
+  - f9242e01365a
   - b502c227b5e6
+  - f6ced08779c4
   - 7d34178f2812
+  - fc288950c3b7
   - 881d7645d1bf
   - a1f0b3f4b781
-  - fc288950c3b7
-  - f6ced08779c4
-  - f9242e01365a
-  - 1aac2a13842a
   tool_panel_section_label: Picard
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/proteomic_ai.yml b/usegalaxy.org.au/proteomic_ai.yml
index 0faf4dfec..a107781c8 100644
--- a/usegalaxy.org.au/proteomic_ai.yml
+++ b/usegalaxy.org.au/proteomic_ai.yml
@@ -2,14 +2,14 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
+  - 3bd420ec162d
+  - e4a053d67e24
+  - ca90d17ff51b
+  - a58f7eb0df2c
   - 7fbec959cf2b
-  - eb085b3dbaf8
   - d00e15139065
   - c0e71cb2bd1b
-  - ca90d17ff51b
   - 5b85006245f3
-  - 3bd420ec162d
-  - a58f7eb0df2c
-  - e4a053d67e24
+  - eb085b3dbaf8
   tool_panel_section_label: Proteomic AI
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/proteomics.yml b/usegalaxy.org.au/proteomics.yml
index eb74f53e8..3534c4782 100644
--- a/usegalaxy.org.au/proteomics.yml
+++ b/usegalaxy.org.au/proteomics.yml
@@ -2,85 +2,85 @@ tools:
 - name: cardinal_classification
   owner: galaxyp
   revisions:
+  - f28ad96b76dc
   - 277dc652246e
   - b18329a8ac14
   - ece627528a78
-  - b574b84afc4d
   - 0a18ac48ac53
-  - f28ad96b76dc
+  - b574b84afc4d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_combine
   owner: galaxyp
   revisions:
   - e215f71d7983
-  - bf06d196e23d
-  - e988563cc6e5
   - b41107d8fe89
   - 525f201b86c1
+  - bf06d196e23d
+  - e988563cc6e5
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_data_exporter
   owner: galaxyp
   revisions:
-  - 4fbffddde8cd
   - 8da3511c9467
+  - 4fbffddde8cd
   - bb6397b94018
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_filtering
   owner: galaxyp
   revisions:
-  - b8c79e70516d
   - f23d67e28cc8
-  - 528fb09022be
+  - b8c79e70516d
   - a8157342d9a3
+  - 528fb09022be
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_mz_images
   owner: galaxyp
   revisions:
-  - 80600735685d
-  - a95a82eb4d50
-  - a69865da6f80
   - 25b83cbd596a
+  - a95a82eb4d50
   - 59e85306eae5
+  - 80600735685d
+  - a69865da6f80
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_preprocessing
   owner: galaxyp
   revisions:
   - f1897eb07081
-  - e0669b1854b1
   - 611d80c0e29d
-  - 798da6bdff3d
   - ed9ed1e6cca2
+  - 798da6bdff3d
+  - e0669b1854b1
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_quality_report
   owner: galaxyp
   revisions:
-  - a7fb9b395ddf
-  - 5a35e3a8d013
   - 74b61bf5bc4b
+  - 5a35e3a8d013
+  - a7fb9b395ddf
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_segmentations
   owner: galaxyp
   revisions:
-  - df2187f9013b
-  - 82f6c2f4332d
   - cc430977c8ff
+  - 82f6c2f4332d
+  - df2187f9013b
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cardinal_spectra_plots
   owner: galaxyp
   revisions:
   - 1693b2126f30
-  - c5aa9fca18c6
+  - d2483487e077
   - 10566783d718
+  - c5aa9fca18c6
   - 043f9c91f686
-  - d2483487e077
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: custom_pro_db
@@ -98,8 +98,8 @@ tools:
 - name: diann
   owner: galaxyp
   revisions:
-  - 9fa3dbf06f17
   - ae4dc0c041f9
+  - 9fa3dbf06f17
   - bf0728e000cd
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -119,9 +119,9 @@ tools:
 - name: encyclopedia_quantify
   owner: galaxyp
   revisions:
+  - 4081e4faa4ab
   - 1c5cbf8f79ce
   - 0fa397f4f40b
-  - 4081e4faa4ab
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: encyclopedia_searchtolib
@@ -148,8 +148,8 @@ tools:
   owner: galaxyp
   revisions:
   - 160538a890a6
-  - e66f552a3c47
   - d286ff4600dd
+  - e66f552a3c47
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maldi_quant_preprocessing
@@ -169,16 +169,16 @@ tools:
 - name: maxquant
   owner: galaxyp
   revisions:
-  - e42225f8a659
-  - 8934bc76bb52
-  - 837224ad1694
+  - f522c08e900c
+  - 97a7f34fcb6a
   - 2133b0be850a
-  - 1f39c833f65f
+  - 37d669de2828
+  - 8934bc76bb52
   - 7f432d87c82c
+  - 837224ad1694
   - 4d17fcdeb8ff
-  - 97a7f34fcb6a
-  - f522c08e900c
-  - 37d669de2828
+  - e42225f8a659
+  - 1f39c833f65f
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_db
@@ -193,46 +193,46 @@ tools:
 - name: metaquantome_expand
   owner: galaxyp
   revisions:
-  - 4187b6df1a40
-  - 352b37c66d97
   - 990b4560ead7
+  - 4187b6df1a40
   - 1974224d63c2
+  - 352b37c66d97
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_filter
   owner: galaxyp
   revisions:
-  - 4f359549383c
+  - 99450519d727
   - a1daafbf5233
   - deaf035bbe9f
-  - 99450519d727
+  - 4f359549383c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_sample
   owner: galaxyp
   revisions:
+  - e79958768a2c
+  - c7745841de24
   - 40ca115438d2
   - c1343e3389ca
-  - c7745841de24
-  - e79958768a2c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_stat
   owner: galaxyp
   revisions:
   - d46d64e7964d
-  - d2eac53666f0
-  - da986f83631b
   - b648e45fd3cf
+  - da986f83631b
+  - d2eac53666f0
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: metaquantome_viz
   owner: galaxyp
   revisions:
+  - eb811f3018ea
   - 1199751329b0
-  - 9bf325045235
   - 944b43462104
-  - eb811f3018ea
+  - 9bf325045235
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: morpheus
@@ -250,41 +250,41 @@ tools:
 - name: msstats
   owner: galaxyp
   revisions:
-  - 593839e1f2c3
   - 8212e342e482
-  - 28434abe6c5c
   - b7034eff0db1
+  - 28434abe6c5c
+  - 593839e1f2c3
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: msstatstmt
   owner: galaxyp
   revisions:
-  - a5e394b36d87
   - bd1535813cfe
+  - a5e394b36d87
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_consensusid
   owner: galaxyp
   revisions:
   - 4e77b8f12cd3
-  - 8960fb791701
   - 01dbaf6a57e0
+  - 8960fb791701
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_decoydatabase
   owner: galaxyp
   revisions:
-  - 25529df60a81
   - 370141bc0da3
+  - 25529df60a81
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_falsediscoveryrate
   owner: galaxyp
   revisions:
+  - 9cdf15d3cfc8
+  - f7fef900f5b2
