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domains.php
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="Functional domains of Puccinia proteins.">
<meta name="author" content="raghav Kataria">
<!-- App Favicon -->
<link rel="shortcut icon" href="assets/images/gallery/favicon.ico">
<!-- App title -->
<title>Pathogen Domains - TRustDB</title>
<!-- Plugins css-->
<link href="assets/plugins/multiselect/css/multi-select.css" rel="stylesheet" type="text/css" />
<!-- DataTables -->
<link href="assets/plugins/datatables/dataTables.bootstrap4.min.css" rel="stylesheet" type="text/css" />
<link href="assets/plugins/datatables/buttons.bootstrap4.min.css" rel="stylesheet" type="text/css" />
<!-- Custom box css -->
<link href="assets/plugins/custombox/css/custombox.min.css" rel="stylesheet">
<!-- Switchery css -->
<link href="assets/plugins/switchery/switchery.min.css" rel="stylesheet" />
<!-- Bootstrap CSS -->
<link href="assets/css/bootstrap.min.css" rel="stylesheet" type="text/css" />
<!-- App CSS -->
<link href="assets/css/style.css" rel="stylesheet" type="text/css" />
<!-- Modernizr js -->
<script src="assets/js/modernizr.min.js"></script>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=G-DCNJT2KP9D"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'G-DCNJT2KP9D');
</script>
</head>
<body>
<!-- Navigation Bar-->
<nav class="navbar navbar-expand-lg navbar-light bg-light">
<div class="container-fluid pl-5">
<div class="row w-100 pl-4">
<div class="col">
<a class="" href="http://127.0.1.1:80">
<img src='assets/images/kaabil_logo.png' height="70" alt="">
</a>
</div>
<div class="col-5">
</div>
<div class="col-auto">
<!-- <a href="index.html"><img src='assets/images/gallery/wheat_fav.png' height="40px"></a> -->
<!-- <a href="index.html"><img src='assets/images/gallery/triticum_logo.png' height="75px"></a> -->
<a href="https://www.usu.edu/"><img src='assets/images/gallery/usu-logo1.png' height="70px"></a>
</div>
</div>
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</nav>
<nav class="container-fluid usu-bg pl-5">
<div class="row py-3 pl-5">
<div class="col-auto pt-2">
<a href="index.html" class="rk-nav-item"><i class="zmdi zmdi-home"></i> Home</a>
</div>
<div class="col-auto pt-2">
<div class="dropdown">
<div class="rk-nav-item dropdown-toggle" type="button" id="dropdownMenuButton" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
<i class="pe-7s-hammer"></i> Tools
</div>
<div class="dropdown-menu" aria-labelledby="dropdownMenuButton">
<a class="dropdown-item" href="interolog-wheat.html">Interactomics</a>
<a class="dropdown-item" href="searchTrustDB.html">Advanced search module</a>
<a class="dropdown-item" href="blast-submittion.html">BLAST search</a>
</div>
</div>
</div>
<div class="col-auto pt-2">
<div class="dropdown">
<div class="rk-nav-item dropdown-toggle" type="button" id="dropdownMenuButton" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
<i class="zmdi zmdi-format-list-bulleted"></i> Features
</div>
<div class="dropdown-menu" aria-labelledby="dropdownMenuButton">
<a class="dropdown-item" href="triticumHPI.php">Host-pathogen interactions</a>
<div class="dropdown-divider"></div>
<h6 class="ml-3" style="color:black"><b>Host</b></h6>
<a class="dropdown-item" href="transcriptionFactors.php">Transcription Factors</a>
<a class="dropdown-item" href="localizationHost.php">Subcellular Localization Annotations</a>
<a class="dropdown-item" href="geneontologyHost.php">Gene Ontology (GO) Term Annotations</a>
<a class="dropdown-item" href="domainsHost.php">Functional Domain Mappings (InterPro)</a>
<hr>
<h6 class="ml-3" style="color:black"><b>Pathogen</b></h6>
<a class="dropdown-item" href="ortholog.php"><i>Puccinia</i> species Orthologs</a>
<a class="dropdown-item" href="localization.php">Subcellular Localization Annotations</a>
<a class="dropdown-item" href="geneontology.php">Gene Ontology (GO) Term Annotations</a>
