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!_TAG_FILE_FORMAT 2 /extended format; --format=1 will not append ;" to lines/
!_TAG_FILE_SORTED 1 /0=unsorted, 1=sorted, 2=foldcase/
!_TAG_PROGRAM_AUTHOR Darren Hiebert /[email protected]/
!_TAG_PROGRAM_NAME Exuberant Ctags //
!_TAG_PROGRAM_URL http://ctags.sourceforge.net /official site/
!_TAG_PROGRAM_VERSION 5.8 //
os py/sbsearch.py /^import os, sys$/;" i
sys py/sbsearch.py /^import os, sys$/;" i
occam py/sbsearch.py /^import occam$/;" i
time py/sbsearch.py /^import time$/;" i
resource py/sbsearch.py /^import resource$/;" i
ocUtils py/sbsearch.py /^from ocutils import ocUtils$/;" i
swidth py/sbsearch.py /^ swidth = sys.argv[2]$/;" v
slevels py/sbsearch.py /^ slevels = sys.argv[3]$/;" v
swidth py/sbsearch.py /^ swidth = 3;$/;" v
slevels py/sbsearch.py /^ slevels = 7;$/;" v
filter py/sbsearch.py /^ filter = sys.argv[4]$/;" v
filter py/sbsearch.py /^ filter = "loopless"$/;" v
util py/sbsearch.py /^util = ocUtils("SB") # create a variable-based manager$/;" v
t1 py/sbsearch.py /^t1 = time.time()$/;" v
t2 py/sbsearch.py /^t2 = time.time()$/;" v
t3 py/sbsearch.py /^t3 = time.time()$/;" v
os py/fit.py /^import os, sys$/;" i
sys py/fit.py /^import os, sys$/;" i
occam py/fit.py /^import occam$/;" i
time py/fit.py /^import time$/;" i
ocUtils py/fit.py /^from ocutils import ocUtils$/;" i
oc py/fit.py /^oc = ocUtils("VB")$/;" v
t1 py/fit.py /^t1 = time.time()$/;" v
t2 py/fit.py /^t2 = time.time()$/;" v
t3 py/fit.py /^t3 = time.time()$/;" v
pdb py/sbfit.py /^import pdb$/;" i
os py/sbfit.py /^import os, sys$/;" i
sys py/sbfit.py /^import os, sys$/;" i
occam py/sbfit.py /^import occam$/;" i
time py/sbfit.py /^import time$/;" i
ocUtils py/sbfit.py /^from ocutils import ocUtils$/;" i
oc py/sbfit.py /^oc = ocUtils("SB")$/;" v
t1 py/sbfit.py /^t1 = time.time()$/;" v
t2 py/sbfit.py /^t2 = time.time()$/;" v
t3 py/sbfit.py /^t3 = time.time()$/;" v
sys py/ocutils.py /^import sys, re, occam, time, heapq, ocGraph$/;" i
re py/ocutils.py /^import sys, re, occam, time, heapq, ocGraph$/;" i
occam py/ocutils.py /^import sys, re, occam, time, heapq, ocGraph$/;" i
time py/ocutils.py /^import sys, re, occam, time, heapq, ocGraph$/;" i
heapq py/ocutils.py /^import sys, re, occam, time, heapq, ocGraph$/;" i
ocGraph py/ocutils.py /^import sys, re, occam, time, heapq, ocGraph$/;" i
totalgen py/ocutils.py /^totalgen=0$/;" v
totalkept py/ocutils.py /^totalkept=0$/;" v
maxMemoryToUse py/ocutils.py /^maxMemoryToUse = 8 * 2**30$/;" v
ocUtils py/ocutils.py /^class ocUtils:$/;" c
TABSEP py/ocutils.py /^ TABSEP=1$/;" v class:ocUtils
COMMASEP py/ocutils.py /^ COMMASEP=2$/;" v class:ocUtils
SPACESEP py/ocutils.py /^ SPACESEP=3$/;" v class:ocUtils
HTMLFORMAT py/ocutils.py /^ HTMLFORMAT=4$/;" v class:ocUtils
__init__ py/ocutils.py /^ def __init__(self,man):$/;" m class:ocUtils
initFromCommandLine py/ocutils.py /^ def initFromCommandLine(self, argv):$/;" m class:ocUtils
setReportVariables py/ocutils.py /^ def setReportVariables(self, reportAttributes):$/;" m class:ocUtils
setReportSeparator py/ocutils.py /^ def setReportSeparator(self, format):$/;" m class:ocUtils
setFitClassifierTarget py/ocutils.py /^ def setFitClassifierTarget(self, target):$/;" m class:ocUtils
