From 96b772544e7672f1d365bd4a26ff36f6cf07c691 Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Sun, 16 Jul 2023 17:30:15 +0200 Subject: [PATCH] Autoupdate tool blog post --- _posts/2023-07-16-tool-update.md | 76 ++++++++++++++++++++++++++++++++ 1 file changed, 76 insertions(+) create mode 100644 _posts/2023-07-16-tool-update.md diff --git a/_posts/2023-07-16-tool-update.md b/_posts/2023-07-16-tool-update.md new file mode 100644 index 000000000..01b7a1ad0 --- /dev/null +++ b/_posts/2023-07-16-tool-update.md @@ -0,0 +1,76 @@ +--- +site: freiburg +tags: [tools] +title: UseGalaxy.eu Tool Updates for 2023-07-16 +supporters: +- denbi +- elixir +--- + +On 2023-07-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #395](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#395/) + + +## Metabolomics + +- matchms_convert was updated to [b9cc12600553](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/b9cc12600553) +- matchms_filtering was updated to [a177ac3c752c](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/a177ac3c752c) +- matchms_fingerprint_similarity was updated to [84af792d3a78](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/84af792d3a78) +- matchms_formatter was updated to [1b09315a3f87](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/1b09315a3f87) +- matchms_metadata_export was updated to [f04610d25411](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/f04610d25411) +- matchms_metadata_match was updated to [03bc9b7f40f6](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/03bc9b7f40f6) +- matchms_networking was updated to [8147d93d372d](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/8147d93d372d) +- matchms_similarity was updated to [e5010b19d64d](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_similarity/e5010b19d64d) +- matchms_spectral_similarity was updated to [9ff95a1a2705](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/9ff95a1a2705) +- matchms_split was updated to [0cf68b536cd1](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/0cf68b536cd1) +- ramclustr was updated to [9b716db0a786](https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr/9b716db0a786) +- ramclustr_define_experiment was updated to [5f2b58dadb39](https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr_define_experiment/5f2b58dadb39) +- recetox_xmsannotator_advanced was updated to [cfd2e19f00a9](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_xmsannotator_advanced/cfd2e19f00a9) + +## QIIME 2 + +- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) + +## Proteomics + +- openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) +- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) +- openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) +- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) +- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) +- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) +- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) + +## hca_sc_scanpy_tools + +- anndata_ops was updated to [a0274bc43b7e](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/anndata_ops/a0274bc43b7e) +- scanpy_find_markers was updated to [64259337506f](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_markers/64259337506f) + +## hca_sc_utils_viz + +- ucsc_cell_browser was updated to [97483e5ec21e](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/ucsc_cell_browser/97483e5ec21e) + +## Annotation + +- miniprot was updated to [52bdc302299b](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot/52bdc302299b) +- miniprot_index was updated to [3ccb407501d8](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot_index/3ccb407501d8) + +## Metagenomic Analysis + +- dram_annotate was updated to [4058af4457c0](https://toolshed.g2.bx.psu.edu/view/iuc/dram_annotate/4058af4457c0) +- dram_distill was updated to [9471e3d97837](https://toolshed.g2.bx.psu.edu/view/iuc/dram_distill/9471e3d97837) +- dram_merge_annotations was updated to [96c0067106ec](https://toolshed.g2.bx.psu.edu/view/iuc/dram_merge_annotations/96c0067106ec) +- dram_neighborhoods was updated to [d1f8d32bbe3b](https://toolshed.g2.bx.psu.edu/view/iuc/dram_neighborhoods/d1f8d32bbe3b) +- dram_strainer was updated to [684676cd6512](https://toolshed.g2.bx.psu.edu/view/iuc/dram_strainer/684676cd6512) + +## Phylogenetics + +- pangolin was updated to [9d61d3fa046c](https://toolshed.g2.bx.psu.edu/view/iuc/pangolin/9d61d3fa046c) + +## Variant Calling + +- smgu_frameshift_deletions_checks was updated to [029d90b0c4f6](https://toolshed.g2.bx.psu.edu/view/iuc/smgu_frameshift_deletions_checks/029d90b0c4f6) + +## None + +- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) +