   - 518b1730cf2a
   - c9eff69a7c62
-  - f7fef900f5b2
-  - 9cdf15d3cfc8
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_featurefindermultiplex
@@ -307,32 +307,32 @@ tools:
   owner: galaxyp
   revisions:
   - 9b7977080f6d
-  - 5ad0b5bf1deb
   - 6634cad7d797
+  - 5ad0b5bf1deb
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filefilter
   owner: galaxyp
   revisions:
-  - d6878d27f051
-  - 0bb5056cb775
   - 05d5e1ddc985
+  - 0bb5056cb775
+  - d6878d27f051
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_fileinfo
   owner: galaxyp
   revisions:
-  - febd569ad26f
   - 5ad830edc021
   - 52ba9695e752
+  - febd569ad26f
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_filemerger
   owner: galaxyp
   revisions:
   - 92352a475eed
-  - 39e8fde08881
   - 27cba4c5fc42
+  - 39e8fde08881
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_highresprecursormasscorrector
@@ -346,26 +346,26 @@ tools:
 - name: openms_idconflictresolver
   owner: galaxyp
   revisions:
-  - c28f13cab67a
-  - 3720e349ba2a
   - 8a04ed1c1d1b
+  - 3720e349ba2a
+  - c28f13cab67a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idfilter
   owner: galaxyp
   revisions:
-  - c427a8628cbe
-  - ca799a7246e7
   - c55dddc5844a
+  - c427a8628cbe
   - 382cde407f81
+  - ca799a7246e7
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmapper
   owner: galaxyp
   revisions:
+  - 8ddb7bab1138
   - b5d0905419da
   - 39caaa778d2e
-  - 8ddb7bab1138
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idmerger
@@ -380,9 +380,9 @@ tools:
 - name: openms_idposteriorerrorprobability
   owner: galaxyp
   revisions:
+  - 111c3a00136d
   - 5d9f175dff81
   - c69f69d7867a
-  - 111c3a00136d
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_idscoreswitcher
@@ -396,16 +396,16 @@ tools:
 - name: openms_msfraggeradapter
   owner: galaxyp
   revisions:
-  - 9866e1170611
   - e133b5c8878f
+  - 9866e1170611
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_msgfplusadapter
   owner: galaxyp
   revisions:
+  - c18d8efa4474
   - 2b2a7551a857
   - a407b6790342
-  - c18d8efa4474
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_multiplexresolver
@@ -433,15 +433,15 @@ tools:
 - name: openms_openswathassaygenerator
   owner: galaxyp
   revisions:
-  - 8c01da82292c
   - 2a9ff56cb279
+  - 8c01da82292c
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathconfidencescoring
   owner: galaxyp
   revisions:
-  - e8f64a7dc470
   - 1bf940c18d93
+  - e8f64a7dc470
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_openswathdecoygenerator
@@ -489,18 +489,18 @@ tools:
 - name: openms_peakpickerhires
   owner: galaxyp
   revisions:
-  - decc397c3b7e
-  - 3d8d4ada5405
   - 5ae104d0da6e
+  - 3d8d4ada5405
+  - decc397c3b7e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_peptideindexer
   owner: galaxyp
   revisions:
-  - 539a3a4dcc9e
   - 5182338d5e7c
-  - dd173849c3d8
+  - 539a3a4dcc9e
   - e039cc5c7aed
+  - dd173849c3d8
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_proteinquantifier
@@ -519,8 +519,8 @@ tools:
 - name: openms_textexporter
   owner: galaxyp
   revisions:
-  - 9020199dba0a
   - d063e2fe4ba4
+  - 9020199dba0a
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: openms_xmlvalidator
@@ -532,16 +532,16 @@ tools:
 - name: openms_xtandemadapter
   owner: galaxyp
   revisions:
+  - 7f6a1f27553e
   - c8b225c69a7f
   - fb52e95a370c
-  - 7f6a1f27553e
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: pep_pointer
   owner: galaxyp
   revisions:
-  - 073a2965e3b2
   - a6282baa8c6f
+  - 073a2965e3b2
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: peptide_genomic_coordinate
@@ -554,13 +554,13 @@ tools:
 - name: peptideshaker
   owner: galaxyp
   revisions:
-  - 943a34df6047
-  - da885ca16cb2
-  - 3634c90301af
   - 3ec27b4cee7c
-  - 7fdd9119cc4f
-  - 07ff622ec007
+  - 3634c90301af
   - a72c48001f7c
+  - da885ca16cb2
+  - 07ff622ec007
+  - 7fdd9119cc4f
+  - 943a34df6047
   - 1beff3ddce58
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -615,10 +615,10 @@ tools:
 - name: uniprotxml_downloader
   owner: galaxyp
   revisions:
-  - 12692567c7f9
   - 265c35540faa
-  - a371252a2cf6
   - 1a5690a5eedc
+  - 12692567c7f9
+  - a371252a2cf6
   tool_panel_section_label: Proteomics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: xtandem
diff --git a/usegalaxy.org.au/rad_seq.yml b/usegalaxy.org.au/rad_seq.yml
index c2ee9d410..19d1c21f3 100644
--- a/usegalaxy.org.au/rad_seq.yml
+++ b/usegalaxy.org.au/rad_seq.yml
@@ -2,55 +2,55 @@ tools:
 - name: stacks2_clonefilter
   owner: iuc
   revisions:
-  - 42201b90e3f4
-  - e345aadf914f
   - cd5f98911089
+  - e345aadf914f
+  - 289b7d6b69a4
+  - 42201b90e3f4
   - 2f1d464ebfd2
   - 110a346daf36
-  - 289b7d6b69a4
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_cstacks
   owner: iuc
   revisions:
   - 8501601a118d
-  - 0cd2df8af811
   - c207119ba5f6
+  - 42d9087b4789
   - fcce77c09289
   - 0345dbaaa79b
-  - 42d9087b4789
+  - 0cd2df8af811
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_denovomap
   owner: iuc
   revisions:
-  - ad5ab22ffe24
-  - 405a212b32ab
-  - 33486216eec0
   - 89eb29319bf4
-  - 421c33b8bf17
+  - 33486216eec0
   - 04db7fd6b238
+  - 421c33b8bf17
+  - ad5ab22ffe24
+  - 405a212b32ab
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_gstacks
   owner: iuc
   revisions:
+  - 7b72fde3d27e
+  - f6e91108b7b1
   - 7370bb65bad4
   - fa51dc5e8386
-  - f6e91108b7b1
   - eb784fa07f80
-  - 7b72fde3d27e
   - 1d839ead7ad3
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_kmerfilter
   owner: iuc
   revisions:
-  - 1544278c272e
   - 3d70c2996730
-  - c9b77ced9a78
   - d30e36c48c93
   - 8a55d29c8fcf
+  - 1544278c272e
+  - c9b77ced9a78
   - a3e86cd9cac7
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -58,75 +58,75 @@ tools:
   owner: iuc
   revisions:
   - a5969aa9347e
-  - e2db212d64ad
-  - 7b881f5f5ad5
   - 887cf585cafc
+  - 7b881f5f5ad5
   - 564c33e5c3e3
   - b242deb58952
+  - e2db212d64ad
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_procrad
