-
Notifications
You must be signed in to change notification settings - Fork 0
/
index-streetscience.html
259 lines (198 loc) · 10.3 KB
/
index-streetscience.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
<!DOCTYPE html>
<html lang="en">
<head>
<title>Galaxy Australia</title>
<meta property="og:title" content="" />
<meta property="og:description" content="" />
<meta property="og:image" content="/assets/media/galaxy-eu-logo.512.png" />
<meta name="description" content="The Australian Galaxy Instance">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<link rel="stylesheet" href="/assets/css/bootstrap.min.css">
<link rel="stylesheet" href="/assets/css/main.css">
<link rel="canonical" href="https://usegalaxy-au.github.io/index-streetscience.html">
<link rel="shortcut icon" href="/assets/media/galaxy-eu-logo.64.png" type="image/x-icon" />
<link rel="alternate" type="application/rss+xml" title="Galaxy Australia" href="/feed.xml">
<link href="/assets/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-wvfXpqpZZVQGK6TAh5PVlGOfQNHSoD2xbE+QkPxCAFlNEevoEH3Sl0sibVcOQVnN" crossorigin="anonymous">
<script src="/assets/js/jquery-3.2.1.slim.min.js" integrity="sha256-k2WSCIexGzOj3Euiig+TlR8gA0EmPjuc79OEeY5L45g=" crossorigin="anonymous"></script>
<script src="/assets/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
</head>
<body>
<div id="wrap">
<div id="main">
<div class="container" id="maincontainer">
<div class="home">
<h1 id="street-science-community">Street Science Community</h1>
<h3 id="bring-science-to-the-street">Bring science to the “street”</h3>
<p>Welcome to a <strong>Galaxy dedicated for the <a href="https://streetscience.community/" target="_blank">Street Science Community</a></strong>.</p>
<h2 id="get-started">Get started</h2>
<p>Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take <a href="https://metagenomics.usegalaxy.eu/tours/core.galaxy_ui" target="_blank">a guided tour</a> through Galaxy’s user interface.</p>
<h2 id="what-is-the-street-science-community">What is the Street Science community?</h2>
<p>In the Street Science community, we want to make science tangible & accessible by bringing it to the “street” via open science workshops. Our first project is <a href="https://streetscience.community/projects/beerdecoded/" target="_blank">BeerDEcoded</a>, sequencing the DNA of beer.</p>
<p>Beer is alive! It contains DNA that comes from its ingredients (hops, malts, yeast) and some hundred microbes. There are 1,000+ yeasts used for brewing and 200+ hop varieties, each one bearing a different DNA and contributing to differentiate its properties.</p>
<p>We use the beer to sensibilize the public to molecular biology and genomic related research, DNA sequencing and data analysis and the challenges and possibilities that genomics brings to our society.</p>
<h2>Our Data Policy</h2>
<style>
th, td {
border-bottom: 1px solid #ddd;
padding: 10px;
}
th {
background-color: #f2f2f2;
}
</style>
<p><strong>Galaxy Australia</strong> is designed for data analysis and not for
long term storage of data.</p>
<br />
<p>Use Galaxy Australia to host your input data only for the period required for
analysis. Also, remember to export/download your analysed data as this also
will not be stored beyond the limits set out below.</p>
<p>It is <u>your responsibility</u> as a user of the system to manage your own data
and routinely remove both your input and output data from this community system
to enable capacity for other users. Any data that is not removed by you within
a defined time period (see below) will be automatically and permanently deleted.
</p>
<p>Galaxy Australia maintains a collection of frequently used reference genomes
and annotation datasets. The inclusion of additional reference genomes and/or
annotation data on the system for community use can be <a href="https://docs.google.com/forms/d/e/1FAIpQLSdXuarvkzFA5kRqoCfO8uiUGAB0PplfR4yvAfpCPSpdMcehmA/viewform">
requested</a>. Galaxy Australia's hosting of all reference and annotation data
does not count to your quota and it is the best way to access
reference/annotation data.</p>
<h3>Data storage quotas and retention periods</h3><br />
<center>
<table>
<tr>
<th></th>
<th>Storage quota</th>
<th>Data retention period</th>
</tr>
<tr>
<td><strong>Registered Australian researchers</strong></td><td>600GB</td><td>1 year (52 weeks)</td>
</tr>
<tr>
<td><strong>Other registered users</strong></td><td>100GB</td><td>1 year (52 weeks)</td>
</tr>
<tr>
<td><strong>Unregistered users</strong></td><td>5GB</td><td>NA</td>
</tr>
</table>
</center>
<h3>Registered Users</h3>
<ul>
<li><u>Registered Australian Researchers</u> are defined by registration
Email from:
<ul>
<li>@domain.edu.au</li>
<li>@domain.org.au</li>