<a class="dropdown-item" href="domains.php">Functional Domain Mappings (InterPro)</a>
<a class="dropdown-item" href="effector.php">Effector Proteins</a>
<a class="dropdown-item" href="secretory.php">Secretory Proteins</a>
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</div>
</div>
</div>
<div class="col-auto pt-2">
<a href="genomicInformation.html" class="rk-nav-item"><i class="fa fa-database"></i> Datasets</a>
</div>
<div class="col-auto pt-2">
<a href="help.html" class="rk-nav-item"><i class="ion-document-text"></i> User guide </a>
</div>
<div class="col-auto ml-auto">
<form role="search" class="form-inline text-right">
<select class="form-control select2 mr-2" id="searchSelect">
<optgroup label="Puccinia species [Infecting Triticum]">
<option value="pug99">Puccinia graminis Ug99</option>
<option value="pgt21">Puccinia graminis 21-0</option>
</optgroup>
</select>
<input id="proteinTOsearch" placeholder="Search e.g: 'GMQ_00017T0'" class="form-control mr-2" type="text">
<a id="proteinSender" href=""><i class="fa fa-search" style="color:rgb(38, 92, 194)"></i></a>
</form>
</div>
</div>
</nav>
<!-- End Navigation Bar-->
<!-- ============================================================== -->
<!-- Start right Content here -->
<!-- ============================================================== -->
<div class="wrapper">
<div class="container">
<!-- Modal -->
<div class="modal fade" id="modal" tabindex="-1" role="dialog" aria-labelledby="ModalLabel" aria-hidden="true">
<div class="modal-dialog" role="document">
<div class="modal-content">
<div class="modal-header">
<h5 class="modal-title" id="exampleModalLabel">How this data was obtained?</h5>
<button type="button" class="close" data-dismiss="modal" aria-label="Close">
<span aria-hidden="true">×</span>
</button>
</div>
<div class="modal-body">
<p>This is a list of functional domains of <i>Puccinia</i> proteins, predicted using the InterProScan software package.</p>
</div>
<div class="modal-footer">
<button type="button" class="btn btn-secondary" data-dismiss="modal">Close</button>
</div>
</div>
</div>
</div>
<!-- Page-Title -->
<div class="row">
<div class="col-xl-12">
<h4 class="page-title">Functional Domain Mappings (InterPro) <i class="zmdi zmdi-info-outline" style="font-size: 25px" data-toggle="modal" data-target="#modal"></i></h4>
</div>
</div>
<!-- end row -->
<div class="col-12">
<div class="card-box">
<div class="row">
<div class="col-md-5" id="speciesSelect" >
<select class="form-control select2" id="pucciniaI" style="font-style: italic;">
<optgroup label="Puccinia species [Infecting Triticum]" style="font-style: italic;">
<option value="pug99">Puccinia graminis Ug99</option>
<option value="pgt21">Puccinia graminis 21-0</option>
</optgroup>
</select>
</div>
<div class="col-md-5" id="buttonSearch" >
<button type="button" class="btn btn-twitter waves-effect waves-light">
<span class="btn-label"><i class="zmdi zmdi-search"></i></span>Search
</button>
</div>
<div class="col-md-2" id="downloadDiv" hidden="true">
<a id="downloadQueryBtn" href="" target="_blank" class="btn btn-purple waves-effect waves-light"download> Download Result <i class="fa fa-download" style="font-size: 20px"></i></a>
</div>
</div>
<br>
<table id="tableDomains" class="table" cellspacing="0" width="100%" style="font-size: 14px">
<thead class='thead-dark'>
<tr role="row">
<th>Accession</th>
<th>Source</th>
<th>Domain</th>
<th>Description</th>
</tr>
</thead>
<tbody id="bodyTable">
</tbody>
</table>
</div>
</div>
<!-- end row -->
</div> <!-- container -->
<!-- Footer -->
<footer class="footer">
© 2022  |  <a href="https://www.usu.edu" target="_blank">Utah State University</a>  |  <a href="http://127.0.1.1:80" target="_blank">Kaundal Artificial Intelligence & Advanced Bioinformatics Laboratory</a>  |  <a href="https://www.psc.usu.edu" target="_blank">Department of Plants, Soils, and Climate</a>  |  <a href="https://www.biosystems.usu.edu" target="_blank">Center for Integrated BioSystems </a>