   owner: iuc
   revisions:
-  - e897c74a48bb
-  - 8cff84759bf6
+  - 9a171f9a450b
   - b4bab607eb05
   - bd5ff77e2036
-  - 9a171f9a450b
+  - 8cff84759bf6
+  - e897c74a48bb
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_refmap
   owner: iuc
   revisions:
-  - 5e10f396979e
   - 6dafad990086
-  - 887e0991eb24
   - 4f65e343ecdf
-  - adc7a7610d4f
+  - 887e0991eb24
   - 33f0793edf93
+  - 5e10f396979e
+  - adc7a7610d4f
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_shortreads
   owner: iuc
   revisions:
   - 43e3eeb2e0ec
-  - 97575d01f06b
-  - c5d7050e4ad7
+  - 4e280b27a831
   - 17d39bf0a63a
   - c287418eb288
-  - 4e280b27a831
+  - 97575d01f06b
+  - c5d7050e4ad7
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_sstacks
   owner: iuc
   revisions:
+  - d9bf483266a1
+  - a819ec3b362d
+  - cd034465d4a4
   - 0b8c84a7fdb5
-  - 9586f08634c0
   - 09b8edb56d80
-  - cd034465d4a4
-  - a819ec3b362d
-  - d9bf483266a1
+  - 9586f08634c0
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_tsv2bam
   owner: iuc
   revisions:
-  - a4b4bd84f69e
-  - 2645575d1bf2
-  - bf0e43ab0416
   - 69842dd5aa48
+  - 2645575d1bf2
   - a9c34a289493
   - 95351dd0fd3f
+  - a4b4bd84f69e
+  - bf0e43ab0416
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks2_ustacks
   owner: iuc
   revisions:
-  - d1fda11e602f
+  - cfb504394ae1
   - bb0475c884ff
-  - 912f904a6e1e
+  - d1fda11e602f
   - d033e1ccb386
-  - cfb504394ae1
+  - 912f904a6e1e
   - 8a35a3bc6752
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -195,8 +195,8 @@ tools:
 - name: stacks_sstacks
   owner: iuc
   revisions:
-  - 563af4497055
   - 96de7538bf0c
+  - 563af4497055
   tool_panel_section_label: RAD-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stacks_stats
diff --git a/usegalaxy.org.au/rna_seq.yml b/usegalaxy.org.au/rna_seq.yml
index ad9b99d89..dff8e732a 100644
--- a/usegalaxy.org.au/rna_seq.yml
+++ b/usegalaxy.org.au/rna_seq.yml
@@ -3,8 +3,8 @@ tools:
   owner: iuc
   revisions:
   - cf01dd6c6b1f
-  - 31f8063eedea
   - 2d4e3aff9dc7
+  - 31f8063eedea
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: arriba_get_filters
@@ -64,16 +64,16 @@ tools:
 - name: cuffmerge
   owner: devteam
   revisions:
-  - cf747d1bd79a
-  - 6a6717a5f421
   - 86285ddd4512
+  - 6a6717a5f421
+  - cf747d1bd79a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffnorm
   owner: devteam
   revisions:
-  - 9a854107dbb2
   - 6cbfede05833
+  - 9a854107dbb2
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cuffquant
@@ -97,30 +97,30 @@ tools:
 - name: describe_samples
   owner: iuc
   revisions:
-  - 3b36efd62b3e
+  - e3b16fd7dd08
   - 0693ccd171c4
   - 8f0181aacb7a
-  - e3b16fd7dd08
+  - 3b36efd62b3e
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: deseq2
   owner: iuc
   revisions:
-  - cd9874cb9019
-  - d027d1f4984e
-  - 9a882d108833
-  - 0696db066a5b
   - 8fe98f7094de
-  - 24a09ca67621
   - 6a3a025714d3
+  - 9a882d108833
+  - d027d1f4984e
+  - 24a09ca67621
+  - 0696db066a5b
+  - cd9874cb9019
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dexseq
   owner: iuc
   revisions:
-  - b47c006d90c5
   - df929f257179
   - 2872c633f07e
+  - b47c006d90c5
   - 62adf13b86ea
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -129,22 +129,22 @@ tools:
   revisions:
   - 5bf899c13979
   - df0c8d0a5992
-  - 0cb907a2a810
-  - f2843df56434
   - 334ce9b1bac5
+  - 6e53e565fc6a
+  - 0cb907a2a810
   - 555659de7321
   - a8305cf0c951
+  - 070900306913
+  - f2843df56434
   - 3d89af8a44f0
   - 9bdff28ae1b1
-  - 6e53e565fc6a
-  - 070900306913
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: egsea
   owner: iuc
   revisions:
-  - 31ea4992b948
   - fba1660fb717
+  - 31ea4992b948
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: express
@@ -156,17 +156,17 @@ tools:
 - name: featurecounts
   owner: iuc
   revisions:
+  - e6a2a912677a
   - a37612abf7f9
+  - 90d16db017d7
   - f3a5f075498f
   - a56fbe2d6ba7
-  - af814359d244
-  - e6a2a912677a
-  - 38b6d12edc68
   - ea04b737afa0
   - 6f66ae7c5f7a
-  - f9d49f5cb597
-  - 90d16db017d7
+  - af814359d244
   - 7db9d3ea71c9
+  - 38b6d12edc68
+  - f9d49f5cb597
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: filter_transcripts_via_tracking
@@ -184,9 +184,9 @@ tools:
 - name: gffcompare
   owner: iuc
   revisions:
+  - 3c97c841a443
   - 0f710191a66d
   - f99dd58de04f
-  - 3c97c841a443
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: heinz
@@ -198,13 +198,13 @@ tools:
 - name: hisat2
   owner: iuc
   revisions:
-  - 26371a1df031
-  - a86e80d3c09c
-  - d4b55e2beb12
-  - f4af63aaf57a
-  - 6ab42baa56e9
   - 3fb01a8c902d
+  - 6ab42baa56e9
+  - a86e80d3c09c
   - 6c19daec423d
+  - 26371a1df031
+  - f4af63aaf57a
+  - d4b55e2beb12
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: htseq_count
@@ -224,9 +224,9 @@ tools:
   owner: iuc
   revisions:
   - 1c75aa5de15e
-  - ce5d418183c5
-  - 01247aaf0a10
   - 87c11c05d238
+  - 01247aaf0a10
+  - ce5d418183c5
   - 5ae5c312d718
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -235,20 +235,20 @@ tools:
   revisions:
   - c971db6f0fe5
   - 40985510cd98
-  - 10c98fab6c5a
   - 4f9c4e6566e5
+  - 10c98fab6c5a
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: limma_voom
   owner: iuc
   revisions:
   - e827f9aae031
+  - 32511f586472
+  - 58c35179ebf0
   - d6f5fa4ee473
+  - 97e06a4c7c75
   - 708348a17fa1
   - 0921444c832d
-  - 58c35179ebf0
-  - 97e06a4c7c75
-  - 32511f586472
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mircounts
@@ -260,8 +260,8 @@ tools:
 - name: mirdeep2_mapper
   owner: rnateam
   revisions:
-  - a8d24f4b6d95
   - dbbe92348c7a
+  - a8d24f4b6d95
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mirdeep2_quantifier
@@ -297,19 +297,19 @@ tools:
 - name: rgrnastar
   owner: iuc
   revisions:
-  - 99b17b74a8cd
-  - 980d2a2e1180
+  - 3ea5a2a63fa2
+  - 4074fc1940e2
   - 0a563fd2f22e
+  - 5ec75f5dae3c
   - b9e04854e2bb
+  - 99b17b74a8cd
+  - 4df95e2d7f61
+  - 7ed2edc1337f
   - 79de45b5069b
