From 2484ce1441fa8f1f9929a750e884bc92ad36a159 Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Sun, 16 Jun 2024 17:08:22 +0200 Subject: [PATCH] Autoupdate tool blog post --- _posts/2024-06-16-tool-update.md | 176 +++++++++++++++++++++++++++++++ 1 file changed, 176 insertions(+) create mode 100644 _posts/2024-06-16-tool-update.md diff --git a/_posts/2024-06-16-tool-update.md b/_posts/2024-06-16-tool-update.md new file mode 100644 index 00000000..5e39f96e --- /dev/null +++ b/_posts/2024-06-16-tool-update.md @@ -0,0 +1,176 @@ +--- +site: freiburg +tags: [tools] +title: UseGalaxy.eu Tool Updates for 2024-06-16 +supporters: +- denbi +- elixir +--- + +On 2024-06-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #454](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#454/) + + +## ChemicalToolBox + +- rem_complex was updated to [60db8070a5c3](https://toolshed.g2.bx.psu.edu/view/recetox/rem_complex/60db8070a5c3) + +## QIIME 2 + +- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) +- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) + +## Proteomics + +- openms_accuratemasssearch was updated to [31e674c86840](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_accuratemasssearch/31e674c86840) +- openms_assaygeneratormetabo was updated to [f3ec820189ca](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_assaygeneratormetabo/f3ec820189ca) +- openms_baselinefilter was updated to [84bd73e60367](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_baselinefilter/84bd73e60367) +- openms_clustermasstraces was updated to [3350a9c0631a](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_clustermasstraces/3350a9c0631a) +- openms_clustermasstracesbyprecursor was updated to [f0c018228cec](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_clustermasstracesbyprecursor/f0c018228cec) +- openms_cometadapter was updated to [df0c77da6c87](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_cometadapter/df0c77da6c87) +- openms_consensusid was updated to [91da6dd00bbc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_consensusid/91da6dd00bbc) +- openms_consensusmapnormalizer was updated to [cb772fb66a49](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_consensusmapnormalizer/cb772fb66a49) +- openms_cvinspector was updated to [c8e5389abfc5](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_cvinspector/c8e5389abfc5) +- openms_databasefilter was updated to [2f7a8b58314e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_databasefilter/2f7a8b58314e) +- openms_decoydatabase was updated to [06cca574e337](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_decoydatabase/06cca574e337) +- openms_demeanderize was updated to [17547aceaf40](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_demeanderize/17547aceaf40) +- openms_digestor was updated to [74db964d4818](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_digestor/74db964d4818) +- openms_dtaextractor was updated to [78024781d209](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_dtaextractor/78024781d209) +- openms_eicextractor was updated to [c0f39306c687](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_eicextractor/c0f39306c687) +- openms_epifany was updated to [e8c52c1d6f98](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_epifany/e8c52c1d6f98) +- openms_erpairfinder was updated to [3d043a92c582](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_erpairfinder/3d043a92c582) +- openms_externalcalibration was updated to [8bdbd9b42f3e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_externalcalibration/8bdbd9b42f3e) +- openms_falsediscoveryrate was updated to [4138acdeedfb](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_falsediscoveryrate/4138acdeedfb) +- openms_featurefindercentroided was updated to [d0c5325cb998](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefindercentroided/d0c5325cb998) +- openms_featurefinderidentification was updated to [65bdfab68571](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefinderidentification/65bdfab68571) +- openms_featurefinderisotopewavelet was updated to [1a82cbde281d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefinderisotopewavelet/1a82cbde281d) +- openms_featurefindermetabo was updated to [a49dde5a836e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefindermetabo/a49dde5a836e) +- openms_featurefindermetaboident was updated to [a93b05cf3a38](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefindermetaboident/a93b05cf3a38) +- openms_featurefindermrm was updated to [ccc041d26ee1](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefindermrm/ccc041d26ee1) +- openms_featurefindermultiplex was updated to [c9b2a5022d9e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurefindermultiplex/c9b2a5022d9e) +- openms_featurelinkerlabeled was updated to [90a5563d9a69](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurelinkerlabeled/90a5563d9a69) +- openms_featurelinkerunlabeled was updated to [fbe41f0cc71e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurelinkerunlabeled/fbe41f0cc71e) +- openms_featurelinkerunlabeledkd was updated to [902d0f778dcf](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurelinkerunlabeledkd/902d0f778dcf) +- openms_featurelinkerunlabeledqt was updated to [8394bcb2b0ca](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_featurelinkerunlabeledqt/8394bcb2b0ca) +- openms_fileconverter was updated to [8b6336c903ef](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_fileconverter/8b6336c903ef) +- openms_filefilter was updated to [86a9dd43dd09](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_filefilter/86a9dd43dd09) +- openms_fileinfo was updated to [5a45e6ac9aae](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_fileinfo/5a45e6ac9aae) +- openms_filemerger was updated to [0643576e7f51](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_filemerger/0643576e7f51) +- openms_fuzzydiff was updated to [5369624840b9](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_fuzzydiff/5369624840b9) +- openms_gnpsexport was updated to [87a970d1514b](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_gnpsexport/87a970d1514b) +- openms_highresprecursormasscorrector was updated to [b606d4a12558](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_highresprecursormasscorrector/b606d4a12558) +- openms_idconflictresolver was updated to [5c9e1b5d3b95](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idconflictresolver/5c9e1b5d3b95) +- openms_idextractor was updated to [a6124b08daff](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idextractor/a6124b08daff) +- openms_idfileconverter was updated to [5e9c35b8d194](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idfileconverter/5e9c35b8d194) +- openms_idfilter was updated to [093a52644633](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idfilter/093a52644633) +- openms_idmapper was updated to [ea02403ff738](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idmapper/ea02403ff738) +- openms_idmassaccuracy was updated to [0819fd9da302](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idmassaccuracy/0819fd9da302) +- openms_idmerger was updated to [bdcdd2a5ea43](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idmerger/bdcdd2a5ea43) +- openms_idposteriorerrorprobability was updated to [93e6ec445d5d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idposteriorerrorprobability/93e6ec445d5d) +- openms_idripper was updated to [e64214bd2f6e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idripper/e64214bd2f6e) +- openms_idrtcalibration was updated to [f7226e34dc70](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idrtcalibration/f7226e34dc70) +- openms_idscoreswitcher was updated to [5a56ed4fb4c2](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idscoreswitcher/5a56ed4fb4c2) +- openms_idsplitter was updated to [ae90bc9b7936](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_idsplitter/ae90bc9b7936) +- openms_internalcalibration was updated to [a1dffbb8fbc3](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_internalcalibration/a1dffbb8fbc3) +- openms_isobaricanalyzer was updated to [30f67afbf5be](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_isobaricanalyzer/30f67afbf5be) +- openms_luciphoradapter was updated to [949086930a49](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_luciphoradapter/949086930a49) +- openms_mapaligneridentification was updated to [77b66c1c5415](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mapaligneridentification/77b66c1c5415) +- openms_mapalignerposeclustering was updated to [e527a8a430dd](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mapalignerposeclustering/e527a8a430dd) +- openms_mapalignerspectrum was updated to [c4c64002d01e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mapalignerspectrum/c4c64002d01e) +- openms_mapalignertreeguided was updated to [37d1f970c572](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mapalignertreeguided/37d1f970c572) +- openms_mapnormalizer was updated to [4b603a44b009](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mapnormalizer/4b603a44b009) +- openms_maprttransformer was updated to [317a5cb79894](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_maprttransformer/317a5cb79894) +- openms_mapstatistics was updated to [905a2b83fa9d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mapstatistics/905a2b83fa9d) +- openms_mascotadapter was updated to [087b9d721a08](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mascotadapter/087b9d721a08) +- openms_mascotadapteronline was updated to [5f9e1383f6e4](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mascotadapteronline/5f9e1383f6e4) +- openms_masscalculator was updated to [d905af02ce63](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_masscalculator/d905af02ce63) +- openms_masstraceextractor was updated to [02e876ada338](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_masstraceextractor/02e876ada338) +- openms_metabolitespectralmatcher was updated to [e46a9e72c395](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_metabolitespectralmatcher/e46a9e72c395) +- openms_metaprosip was updated to [5f72a8fa935d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_metaprosip/5f72a8fa935d) +- openms_mrmmapper was updated to [47f82df5bdea](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mrmmapper/47f82df5bdea) +- openms_mrmpairfinder was updated to [e5ebdbc5e072](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mrmpairfinder/e5ebdbc5e072) +- openms_mrmtransitiongrouppicker was updated to [1c96645cbfbd](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mrmtransitiongrouppicker/1c96645cbfbd) +- openms_msfraggeradapter was updated to [907fda39b333](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_msfraggeradapter/907fda39b333) +- openms_msgfplusadapter