</footer>
<!-- End Footer -->
</div> <!-- End wrapper -->
<!-- jQuery -->
<script src="assets/js/jquery.min.js"></script>
<script src="assets/js/popper.min.js"></script><!-- Tether for Bootstrap -->
<script src="assets/js/bootstrap.min.js"></script>
<script src="assets/js/waves.js"></script>
<script src="assets/js/jquery.nicescroll.js"></script>
<script src="assets/plugins/switchery/switchery.min.js"></script>
<script src="assets/plugins/bootstrap-tagsinput/js/bootstrap-tagsinput.js"></script>
<script type="text/javascript" src="assets/plugins/multiselect/js/jquery.multi-select.js"></script>
<script type="text/javascript" src="assets/plugins/jquery-quicksearch/jquery.quicksearch.js"></script>
<script src="assets/plugins/select2/js/select2.full.min.js" type="text/javascript"></script>
<!-- file uploads js -->
<script src="assets/plugins/fileuploads/js/dropify.min.js"></script>
<!-- Modal-Effect -->
<script src="assets/plugins/custombox/js/custombox.min.js"></script>
<script src="assets/plugins/custombox/js/legacy.min.js"></script>
<!-- App js -->
<script src="assets/js/jquery.core.js"></script>
<script src="assets/js/jquery.app.js"></script>
<!-- Required datatable js -->
<script src="assets/plugins/datatables/jquery.dataTables.min.js"></script>
<script src="assets/plugins/datatables/dataTables.bootstrap4.min.js"></script>
<!-- Buttons examples -->
<script src="assets/plugins/datatables/dataTables.buttons.min.js"></script>
<script src="assets/plugins/datatables/buttons.bootstrap4.min.js"></script>
<script src="assets/plugins/datatables/jszip.min.js"></script>
<script src="assets/plugins/datatables/pdfmake.min.js"></script>
<script src="assets/plugins/datatables/vfs_fonts.js"></script>
<script src="assets/plugins/datatables/buttons.html5.min.js"></script>
<script src="assets/plugins/datatables/buttons.print.min.js"></script>
<script type="text/javascript">
$(document).ready(function() {
//Buttons examples
var table = $('#tableDomains').DataTable({});
var buttonSearch = document.getElementById("buttonSearch");
buttonSearch.click();
} );
$("#proteinTOsearch").on('input', function() {
var proteinName = $(this).val();
if($.trim(proteinName)!=""){
$('#proteinSender').attr('href', "proteinSearchQuery.php?protein="+$.trim(proteinName)+"&species="+$('select#searchSelect').val());
}
});
$("#searchSelect").change(function() {
$('#proteinSender').attr('href', "proteinSearchQuery.php?protein="+$.trim($('input#proteinTOsearch').val())+"&species="+$(this).val());
});
$("#buttonSearch").click(function() {
var formData = new FormData();
var namer = new Date().valueOf();
formData.append("namer", namer);
formData.append("species", $('select#pucciniaI').val());
var request = new XMLHttpRequest();
request.open("POST", "queryPathogenDom.php",true);
request.onload = function () {
if (request.readyState === request.DONE) {
if (request.status === 200) {
resultTask = request.response;
var queryResult = request.responseText;
var lines = queryResult.split("\\n");
var tableString = '';
example = lines[0].split("\t");
//console.log(example[0]);
for(i = 0; i< lines.length-1; i++){
record = lines[i].split("\t");
tableString = tableString + '<tr>';
tableString = tableString + '<td>'+record[0]+'</td>';
tableString = tableString + '<td>'+record[1]+'</td>';
tableString = tableString + '<td>'+record[2]+'</td>';
tableString = tableString + '<td>'+record[3]+'</td>';
tableString = tableString + '</tr>';
}
$('#tableDomains').DataTable().clear();
$('#tableDomains').DataTable().destroy();
document.getElementById('bodyTable').innerHTML = tableString;
$('#tableDomains').DataTable({"pageLength": 25});
var namer = lines[lines.length-1];
document.getElementById('downloadQueryBtn').href = "tmp/" + namer + "_OutputQuery.txt";
document.getElementById('downloadDiv').hidden = false;
}
}
};
request.send(formData);
});
</script>
</body>
</html>