-  - 5ec75f5dae3c
-  - 3ea5a2a63fa2
-  - 4074fc1940e2
   - e132e7d02a3e
-  - 7ed2edc1337f
   - c772497b2c32
-  - 4df95e2d7f61
   - c7c55b694974
+  - 980d2a2e1180
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sailfish
@@ -321,33 +321,33 @@ tools:
 - name: salmon
   owner: bgruening
   revisions:
-  - 15cd64d7c58b
-  - e3d32471da11
-  - cc05793bb896
   - 2c0ca397d302
+  - 53e9709776a0
+  - cc05793bb896
+  - e3d32471da11
+  - 15cd64d7c58b
   - ebab418107f5
   - 49121db48873
-  - 53e9709776a0
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: seurat
   owner: iuc
   revisions:
   - 56242ff81c84
-  - c0fd285eb553
   - fab6ff46e019
   - 8c28affc7c48
+  - c0fd285eb553
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: stringtie
   owner: iuc
   revisions:
   - 258d696dbd7e
-  - ae618321f34a
+  - cef79931dda5
   - dd4df992d93d
   - 1ebd14235b92
   - 914cfcba0ec8
-  - cef79931dda5
+  - ae618321f34a
   - 76d290331481
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -378,10 +378,10 @@ tools:
 - name: transdecoder
   owner: iuc
   revisions:
-  - ffd1300599a1
-  - 0db979fead3a
   - c6334cb383ff
   - d0d4cef4f967
+  - 0db979fead3a
+  - ffd1300599a1
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_abundance_estimates_to_matrix
@@ -396,87 +396,87 @@ tools:
 - name: trinity_align_and_estimate_abundance
   owner: iuc
   revisions:
+  - 56162e446004
   - c2b82a94493e
-  - 2fb4ee002432
   - 478f36effca1
-  - 56162e446004
+  - 2fb4ee002432
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_analyze_diff_expr
   owner: iuc
   revisions:
-  - fab23c3b5258
-  - 3f4094b6a565
   - 9ff3765e7172
+  - 3f4094b6a565
+  - fab23c3b5258
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_contig_exn50_statistic
   owner: iuc
   revisions:
-  - 34a018cbee9c
+  - 870ac06dff8e
   - be3f26533209
   - 4687ecf0eb2d
-  - 870ac06dff8e
+  - 34a018cbee9c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_define_clusters_by_cutting_tree
   owner: iuc
   revisions:
   - c5fbddcac63a
+  - 05ab8d5e04a2
+  - 5192f657f305
   - 33406f5a445c
   - 65e7dea767ea
-  - 5192f657f305
-  - 05ab8d5e04a2
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_filter_low_expr_transcripts
   owner: iuc
   revisions:
-  - 6f0fb35b799c
-  - e406ac71165d
   - 1fdb25a8384d
+  - e406ac71165d
   - a35cba31d904
+  - 6f0fb35b799c
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_gene_to_trans_map
   owner: iuc
   revisions:
-  - 964b7efe2639
-  - 7c7fbf13aadd
-  - c2c039e421af
   - 37a1129c89d2
+  - c2c039e421af
+  - 7c7fbf13aadd
+  - 964b7efe2639
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_run_de_analysis
   owner: iuc
   revisions:
-  - 24e94d84adc9
   - eafea3083352
-  - 047c22569787
+  - 24e94d84adc9
   - 1d689e4e1caf
+  - 047c22569787
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity_samples_qccheck
   owner: iuc
   revisions:
   - 9871104ea630
-  - 04bb8bb7c198
   - 3a4ac03d1266
   - 1812dbc5bb7b
+  - 04bb8bb7c198
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinity
   owner: iuc
   revisions:
-  - d84caa5a98ad
-  - c9cfec002f71
-  - 32b86cd8eb50
-  - 8f1c3df4dd49
-  - 9fa24d5aac68
   - d2bc35f3d1c5
-  - db1f362cca3e
   - 48636f857c4b
+  - 32b86cd8eb50
   - cee61b3fcf78
+  - 9fa24d5aac68
+  - 8f1c3df4dd49
+  - d84caa5a98ad
+  - db1f362cca3e
+  - c9cfec002f71
   tool_panel_section_label: RNA-seq
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trinotate
diff --git a/usegalaxy.org.au/rseqc.yml b/usegalaxy.org.au/rseqc.yml
index b2c45c52e..ba833d62f 100644
--- a/usegalaxy.org.au/rseqc.yml
+++ b/usegalaxy.org.au/rseqc.yml
@@ -2,8 +2,8 @@ tools:
 - name: rseqc
   owner: nilesh
   revisions:
+  - 473382134e56
   - 1a052c827e88
   - 080fd5739bb4
-  - 473382134e56
   tool_panel_section_label: RSeQC
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/sambam.yml b/usegalaxy.org.au/sambam.yml
index 7a3eb7a94..684557a92 100644
--- a/usegalaxy.org.au/sambam.yml
+++ b/usegalaxy.org.au/sambam.yml
@@ -2,17 +2,17 @@ tools:
 - name: bam_to_sam
   owner: devteam
   revisions:
-  - 88eedb4abea0
   - a53efedba9e7
+  - 88eedb4abea0
   - 10184eaa85fc
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamtools_filter
   owner: devteam
   revisions:
-  - cb20f99fd45b
-  - 108db6635177
   - 1dfd95ee241e
+  - 108db6635177
+  - cb20f99fd45b
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bamutil_diff
@@ -42,8 +42,8 @@ tools:
 - name: qualimap_bamqc
   owner: iuc
   revisions:
-  - 5f8e69cc4c6e
   - 19ece8afbaab
+  - 5f8e69cc4c6e
   - e7fd6754d093
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -75,8 +75,8 @@ tools:
 - name: sam_to_bam
   owner: devteam
   revisions:
-  - cf1ffd88f895
   - 9bd1568619cd
+  - cf1ffd88f895
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sambamba
@@ -95,83 +95,83 @@ tools:
 - name: samtools_bedcov
   owner: devteam
   revisions:
+  - 9149ad20699a
   - 12749212f61b
   - 46c6639921f1
   - 6856f8a01905
-  - 9149ad20699a
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_calmd
   owner: devteam
   revisions:
   - c89806670ab9
-  - 06dc50b7b711
-  - 92ec40abcdcf
   - 33208952b99d
+  - 92ec40abcdcf
+  - 06dc50b7b711
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_fastx
   owner: iuc
   revisions:
-  - 720217c23995
-  - b3d99709fe1a
   - a8d69aee190e
   - 66e23b11feae
+  - b3d99709fe1a
+  - 720217c23995
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_flagstat
   owner: devteam
   revisions:
   - fefd89ab563c
+  - fe34990e5ce7
   - cc61ade70eb8
   - 22970df7a40e
-  - fe34990e5ce7
   - db17d5321bad
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_idxstats
   owner: devteam
   revisions:
-  - 7a6034296ae9
   - 7def34e6cf4d
+  - 7a6034296ae9
+  - 88b8c2916784
   - 811fc2d75ad4
   - fa5d3e61e429
-  - 88b8c2916784
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_merge
   owner: iuc
   revisions:
   - 740ce0a18f0d
-  - b40e2d865d52
-  - 65a38e8c8e2a
   - 36677f429310
+  - 65a38e8c8e2a
+  - b40e2d865d52
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_mpileup
