random list of posts that would be nice to write

[bgruening]

• https://coblet2022.bezmialem.edu.tr/order-of-presentations
• @gallardoalba talk about Genome assembly
• Bjoern in Brüssel EOSC mail from "Horizon Europe projects coordination meeting in the context of the EOSC European Partnership / next steps"
• EOSC4Cancer KO
• @oanamarchis ESG KO blogpost
• S Möhrle MA thesis
• https://elixir-europe.org/news/galaxy_knowledge_exchange
• Cristóbal ERGA/BGE meeting in Leiden
• [GTN Tutorial] Removing the effects of the cell cycle: Creating cell cycle regression tutorial galaxyproject/training-material#3791 (@pavanvidem )
• @pavanvidem your new single cell tutorial and scATAC seq deserve a post, we need it to advertise stuff.
• https://www.nature.com/articles/s41559-023-02056-2 -> nanopore with nice graphics and citing EU

[bgruening]

Small update from running Galaxy with celery since 2 weeks. We have are running 3 workers, each of them has processed ~330.000 tasks, so that we just hit 1M tasks. So far everything seems to be very stable.
Only ~40 tasks out 1M failed.
The distribution of tasks looks like that (for one worker, but very similar across all 3).

[bgruening]

• https://ossinsight.io/analyze/galaxyproject/galaxy

Its a site that tries to access the importance of an open science project with some nice statistics etc. A Small post with a link to this site ala ... did you know Galaxy has ... contributors and 102 PRs have been merged in the last month....

[bgruening]

• write a post how to get ITs into EU

@bgruening was ist das? Bitte mehr Infos :)

ITs are interactive tools, this is more for our admins to show how easy it is to contribute to our service by addings ITs to our Instance or to the main Galaxy repo. E.g. usegalaxy-eu/galaxy#50 and small introduction to ITs ...

[bgruening]

• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9793390/ <-- mention Galaxy for COVID

Anika

[bgruening]

New paper: "The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond" (https://genome.cshlp.org/content/early/2023/02/23/gr.276963.122.long).
It includes a detailed description about the Galaxy SDK and the relation to Bioconda, Biocontainers and automatic training generation.

[bgruening]

• https://journals.biologists.com/jcs/article/136/1/jcs260182/286214/STAT3-signaling-induced-by-the-IL-6-family-of
• https://www.pnas.org/doi/full/10.1073/pnas.2122467120

Sebastian

[bgruening]

https://www.nature.com/articles/d41586-023-01469-0 (maybe @elek-tron-ich ?)

[bgruening]

Show case of the Infectious diseases toolkit

[bgruening]

TIaaS: https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad048/7217081

[bgruening]

https://www.nature.com/articles/s41598-023-36788-9

[bgruening]

a news item linking to https://elixir-europe.org/news/australia_visit_2023 could be added.

[bgruening]

Dear Björn,
I hope you are doing well. Just wanted to share with you and your team our latest manuscript that uses multiple Galaxy tools and the Galaxy workflow manager to explore the antigenic diversity of the malaria parasite.

[bgruening]

Bridging the gap in African biodiversity genomics and bioinformatics - https://www.nature.com/articles/s41587-023-01933-2

[bgruening]

https://www.egi.eu/article/fair-data-analytics-eosc-egi-eurosciencegateway/ need to be put on the ESG homepage

[bgruening]

Galaxy AU visit:

https://www.biocommons.org.au/news/2023elixirvisit
https://www.biocommons.org.au/elixir-collaboration
https://elixir-europe.org/news/australia_visit_2023

[sebastian-schaaf]

ELIXIR all hands meeting, we have a blog post already, this link could be added: https://f1000research.com/documents/12-1126

Submitted as PR #2269