setSkipTrainedModelTable py/ocutils.py /^ def setSkipTrainedModelTable(self, b):$/;" m class:ocUtils
setSkipIVITables py/ocutils.py /^ def setSkipIVITables(self, b):$/;" m class:ocUtils
setSkipNominal py/ocutils.py /^ def setSkipNominal(self, useFlag):$/;" m class:ocUtils
setUseInverseNotation py/ocutils.py /^ def setUseInverseNotation(self, useFlag):$/;" m class:ocUtils
setValuesAreFunctions py/ocutils.py /^ def setValuesAreFunctions(self, useFlag):$/;" m class:ocUtils
setDDFMethod py/ocutils.py /^ def setDDFMethod(self, DDFMethod):$/;" m class:ocUtils
setSortDir py/ocutils.py /^ def setSortDir(self, sortDir):$/;" m class:ocUtils
setSearchSortDir py/ocutils.py /^ def setSearchSortDir(self, sortDir):$/;" m class:ocUtils
setSearchWidth py/ocutils.py /^ def setSearchWidth(self, searchWidth):$/;" m class:ocUtils
setSearchLevels py/ocutils.py /^ def setSearchLevels(self, searchLevels):$/;" m class:ocUtils
setReportSortName py/ocutils.py /^ def setReportSortName(self, sortName):$/;" m class:ocUtils
setSearchFilter py/ocutils.py /^ def setSearchFilter(self, searchFilter):$/;" m class:ocUtils
setAlphaThreshold py/ocutils.py /^ def setAlphaThreshold(self, alphaThreshold):$/;" m class:ocUtils
setRefModel py/ocutils.py /^ def setRefModel(self, refModel):$/;" m class:ocUtils
setStartModel py/ocutils.py /^ def setStartModel(self, startModel):$/;" m class:ocUtils
getStartModel py/ocutils.py /^ def getStartModel(self):$/;" m class:ocUtils
setFitModel py/ocutils.py /^ def setFitModel(self, fitModel):$/;" m class:ocUtils
setReportFile py/ocutils.py /^ def setReportFile(self, reportFile):$/;" m class:ocUtils
setAction py/ocutils.py /^ def setAction(self, action):$/;" m class:ocUtils
setDataFile py/ocutils.py /^ def setDataFile(self, dataFile):$/;" m class:ocUtils
setCalcExpectedDV py/ocutils.py /^ def setCalcExpectedDV(self, calcExpectedDV):$/;" m class:ocUtils
setDefaultFitModel py/ocutils.py /^ def setDefaultFitModel(self, model):$/;" m class:ocUtils
setNoIPF py/ocutils.py /^ def setNoIPF(self, state):$/;" m class:ocUtils
isDirected py/ocutils.py /^ def isDirected(self):$/;" m class:ocUtils
hasTestData py/ocutils.py /^ def hasTestData(self):$/;" m class:ocUtils
__compareModels py/ocutils.py /^ def __compareModels(self, m1, m2):$/;" m class:ocUtils file:
computeSortStatistic py/ocutils.py /^ def computeSortStatistic(self, model):$/;" m class:ocUtils
processModel py/ocutils.py /^ def processModel(self, level, newModelsHeap, model):$/;" m class:ocUtils
processLevel py/ocutils.py /^ def processLevel(self, level, oldModels, clear_cache_flag):$/;" m class:ocUtils
searchType py/ocutils.py /^ def searchType(self):$/;" m class:ocUtils
sbSearchType py/ocutils.py /^ def sbSearchType(self):$/;" m class:ocUtils
doSearch py/ocutils.py /^ def doSearch(self, printOptions):$/;" m class:ocUtils
doSbSearch py/ocutils.py /^ def doSbSearch(self,printOptions):$/;" m class:ocUtils
printSearchReport py/ocutils.py /^ def printSearchReport(self):$/;" m class:ocUtils
printSearchGraphs py/ocutils.py /^ def printSearchGraphs(self):$/;" m class:ocUtils
newl py/ocutils.py /^ def newl(self):$/;" m class:ocUtils
splitCaps py/ocutils.py /^ def splitCaps(self,s): $/;" m class:ocUtils
splitModel py/ocutils.py /^ def splitModel(self,modelName):$/;" m class:ocUtils
