From 3349e6c2d0a25c81e8eab61c29d3e5bca1b1c989 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Thu, 2 Nov 2023 16:25:01 +1100 Subject: [PATCH] [FORCE] alphafold2, arriba, bwa_mem2, dada2_assigntaxonomyaddspecies, deeptools_plot_correlation, funannotate_annotate, funannotate_compare, funannotate_predict, featurecounts, ncbi_blast_plus, rgrnastar, rna_starsolo, sortmerna from update_170 --- requests/alphafold2@e4a053d67e24.yml | 7 +++++++ requests/arriba@01ccd366690d.yml | 7 +++++++ requests/bwa_mem2@bfaa0d22c2e4.yml | 7 +++++++ requests/dada2_assigntaxonomyaddspecies@7c2100246a2f.yml | 7 +++++++ requests/deeptools_plot_correlation@bad3ca889618.yml | 7 +++++++ requests/featurecounts@f9d49f5cb597.yml | 7 +++++++ requests/funannotate_annotate@b6b5cd37f2a2.yml | 7 +++++++ requests/funannotate_compare@5a5ae61da69c.yml | 7 +++++++ requests/funannotate_predict@d6c7106b7b2e.yml | 7 +++++++ requests/ncbi_blast_plus@a52d2d93e595.yml | 7 +++++++ requests/rgrnastar@79de45b5069b.yml | 7 +++++++ requests/rna_starsolo@5ef7ec16b04f.yml | 7 +++++++ requests/sortmerna@10b84b577117.yml | 7 +++++++ 13 files changed, 91 insertions(+) create mode 100644 requests/alphafold2@e4a053d67e24.yml create mode 100644 requests/arriba@01ccd366690d.yml create mode 100644 requests/bwa_mem2@bfaa0d22c2e4.yml create mode 100644 requests/dada2_assigntaxonomyaddspecies@7c2100246a2f.yml create mode 100644 requests/deeptools_plot_correlation@bad3ca889618.yml create mode 100644 requests/featurecounts@f9d49f5cb597.yml create mode 100644 requests/funannotate_annotate@b6b5cd37f2a2.yml create mode 100644 requests/funannotate_compare@5a5ae61da69c.yml create mode 100644 requests/funannotate_predict@d6c7106b7b2e.yml create mode 100644 requests/ncbi_blast_plus@a52d2d93e595.yml create mode 100644 requests/rgrnastar@79de45b5069b.yml create mode 100644 requests/rna_starsolo@5ef7ec16b04f.yml create mode 100644 requests/sortmerna@10b84b577117.yml diff --git a/requests/alphafold2@e4a053d67e24.yml b/requests/alphafold2@e4a053d67e24.yml new file mode 100644 index 000000000..0f62a365b --- /dev/null +++ b/requests/alphafold2@e4a053d67e24.yml @@ -0,0 +1,7 @@ +tools: +- name: alphafold2 + owner: galaxy-australia + revisions: + - e4a053d67e24 + tool_panel_section_label: Proteomic AI + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/arriba@01ccd366690d.yml b/requests/arriba@01ccd366690d.yml new file mode 100644 index 000000000..7814df313 --- /dev/null +++ b/requests/arriba@01ccd366690d.yml @@ -0,0 +1,7 @@ +tools: +- name: arriba + owner: iuc + revisions: + - 01ccd366690d + tool_panel_section_label: RNA-seq + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/bwa_mem2@bfaa0d22c2e4.yml b/requests/bwa_mem2@bfaa0d22c2e4.yml new file mode 100644 index 000000000..4d2a128f5 --- /dev/null +++ b/requests/bwa_mem2@bfaa0d22c2e4.yml @@ -0,0 +1,7 @@ +tools: +- name: bwa_mem2 + owner: iuc + revisions: + - bfaa0d22c2e4 + tool_panel_section_label: Mapping + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/dada2_assigntaxonomyaddspecies@7c2100246a2f.yml b/requests/dada2_assigntaxonomyaddspecies@7c2100246a2f.yml new file mode 100644 index 000000000..2f19481d7 --- /dev/null +++ b/requests/dada2_assigntaxonomyaddspecies@7c2100246a2f.yml @@ -0,0 +1,7 @@ +tools: +- name: dada2_assigntaxonomyaddspecies + owner: iuc + revisions: + - 7c2100246a2f + tool_panel_section_label: Metagenomic Analysis + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/deeptools_plot_correlation@bad3ca889618.yml b/requests/deeptools_plot_correlation@bad3ca889618.yml new file mode 100644 index 000000000..7ce7e7341 --- /dev/null +++ b/requests/deeptools_plot_correlation@bad3ca889618.yml @@ -0,0 +1,7 @@ +tools: +- name: deeptools_plot_correlation + owner: bgruening + revisions: + - bad3ca889618 + tool_panel_section_label: DeepTools + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/featurecounts@f9d49f5cb597.yml b/requests/featurecounts@f9d49f5cb597.yml new file mode 100644 index 000000000..8b81b4081 --- /dev/null +++ b/requests/featurecounts@f9d49f5cb597.yml @@ -0,0 +1,7 @@ +tools: +- name: featurecounts + owner: iuc + revisions: + - f9d49f5cb597 + tool_panel_section_label: RNA-seq + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/funannotate_annotate@b6b5cd37f2a2.yml b/requests/funannotate_annotate@b6b5cd37f2a2.yml new file mode 100644 index 000000000..e324f6651 --- /dev/null +++ b/requests/funannotate_annotate@b6b5cd37f2a2.yml @@ -0,0 +1,7 @@ +tools: +- name: funannotate_annotate + owner: iuc + revisions: + - b6b5cd37f2a2 + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/funannotate_compare@5a5ae61da69c.yml b/requests/funannotate_compare@5a5ae61da69c.yml new file mode 100644 index 000000000..b1f47e5b3 --- /dev/null +++ b/requests/funannotate_compare@5a5ae61da69c.yml @@ -0,0 +1,7 @@ +tools: +- name: funannotate_compare + owner: iuc + revisions: + - 5a5ae61da69c + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/funannotate_predict@d6c7106b7b2e.yml b/requests/funannotate_predict@d6c7106b7b2e.yml new file mode 100644 index 000000000..1c8c89f3c --- /dev/null +++ b/requests/funannotate_predict@d6c7106b7b2e.yml @@ -0,0 +1,7 @@ +tools: +- name: funannotate_predict + owner: iuc + revisions: + - d6c7106b7b2e + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/ncbi_blast_plus@a52d2d93e595.yml b/requests/ncbi_blast_plus@a52d2d93e595.yml new file mode 100644 index 000000000..e66b554f9 --- /dev/null +++ b/requests/ncbi_blast_plus@a52d2d93e595.yml @@ -0,0 +1,7 @@ +tools: +- name: ncbi_blast_plus + owner: devteam + revisions: + - a52d2d93e595 + tool_panel_section_label: Blast + + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/rgrnastar@79de45b5069b.yml b/requests/rgrnastar@79de45b5069b.yml new file mode 100644 index 000000000..5ba3387c2 --- /dev/null +++ b/requests/rgrnastar@79de45b5069b.yml @@ -0,0 +1,7 @@ +tools: +- name: rgrnastar + owner: iuc + revisions: + - 79de45b5069b + tool_panel_section_label: RNA-seq + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/rna_starsolo@5ef7ec16b04f.yml b/requests/rna_starsolo@5ef7ec16b04f.yml new file mode 100644 index 000000000..dc9203b62 --- /dev/null +++ b/requests/rna_starsolo@5ef7ec16b04f.yml @@ -0,0 +1,7 @@ +tools: +- name: rna_starsolo + owner: iuc + revisions: + - 5ef7ec16b04f + tool_panel_section_label: Mapping + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/sortmerna@10b84b577117.yml b/requests/sortmerna@10b84b577117.yml new file mode 100644 index 000000000..56e123d3a --- /dev/null +++ b/requests/sortmerna@10b84b577117.yml @@ -0,0 +1,7 @@ +tools: +- name: sortmerna + owner: rnateam + revisions: + - 10b84b577117 + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu