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Describe the bug
Building the temporai package from pip or from github fails as catboost is required.
This is probably linked to #72 were the catboost dependency should have been removed and to catboost/catboost#2371 (comment)
Platform:
macOS 13.5
python 3.11.5
To Reproduce pip install temporai
or pip install "temporai @ git+https://github.com/vanderschaarlab/temporai@daa4af2e3943e5639098a4459464012c007245a3"
Expected behavior
Build should not fail, and catboost should probably not be required.
Results
temporai build fails.
Collecting catboost>=1.0.5 (from hyperimpute>=0.1.17->temporai@ git+https://github.com/vanderschaarlab/temporai@daa4af2e3943e5639098a4459464012c007245a3)
Using cached catboost-1.2.2.tar.gz (60.1 MB)
```
Building wheel for catboost (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for catboost (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [218 lines of output]
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-cpython-311
creating build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/monoforest.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/plot_helpers.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/metrics.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/version.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/text_processing.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/datasets.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/init.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/core.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/dev_utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
creating build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/init.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/metrics_plotter.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/ipythonwidget.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/callbacks.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
creating build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/catboost_evaluation.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_fold_model.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_readers.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/log_config.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_splitter.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/init.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/execution_case.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_fold_storage.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/factor_utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/evaluation_result.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_fold_models_handler.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
running build_ext
Buildling _catboost with cmake and ninja
target_platform=darwin-x86_64. Building targets _catboost with PIC
Running "cmake /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src -B /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311 -G Ninja -DCMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src/build/toolchains/clang.toolchain --log-level=VERBOSE -DCMAKE_POSITION_INDEPENDENT_CODE=On -DCATBOOST_COMPONENTS=python-package -DCMAKE_OSX_DEPLOYMENT_TARGET=11.0 -DHAVE_CUDA=no -DPython3_ROOT_DIR=/Users/jk1/opt/anaconda3/envs/treatment_effects"
-- The C compiler identification is AppleClang 14.0.3.14030022
-- The CXX compiler identification is AppleClang 14.0.3.14030022
-- The ASM compiler identification is Clang
-- Found assembler: /Library/Developer/CommandLineTools/usr/bin/clang
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /Users/jk1/opt/anaconda3/envs/treatment_effects/bin/python3.1 (found version "3.11.5") found components: Interpreter
-- CMAKE_C_FLAGS = " -fexceptions -fno-common -fcolor-diagnostics -faligned-allocation -fdebug-default-version=4 -ffunction-sections -fdata-sections -Wall -Wextra -Wno-parentheses -Wno-implicit-const-int-float-conversion -Wno-unknown-warning-option -pipe -D_THREAD_SAFE -D_PTHREADS -D_REENTRANT -D_LARGEFILE_SOURCE -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__LONG_LONG_SUPPORTED -DLIBCXX_BUILDING_LIBCXXRT -D_FILE_OFFSET_BITS=64 -m64 -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mpopcnt -mcx16 -DSSE_ENABLED=1 -DSSE3_ENABLED=1 -DSSSE3_ENABLED=1 -DSSE41_ENABLED=1 -DSSE42_ENABLED=1 -DPOPCNT_ENABLED=1 -DCX16_ENABLED=1"
-- CMAKE_CXX_FLAGS = " -fexceptions -fno-common -fcolor-diagnostics -faligned-allocation -fdebug-default-version=4 -ffunction-sections -fdata-sections -Wall -Wextra -Wno-parentheses -Wno-implicit-const-int-float-conversion -Wno-unknown-warning-option -pipe -D_THREAD_SAFE -D_PTHREADS -D_REENTRANT -D_LARGEFILE_SOURCE -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__LONG_LONG_SUPPORTED -DLIBCXX_BUILDING_LIBCXXRT -D_FILE_OFFSET_BITS=64 -m64 -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mpopcnt -mcx16 -Woverloaded-virtual -Wimport-preprocessor-directive-pedantic -Wno-undefined-var-template -Wno-return-std-move -Wno-defaulted-function-deleted -Wno-pessimizing-move -Wno-deprecated-anon-enum-enum-conversion -Wno-deprecated-enum-enum-conversion -Wno-deprecated-enum-float-conversion -Wno-ambiguous-reversed-operator -Wno-deprecated-volatile -DSSE_ENABLED=1 -DSSE3_ENABLED=1 -DSSSE3_ENABLED=1 -DSSE41_ENABLED=1 -DSSE42_ENABLED=1 -DPOPCNT_ENABLED=1 -DCX16_ENABLED=1"