checkModelName py/ocutils.py /^ def checkModelName(self, modelName):$/;" m class:ocUtils
printGraph py/ocutils.py /^ def printGraph(self,modelName, only):$/;" m class:ocUtils
doFit py/ocutils.py /^ def doFit(self,printOptions, onlyGfx):$/;" m class:ocUtils
maybePrintGraphSVG py/ocutils.py /^ def maybePrintGraphSVG(self, model, header):$/;" m class:ocUtils
maybePrintGraphGephi py/ocutils.py /^ def maybePrintGraphGephi(self, model, header):$/;" m class:ocUtils
generateGraph py/ocutils.py /^ def generateGraph(self, model):$/;" m class:ocUtils
setGfx py/ocutils.py /^ def setGfx(self, useGfx, layout=None, gephi=False, hideIV=True, hideDV=True, fullVarNames=False, width=640, height=480, fontSize=12, nodeSize=24):$/;" m class:ocUtils
doAllComputations py/ocutils.py /^ def doAllComputations(self, model):$/;" m class:ocUtils
doSbFit py/ocutils.py /^ def doSbFit(self,printOptions):$/;" m class:ocUtils
occam2Settings py/ocutils.py /^ def occam2Settings(self):$/;" m class:ocUtils
doAction py/ocutils.py /^ def doAction(self, printOptions, onlyGfx=False):$/;" m class:ocUtils
printOption py/ocutils.py /^ def printOption(self,label, value):$/;" m class:ocUtils
printOptions py/ocutils.py /^ def printOptions(self,r_type):$/;" m class:ocUtils
findBestModel py/ocutils.py /^ def findBestModel(self):$/;" m class:ocUtils
computeUnaryStatistic py/ocutils.py /^ def computeUnaryStatistic(self, model, key, modname):$/;" m class:ocUtils
computeBinaryStatistic py/ocutils.py /^ def computeBinaryStatistic(self, compare_order, key):$/;" m class:ocUtils
math py/distanceFunctions.py /^import math$/;" i
zipwise_fold py/distanceFunctions.py /^def zipwise_fold(base, fold, proj, ls):$/;" f
zipwise_sum py/distanceFunctions.py /^def zipwise_sum(proj, ls):$/;" f
zipwise_max py/distanceFunctions.py /^def zipwise_max(proj, ls):$/;" f
absoluteDist py/distanceFunctions.py /^def absoluteDist(compare_order):$/;" f
euclideanDist py/distanceFunctions.py /^def euclideanDist(compare_order):$/;" f
bhattacharyaCoeff py/distanceFunctions.py /^def bhattacharyaCoeff(compare_order):$/;" f
hellingerDist py/distanceFunctions.py /^def hellingerDist(compare_order):$/;" f
PROB_MIN py/distanceFunctions.py /^PROB_MIN = 1e-36$/;" v
klComponentSum py/distanceFunctions.py /^def klComponentSum(x, y):$/;" f
klDist py/distanceFunctions.py /^def klDist(compare_order):$/;" f
maxDist py/distanceFunctions.py /^def maxDist(compare_order):$/;" f
distanceMetrics py/distanceFunctions.py /^distanceMetrics = {$/;" v
computeDistanceMetric py/distanceFunctions.py /^def computeDistanceMetric(k, compare_order):$/;" f
os py/jobcontrol.py /^import os, sys, re$/;" i
sys py/jobcontrol.py /^import os, sys, re$/;" i
re py/jobcontrol.py /^import os, sys, re$/;" i
JobControl py/jobcontrol.py /^class JobControl:$/;" c
showJobs py/jobcontrol.py /^ def showJobs(self, formFields):$/;" m class:JobControl
re py/OpagCGI.py /^import re, types, os$/;" i
types py/OpagCGI.py /^import re, types, os$/;" i
os py/OpagCGI.py /^import re, types, os$/;" i
TRUE py/OpagCGI.py /^TRUE = 1$/;" v
FALSE py/OpagCGI.py /^FALSE = 0$/;" v
replacement_dict py/OpagCGI.py /^replacement_dict = {}$/;" v
Replacer py/OpagCGI.py /^class Replacer:$/;" c
