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Error in update.md #30

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jma7 opened this issue Dec 10, 2019 · 1 comment

jma7 commented Dec 10, 2019

In /Documentation/vtools_commands/update.md

% perl -S annotate_variation.pl ann.in humandb/ --buildver hg38

NOTICE: The --geneanno operation is set to ON by default
NOTICE: Output files are written to ann.in.variant_function, ann.in.exonic_variant_function
Error: The gene annotation database humandb/hg38_refGene.txt does not exist. Please use 'annotate_variation.pl --downdb refGene humandb -build hg38' to download the database.

The text was updated successfully, but these errors were encountered:

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jma7 commented Dec 17, 2019

vtools select variant 'dbSNP.func = "intron"' --output dbSNP.name dbSNP.func > dbSNP.info

func field is not in dbSNP-hg38.

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