   owner: devteam
   revisions:
   - 329deb17a9f7
-  - 8da515fbc1bf
   - b61f5d6a7f25
-  - 9da0311ab1dd
   - 583abf29fc8e
+  - 9da0311ab1dd
+  - 8da515fbc1bf
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_phase
   owner: devteam
   revisions:
-  - 1e5880498f52
   - b5c3b1856370
+  - 1e5880498f52
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_reheader
   owner: devteam
   revisions:
   - d7b4851d1971
-  - 30388d878f81
   - bb8cfc6f6e0c
   - db000c6007a0
+  - 30388d878f81
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_rmdup
@@ -183,18 +183,18 @@ tools:
 - name: samtools_slice_bam
   owner: devteam
   revisions:
-  - b5c88b7b153e
   - 344fc91e1bfd
+  - b5c88b7b153e
   - a4a10c7924d1
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_sort
   owner: devteam
   revisions:
-  - cab3f8d35989
+  - a577ea614bed
   - 6c2c1836728b
+  - cab3f8d35989
   - e613c1ad4c4c
-  - a577ea614bed
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_split
@@ -202,31 +202,31 @@ tools:
   revisions:
   - 5d9ae78f34d3
   - 135c85f4cfaf
-  - b7f7826ef1cd
   - bcedabb53ddf
+  - b7f7826ef1cd
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_stats
   owner: devteam
   revisions:
-  - 5a08c09b9311
-  - 3a0efe14891f
-  - fed4aa48ba09
-  - 1cc79f49b8d5
   - 145f6d74ff5e
+  - 1cc79f49b8d5
+  - fed4aa48ba09
+  - 5a08c09b9311
   - 24c5d43cb545
+  - 3a0efe14891f
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: samtools_view
   owner: iuc
   revisions:
-  - b72793637686
-  - 350bbc5c2ffd
-  - c370440f901e
-  - 0dbf49c414ae
-  - 6be888be75f9
   - bf328cec6a42
+  - 0dbf49c414ae
   - 5826298f6a73
+  - 6be888be75f9
   - b01db2684fa5
+  - b72793637686
+  - 350bbc5c2ffd
+  - c370440f901e
   tool_panel_section_label: SAM/BAM
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/send_data.yml b/usegalaxy.org.au/send_data.yml
index d5afbad0a..84c3df221 100644
--- a/usegalaxy.org.au/send_data.yml
+++ b/usegalaxy.org.au/send_data.yml
@@ -2,11 +2,11 @@ tools:
 - name: ena_upload
   owner: iuc
   revisions:
-  - a62c4a11a67d
   - 480d9e9d156b
   - 6f6537780379
-  - 59bb6d34fca6
-  - d147d6455873
   - 4aab5ae907b6
+  - a62c4a11a67d
+  - d147d6455873
+  - 59bb6d34fca6
   tool_panel_section_label: Send Data
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/single_cell.yml b/usegalaxy.org.au/single_cell.yml
index 650a2acf2..2abab24a0 100644
--- a/usegalaxy.org.au/single_cell.yml
+++ b/usegalaxy.org.au/single_cell.yml
@@ -2,21 +2,21 @@ tools:
 - name: anndata_import
   owner: iuc
   revisions:
-  - 32e547223c9e
   - cfc3f5a57dc6
+  - fb9e030ffae4
   - 00712416fdaa
+  - 32e547223c9e
   - 93dd15e13e6a
-  - fb9e030ffae4
   - 55e35e9203cf
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: anndata_inspect
   owner: iuc
   revisions:
+  - ee98d611afc6
+  - 39e945f0b2c1
   - 688357ad5e61
   - 038e32885fec
-  - 39e945f0b2c1
-  - ee98d611afc6
   - b9fac48532eb
   - 6f0d0c784f09
   tool_panel_section_label: Single-cell
@@ -24,21 +24,21 @@ tools:
 - name: anndata_manipulate
   owner: iuc
   revisions:
-  - ed4996a16f7f
-  - 43cb7b5a6fe7
   - 9bd945a03d7b
-  - b85871dd69f9
-  - d4af736e7b83
   - 3d748954434b
+  - d4af736e7b83
+  - ed4996a16f7f
+  - b85871dd69f9
+  - 43cb7b5a6fe7
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dropletutils
   owner: iuc
   revisions:
-  - cdf4443d5625
   - a9caad671439
   - 2c1200fba922
   - 8855361fcfc5
+  - cdf4443d5625
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: music_compare
@@ -77,8 +77,8 @@ tools:
 - name: raceid_clustering
   owner: iuc
   revisions:
-  - 0bff0ee0683a
   - f911a64454fb
+  - 0bff0ee0683a
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_inspectclusters
@@ -91,42 +91,42 @@ tools:
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
-  - df8e4e54d367
   - a6821f856a1e
+  - df8e4e54d367
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: raceid_trajectory
   owner: iuc
   revisions:
-  - c92d0f9338c5
   - 2af7c5086a96
+  - c92d0f9338c5
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_cluster_reduce_dimension
   owner: iuc
   revisions:
+  - 77b91b9bdf52
   - 6acb08931836
   - b2df381a6004
-  - 77b91b9bdf52
   - aaa5da8e73a9
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_filter
   owner: iuc
   revisions:
+  - a03ff8633507
   - a97abb8cd15b
   - b409c2486353
   - 3c86f71498bc
-  - a03ff8633507
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_inspect
   owner: iuc
   revisions:
+  - 3081ff5c84a3
   - 6bd82ed14acd
-  - 5e9171dc8244
   - c5d3684f7c4c
-  - 3081ff5c84a3
+  - 5e9171dc8244
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_normalize
@@ -141,20 +141,20 @@ tools:
 - name: scanpy_plot
   owner: iuc
   revisions:
-  - 6adf98e782f3
-  - aa0c474463c2
-  - dbbe1ea8ecb1
   - 9b0cdb8cf6be
+  - dbbe1ea8ecb1
+  - aa0c474463c2
+  - 6adf98e782f3
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scanpy_remove_confounders
   owner: iuc
   revisions:
+  - 73ab2ac53d06
+  - 215733a383f2
   - f2f6c703da06
-  - bf2017df9837
   - 458e8f43a775
-  - 215733a383f2
-  - 73ab2ac53d06
+  - bf2017df9837
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_create_qcmetric_ready_sce
@@ -168,24 +168,24 @@ tools:
 - name: scater_filter
   owner: iuc
   revisions:
-  - 7a365ec81b52
   - b7ea9f09c02f
+  - 7a365ec81b52
   - 652923ce664f
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_dist_scatter
   owner: iuc
   revisions:
-  - 2e41b35b5bdd
   - ef4c80837bc5
   - 81e5bdff4853
+  - 2e41b35b5bdd
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: scater_plot_pca
   owner: iuc
   revisions:
-  - 46fc6751d746
-  - c99ba278dfa9
   - 9e5c0bb18d08
+  - c99ba278dfa9
+  - 46fc6751d746
   tool_panel_section_label: Single-cell
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/statistics.yml b/usegalaxy.org.au/statistics.yml
index be4b4a39c..dfde129e6 100644
--- a/usegalaxy.org.au/statistics.yml
+++ b/usegalaxy.org.au/statistics.yml
@@ -32,11 +32,11 @@ tools:
 - name: datamash_ops