was updated to [810779f0cf49](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_msgfplusadapter/810779f0cf49) +- openms_msstatsconverter was updated to [d0a7080ddf67](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_msstatsconverter/d0a7080ddf67) +- openms_multiplexresolver was updated to [53b202a738c3](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_multiplexresolver/53b202a738c3) +- openms_mzmlsplitter was updated to [609bc5efdcc9](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mzmlsplitter/609bc5efdcc9) +- openms_mztabexporter was updated to [748dfbdf2201](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_mztabexporter/748dfbdf2201) +- openms_noisefiltergaussian was updated to [464f7877215b](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_noisefiltergaussian/464f7877215b) +- openms_noisefiltersgolay was updated to [35468667de97](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_noisefiltersgolay/35468667de97) +- openms_novoradapter was updated to [fa544e12732f](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_novoradapter/fa544e12732f) +- openms_nucleicacidsearchengine was updated to [a19e844b82ad](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_nucleicacidsearchengine/a19e844b82ad) +- openms_openpepxl was updated to [10d8b43176a9](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/10d8b43176a9) +- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) +- openms_openpepxllf was updated to [848df89b641a](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxllf/848df89b641a) +- openms_openswathanalyzer was updated to [9cdf469a3241](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathanalyzer/9cdf469a3241) +- openms_openswathassaygenerator was updated to [74d39f98b0c4](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathassaygenerator/74d39f98b0c4) +- openms_openswathchromatogramextractor was updated to [92ecd10e5c03](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathchromatogramextractor/92ecd10e5c03) +- openms_openswathconfidencescoring was updated to [e480a424b40f](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathconfidencescoring/e480a424b40f) +- openms_openswathdecoygenerator was updated to [e833a89f25c8](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathdecoygenerator/e833a89f25c8) +- openms_openswathfeaturexmltotsv was updated to [604c9363dcfd](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathfeaturexmltotsv/604c9363dcfd) +- openms_openswathfilesplitter was updated to [f8fcaa2dfd68](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathfilesplitter/f8fcaa2dfd68) +- openms_openswathmzmlfilecacher was updated to [e7c43d17e3dc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathmzmlfilecacher/e7c43d17e3dc) +- openms_openswathmzmlfilecacher was updated to [fe39f583c19a](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathmzmlfilecacher/fe39f583c19a) +- openms_openswathrewritetofeaturexml was updated to [77f01ffce2b7](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathrewritetofeaturexml/77f01ffce2b7) +- openms_openswathrtnormalizer was updated to [0eaf3d4219cf](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathrtnormalizer/0eaf3d4219cf) +- openms_openswathworkflow was updated to [ec4490c65f95](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openswathworkflow/ec4490c65f95) +- openms_peakpickerhires was updated to [401f500aae50](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_peakpickerhires/401f500aae50) +- openms_peakpickeriterative was updated to [025261d4bd60](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_peakpickeriterative/025261d4bd60) +- openms_peakpickerwavelet was updated to [bf0b36140329](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_peakpickerwavelet/bf0b36140329) +- openms_peptideindexer was updated to [0693b186f39e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_peptideindexer/0693b186f39e) +- openms_percolatoradapter was updated to [02796e3ddec1](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/02796e3ddec1) +- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) +- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) +- openms_phosphoscoring was updated to [af4a55cbf5b6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_phosphoscoring/af4a55cbf5b6) +- openms_precursormasscorrector was updated to [b71e9103d269](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_precursormasscorrector/b71e9103d269) +- openms_proteininference was updated to [e278a1abeebe](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_proteininference/e278a1abeebe) +- openms_proteinquantifier was updated to [89ece0562fe0](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_proteinquantifier/89ece0562fe0) +- openms_proteinresolver was updated to [c2612cb89529](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_proteinresolver/c2612cb89529) +- openms_psmfeatureextractor was updated to [c68cd6e1d3dc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_psmfeatureextractor/c68cd6e1d3dc) +- openms_qccalculator was updated to [f6f07c3e99a2](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qccalculator/f6f07c3e99a2) +- openms_qcembedder was updated to [815e502a2288](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qcembedder/815e502a2288) +- openms_qcexporter was updated to [bb22e965eb5a](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qcexporter/bb22e965eb5a) +- openms_qcextractor