From 06b70b587f7755c844359cf2771a27594276025f Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Tue, 27 Jun 2023 05:51:17 +0200 Subject: [PATCH] Autoupdate tool blog post --- _posts/2023-06-27-tool-update.md | 61 ++++++++++++++++++++++++++++++++ 1 file changed, 61 insertions(+) create mode 100644 _posts/2023-06-27-tool-update.md diff --git a/_posts/2023-06-27-tool-update.md b/_posts/2023-06-27-tool-update.md new file mode 100644 index 000000000..71f478efc --- /dev/null +++ b/_posts/2023-06-27-tool-update.md @@ -0,0 +1,61 @@ +--- +site: freiburg +tags: [tools] +title: UseGalaxy.eu Tool Updates for 2023-06-27 +supporters: +- denbi +- elixir +--- + +On 2023-06-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #392](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#392/) + + +## QIIME 2 + +- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) + +## Get Data + +- sra_tools was updated to [6ea73833cf67](https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/6ea73833cf67) + +## Proteomics + +- maxquant was updated to [8934bc76bb52](https://toolshed.g2.bx.psu.edu/view/galaxyp/maxquant/8934bc76bb52) +- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) +- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) +- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) +- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) +- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) + +## Machine Learning + +- keras_batch_models was updated to [62b85c8ad8fa](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_batch_models/62b85c8ad8fa) + +## Metagenomic Analysis + +- krakentools_alpha_diversity was updated to [bab112ba9d62](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_alpha_diversity/bab112ba9d62) +- krakentools_beta_diversity was updated to [c254d75b8b67](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_beta_diversity/c254d75b8b67) +- krakentools_combine_kreports was updated to [073c867c5244](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_combine_kreports/073c867c5244) +- krakentools_extract_kraken_reads was updated to [f329328da134](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_extract_kraken_reads/f329328da134) +- krakentools_kreport2krona was updated to [2deaada69b14](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_kreport2krona/2deaada69b14) +- krakentools_kreport2mpa was updated to [bb96a1e6583d](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_kreport2mpa/bb96a1e6583d) + +## None + +- data_manager_bakta was updated to [3e73c97f025d](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_bakta/3e73c97f025d) +- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) + +## RNA Analysis + +- salmon was updated to [15cd64d7c58b](https://toolshed.g2.bx.psu.edu/view/bgruening/salmon/15cd64d7c58b) +- salmonquantmerge was updated to [dba18bf7528f](https://toolshed.g2.bx.psu.edu/view/bgruening/salmonquantmerge/dba18bf7528f) + +## Single-cell + +- alevin was updated to [e32b215b7c04](https://toolshed.g2.bx.psu.edu/view/bgruening/alevin/e32b215b7c04) + +## Variant Calling + +- artic_guppyplex was updated to [00e20a06ff1e](https://toolshed.g2.bx.psu.edu/view/iuc/artic_guppyplex/00e20a06ff1e) +- artic_minion was updated to [468b90c41cde](https://toolshed.g2.bx.psu.edu/view/iuc/artic_minion/468b90c41cde) +