the oldest indexing compressor ?

[maximilianh]

Hi Dave,

about the "similar tools" section on this page, you may want to add "pgzip" ?
https://github.com/vasi/pixz

in genomics, the indexing compressor pgzip has been used for around 15 years. Millions of files on the internet use it, it allows streaming of sequencing reads and variant files in vcf.gz so you can load only a part of the file over HTTP, only the one for the chromosome location that you're currently viewing. Browsers like UCSC, Ensembl or NCBI support this format, as well as standalone apps like IGV. Of the indexing compressors, pgzip may be the one with the largest adoption and oldest history?

[vasi]

There's a few things called "pgzip" out there if I google. Which one did you have in mind?

[maximilianh]

Sorry bgzip! http://www.htslib.org/doc/bgzip.html

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On Sat, Jul 6, 2024 at 07:11 Dave Vasilevsky ***@***.***> wrote: There's a few things called "pgzip" out there if I google. Which one did you have in mind? — Reply to this email directly, view it on GitHub <#119 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AACL4TPKMEQQTOI7DOO6TU3ZK54A7AVCNFSM6AAAAABKMXA2MSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMJRGY2DKNZSGU> . You are receiving this because you authored the thread.Message ID: ***@***.***>