From ccd9e73678ad9b9187003110055a11f40739ac27 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Thu, 5 May 2022 16:23:44 +0200 Subject: [PATCH 1/3] Update gxconfig.yml --- group_vars/gxconfig.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/group_vars/gxconfig.yml b/group_vars/gxconfig.yml index 2ac6ff437..79c4d8a1f 100644 --- a/group_vars/gxconfig.yml +++ b/group_vars/gxconfig.yml @@ -1923,7 +1923,7 @@ base_app_main: &BASE_APP_MAIN # object store as part of the job and dynamic output discovery (e.g. # discovered datasets , unpopulated collections, # etc) happens as part of the job. - #metadata_strategy: directory + metadata_strategy: 'extended' # Although it is fairly reliable, setting metadata can occasionally # fail. In these instances, you can choose to retry setting it From cffc6fa5c3c909c1c0231d9cdd6fc8178ba62c1d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= <43052541+kysrpex@users.noreply.github.com> Date: Wed, 19 Jul 2023 16:29:39 +0200 Subject: [PATCH 2/3] Uncomment metadata_strategy setting in gxconfig.yml --- group_vars/gxconfig.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/group_vars/gxconfig.yml b/group_vars/gxconfig.yml index dfe1b941c..cb8ed2872 100644 --- a/group_vars/gxconfig.yml +++ b/group_vars/gxconfig.yml @@ -1954,7 +1954,7 @@ base_app_main: &BASE_APP_MAIN # , unpopulated collections, etc) happens as part # of the job. In `directory_celery` and `extended_celery` metadata # will be set within a celery task. - #metadata_strategy: extended + metadata_strategy: extended # Although it is fairly reliable, setting metadata can occasionally # fail. In these instances, you can choose to retry setting it From c8097b70ccb5c52a516712494d5e1b4dd109a8ba Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Wed, 19 Jul 2023 17:09:23 +0200 Subject: [PATCH 3/3] Remove metadata_strategy setting from tool_defaults.yml --- files/galaxy/tpv/tool_defaults.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/files/galaxy/tpv/tool_defaults.yml b/files/galaxy/tpv/tool_defaults.yml index 8e12981d5..68226e11d 100644 --- a/files/galaxy/tpv/tool_defaults.yml +++ b/files/galaxy/tpv/tool_defaults.yml @@ -10,7 +10,6 @@ tools: env: GALAXY_MEMORY_MB: "{int(mem * 1024)}" # set 5/2023 might be moved to runner or tool wrappers, related to Galaxy issue 15952 params: - metadata_strategy: 'extended' tmp_dir: true request_cpus: "{cores}" request_memory: "{mem}G"