<li>@domain.edu - only in the case of known Australian Universities
not on the .au domain</li>
</ul>
</li>
<li><u>Other Registered Users</u> are defined as any registration Email
from all other @domains</li>
<li>Please contact us ([email protected]) if your institution does not
conform to this rule but you understand it should be defined as
performing publicly funded Australian research</li>
</ul>
<p>Registered users from Australian publicly funded research organisations have
a 600GB data storage quota. Other registered users have a 100GB quota. An
increased data storage quota can be <a href="https://docs.google.com/forms/d/e/1FAIpQLSeiw6ajmkezLCwbXc3OFQEU3Ai9hGnBd967u9YbQ8ANPgvatA/viewform">
requested</a> for a limited time period in special cases.</p>
<p>Registered User's data (i.e. datasets, histories) will be available on the
system for 1 year (52 weeks) from the point of upload or creation. Within this period,
any data marked by a Registered User as "deleted" will be permanently removed
within 5 days. If a registered user "purges" the dataset, it will be removed
immediately and permanently.</p>
<h3>Unregistered Users</h3>
<p>Processed data will only be accessible during one browser session, using a
browser cookie to identify an Unregistered User's data. This cookie is not used
for any other purposes (e.g. tracking or analytics.)</p>
<h3>What does it mean when I go over quota?</h3>
<p>You data and histories are still accessible, but you not be able to run new
jobs or import more data. If you know in advance then take advantage of
<a href="https://docs.google.com/forms/d/e/1FAIpQLSeiw6ajmkezLCwbXc3OFQEU3Ai9hGnBd967u9YbQ8ANPgvatA/viewform">
requesting</a> more analysis storage or downloading and deleting old, unwanted data.</p>
<style>
.column {
float: left;
width: 25%;
}
.big_column {
float: left;
width: 100%
}
/* Clear floats after the columns */
.row:after {
content: "";
display: table;
clear: both;
}
/* Responsive layout - makes a two column-layout instead of four columns */
@media screen and (max-width: 1200px) {
.column {
width: 50%;
}
}
/* Responsive layout - makes the two columns stack on top of each other instead of next to each other */
@media screen and (max-width: 600px) {
.column {
width: 100%;
}
}
</style>
<div class="row" width="90%">
<div class="big_column">
<!--<iframe width="100%" height="200px" src="https://stats.genome.edu.au/d-solo/-D4mtTAik/for_embedding?refresh=10s&orgId=1&panelId=2" frameborder="0" ></iframe> -->
<iframe src="https://stats.usegalaxy.org.au/d-solo/-D4mtTAik/for_embedding?orgId=1&refresh=10s&panelId=2" width="100%" height="200px" frameborder="0"></iframe>
</div>
</div>
<center>
<div class="row" width="90%">
<div class="column">
<iframe src="https://stats.usegalaxy.org.au/d-solo/-D4mtTAik/for_embedding?orgId=1&refresh=1d&panelId=19" width="95%" height="110px" frameborder="0"></iframe>
</div>
<div class="column">
<iframe src="https://stats.usegalaxy.org.au/d-solo/-D4mtTAik/for_embedding?orgId=1&refresh=1d&panelId=21" width="95%" height="110px" frameborder="0"></iframe>
</div>
<div class="column">
<iframe src="https://stats.usegalaxy.org.au/d-solo/-D4mtTAik/for_embedding?orgId=1&refresh=1d&panelId=23" width="95%" height="110px" frameborder="0"></iframe>
</div>
<div class="column">
<iframe src="https://stats.usegalaxy.org.au/d-solo/-D4mtTAik/for_embedding?orgId=1&refresh=1d&panelId=25" width="95%" height="110px" frameborder="0"></iframe>
</div>
</div>
</center>
<div class="row">
<section class="section-content">
<div class="col-md-12">
</div>
</section>
</div>
</div>
</div>
</div>
</div>
<footer class="navbar-default">
<div class="container">
<div class="row">
<div class="col-lg-12" style="text-align:center">
<p>UseGalaxy.org.au is maintained largely by the <a href="/people">Australian Galaxy Team</a> including staff from QCIF, UQ-RCC and Melbourne Bioinformatics.
All content on this site is available under <a href="https://creativecommons.org/share-your-work/public-domain/cc0/" target="_blank">CC0-1.0</a>, unless otherwise specified.
Galaxy Australia is currently running Galaxy version 21.09 (September 2021)</p>
</div>
</div>
<div class="row">
<div class="col-lg-12" style="text-align:center">
<ul class="contact-info">
<li><i class="fa fa-envelope"></i><a href="mailto:[email protected]">[email protected]</a></li>
<li><i class="fa fa-github"></i><a href="https://github.com/usegalaxy-au" target="_blank">usegalaxy-au</a></li>
<li><i class="fa fa-twitter"></i><a href="https://twitter.com/galaxyaustralia" target="_blank">galaxyaustralia</a></li>
<!-- <li><i class="fa fa-rss"></i>Subscribe <a href="/feed.xml">via RSS (UseGalaxy.eu Feed)</a></li> -->
</ul>
</div>
</div>
</div>
</footer>
</body>
</html>