   owner: iuc
   revisions:
-  - 562f3c677828
-  - 2f3c6f2dcf39
-  - 419027d822d6
   - 4c07ddedc198
+  - 419027d822d6
   - 746e8e4bf929
+  - 2f3c6f2dcf39
+  - 562f3c677828
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_cor_ava_perclass
@@ -49,15 +49,15 @@ tools:
 - name: dwt_cor_avb_all
   owner: devteam
   revisions:
-  - 8564f6927b87
   - e01e8a9a82f4
+  - 8564f6927b87
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_ivc_all
   owner: devteam
   revisions:
-  - 0b89b03ad760
   - 506ae7b0d85d
+  - 0b89b03ad760
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: dwt_var_perclass
@@ -114,21 +114,21 @@ tools:
 - name: sklearn_build_pipeline
   owner: bgruening
   revisions:
-  - b1eda492f063
+  - 840f29aad145
+  - 7442b94d6a1e
   - 4c4ec859c31a
   - aef56d0e7a61
   - 9c3e1d3235c8
-  - 840f29aad145
-  - 7442b94d6a1e
+  - b1eda492f063
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_estimator_attributes
   owner: bgruening
   revisions:
   - 30d21a6041f6
-  - 07843f917990
   - 375bbd555f4a
   - d0352e8b4c10
+  - 07843f917990
   - 9fda0b82f419
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -136,21 +136,21 @@ tools:
   owner: bgruening
   revisions:
   - 7ae443e6217d
-  - 2c58b83c9bad
   - 4cc980df6265
-  - 8b1b2b91f8d0
   - cd02bf168d23
+  - 8b1b2b91f8d0
+  - 2c58b83c9bad
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
-  - 4bbaf77573ef
-  - bb9fc9d46ea4
-  - 1dd433d2c92c
+  - ad7e0b4291ee
   - 7dd3fb35904f
+  - 1dd433d2c92c
+  - bb9fc9d46ea4
+  - 4bbaf77573ef
   - e10e776f2109
-  - ad7e0b4291ee
   tool_panel_section_label: Statistics
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: t_test_two_samples
diff --git a/usegalaxy.org.au/text_manipulation.yml b/usegalaxy.org.au/text_manipulation.yml
index 7f0608665..c13068793 100644
--- a/usegalaxy.org.au/text_manipulation.yml
+++ b/usegalaxy.org.au/text_manipulation.yml
@@ -8,8 +8,8 @@ tools:
 - name: add_value
   owner: devteam
   revisions:
-  - 745871c0b055
   - 023f0a3760b3
+  - 745871c0b055
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: collection_element_identifiers
@@ -28,13 +28,13 @@ tools:
 - name: column_maker
   owner: devteam
   revisions:
-  - 464b9305180e
-  - 6595517c2dd8
-  - be25c075ed54
-  - 9cd341095afd
   - 02026300aa45
-  - 13b6f0007d9e
+  - be25c075ed54
   - 6e8d94597139
+  - 6595517c2dd8
+  - 464b9305180e
+  - 13b6f0007d9e
+  - 9cd341095afd
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: column_remove_by_header
@@ -46,8 +46,8 @@ tools:
 - name: concatenate_multiple_datasets
   owner: artbio
   revisions:
-  - 3a4694d4354f
   - 6f54dc6b37da
+  - 3a4694d4354f
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: concatenate_multiple_datasets
@@ -71,10 +71,10 @@ tools:
 - name: filter_tabular
   owner: iuc
   revisions:
-  - 557ec8d7087d
+  - 37cde8134c6a
   - 9cc411a62277
+  - 557ec8d7087d
   - 34d29339abab
-  - 37cde8134c6a
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: gff3_rebase
@@ -98,20 +98,20 @@ tools:
 - name: merge_cols
   owner: devteam
   revisions:
-  - dd40b1e9eebe
   - ae7843d06f8f
+  - dd40b1e9eebe
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: query_tabular
   owner: iuc
   revisions:
-  - 2e8f945f7285
   - 3a6b78c39dca
-  - 623f3eb7aa48
-  - 33d61c89fb8d
-  - 1ea4e668bf73
   - cf34c344508d
+  - 1ea4e668bf73
+  - 623f3eb7aa48
   - 83069b38aa85
+  - 2e8f945f7285
+  - 33d61c89fb8d
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: regex_find_replace
@@ -131,26 +131,26 @@ tools:
 - name: sqlite_to_tabular
   owner: iuc
   revisions:
-  - b722161a845a
-  - bce29ec10b78
   - f768f6183386
+  - bce29ec10b78
+  - b722161a845a
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: table_compute
   owner: iuc
   revisions:
-  - 3bf5661c0280
   - 60ff16842fcd
+  - 3bf5661c0280
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: text_processing
   owner: bgruening
   revisions:
+  - ddf54b12c295
+  - a6f147a050a2
   - d698c222f354
+  - 74a8bef53a00
   - 9ff72e942410
-  - ddf54b12c295
   - f46f0e4f75c4
-  - 74a8bef53a00
-  - a6f147a050a2
   tool_panel_section_label: Text Manipulation
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/variant_calling.yml b/usegalaxy.org.au/variant_calling.yml
index e8cfd8202..a1eaf2668 100644
--- a/usegalaxy.org.au/variant_calling.yml
+++ b/usegalaxy.org.au/variant_calling.yml
@@ -3,8 +3,8 @@ tools:
   owner: iuc
   revisions:
   - 85c57cc9b558
-  - 0d18a3ba2d1c
   - 82fb5e3bb93e
+  - 0d18a3ba2d1c
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cutesv
@@ -16,57 +16,57 @@ tools:
 - name: freebayes
   owner: devteam
   revisions:
-  - 04fa42777df9
-  - ef2c525bd8cd
-  - 57def2d7c093
   - a5937157062f
+  - 57def2d7c093
   - 156b60c1530f
+  - 04fa42777df9
+  - ef2c525bd8cd
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_alnqual
   owner: iuc
   revisions:
   - 791f73caa0c8
-  - 09d6e4693887
-  - 435b157bed6d
   - e61c9ac190ad
+  - 435b157bed6d
+  - 09d6e4693887
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_call
   owner: iuc
   revisions:
+  - 4805fe3d8fda
   - 074d44697036
+  - e1461b5c52a0
   - dfadc322b065
-  - 4805fe3d8fda
-  - 65432c3abf6c
   - 03627f24605f
-  - e1461b5c52a0
+  - 65432c3abf6c
   - 3b4b2121842f
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_filter
   owner: iuc
   revisions:
-  - 701d134358ad
-  - 9cb929f21cfa
   - 7dfca164d2e3
+  - 9cb929f21cfa
+  - 701d134358ad
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_indelqual
   owner: iuc
   revisions:
-  - 426d707dfc47
-  - f4473557ffc7
   - 971e07ca4456
+  - 426d707dfc47
   - c27549b9aa1f
+  - f4473557ffc7
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: lofreq_viterbi
   owner: iuc
   revisions:
-  - dbd9f2db9ed8
-  - aa35ee7f3ab2
   - cdaab621d454
+  - aa35ee7f3ab2
+  - dbd9f2db9ed8
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: naive_variant_caller
@@ -84,8 +84,8 @@ tools:
 - name: snippy
   owner: iuc
   revisions:
-  - fa016f1eea1a
   - 5bbf9eada9c2
+  - fa016f1eea1a
