From e4aa05227454428de39c1fd7e322fec212055a6a Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Tue, 26 Sep 2023 05:13:57 +0200 Subject: [PATCH] Autoupdate tool blog post --- _posts/2023-09-26-tool-update.md | 120 +++++++++++++++++++++++++++++++ 1 file changed, 120 insertions(+) create mode 100644 _posts/2023-09-26-tool-update.md diff --git a/_posts/2023-09-26-tool-update.md b/_posts/2023-09-26-tool-update.md new file mode 100644 index 000000000..b8252217e --- /dev/null +++ b/_posts/2023-09-26-tool-update.md @@ -0,0 +1,120 @@ +--- +site: freiburg +tags: [tools] +title: UseGalaxy.eu Tool Updates for 2023-09-26 +supporters: +- denbi +- elixir +--- + +On 2023-09-26, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #406](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#406/) + + +## Machine Learning + +- keras_batch_models was updated to [9d77b259ef27](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_batch_models/9d77b259ef27) +- keras_model_builder was updated to [f7ecdde4b201](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_model_builder/f7ecdde4b201) +- keras_model_config was updated to [61a6132df9e0](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_model_config/61a6132df9e0) +- keras_train_and_eval was updated to [0af678661e20](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_train_and_eval/0af678661e20) +- ml_visualization_ex was updated to [a536d2736c2d](https://toolshed.g2.bx.psu.edu/view/bgruening/ml_visualization_ex/a536d2736c2d) +- model_prediction was updated to [980bf31faa05](https://toolshed.g2.bx.psu.edu/view/bgruening/model_prediction/980bf31faa05) +- sklearn_build_pipeline was updated to [9160cb4069c2](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_build_pipeline/9160cb4069c2) +- sklearn_clf_metrics was updated to [e9821a426d75](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_clf_metrics/e9821a426d75) +- sklearn_data_preprocess was updated to [045faa05e712](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_data_preprocess/045faa05e712) +- sklearn_discriminant_classifier was updated to [fc48ce12454b](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_discriminant_classifier/fc48ce12454b) +- sklearn_ensemble was updated to [1682df52c084](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_ensemble/1682df52c084) +- sklearn_estimator_attributes was updated to [5a125d1ac9b9](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_estimator_attributes/5a125d1ac9b9) +- sklearn_feature_selection was updated to [5276bdb49315](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_feature_selection/5276bdb49315) +- sklearn_fitted_model_eval was updated to [0926c2b1315f](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_fitted_model_eval/0926c2b1315f) +- sklearn_generalized_linear was updated to [14f0ccc85505](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_generalized_linear/14f0ccc85505) +- sklearn_label_encoder was updated to [2be90d2f29a7](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_label_encoder/2be90d2f29a7) +- sklearn_lightgbm was updated to [3045d322d4ac](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_lightgbm/3045d322d4ac) +- sklearn_model_validation was updated to [30f892a9b46d](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_model_validation/30f892a9b46d) +- sklearn_nn_classifier was updated to [4db563e8d453](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_nn_classifier/4db563e8d453) +- sklearn_numeric_clustering was updated to [aeca97d9a214](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_numeric_clustering/aeca97d9a214) +- sklearn_pairwise_metrics was updated to [e79200975daf](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_pairwise_metrics/e79200975daf) +- sklearn_pca was updated to [945a53c248de](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_pca/945a53c248de) +- sklearn_regression_metrics was updated to [6db5c1dfb076](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_regression_metrics/6db5c1dfb076) +- sklearn_sample_generator was updated to [ab9977548806](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_sample_generator/ab9977548806) +- sklearn_searchcv was updated to [d37a7f17e35d](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_searchcv/d37a7f17e35d) +- sklearn_svm_classifier was updated to [6d23883e0b94](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_svm_classifier/6d23883e0b94) +- sklearn_to_categorical was updated to [2d53571c2f00](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_to_categorical/2d53571c2f00) +- sklearn_train_test_eval was updated to [adf9f8d5ab9a](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_train_test_eval/adf9f8d5ab9a) +- sklearn_train_test_split was updated to [33c564caa3c4](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_train_test_split/33c564caa3c4) + +## Statistics + +- scipy_sparse was updated to [9f9cf31e3111](https://toolshed.g2.bx.psu.edu/view/bgruening/scipy_sparse/9f9cf31e3111) + +## Data and Metadata Management + +- eml2eal was updated to [5c0290c4225a](https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/5c0290c4225a) +- makeeml was updated to [9cbac7a9b1a3](https://toolshed.g2.bx.psu.edu/view/ecology/makeeml/9cbac7a9b1a3) + +## QIIME 2 + +- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) + +## Get Data + +- ncbi_datasets was updated to [75acf92c8fd5](https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_datasets/75acf92c8fd5) +- sra_tools was updated to [734abc7ac21d](https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/734abc7ac21d) + +## RNA Analysis + +- edger was updated to [a8305cf0c951](https://toolshed.g2.bx.psu.edu/view/iuc/edger/a8305cf0c951) +- trinity was updated to [8f1c3df4dd49](https://toolshed.g2.bx.psu.edu/view/iuc/trinity/8f1c3df4dd49) + +## Proteomics + +- calisp was updated to [867f17ede7f3](https://toolshed.g2.bx.psu.edu/view/galaxyp/calisp/867f17ede7f3) +- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) +- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) +- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) +- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) +- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) + +## Assembly + +- canu was updated to [86f150c8019d](https://toolshed.g2.bx.psu.edu/view/bgruening/canu/86f150c8019d) +- abyss was updated to [a929ce596a34](https://toolshed.g2.bx.psu.edu/view/iuc/abyss/a929ce596a34) + +## Annotation + +- bakta was updated to [728dacaf08a9](https://toolshed.g2.bx.psu.edu/view/iuc/bakta/728dacaf08a9) + +## Convert Formats + +- biom_convert was updated to [e177a8ea0bf1](https://toolshed.g2.bx.psu.edu/view/iuc/biom_convert/e177a8ea0bf1) + +## Metagenomic Analysis + +- mapseq was updated to [a09139ba9c06](https://toolshed.g2.bx.psu.edu/view/iuc/mapseq/a09139ba9c06) +- staramr was updated to [3b22de20bd4b](https://toolshed.g2.bx.psu.edu/view/nml/staramr/3b22de20bd4b) + +## Nanopore + +- pycoqc was updated to [dc1500f42073](https://toolshed.g2.bx.psu.edu/view/iuc/pycoqc/dc1500f42073) + +## Picard + +- picard was updated to [f9242e01365a](https://toolshed.g2.bx.psu.edu/view/devteam/picard/f9242e01365a) + +## Text Manipulation + +- filter_tabular was updated to [557ec8d7087d](https://toolshed.g2.bx.psu.edu/view/iuc/filter_tabular/557ec8d7087d) +- query_tabular was updated to [3a6b78c39dca](https://toolshed.g2.bx.psu.edu/view/iuc/query_tabular/3a6b78c39dca) + +## Variant Calling + +- ucsc_fatovcf was updated to [d9965e143053](https://toolshed.g2.bx.psu.edu/view/iuc/ucsc_fatovcf/d9965e143053) + +## None + +- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) +- data_manager_mapseq was updated to [dbf2735e8480](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_mapseq/dbf2735e8480) + +## NCBI Blast + +- blastxml_to_top_descr was updated to [8dc4ba7eba5d](https://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr/8dc4ba7eba5d) +