was updated to [9a527fdadffc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qcextractor/9a527fdadffc) +- openms_qcimporter was updated to [988ae4cfb522](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qcimporter/988ae4cfb522) +- openms_qcmerger was updated to [86a29d233856](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qcmerger/86a29d233856) +- openms_qcshrinker was updated to [047c8ea82162](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qcshrinker/047c8ea82162) +- openms_qualitycontrol was updated to [ea02cc72f0b9](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_qualitycontrol/ea02cc72f0b9) +- openms_rnadigestor was updated to [ef145c9fb233](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_rnadigestor/ef145c9fb233) +- openms_rnamasscalculator was updated to [148c000ea2ec](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_rnamasscalculator/148c000ea2ec) +- openms_rnpxlsearch was updated to [33e2670c3a18](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_rnpxlsearch/33e2670c3a18) +- openms_rnpxlxicfilter was updated to [8ee87d58ed48](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_rnpxlxicfilter/8ee87d58ed48) +- openms_seedlistgenerator was updated to [f6076d07a33a](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_seedlistgenerator/f6076d07a33a) +- openms_semanticvalidator was updated to [a421b4ddf47c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_semanticvalidator/a421b4ddf47c) +- openms_sequencecoveragecalculator was updated to [b5348eebc36c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_sequencecoveragecalculator/b5348eebc36c) +- openms_simplesearchengine was updated to [a1724438d580](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_simplesearchengine/a1724438d580) +- openms_siriusadapter was updated to [b7505ec60b7d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_siriusadapter/b7505ec60b7d) +- openms_speclibcreator was updated to [5b237d23cb7d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_speclibcreator/5b237d23cb7d) +- openms_speclibsearcher was updated to [2d6e49acbb56](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_speclibsearcher/2d6e49acbb56) +- openms_spectrafilterbernnorm was updated to [cdc1cdb2ad70](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilterbernnorm/cdc1cdb2ad70) +- openms_spectrafiltermarkermower was updated to [b4f6792e0b22](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafiltermarkermower/b4f6792e0b22) +- openms_spectrafilternlargest was updated to [503e18eb2596](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilternlargest/503e18eb2596) +- openms_spectrafilternormalizer was updated to [4ba7fb47318c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilternormalizer/4ba7fb47318c) +- openms_spectrafilterparentpeakmower was updated to [2199afa87e7d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilterparentpeakmower/2199afa87e7d) +- openms_spectrafilterscaler was updated to [f714192eab03](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilterscaler/f714192eab03) +- openms_spectrafiltersqrtmower was updated to [241875955167](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafiltersqrtmower/241875955167) +- openms_spectrafilterthresholdmower was updated to [53fec73970ad](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilterthresholdmower/53fec73970ad) +- openms_spectrafilterwindowmower was updated to [da5c2d11fcb8](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrafilterwindowmower/da5c2d11fcb8) +- openms_spectramerger was updated to [b20b1f195cf2](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectramerger/b20b1f195cf2) +- openms_spectrastsearchadapter was updated to [52dd59548339](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_spectrastsearchadapter/52dd59548339) +- openms_targetedfileconverter was updated to [43b9ed22e8ce](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_targetedfileconverter/43b9ed22e8ce) +- openms_textexporter was updated to [b5de4c3efbdd](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_textexporter/b5de4c3efbdd) +- openms_ticcalculator was updated to [5f36444a0f9d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_ticcalculator/5f36444a0f9d) +- openms_tofcalibration was updated to [b6f7cec6cc9e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_tofcalibration/b6f7cec6cc9e) +- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) +- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) +- openms_xfdr was updated to [cf9b51c0b15e](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/cf9b51c0b15e) +- openms_xmlvalidator was updated to [ad2ba3a95a02](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xmlvalidator/ad2ba3a95a02) +- openms_xtandemadapter was updated to [567de7cb1766](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xtandemadapter/567de7cb1766) + +## SAM/BAM + +- sambamba_flagstat was updated to [ce3927af5a8f](https://toolshed.g2.bx.psu.edu/view/bgruening/sambamba_flagstat/ce3927af5a8f) +- sambamba_markdup was updated to [6c916a5a6afb](https://toolshed.g2.bx.psu.edu/view/bgruening/sambamba_markdup/6c916a5a6afb) +- sambamba_merge was updated to [480c9d4c8957](https://toolshed.g2.bx.psu.edu/view/bgruening/sambamba_merge/480c9d4c8957) +- sambamba_sort was updated to [87c1b543c4c4](https://toolshed.g2.bx.psu.edu/view/bgruening/sambamba_sort/87c1b543c4c4) +