-- Conan: checking conan executable
-- Conan: Found program /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/bin/conan
-- Conan: Version found Conan version 1.59.0
-- Conan executing: /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/bin/conan install /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src --remote conancenter --install-folder /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311 --build missing --env CONAN_CMAKE_GENERATOR=Ninja --settings build_type=Release --settings compiler=apple-clang --settings compiler.version=14.0 --settings compiler.libcxx=libc++ --settings compiler.cppstd=20 --conf tools.cmake.cmaketoolchain:generator=Ninja
Configuration:
[settings]
arch=x86_64
arch_build=x86_64
build_type=Release
compiler=apple-clang
compiler.cppstd=20
compiler.libcxx=libc++
compiler.version=14.0
os=Macos
os_build=Macos
[options]
[build_requires]
[env]
CONAN_CMAKE_GENERATOR=Ninja
[conf]
tools.cmake.cmaketoolchain:generator=Ninja
Version ranges solved
Version range '>=1.2.11 <2' required by 'pcre/8.45' resolved to 'zlib/1.3' in local cache
conanfile.txt: Installing package
Requirements
libiconv/1.15 from 'conancenter' - Cache
openssl/1.1.1t from 'conancenter' - Cache
Packages
libiconv/1.15:e1ef30a7ac2ff8c218173fdf49ec961a5c046a36 - Cache
openssl/1.1.1t:a319f556f93546f2dff1b70922784b70e7cba919 - Cache
Build requirements
bzip2/1.0.8 from 'conancenter' - Cache
pcre/8.45 from 'conancenter' - Cache
ragel/6.10 from 'conancenter' - Cache
swig/4.0.2 from 'conancenter' - Cache
yasm/1.3.0 from 'conancenter' - Cache
zlib/1.3 from 'conancenter' - Cache
Build requirements packages
bzip2/1.0.8:b9b85a7c8f543b96385e1da9e174853f1fb08e0c - Cache
pcre/8.45:842afe377248eac66b64b538531df2b005d57959 - Cache
ragel/6.10:801752c0480319b8e090188c566245a78e9abcf4 - Cache
swig/4.0.2:099d7b9cd06e9bd11e92b9a2ddf3b29cd986fdcb - Cache
yasm/1.3.0:801752c0480319b8e090188c566245a78e9abcf4 - Cache
zlib/1.3:a319f556f93546f2dff1b70922784b70e7cba919 - Cache
Installing (downloading, building) binaries...
bzip2/1.0.8: Already installed!
libiconv/1.15: Already installed!
openssl/1.1.1t: Already installed!
ragel/6.10: Already installed!
ragel/6.10: Appending PATH environment variable: /Users/jk1/.conan/data/ragel/6.10/_/_/package/801752c0480319b8e090188c566245a78e9abcf4/bin
yasm/1.3.0: Already installed!
yasm/1.3.0: Appending PATH environment variable: /Users/jk1/.conan/data/yasm/1.3.0/_/_/package/801752c0480319b8e090188c566245a78e9abcf4/bin
zlib/1.3: Already installed!
pcre/8.45: Already installed!
swig/4.0.2: Already installed!
swig/4.0.2: Appending PATH environment variable: /Users/jk1/.conan/data/swig/4.0.2/_/_/package/099d7b9cd06e9bd11e92b9a2ddf3b29cd986fdcb/bin
conanfile.txt: Applying build-requirement: ragel/6.10
conanfile.txt: Applying build-requirement: swig/4.0.2
conanfile.txt: Applying build-requirement: yasm/1.3.0
conanfile.txt: Applying build-requirement: pcre/8.45
conanfile.txt: Applying build-requirement: bzip2/1.0.8
conanfile.txt: Applying build-requirement: zlib/1.3
conanfile.txt: Generator cmake_find_package created Findragel.cmake
conanfile.txt: Generator cmake_find_package created FindSWIG.cmake
conanfile.txt: Generator cmake_find_package created Findyasm.cmake
conanfile.txt: Generator cmake_find_package created FindIconv.cmake
conanfile.txt: Generator cmake_find_package created FindOpenSSL.cmake
conanfile.txt: Generator cmake_find_package created FindPCRE.cmake
conanfile.txt: Generator cmake_find_package created FindBZip2.cmake
conanfile.txt: Generator cmake_find_package created FindZLIB.cmake
conanfile.txt: Generator cmake_paths created conan_paths.cmake
conanfile.txt: Generator txt created conanbuildinfo.txt
conanfile.txt: Aggregating env generators
conanfile.txt: Generated conaninfo.txt
conanfile.txt: Generated graphinfo
conanfile.txt imports(): Copied 434 '.i' files
conanfile.txt imports(): Copied 273 '.swg' files
conanfile.txt imports(): Copied 1 '.swig' file: Makefile.swig
conanfile.txt imports(): Copied 2 '.ml' files: swig.ml, swigp4.ml
conanfile.txt imports(): Copied 1 '.pl' file: Makefile.pl
conanfile.txt imports(): Copied 6 files
conanfile.txt imports(): Copied 1 '.rb' file: extconf.rb
conanfile.txt imports(): Copied 1 '.h' file: noembed.h
conanfile.txt imports(): Copied 1 '.scm' file: common.scm
conanfile.txt imports(): Copied 1 '.mli' file: swig.mli
conanfile.txt imports(): Copied 1 '.hpp' file: octheaders.hpp
CMake Error at /usr/local/Cellar/cmake/3.21.3/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES
Development Development.Module Development.Embed)
Call Stack (most recent call first):
/usr/local/Cellar/cmake/3.21.3/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
/usr/local/Cellar/cmake/3.21.3/share/cmake/Modules/FindPython/Support.cmake:3166 (find_package_handle_standard_args)
/usr/local/Cellar/cmake/3.21.3/share/cmake/Modules/FindPython3.cmake:485 (include)
catboost/python-package/catboost/CMakeLists.darwin-x86_64.txt:9 (find_package)
catboost/python-package/catboost/CMakeLists.txt:20 (include)
-- Configuring incomplete, errors occurred!
