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index.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="TRustDB: Protein-protein interaction Database for Stem Rust disease in Tritucm aestivum (Wheat).">
<meta name="author" content="Raghav Kataria">
<!-- App Favicon -->
<link rel="shortcut icon" href="assets/images/gallery/favicon.ico">
<!-- App title -->
<title>TRustDB</title>
<!-- Switchery css -->
<link href="assets/plugins/switchery/switchery.min.css" rel="stylesheet" />
<!-- Bootstrap CSS -->
<link href="assets/css/bootstrap.min.css" rel="stylesheet" type="text/css" />
<!-- App CSS -->
<link href="assets/css/style.css" rel="stylesheet" type="text/css" />
<!-- Modernizr js -->
<script src="assets/js/modernizr.min.js"></script>
<style>
ul li {
margin: 5px;
display: inline-block;
}
ul li a img {
width: 200px;
height: 200px;
display: block;
}
ul li a:hover img {
transform: scale(1.75);
box-shadow: 0 0 5px rgba(0, 0, 0, 0.5);
}
</style>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=G-DCNJT2KP9D"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'G-DCNJT2KP9D');
</script>
</head>
<body>
<!-- Navigation Bar-->
<nav class="navbar navbar-expand-lg navbar-light bg-light">
<div class="container-fluid pl-5">
<div class="row w-100 pl-4">
<div class="col">
<a class="" href="http://127.0.1.1:80">
<img src='assets/images/kaabil_logo.png' height="70" alt="">
</a>
</div>
<div class="col-5">
</div>
<div class="col-auto">
<a href="https://www.usu.edu/"><img src='assets/images/gallery/usu-logo1.png' height="70px"></a>
</div>
</div>
</div>
</nav>
<nav class="container-fluid usu-bg pl-5">
<div class="row py-3 pl-5">
<div class="col-auto pt-2">
<a href="index.html" class="rk-nav-item"><i class="zmdi zmdi-home"></i> Home</a>
</div>
<div class="col-auto pt-2">
<div class="dropdown">
<div class="rk-nav-item dropdown-toggle" type="button" id="dropdownMenuButton" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
<i class="pe-7s-hammer"></i> Tools
</div>
<div class="dropdown-menu" aria-labelledby="dropdownMenuButton">
<a class="dropdown-item" href="interolog-wheat.html">Interactomics</a>
<a class="dropdown-item" href="searchTrustDB.html">Advanced search module</a>
<a class="dropdown-item" href="blast-submittion.html">BLAST search</a>
</div>
</div>
</div>
<div class="col-auto pt-2">
<div class="dropdown">
<div class="rk-nav-item dropdown-toggle" type="button" id="dropdownMenuButton" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
<i class="zmdi zmdi-format-list-bulleted"></i> Features
</div>
<div class="dropdown-menu" aria-labelledby="dropdownMenuButton">
<a class="dropdown-item" href="triticumHPI.php">Host-pathogen interactions</a>
<div class="dropdown-divider"></div>
<h6 class="ml-3" style="color:black"><b>Host</b></h6>
<a class="dropdown-item" href="transcriptionFactors.php">Transcription Factors</a>
<a class="dropdown-item" href="localizationHost.php">Subcellular Localization Annotations</a>
<a class="dropdown-item" href="geneontologyHost.php">Gene Ontology (GO) Term Annotations</a>
<a class="dropdown-item" href="domainsHost.php">Functional Domain Mappings (InterPro)</a>
<hr>
<h6 class="ml-3" style="color:black"><b>Pathogen</b></h6>
<a class="dropdown-item" href="ortholog.php"><i>Puccinia</i> species Orthologs</a>
<a class="dropdown-item" href="localization.php">Subcellular Localization Annotations</a>
<a class="dropdown-item" href="geneontology.php">Gene Ontology (GO) Term Annotations</a>
<a class="dropdown-item" href="domains.php">Functional Domain Mappings (InterPro)</a>
<a class="dropdown-item" href="effector.php">Effector Proteins</a>
<a class="dropdown-item" href="secretory.php">Secretory Proteins</a>
<a class="dropdown-item" href="effectors.php">Effector and Secretory Proteins</a>
</div>
</div>
</div>
<div class="col-auto pt-2">
<a href="genomicInformation.html" class="rk-nav-item"><i class="fa fa-database"></i> Datasets</a>
</div>
<div class="col-auto pt-2">
<!-- <a href="help.html" class="rk-nav-item"><i class="ion-help-circled"></i> Help</a> -->
<a href="help.html" class="rk-nav-item"><i class="ion-document-text"></i> User Guide </a>
</div>
<div class="col-auto ml-auto">
<form role="search" class="form-inline text-right">
<select class="form-control select2 mr-2" id="searchSelect">
<optgroup label="Puccinia species [Infecting Triticum]">
<option value="pug99">Puccinia graminis Ug99</option>
<option value="pgt21">Puccinia graminis 21-0</option>
</optgroup>
</select>
<input id="proteinTOsearch" placeholder="Search e.g: 'GMQ_00017T0'" class="form-control mr-2" type="text">
<a id="proteinSender" href=""><i class="fa fa-search" style="color:rgb(38, 92, 194)"></i></a>
</form>
</div>
</div>
</nav>
<!-- End Navigation Bar-->
<!-- ==============================================================
<!-- Start right Content here -->
<!-- ============================================================== -->
<div class="wrapper">
<div class="container">
<!-- Page-Title -->
<div class="row">
<div class="col-sm-12">
<h4 class="page-title">TRustDB: Host-Pathogen Interaction Database of Stem Rust disease in <i>Triticum aestivum</i></h4>
</div>
</div>
<div class="row">
<div class="col-xs-12 col-lg-12 col-xl-8">
<div class="card m-b-20">
<div class="card-body">
<ul>
<li><a href="#"><img src="assets/images/gallery/1.jpg" height="175px" class="rk-img"></a></li>
<li><a href="#"><img src="assets/images/gallery/2.jpg" height="175px" class="rk-img"></a></li>
<li><a href="#"><img src="assets/images/gallery/3.png" height="175px" class="rk-img"></a></li>
</ul>
<hr>
<h5 class="card-title">Database Overview</h5>
<p style="font-size:16px" class="card-text">
Wheat (<i>Triticum aestivum</i>), the most widely cultivated crop in the world, ranks third and counts to around 35% of the total grains produced around the globe. Recently, the occurence of stem rust in wheat has affected the grain yield and quality of the crop to around 60-70%, thus being a major threat to the agriculture industry, worldwide. The disease is caused by two races of <i>Puccinia graminis</i>: 'Ug99' and '21-0'.
</p>
<p style="font-size:16px" class="card-text">
TRustDB, a database for <i>Triticum aestivum</i> -<i>Puccinia</i> species protein-protein interactions, provides valuable information about the <i>Puccinia</i> species, which includes various functional protein annotations of the proteins involved in the interactions.
</p>
</div>
</div>
</div>
<!-- end col-->
<div class="col-xs-12 col-lg-12 col-xl-4">
<div class="card-box">
<!-- <h5 class="card-title">Species</h5> -->
<table class="tablesaw m-t-20 table m-b-0" data-tablesaw-mode="stack">
<thead>
<tr>
<th scope="col" data-tablesaw-sortable-col data-tablesaw-priority="persist">Host species</th>
</tr>
</thead>
<tbody>
<tr>
<td><i>Triticum aestivum</i></td>
</tr>
</tbody>
<thead>
<tr>
<th scope="col" data-tablesaw-sortable-col data-tablesaw-priority="persist">Pathogen species</th>
</tr>
</thead>
<tbody>
<tr>
<td><i>Puccinia graminis</i> isolate Ug99 (<i>Pgt</i> Ug99)</td>
</tr>
<tr>
<td><i>Puccinia graminis</i> isolate 21-0 (<i>Pgt</i> 21-0)</td>
</tr>
</tbody>
</table>
<a href="genomicInformation.html" class="btn btn-primary">Download the proteomes of the species</a>
</div>
</div>
<!-- end col-->
</div>
<!-- end row -->
<div class="row">
