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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2024-08-04
+supporters:
+- denbi
+- elixir
+---
+
+On 2024-08-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #468](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#468/)
+
+
+## Climate Analysis
+
+- divand_full_analysis was updated to [484930fdc002](https://toolshed.g2.bx.psu.edu/view/ecology/divand_full_analysis/484930fdc002)
+
+## Get Data
+
+- argo_getdata was updated to [28c8f085d1b4](https://toolshed.g2.bx.psu.edu/view/ecology/argo_getdata/28c8f085d1b4)
+
+## Metabolomics
+
+- recetox_aplcms_align_features was updated to [79ad928a0dae](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_align_features/79ad928a0dae)
+- recetox_aplcms_compute_clusters was updated to [f3a18e020cdd](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_compute_clusters/f3a18e020cdd)
+- recetox_aplcms_compute_template was updated to [dfebc82ba1f0](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_compute_template/dfebc82ba1f0)
+- recetox_aplcms_correct_time was updated to [9064aecc78a7](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_correct_time/9064aecc78a7)
+- recetox_aplcms_generate_feature_table was updated to [b3413f335327](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_generate_feature_table/b3413f335327)
+- recetox_aplcms_merge_known_table was updated to [17a48d0a80f4](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_merge_known_table/17a48d0a80f4)
+- recetox_aplcms_recover_weaker_signals was updated to [d7f5878a98c3](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_recover_weaker_signals/d7f5878a98c3)
+- recetox_aplcms_remove_noise was updated to [ffbabefbd2e2](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_remove_noise/ffbabefbd2e2)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## Proteomics
+
+- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c)
+- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc)
+- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d)
+- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173)
+- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358)
+- qupath_roi_splitter was updated to [17c54a716a5b](https://toolshed.g2.bx.psu.edu/view/galaxyp/qupath_roi_splitter/17c54a716a5b)
+
+## ChemicalToolBox
+
+- alphafold2 was updated to [6ab1a261520a](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/alphafold2/6ab1a261520a)
+
+## Graph/Display Data
+
+- jbrowse2 was updated to [878c27dfea9d](https://toolshed.g2.bx.psu.edu/view/fubar/jbrowse2/878c27dfea9d)
+
+## Imaging
+
+- bioimage_inference was updated to [caea9ee1ffac](https://toolshed.g2.bx.psu.edu/view/bgruening/bioimage_inference/caea9ee1ffac)
+- scimap_anndata_to_csv was updated to [302ddf03402f](https://toolshed.g2.bx.psu.edu/view/goeckslab/scimap_anndata_to_csv/302ddf03402f)
+- background_removal was updated to [6e9e98a7be4e](https://toolshed.g2.bx.psu.edu/view/imgteam/background_removal/6e9e98a7be4e)
+
+## Assembly
+
+- genomescope was updated to [460fad600dce](https://toolshed.g2.bx.psu.edu/view/iuc/genomescope/460fad600dce)
+- salsa was updated to [58a870ef434c](https://toolshed.g2.bx.psu.edu/view/iuc/salsa/58a870ef434c)
+- unicycler was updated to [e022dff952df](https://toolshed.g2.bx.psu.edu/view/iuc/unicycler/e022dff952df)
+- yahs was updated to [ff4031bfaa22](https://toolshed.g2.bx.psu.edu/view/iuc/yahs/ff4031bfaa22)
+
+## Convert Formats
+
+- ucsc_maftoaxt was updated to [3a4256d4f079](https://toolshed.g2.bx.psu.edu/view/iuc/ucsc_maftoaxt/3a4256d4f079)
+
+## Metagenomic Analysis
+
+- bracken was updated to [0c7b6eb7e752](https://toolshed.g2.bx.psu.edu/view/iuc/bracken/0c7b6eb7e752)
+- customize_metaphlan_database was updated to [a755466eb47c](https://toolshed.g2.bx.psu.edu/view/iuc/customize_metaphlan_database/a755466eb47c)
+- extract_metaphlan_database was updated to [4b6ac1f0042b](https://toolshed.g2.bx.psu.edu/view/iuc/extract_metaphlan_database/4b6ac1f0042b)
+- krakentools_combine_kreports was updated to [4960abe31b4d](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_combine_kreports/4960abe31b4d)
+- merge_metaphlan_tables was updated to [05ad7d35ce92](https://toolshed.g2.bx.psu.edu/view/iuc/merge_metaphlan_tables/05ad7d35ce92)
+- metaphlan was updated to [b6897977d13e](https://toolshed.g2.bx.psu.edu/view/iuc/metaphlan/b6897977d13e)
+- mg_toolkit_bulk_download was updated to [a5eeaeba30d9](https://toolshed.g2.bx.psu.edu/view/iuc/mg_toolkit_bulk_download/a5eeaeba30d9)
+- recentrifuge was updated to [d4fbfd31696c](https://toolshed.g2.bx.psu.edu/view/iuc/recentrifuge/d4fbfd31696c)
+
+## Mothur
+
+- mothur_align_seqs was updated to [152ae632ab19](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_align_seqs/152ae632ab19)
+
+## Nanopore
+
+- clair3 was updated to [c8ba8286e7c0](https://toolshed.g2.bx.psu.edu/view/iuc/clair3/c8ba8286e7c0)
+
+## Phylogenetics
+
+- hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4)
+
+## Single-cell
+
+- scanpy_cluster_reduce_dimension was updated to [64ff3ef24fae](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_cluster_reduce_dimension/64ff3ef24fae)
+- scanpy_filter was updated to [aa0059118fb9](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/aa0059118fb9)
+- scanpy_normalize was updated to [f3ad813a58a3](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_normalize/f3ad813a58a3)
+- scanpy_plot was updated to [70fa84e99463](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/70fa84e99463)
+- scanpy_remove_confounders was updated to [e66884b1c1a5](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_remove_confounders/e66884b1c1a5)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+
+## hca_sc_monocle3_tools
+
+- monocle3_reducedim was updated to [98f4918eee70](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/monocle3_reducedim/98f4918eee70)
+
+## Muon Spectroscopy
+
+- mudirac was updated to [eaf0f01cc0f6](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/mudirac/eaf0f01cc0f6)
+