See also "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311/CMakeFiles/CMakeOutput.log".
See also "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311/CMakeFiles/CMakeError.log".
Traceback (most recent call last):
File "/Users/jk1/opt/anaconda3/envs/treatment_effects/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/Users/jk1/opt/anaconda3/envs/treatment_effects/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/jk1/opt/anaconda3/envs/treatment_effects/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 434, in build_wheel
return self._build_with_temp_dir(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 419, in _build_with_temp_dir
self.run_setup()
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 507, in run_setup
super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 341, in run_setup
exec(code, locals())
File "<string>", line 731, in <module>
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/__init__.py", line 103, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
^^^^^^^^^^^^^^^^^^
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "<string>", line 397, in run
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/wheel/bdist_wheel.py", line 364, in run
self.run_command("build")
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "<string>", line 332, in run
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run
self.run_command(cmd_name)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "<string>", line 444, in run
File "<string>", line 462, in build_with_cmake_and_ninja
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src/build/build_native.py", line 517, in build
cmd_runner.run(cmake_cmd, env=build_environ)
File "/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src/build/build_native.py", line 164, in run
subprocess.run(cmd, check=True, **subprocess_run_kwargs)
File "/Users/jk1/opt/anaconda3/envs/treatment_effects/lib/python3.11/subprocess.py", line 571, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['cmake', '/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src', '-B', '/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311', '-G', 'Ninja', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_TOOLCHAIN_FILE=/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src/build/toolchains/clang.toolchain', '--log-level=VERBOSE', '-DCMAKE_POSITION_INDEPENDENT_CODE=On', '-DCATBOOST_COMPONENTS=python-package', '-DCMAKE_OSX_DEPLOYMENT_TARGET=11.0', '-DHAVE_CUDA=no', '-DPython3_ROOT_DIR=/Users/jk1/opt/anaconda3/envs/treatment_effects']' returned non-zero exit status 1.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for catboost
Successfully built temporai
Failed to build catboost
ERROR: Could not build wheels for catboost, which is required to install pyproject.toml-based projects
</details>
The text was updated successfully, but these errors were encountered:
Thank you for reporting this! We will investigate.
This may also be related to the fact that you are using Python 3.11 (which would affect dependencies), which we do not yet fully support. Could you try with Python 3.10 to see if that resolves the issue?
Describe the bug
Building the temporai package from pip or from github fails as catboost is required.
This is probably linked to #72 were the catboost dependency should have been removed and to catboost/catboost#2371 (comment)
Platform:
To Reproduce
pip install temporai
or
pip install "temporai @ git+https://github.com/vanderschaarlab/temporai@daa4af2e3943e5639098a4459464012c007245a3"
Expected behavior
Build should not fail, and catboost should probably not be required.
Results
temporai build fails.