<div class="col-xs-12 col-md-6 col-lg-6 col-xl-4">
<div class="card-box tilebox-one">
<h6 class="text-muted text-uppercase m-b-20">Protein sequences</h6>
<h3 class="m-b-20"><span class="counter">162,601</span> <span class="subtext">(<i>T. aestivum</i>: 104,701 | <i>Pgt</i> Ug99: 22,524 | <i>Pgt</i> 21-0: 35,376) </span></h3>
<button id="doSearchBlast" type="button" class="btn btn-purple btn-rounded waves-effect waves-light">BLAST</button>
</div>
</div>
<div class="col-xs-12 col-md-6 col-lg-6 col-xl-2">
<div class="card-box tilebox-one">
<h6 class="text-muted text-uppercase m-b-20">Effector proteins</h6>
<h3 class="m-b-20"> <span class="counter">11,500</span> <span class="subtext">(<i>Pgt</i> Ug99: 4,330 | <i>Pgt</i> 21-0: 7,170)</span></h3>
<button id="doPredicted" type="button" class="btn btn-primary btn-rounded waves-effect waves-light">Search</button>
</div>
</div>
<div class="col-xs-12 col-md-6 col-lg-6 col-xl-2">
<div class="card-box tilebox-one">
<h6 class="text-muted text-uppercase m-b-20">Secretory proteins</h6>
<h3 class="m-b-20"><span class="counter">7,451</span> <span class="subtext">(<i>Pgt</i> Ug99: 2,193 | <i>Pgt</i> 21-0: 5,258)</span></h3>
<button id="doMined" type="button" class="btn btn-primary btn-rounded waves-effect waves-light">Search</button>
</div>
</div>
<div class="col-xs-12 col-md-6 col-lg-6 col-xl-4">
<div class="card-box tilebox-one">
<h6 class="text-muted text-uppercase m-b-20">Host-pathogen interactome comparison</h6>
<h6 class="m-b-20" style="padding-top: 37px"></h6>
<button id="doHPI" type="button" class="btn btn-success btn-rounded waves-effect waves-light">Explore the tool</button>
</div>
</div>
</div>
<!-- end row -->
</div> <!-- container -->
<!-- Footer -->
<footer class="footer">
© 2022  |  <a href="https://www.usu.edu" target="_blank">Utah State University</a>  |  <a href="http://127.0.1.1:80" target="_blank">Kaundal Artificial Intelligence & Advanced Bioinformatics Laboratory</a>  |  <a href="https://www.psc.usu.edu" target="_blank">Department of Plants, Soils, and Climate</a>  |  <a href="https://www.biosystems.usu.edu" target="_blank">Center for Integrated BioSystems </a>
</footer>
<!-- End Footer -->
</div> <!-- End wrapper -->
<!-- jQuery -->
<script src="assets/js/jquery.min.js"></script>
<script src="assets/js/popper.min.js"></script><!-- Tether for Bootstrap -->
<script src="assets/js/bootstrap.min.js"></script>
<script src="assets/js/waves.js"></script>
<script src="assets/js/jquery.nicescroll.js"></script>
<script src="assets/plugins/switchery/switchery.min.js"></script>
<!-- Counter Up -->
<script src="assets/plugins/waypoints/lib/jquery.waypoints.min.js"></script>
<script src="assets/plugins/counterup/jquery.counterup.min.js"></script>
<!-- App js -->
<script src="assets/js/jquery.core.js"></script>
<script src="assets/js/jquery.app.js"></script>
<script>
$("#doSearchBlast").click(function() {
window.location.href = "blast-submittion.html";
});
$("#doPredicted").click(function() {
window.location.href = "effector.php";
});
$("#doMined").click(function() {
window.location.href = "secretory.php";
});
$("#doHPI").click(function() {
window.location.href = "interolog-wheat.html";
});
$("#proteinTOsearch").on('input', function() {
var proteinName = $(this).val();
console.log(proteinName);
if($.trim(proteinName)!=""){
$('#proteinSender').attr('href', "proteinSearchQuery.php?protein="+$.trim(proteinName)+"&species="+$('select#searchSelect').val());
}
});
$("#searchSelect").change(function() {
$('#proteinSender').attr('href', "proteinSearchQuery.php?protein="+$.trim($('input#proteinTOsearch').val())+"&species="+$(this).val());
});
</script>
</body>
</html>