__init__ py/OpagCGI.py /^ def __init__(self, dict):$/;" m class:Replacer
replace py/OpagCGI.py /^ def replace(self, matchobj):$/;" m class:Replacer
OpagCGI py/OpagCGI.py /^class OpagCGI:$/;" c
__init__ py/OpagCGI.py /^ def __init__(self, template=''):$/;" m class:OpagCGI
set_template py/OpagCGI.py /^ def set_template(self, template):$/;" m class:OpagCGI
parse py/OpagCGI.py /^ def parse(self, dict, header=FALSE):$/;" m class:OpagCGI
out py/OpagCGI.py /^ def out(self, dict, header=FALSE):$/;" m class:OpagCGI
OpagRuntimeError py/OpagCGI.py /^class OpagRuntimeError(RuntimeError):$/;" c
OpagMissingPrecondition py/OpagCGI.py /^class OpagMissingPrecondition(OpagRuntimeError):$/;" c
os py/bp.py /^import os, sys, occam$/;" i
sys py/bp.py /^import os, sys, occam$/;" i
occam py/bp.py /^import os, sys, occam$/;" i
ocUtils py/bp.py /^from ocutils import ocUtils$/;" i
util py/bp.py /^util = ocUtils()$/;" v
re py/ocGraph.py /^import re$/;" i
itertools py/ocGraph.py /^import itertools$/;" i
igraph py/ocGraph.py /^import igraph$/;" i
StripDrawer py/ocGraph.py /^class StripDrawer(igraph.drawing.shapes.ShapeDrawer):$/;" c
names py/ocGraph.py /^ names = "strip"$/;" v class:StripDrawer
draw_path py/ocGraph.py /^ def draw_path(ctx, center_x, center_y, width, height=20):$/;" m class:StripDrawer
intersection_point py/ocGraph.py /^ def intersection_point(center_x, center_y, source_x, source_y, width, height=20):$/;" m class:StripDrawer
textwidth py/ocGraph.py /^def textwidth(text, fontsize=14):$/;" f
cairo py/ocGraph.py /^ import cairo$/;" i
generate py/ocGraph.py /^def generate(modelName, varlist, hideIV, hideDV, dvName, fullVarNames, allHigherOrder):$/;" f
printPlot py/ocGraph.py /^def printPlot(graph, layout, extension, filename, width, height, fontSize, nodeSizeOrig):$/;" f
printSVG py/ocGraph.py /^def printSVG(graph, layout, width, height, fontSize, nodeSize):$/;" f
printPDF py/ocGraph.py /^def printPDF(filename, graph, layout, width, height, fontSize, nodeSize):$/;" f
printGephi py/ocGraph.py /^def printGephi(graph):$/;" f
gephiNodes py/ocGraph.py /^def gephiNodes(graph):$/;" f
gephiEdges py/ocGraph.py /^def gephiEdges(graph):$/;" f
os py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
cgi py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
sys py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
occam py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
time py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
string py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
pickle py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
zipfile py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
datetime py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
tempfile py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
cgitb py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
urllib2 py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
platform py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
traceback py/common.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback$/;" i
getUniqueFilename py/common.py /^def getUniqueFilename(file_name):$/;" f
pdb py/basic.py /^import pdb$/;" i
os py/basic.py /^import os, sys$/;" i
sys py/basic.py /^import os, sys$/;" i
occam py/basic.py /^import occam$/;" i