× Building wheel for catboost (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [218 lines of output]
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-cpython-311
creating build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/monoforest.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/plot_helpers.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/metrics.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/version.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/text_processing.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/datasets.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/init.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/core.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
copying catboost/dev_utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost
creating build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/init.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/metrics_plotter.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/ipythonwidget.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
copying catboost/widget/callbacks.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/widget
creating build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/catboost_evaluation.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_fold_model.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_readers.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/log_config.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_splitter.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/init.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/execution_case.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_fold_storage.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/factor_utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/utils.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/evaluation_result.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
copying catboost/eval/_fold_models_handler.py -> build/lib.macosx-10.9-x86_64-cpython-311/catboost/eval
running build_ext
Buildling _catboost with cmake and ninja
target_platform=darwin-x86_64. Building targets _catboost with PIC
Running "cmake /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src -B /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311 -G Ninja -DCMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=/private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src/build/toolchains/clang.toolchain --log-level=VERBOSE -DCMAKE_POSITION_INDEPENDENT_CODE=On -DCATBOOST_COMPONENTS=python-package -DCMAKE_OSX_DEPLOYMENT_TARGET=11.0 -DHAVE_CUDA=no -DPython3_ROOT_DIR=/Users/jk1/opt/anaconda3/envs/treatment_effects"
-- The C compiler identification is AppleClang 14.0.3.14030022
-- The CXX compiler identification is AppleClang 14.0.3.14030022
-- The ASM compiler identification is Clang
-- Found assembler: /Library/Developer/CommandLineTools/usr/bin/clang
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /Users/jk1/opt/anaconda3/envs/treatment_effects/bin/python3.1 (found version "3.11.5") found components: Interpreter
-- CMAKE_C_FLAGS = " -fexceptions -fno-common -fcolor-diagnostics -faligned-allocation -fdebug-default-version=4 -ffunction-sections -fdata-sections -Wall -Wextra -Wno-parentheses -Wno-implicit-const-int-float-conversion -Wno-unknown-warning-option -pipe -D_THREAD_SAFE -D_PTHREADS -D_REENTRANT -D_LARGEFILE_SOURCE -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__LONG_LONG_SUPPORTED -DLIBCXX_BUILDING_LIBCXXRT -D_FILE_OFFSET_BITS=64 -m64 -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mpopcnt -mcx16 -DSSE_ENABLED=1 -DSSE3_ENABLED=1 -DSSSE3_ENABLED=1 -DSSE41_ENABLED=1 -DSSE42_ENABLED=1 -DPOPCNT_ENABLED=1 -DCX16_ENABLED=1"
-- CMAKE_CXX_FLAGS = " -fexceptions -fno-common -fcolor-diagnostics -faligned-allocation -fdebug-default-version=4 -ffunction-sections -fdata-sections -Wall -Wextra -Wno-parentheses -Wno-implicit-const-int-float-conversion -Wno-unknown-warning-option -pipe -D_THREAD_SAFE -D_PTHREADS -D_REENTRANT -D_LARGEFILE_SOURCE -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__LONG_LONG_SUPPORTED -DLIBCXX_BUILDING_LIBCXXRT -D_FILE_OFFSET_BITS=64 -m64 -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mpopcnt -mcx16 -Woverloaded-virtual -Wimport-preprocessor-directive-pedantic -Wno-undefined-var-template -Wno-return-std-move -Wno-defaulted-function-deleted -Wno-pessimizing-move -Wno-deprecated-anon-enum-enum-conversion -Wno-deprecated-enum-enum-conversion -Wno-deprecated-enum-float-conversion -Wno-ambiguous-reversed-operator -Wno-deprecated-volatile -DSSE_ENABLED=1 -DSSE3_ENABLED=1 -DSSSE3_ENABLED=1 -DSSE41_ENABLED=1 -DSSE42_ENABLED=1 -DPOPCNT_ENABLED=1 -DCX16_ENABLED=1"
-- Conan: checking conan executable
-- Conan: Found program /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/bin/conan
-- Conan: Version found Conan version 1.59.0
-- Conan executing: /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-build-env-itfn3d2q/overlay/bin/conan install /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/catboost_all_src --remote conancenter --install-folder /private/var/folders/9v/1s329cwj32jc2kkx24p8jp980000gp/T/pip-install-pvf83pvv/catboost_978ae68fc7434fc3857f456b847dec21/build/temp.macosx-10.9-x86_64-cpython-311 --build missing --env CONAN_CMAKE_GENERATOR=Ninja --settings build_type=Release --settings compiler=apple-clang --settings compiler.version=14.0 --settings compiler.libcxx=libc++ --settings compiler.cppstd=20 --conf tools.cmake.cmaketoolchain:generator=Ninja
Configuration:
[settings]
arch=x86_64
arch_build=x86_64
build_type=Release
compiler=apple-clang
compiler.cppstd=20
compiler.libcxx=libc++
compiler.version=14.0
os=Macos
os_build=Macos
[options]
[build_requires]
[env]
CONAN_CMAKE_GENERATOR=Ninja
[conf]
tools.cmake.cmaketoolchain:generator=Ninja
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for catboost
Successfully built temporai
Failed to build catboost
ERROR: Could not build wheels for catboost, which is required to install pyproject.toml-based projects
The text was updated successfully, but these errors were encountered: