From d43a647b6bbb6088f156a478ced704e5f7671a24 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Mon, 29 Jan 2024 12:14:43 +1100 Subject: [PATCH] Install some IUC tools (part 1) --- requests/eu_iuc_tools_suite_filtered.yml | 133 +++++++++++++++++++++++ 1 file changed, 133 insertions(+) create mode 100644 requests/eu_iuc_tools_suite_filtered.yml diff --git a/requests/eu_iuc_tools_suite_filtered.yml b/requests/eu_iuc_tools_suite_filtered.yml new file mode 100644 index 000000000..61f7c0077 --- /dev/null +++ b/requests/eu_iuc_tools_suite_filtered.yml @@ -0,0 +1,133 @@ +tools: +- name: transit_hmm + owner: iuc + tool_panel_section_label: Annotation +- name: transit_resampling + owner: iuc + tool_panel_section_label: Annotation +- name: transit_tn5gaps + owner: iuc + tool_panel_section_label: Annotation +- name: samtools_bam_to_cram + owner: iuc + tool_panel_section_label: Convert Formats +- name: ucsc_twobittofa + owner: iuc + tool_panel_section_label: Convert Formats +- name: ucsc_wigtobigwig + owner: iuc + tool_panel_section_label: Convert Formats +- name: ucsc_fatovcf + owner: iuc + tool_panel_section_label: Convert Formats +- name: umi_tools_group + owner: iuc + tool_panel_section_label: FASTA/FASTQ +- name: umi_tools_whitelist + owner: iuc + tool_panel_section_label: FASTA/FASTQ +- name: ggplot2_histogram + owner: iuc + tool_panel_section_label: Graph/Display Data +- name: ggplot2_pca + owner: iuc + tool_panel_section_label: Graph/Display Data +- name: ggplot2_violin + owner: iuc + tool_panel_section_label: Graph/Display Data +- name: humann_associate + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: humann_barplot + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: humann_join_tables + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: humann_reduce_table + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: humann_rna_dna_norm + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: humann_split_table + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: humann_strain_profiler + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: kraken_taxonomy_report + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: krakentools_alpha_diversity + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: krakentools_beta_diversity + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: krakentools_combine_kreports + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: krakentools_kreport2mpa + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: medaka_variant_pipeline + owner: iuc + tool_panel_section_label: Nanopore +- name: qualimap_counts + owner: iuc + tool_panel_section_label: RNA-seq +- name: trinity_stats + owner: iuc + tool_panel_section_label: RNA-seq +- name: trinity_super_transcripts + owner: iuc + tool_panel_section_label: RNA-seq +- name: bamtools_split_mapped + owner: iuc + tool_panel_section_label: SAM/BAM +- name: bamtools_split_paired + owner: iuc + tool_panel_section_label: SAM/BAM +- name: bamtools_split_ref + owner: iuc + tool_panel_section_label: SAM/BAM +- name: bamtools_split_tag + owner: iuc + tool_panel_section_label: SAM/BAM +- name: samtools_ampliconclip + owner: iuc + tool_panel_section_label: SAM/BAM +- name: samtools_coverage + owner: iuc + tool_panel_section_label: SAM/BAM +- name: samtools_depth + owner: iuc + tool_panel_section_label: SAM/BAM +- name: samtools_fixmate + owner: iuc + tool_panel_section_label: SAM/BAM +- name: samtools_markdup + owner: iuc + tool_panel_section_label: SAM/BAM +- name: anndata_export + owner: iuc + tool_panel_section_label: Single-cell +- name: raceid_filtnormconf + owner: iuc + tool_panel_section_label: Single-cell +- name: scater_normalize + owner: iuc + tool_panel_section_label: Single-cell +- name: scater_plot_exprs_freq + owner: iuc + tool_panel_section_label: Single-cell +- name: scater_plot_tsne + owner: iuc + tool_panel_section_label: Single-cell +- name: varscan_copynumber + owner: iuc + tool_panel_section_label: Variant Calling +- name: varscan_mpileup + owner: iuc + tool_panel_section_label: Variant Calling