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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2024-03-31
+supporters:
+- denbi
+- elixir
+---
+
+On 2024-03-31, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #438](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#438/)
+
+
+## Text Manipulation
+
+- text_processing was updated to [fbf99087e067](https://toolshed.g2.bx.psu.edu/view/bgruening/text_processing/fbf99087e067)
+
+## Ecoregionalization
+
+- ecoregion_geonearestneighbor was updated to [5cde56683579](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_geonearestneighbor/5cde56683579)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## Convert Formats
+
+- graphicsmagick_image_compare was updated to [2a5a0b61a84e](https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_compare/2a5a0b61a84e)
+- graphicsmagick_image_convert was updated to [f0de81b548eb](https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_convert/f0de81b548eb)
+- graphicsmagick_image_montage was updated to [31dfed0f0eed](https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_montage/31dfed0f0eed)
+- msconvert was updated to [545054b15d7c](https://toolshed.g2.bx.psu.edu/view/galaxyp/msconvert/545054b15d7c)
+- bam2fastx was updated to [7f7f2ee03430](https://toolshed.g2.bx.psu.edu/view/iuc/bam2fastx/7f7f2ee03430)
+
+## Proteomics
+
+- openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6)
+- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c)
+- openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834)
+- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc)
+- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d)
+- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173)
+- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358)
+
+## Assembly
+
+- flye was updated to [291923e6f276](https://toolshed.g2.bx.psu.edu/view/bgruening/flye/291923e6f276)
+- pretext_graph was updated to [eca7d3a0c5f2](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_graph/eca7d3a0c5f2)
+
+## Annotation
+
+- compleasm was updated to [cfec9601b25d](https://toolshed.g2.bx.psu.edu/view/iuc/compleasm/cfec9601b25d)
+- miniprot was updated to [6b20d051d0dc](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot/6b20d051d0dc)
+- miniprot_index was updated to [aeb4c76d007b](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot_index/aeb4c76d007b)
+- mirmachine was updated to [85010d0eaa6c](https://toolshed.g2.bx.psu.edu/view/iuc/mirmachine/85010d0eaa6c)
+
+## FASTA/FASTQ
+
+- seqkit_fx2tab was updated to [7dd90df319f6](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_fx2tab/7dd90df319f6)
+- seqkit_locate was updated to [7e30613be1c6](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_locate/7e30613be1c6)
+- seqkit_stats was updated to [fe1ae2ebf63d](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_stats/fe1ae2ebf63d)
+
+## Phylogenetics
+
+- hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4)
+- pangolin was updated to [8ad84c5753ea](https://toolshed.g2.bx.psu.edu/view/iuc/pangolin/8ad84c5753ea)
+
+## SAM/BAM
+
+- mosdepth was updated to [91d89a597aac](https://toolshed.g2.bx.psu.edu/view/iuc/mosdepth/91d89a597aac)
+
+## Send Data
+
+- ena_upload was updated to [ea5e944f447d](https://toolshed.g2.bx.psu.edu/view/iuc/ena_upload/ea5e944f447d)
+
+## Single-cell
+
+- baredsc_1d was updated to [769d815e4b0d](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/769d815e4b0d)
+- baredsc_2d was updated to [a90f8efe08b4](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/a90f8efe08b4)
+- baredsc_combine_1d was updated to [5b7c81b35b89](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/5b7c81b35b89)
+- baredsc_combine_2d was updated to [02fc39c8610d](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/02fc39c8610d)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+
+## Metabolomics
+
+- dimet_abundance_plot was updated to [5e379358c023](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_abundance_plot/5e379358c023)
+- dimet_bivariate_analysis was updated to [ed01c0809ae8](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_bivariate_analysis/ed01c0809ae8)
+- dimet_differential_analysis was updated to [f8247afcd994](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_analysis/f8247afcd994)
+- dimet_differential_multigroup_analysis was updated to [daefbae2aacf](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_multigroup_analysis/daefbae2aacf)
+- dimet_enrichment_plot was updated to [b520764e0d98](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_enrichment_plot/b520764e0d98)
+- dimet_isotopologues_plot was updated to [16c64719226c](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_isotopologues_plot/16c64719226c)
+- dimet_metabologram was updated to [82fb756e71cf](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_metabologram/82fb756e71cf)
+- dimet_pca_analysis was updated to [3b9226db8ab6](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_analysis/3b9226db8ab6)
+- dimet_pca_plot was updated to [76c2567165fa](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_plot/76c2567165fa)
+- dimet_timecourse_analysis was updated to [e814718ecb07](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_timecourse_analysis/e814718ecb07)
+
+## hca_sc_scanpy_tools
+
+- scanpy_scale_data was updated to [1bb1d4419c48](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_scale_data/1bb1d4419c48)
+