   - d220115f882b
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -122,10 +122,10 @@ tools:
 - name: tb_variant_filter
   owner: iuc
   revisions:
-  - ee4a90760848
   - 32f14a2723ec
   - e7aff4a85df5
   - 40f0591deda0
+  - ee4a90760848
   - 3b1e7c170b10
   tool_panel_section_label: Variant Calling
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/vcfbcf.yml b/usegalaxy.org.au/vcfbcf.yml
index aec39d1e0..f4f1c7662 100644
--- a/usegalaxy.org.au/vcfbcf.yml
+++ b/usegalaxy.org.au/vcfbcf.yml
@@ -2,48 +2,48 @@ tools:
 - name: bcftools_annotate
   owner: iuc
   revisions:
-  - 3f62d4939d54
-  - 6a88248893c4
-  - ebe5fc018e72
-  - 8a2e296c07ef
   - b7ea370b8f5d
+  - 8a2e296c07ef
   - 265fe0f9ea64
+  - 6a88248893c4
+  - ebe5fc018e72
+  - 3f62d4939d54
   - e075b1be5abb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_call
   owner: iuc
   revisions:
-  - 22637b1a55bf
+  - f0d44631365f
   - b03984136ce4
   - 544cb432072b
-  - 0fba2c15b40d
+  - 22637b1a55bf
   - 21687e35f066
-  - f0d44631365f
+  - 0fba2c15b40d
   - c37b684e7f4e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_cnv
   owner: iuc
   revisions:
-  - 8627b2b383b4
-  - 8ca3647c90fd
-  - 0238f68ad641
-  - bf1f4994f104
   - 6d35a3780bfd
   - 01d6b7d6365e
-  - 3a7084316a6e
+  - 0238f68ad641
+  - 8627b2b383b4
+  - 8ca3647c90fd
   - 8408bffd5616
+  - 3a7084316a6e
+  - bf1f4994f104
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_concat
   owner: iuc
   revisions:
-  - 6b6c992d3a14
-  - 03e0645395d2
   - d144af39073a
+  - 6b6c992d3a14
   - 81426b3cf18b
   - 9b5abbf50d23
+  - 03e0645395d2
   - f430a1ec7ee4
   - 08296952d12f
   tool_panel_section_label: VCF/BCF
@@ -51,153 +51,153 @@ tools:
 - name: bcftools_consensus
   owner: iuc
   revisions:
+  - 2363ef414c9b
   - 95c6f3f4c77f
+  - 147de996e34f
   - 1829900b5dcd
+  - d3081540d175
   - e522022137f6
   - d37e313a41be
-  - 2363ef414c9b
-  - 147de996e34f
-  - d3081540d175
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_from_vcf
   owner: iuc
   revisions:
-  - 1137ce8efc1e
-  - 09f37afb3621
-  - 348cd212dbad
   - 92c0aff8b53e
+  - 09f37afb3621
   - b14ff40958cb
   - cacc9970727a
+  - 348cd212dbad
   - 9b29129fb491
+  - 1137ce8efc1e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_convert_to_vcf
   owner: iuc
   revisions:
-  - 4935320a59a8
-  - 55c0e906c14c
-  - 367ba501b6eb
   - de68c11034f6
+  - 55c0e906c14c
   - 1f2183a23823
+  - 367ba501b6eb
   - ecc9192912b8
+  - 4935320a59a8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_csq
   owner: iuc
   revisions:
+  - f01b2c9506b9
   - ae68ceb4cca3
   - 7cbf3c66d4ad
-  - 039ea3f1dea9
-  - f01b2c9506b9
   - 64a8f7dae3ad
   - 6c790a091c7c
+  - 039ea3f1dea9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_filter
   owner: iuc
   revisions:
-  - 277719af4dd7
   - 963a3635b2e1
-  - 6ea7170a016d
-  - cdb7b4927742
   - e7452697afd9
   - 33bd9301568c
+  - 6ea7170a016d
   - 656a916779fe
+  - cdb7b4927742
+  - 277719af4dd7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_gtcheck
   owner: iuc
   revisions:
-  - 26d97cdd5410
-  - 3eac729e66c9
-  - a29a2f40b665
-  - 501bfb078342
   - b7f0f59baa7e
+  - a29a2f40b665
   - 5a321fab1fe4
+  - 501bfb078342
+  - 26d97cdd5410
   - a1213a0b7b66
+  - 3eac729e66c9
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_isec
   owner: iuc
   revisions:
+  - 768d04526638
   - 81e4014fa809
   - 5f27e814a119
-  - 63aabc920911
-  - c803c34361e0
-  - 97d19c008d15
   - 709dd8291b83
-  - 768d04526638
+  - c803c34361e0
+  - 63aabc920911
   - d7d1663559e9
+  - 97d19c008d15
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_merge
   owner: iuc
   revisions:
-  - 7ba36babba2d
-  - af163c712539
+  - 2215287d5cc9
   - b1eba148b35b
   - 85ee7e6c4204
-  - 86296490704e
   - b931e65638b8
-  - 2215287d5cc9
+  - 7ba36babba2d
+  - af163c712539
+  - 86296490704e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_mpileup
   owner: iuc
   revisions:
-  - 31ea13dfe5e6
-  - cf06b44624c7
+  - 03191140c66a
   - 5660b21a0dbd
+  - cf06b44624c7
   - 37757ffb4c5f
-  - 03191140c66a
+  - 31ea13dfe5e6
+  - ce9396ddcb2b
   - f506df85c652
   - 9c711df3258d
-  - ce9396ddcb2b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_norm
   owner: iuc
   revisions:
-  - 48291658fdf6
+  - a404f786a94c
   - 19905c025d2a
   - 6deb4d549bc9
-  - a404f786a94c
-  - 021693fdadaa
+  - 48291658fdf6
   - ebb2e12a6de1
+  - 021693fdadaa
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_counts
   owner: iuc
   revisions:
-  - 69d8b7567281
-  - c450406f722b
   - 5ad5d4243987
   - f7879f1e77f9
+  - 71c78e0eea52
   - 97e8145d7e30
+  - 69d8b7567281
+  - c450406f722b
   - be6b217710af
-  - 71c78e0eea52
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_dosage
   owner: iuc
   revisions:
-  - cc7f9a4e186b
-  - 0fe007201caf
+  - 2514e684f8a3
   - 52f9e4a660e3
+  - 89720ec3d58e
   - 79f7a1acc2cd
+  - cc7f9a4e186b
   - d31a2e310a52
-  - 89720ec3d58e
-  - 2514e684f8a3
+  - 0fe007201caf
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fill_an_ac
   owner: iuc
   revisions:
-  - 80e6e399ccd0
-  - 0a62420cb9cd
   - 1411bef27a75
   - 75ddd081f608
+  - 0a62420cb9cd
+  - 80e6e399ccd0
   - 026a989b7cee
   - 99f4a81a47be
   - 230e424bde67
@@ -206,13 +206,13 @@ tools:
 - name: bcftools_plugin_fill_tags
   owner: iuc
   revisions:
-  - 5808f77b2bb6
-  - e493702b19eb
   - c01be0ab9806
   - 444e6a756c35
-  - bca7ce81688f
+  - e493702b19eb
   - ba20340426fe
   - 5acfca5a76af
+  - 5808f77b2bb6
+  - bca7ce81688f
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_fixploidy
@@ -221,119 +221,119 @@ tools:
   - 4d236c696844
   - 12152af85697
   - 157ffcdd3fa7
-  - 7fe09ad6a939
-  - 68fec03a63b7
   - f2482aa4862e
+  - 7fe09ad6a939
   - d52b8947b269
+  - 68fec03a63b7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_impute_info
   owner: iuc
   revisions:
-  - 27e2611639a9
-  - 6f8e223f78f3
+  - 8dbce095986c
   - 0e5d11004815
+  - 6f8e223f78f3
   - cbe39e530cbf
   - 8f2fc0ab30fb
+  - 27e2611639a9
   - 29ba253e2e05
