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paths.py
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paths.py
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import os
code_dir = os.path.dirname(os.path.realpath(__file__))
if os.name == "posix":
root = "/media/emily/Seagate Backup Plus Drive/phd-thesis"
else:
root = code_dir
data_dir = os.path.abspath(os.path.join(root, "data"))
cache_dir = os.path.abspath(os.path.join(root, "cache"))
plots_dir = os.path.abspath(os.path.join(root, "plots"))
info_dir = os.path.abspath(os.path.join(code_dir, "info"))
thesis_dir = os.path.abspath(os.path.join(code_dir, os.pardir, "thesis"))
def recording_dir(info):
return os.path.join(data_dir, info.rat_id, f"{info.session}_recording")
def position_file(info):
return os.path.join(recording_dir(info), f"{info.session}-VT1.nvt")
def event_file(info):
return os.path.join(recording_dir(info), f"{info.session}-Events.nev")
def lfp_swr_file(info):
return os.path.join(
recording_dir(info), f"{info.session}-{info.lfp_swr_suffix}.ncs"
)
def lfp_theta_file(info):
return os.path.join(
recording_dir(info), f"{info.session}-{info.lfp_theta_suffix}.ncs"
)
def swr_file(info):
return os.path.join(recording_dir(info), f"{info.session}-SWRcandidates-ext.mat")
def position_csv_file(info):
return os.path.join(
cache_dir, f"ind-{info.session_id}", f"{info.session}-position.csv"
)
def cached_file(group, key):
assert isinstance(key, str)
return os.path.join(cache_dir, group, f"{key}.pkl")
def plot_file(*path_args):
path = os.path.join(plots_dir, *path_args)
return path
def thesis_image(filename):
return os.path.join(thesis_dir, "images", filename)
def thesis_tex(filename):
return os.path.join(thesis_dir, "generated", filename)
def plot_dir(*path_args, mkdir=False):
path = os.path.join(plots_dir, *path_args)
if mkdir:
os.makedirs(path, exist_ok=True)
return path