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Molecular Investigation of Ageing via Transcriptional Drift

Tong Shu Li (Su Lab) and Michael Petrascheck (Lab Website)

Installing Dependencies

  1. Create a virtual environment: pyvenv venv
  2. Install dependencies with pip: pip3 install -r requirements.txt

Running Notebooks

  1. Start the virtual environment: source venv/bin/activate
  2. Start the Jupyter server: jupyter notebook

Directory Contents

  • data: Data storage directory. Also contains simple scripts used to clean the raw data.
  • src: Frequently used functions and utilities.
  • analysis: Jupyter notebooks containing analyses of the data.