-  - 8dbce095986c
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_mendelian
   owner: iuc
   revisions:
-  - 9708e3086f32
-  - e0a856def0b0
   - a8630d4fbaf8
-  - a367a15c6de5
+  - 88bb477f45f7
   - 3ff5654b4e7d
+  - e0a856def0b0
   - af36eb5418fe
-  - 88bb477f45f7
+  - a367a15c6de5
+  - 9708e3086f32
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_missing2ref
   owner: iuc
   revisions:
   - 6ce175385dd9
-  - 96d0145c041a
+  - 31c096c6b156
+  - 03e30f06f15f
+  - 5c9729d54721
   - 2f4eef1f0d22
   - 4ed46189d6c6
-  - 5c9729d54721
-  - 03e30f06f15f
-  - 31c096c6b156
+  - 96d0145c041a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_setgt
   owner: iuc
   revisions:
-  - 40daf124be88
   - 11af7fce71cf
+  - 46eb13bc2c73
   - 2c4941386820
-  - 262bba5b90ef
-  - a1aad8b559c6
   - 09f5e45a8212
-  - 46eb13bc2c73
+  - a1aad8b559c6
+  - 40daf124be88
+  - 262bba5b90ef
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_plugin_tag2tag
   owner: iuc
   revisions:
+  - 12038f59c0f4
   - 743cd1472aeb
-  - 0594ea1417c8
-  - 6cbb9c47795c
-  - 8cb121b6a1d2
   - 4b796b58938b
   - f272b8ba0983
-  - 12038f59c0f4
+  - 8cb121b6a1d2
+  - 6cbb9c47795c
+  - 0594ea1417c8
   - 882b2e649602
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query_list_samples
   owner: iuc
   revisions:
-  - cced6715f926
+  - adee7e8b746f
+  - eccb508bb678
   - 8c3ff4ef1190
   - 18cf9de1cf73
-  - adee7e8b746f
-  - 238f78e38a8b
   - dba06328556a
-  - eccb508bb678
+  - 238f78e38a8b
+  - cced6715f926
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_query
   owner: iuc
   revisions:
-  - 9f36041495a3
   - f64e7ca2efd2
+  - 9f36041495a3
   - e53501abf992
-  - a850902cac64
-  - 3ce32adc55b2
-  - e0ad88dec40d
   - c9935c9e8a24
+  - e0ad88dec40d
+  - 3ce32adc55b2
+  - a850902cac64
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_reheader
   owner: iuc
   revisions:
+  - d43eb39b989e
+  - fd3539749127
+  - 4db0695a6fc7
   - d68c43202172
   - 8057cf55fa41
-  - d43eb39b989e
   - b7be725976b6
   - 79489d5685dd
-  - fd3539749127
-  - 4db0695a6fc7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_roh
   owner: iuc
   revisions:
-  - 1ccf0e7fb4f6
   - 5296d26b0373
-  - b0d39ef600a7
-  - 58091e1be01b
+  - 1ccf0e7fb4f6
   - 6a636d58dfc2
-  - 78cd8b69da4c
   - bdc67eeb0bc9
+  - 58091e1be01b
+  - 78cd8b69da4c
+  - b0d39ef600a7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_stats
@@ -341,23 +341,23 @@ tools:
   revisions:
   - e8af591435d1
   - b17394940c7a
-  - '388983871932'
+  - 4d3ce9dc1525
   - a2f8dc22d7c0
   - b641062a2587
-  - 4d3ce9dc1525
+  - '388983871932'
   - baa8823f8073
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bcftools_view
   owner: iuc
   revisions:
-  - 59fa8742285e
-  - 3a233c8eb814
-  - abc3ced31cd1
   - 3ca3de4e5291
-  - d1f8f55f564d
-  - e6b5cbbf449b
+  - abc3ced31cd1
+  - 3a233c8eb814
+  - 59fa8742285e
   - 38d75661c235
+  - e6b5cbbf449b
+  - d1f8f55f564d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcf2tsv
@@ -370,36 +370,36 @@ tools:
 - name: vcfaddinfo
   owner: devteam
   revisions:
-  - afc0ba768690
   - 6ea73d6151ec
+  - afc0ba768690
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfallelicprimitives
   owner: devteam
   revisions:
-  - 57a16b310fe8
   - a8a4f94aa321
+  - 57a16b310fe8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotate
   owner: devteam
   revisions:
-  - 6faa2c4c71d2
   - 01e0321aca98
+  - 6faa2c4c71d2
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfannotategenotypes
   owner: devteam
   revisions:
-  - 84959112d9a6
   - 70bc6ced57f7
+  - 84959112d9a6
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbedintersect
   owner: devteam
   revisions:
-  - 9edfe5145ba8
   - aea8e90ad788
+  - 9edfe5145ba8
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfbreakcreatemulti
@@ -419,8 +419,8 @@ tools:
 - name: vcfcombine
   owner: devteam
   revisions:
-  - 1f0ba67cc85a
   - 53edb91ed051
+  - 1f0ba67cc85a
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfcommonsamples
@@ -433,44 +433,44 @@ tools:
 - name: vcfdistance
   owner: devteam
   revisions:
-  - 5822b40f3037
   - 48e458c721b3
+  - 5822b40f3037
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffilter
   owner: devteam
   revisions:
+  - 6b935ab36d7b
   - eae7c08ebb6f
   - fa24bf0598f4
-  - 6b935ab36d7b
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcffixup
   owner: devteam
   revisions:
-  - 11f62f071125
   - fc5a64fdd5b2
+  - 11f62f071125
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfflatten
   owner: devteam
   revisions:
-  - f285aa6bdcfb
   - b24e368ae7b1
+  - f285aa6bdcfb
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfgeno2haplo
   owner: devteam
   revisions:
-  - a3dea556218d
   - b890055e07bd
+  - a3dea556218d
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfgenotypes
   owner: devteam
   revisions:
-  - a60ae8af21a1
   - f5653ed90dfd
+  - a60ae8af21a1
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfhethom
@@ -483,8 +483,8 @@ tools:
 - name: vcfleftalign
   owner: devteam
   revisions:
-  - 29f9b782727e
   - d2406f98a782
+  - 29f9b782727e
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfprimers
@@ -497,8 +497,8 @@ tools:
 - name: vcfrandomsample
   owner: devteam
   revisions:
-  - 6257ee3b50d3
   - 12b570dd0bc5
+  - 6257ee3b50d3
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: vcfselectsamples
@@ -524,7 +524,7 @@ tools:
 - name: vcfvcfintersect
   owner: devteam
   revisions:
-  - 6f6bf10618d7
   - 166c4f50525f
+  - 6f6bf10618d7
   tool_panel_section_label: VCF/BCF
   tool_shed_url: toolshed.g2.bx.psu.edu
diff --git a/usegalaxy.org.au/viral_tools.yml b/usegalaxy.org.au/viral_tools.yml
index 06370d956..15250eab7 100644
--- a/usegalaxy.org.au/viral_tools.yml
+++ b/usegalaxy.org.au/viral_tools.yml
@@ -2,7 +2,7 @@ tools:
 - name: quasitools
   owner: nml
   revisions:
-  - 18aad692772a
   - 9def47f3c1e4
+  - 18aad692772a
   tool_panel_section_label: Viral Tools
   tool_shed_url: toolshed.g2.bx.psu.edu