time py/basic.py /^import time$/;" i
resource py/basic.py /^import resource$/;" i
ocUtils py/basic.py /^from ocutils import ocUtils$/;" i
swidth py/basic.py /^ swidth = sys.argv[2]$/;" v
slevels py/basic.py /^ slevels = sys.argv[3]$/;" v
swidth py/basic.py /^ swidth = 3;$/;" v
slevels py/basic.py /^ slevels = 7;$/;" v
filter py/basic.py /^ filter = sys.argv[4]$/;" v
filter py/basic.py /^ filter = "loopless"$/;" v
util py/basic.py /^util = ocUtils("VB") # create a variable-based manager$/;" v
t1 py/basic.py /^t1 = time.time()$/;" v
t2 py/basic.py /^t2 = time.time()$/;" v
t3 py/basic.py /^t3 = time.time()$/;" v
sys py/occammail.py /^import sys, os, smtplib, socket$/;" i
os py/occammail.py /^import sys, os, smtplib, socket$/;" i
smtplib py/occammail.py /^import sys, os, smtplib, socket$/;" i
socket py/occammail.py /^import sys, os, smtplib, socket$/;" i
MIMEText py/occammail.py /^ from email.MIMEText import MIMEText$/;" i
MIMEMultipart py/occammail.py /^ from email.MIMEMultipart import MIMEMultipart$/;" i
MIMEText py/occammail.py /^ from email.mime.text import MIMEText$/;" i
MIMEMultipart py/occammail.py /^ from email.mime.multipart import MIMEMultipart$/;" i
sendMessage py/occammail.py /^def sendMessage(toaddr, msg):$/;" f
buildMessage py/occammail.py /^def buildMessage(infile, filename, emailSubject):$/;" f
toaddr py/occammail.py /^toaddr = sys.argv[1]$/;" v
filename py/occammail.py /^filename = sys.argv[2]$/;" v
emailSubject py/occammail.py /^emailSubject = sys.argv[3].decode("hex")$/;" v
msg py/occammail.py /^msg = buildMessage(sys.stdin, filename, emailSubject)$/;" v
os py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
cgi py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
sys py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
occam py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
time py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
string py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
pickle py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
zipfile py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
datetime py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
tempfile py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
cgitb py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
urllib2 py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
platform py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
traceback py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
distanceFunctions py/weboccam.py /^import os, cgi, sys, occam, time, string, pickle, zipfile, datetime, tempfile, cgitb, urllib2, platform, traceback, distanceFunctions$/;" i
clock py/weboccam.py /^from time import clock$/;" i
ocUtils py/weboccam.py /^from ocutils import ocUtils$/;" i
OpagCGI py/weboccam.py /^from OpagCGI import OpagCGI$/;" i
JobControl py/weboccam.py /^from jobcontrol import JobControl$/;" i
ocGraph py/weboccam.py /^import ocGraph$/;" i
VERSION py/weboccam.py /^VERSION = "3.4.0"$/;" v
stdout_save py/weboccam.py /^stdout_save = None$/;" v
datadir py/weboccam.py /^datadir = "data"$/;" v
globalOcInstance py/weboccam.py /^globalOcInstance = None$/;" v
apply_if py/weboccam.py /^def apply_if(predicate, func, val):$/;" f
getDataFileName py/weboccam.py /^def getDataFileName(formFields, trim=false, key='datafilename'):$/;" f
useGfx py/weboccam.py /^def useGfx(formFields):$/;" f
csvname py/weboccam.py /^csvname = ""$/;" v
printHeaders py/weboccam.py /^def printHeaders(formFields, textFormat):$/;" f
printTop py/weboccam.py /^def printTop(template, textFormat):$/;" f
printTime py/weboccam.py /^def printTime(textFormat):$/;" f
attemptParseInt py/weboccam.py /^def attemptParseInt(string, default, msg, verbose):$/;" f
graphWidth py/weboccam.py /^def graphWidth():$/;" f
graphHeight py/weboccam.py /^def graphHeight():$/;" f
graphFontSize py/weboccam.py /^def graphFontSize():$/;" f
graphNodeSize py/weboccam.py /^def graphNodeSize():$/;" f
outputToZip py/weboccam.py /^def outputToZip(oc):$/;" f
printBottom py/weboccam.py /^def printBottom():$/;" f
printForm py/weboccam.py /^def printForm(formFields):$/;" f
actionForm py/weboccam.py /^def actionForm(form, errorText):$/;" f
getDataFileAlloc py/weboccam.py /^def getDataFileAlloc(formFields, key='datafilename'):$/;" f
getDataFileAllocByName py/weboccam.py /^def getDataFileAllocByName(fn, data):$/;" f
getDataFile py/weboccam.py /^def getDataFile(formFields):$/;" f
prepareCachedData py/weboccam.py /^def prepareCachedData(formFields):$/;" f
unpackToString py/weboccam.py /^ def unpackToString(fn, data):$/;" f function:prepareCachedData
unzipDataFile py/weboccam.py /^def unzipDataFile(datafile):$/;" f
processFit py/weboccam.py /^def processFit(fn, model, negativeDVforConfusion, oc, onlyGfx):$/;" f
processSBFit py/weboccam.py /^def processSBFit(fn, model, negativeDVforConfusion, oc, onlyGfx):$/;" f
maybeSkipResiduals py/weboccam.py /^def maybeSkipResiduals(formFields, oc):$/;" f
maybeSkipIVIs py/weboccam.py /^def maybeSkipIVIs(formFields, oc):$/;" f
handleGraphOptions py/weboccam.py /^def handleGraphOptions(oc, formFields):$/;" f
actionFit py/weboccam.py /^def actionFit(formFields):$/;" f
actionFitBatch py/weboccam.py /^def actionFitBatch(formFields):$/;" f
actionSBFit py/weboccam.py /^def actionSBFit(formFields):$/;" f
actionSearch py/weboccam.py /^def actionSearch(formFields):$/;" f
actionBatchCompare py/weboccam.py /^def actionBatchCompare(formFields):$/;" f
makePairs py/weboccam.py /^ def makePairs(zip_data):$/;" f function:actionBatchCompare
extract py/weboccam.py /^ def extract(x):$/;" f function:actionBatchCompare
getStatHeaders py/weboccam.py /^ def getStatHeaders():$/;" f function:actionBatchCompare
bracket py/weboccam.py /^ def bracket(s, hl, hr, tl, tr):$/;" f function:actionBatchCompare
computeBestModel py/weboccam.py /^ def computeBestModel(filename): $/;" f function:actionBatchCompare
selectBest py/weboccam.py /^ def selectBest(stats):$/;" f function:actionBatchCompare
computeBinaryStatistics py/weboccam.py /^ def computeBinaryStatistics(report_items, comp_order):$/;" f function:actionBatchCompare
computeModelStats py/weboccam.py /^ def computeModelStats(model_A, model_B):$/;" f function:actionBatchCompare
runAnalysis py/weboccam.py /^ def runAnalysis(pair_name, file_A, file_B): $/;" f function:actionBatchCompare
ppOptions py/weboccam.py /^ def ppOptions():$/;" f function:actionBatchCompare
ppColumnList py/weboccam.py /^ def ppColumnList():$/;" f function:actionBatchCompare
ppAnalysis py/weboccam.py /^ def ppAnalysis(row):$/;" f function:actionBatchCompare
ppStats py/weboccam.py /^ def ppStats(stats_1, stats_2):$/;" f function:actionBatchCompare
ppHeader py/weboccam.py /^ def ppHeader():$/;" f function:actionBatchCompare
actionSBSearch py/weboccam.py /^def actionSBSearch(formFields):$/;" f
actionShowLog py/weboccam.py /^def actionShowLog(formFields):$/;" f
actionError py/weboccam.py /^def actionError():$/;" f
getFormFields py/weboccam.py /^def getFormFields(form):$/;" f
getTimestampedFilename py/weboccam.py /^def getTimestampedFilename(file_name):$/;" f
startBatch py/weboccam.py /^def startBatch(formFields):$/;" f
getWebControls py/weboccam.py /^def getWebControls():$/;" f
getBatchControls py/weboccam.py /^def getBatchControls():$/;" f
printBatchLog py/weboccam.py /^def printBatchLog(email):$/;" f
startNormal py/weboccam.py /^def startNormal(formFields):$/;" f
finalizeGfx py/weboccam.py /^def finalizeGfx():$/;" f
template py/weboccam.py /^template = OpagCGI()$/;" v
datafile py/weboccam.py /^datafile = ""$/;" v
textFormat py/weboccam.py /^textFormat = ""$/;" v
printOptions py/weboccam.py /^printOptions = ""$/;" v
startt py/weboccam.py /^startt = time.time()$/;" v
argc py/weboccam.py /^argc = len(sys.argv)$/;" v
formFields py/weboccam.py /^ formFields = getWebControls()$/;" v
textFormat py/weboccam.py /^textFormat = formFields.get("format", "") != ""$/;" v
textFormat py/weboccam.py /^ textFormat = 0$/;" v
printOptions py/weboccam.py /^ printOptions = "true"$/;" v
textFormat py/weboccam.py /^ textFormat = 0$/;" v
r1 py/weboccam.py /^ r1 = formFields.pop('gfx', None)$/;" v
r2 py/weboccam.py /^ r2 = formFields.pop('gephi', None)$/;" v
t py/weboccam.py /^ t = (r1 != None) or (r2 != None)$/;" v
SHELL Makefile /^SHELL = \/bin\/sh$/;" m
INSTALL_ROOT Makefile /^INSTALL_ROOT = install$/;" m
WEB_ROOT Makefile /^WEB_ROOT = $(INSTALL_ROOT)\/web$/;" m
CL_ROOT Makefile /^CL_ROOT = $(INSTALL_ROOT)\/cl$/;" m
PY_INCLUDE Makefile /^PY_INCLUDE = \/usr\/include\/python2.7$/;" m
HEADERS Makefile /^HEADERS = \\$/;" m
CPP_FILES Makefile /^CPP_FILES = \\$/;" m
CORE_FILES Makefile /^CORE_FILES = \\$/;" m
CL_FILES Makefile /^CL_FILES = \\$/;" m
WEB_FILES Makefile /^WEB_FILES = \\$/;" m
___Input include/Input.h /^#define ___Input$/;" d
___AttributeList include/AttributeList.h /^#define ___AttributeList$/;" d
AttributeList include/AttributeList.h /^class AttributeList {$/;" c
names include/AttributeList.h /^ const char** names;$/;" m class:AttributeList
values include/AttributeList.h /^ double *values;$/;" m class:AttributeList
attrCount include/AttributeList.h /^ int attrCount;$/;" m class:AttributeList
maxAttrCount include/AttributeList.h /^ int maxAttrCount;$/;" m class:AttributeList
___Relation include/Relation.h /^#define ___Relation$/;" d
Relation include/Relation.h /^class Relation {$/;" c
getKeySize include/Relation.h /^ int getKeySize() {$/;" f class:Relation
getHashNext include/Relation.h /^ Relation *getHashNext() {$/;" f class:Relation
setHashNext include/Relation.h /^ void setHashNext(Relation *next) {$/;" f class:Relation
getAttributeList include/Relation.h /^ class AttributeList *getAttributeList() {$/;" f class:Relation
varList include/Relation.h /^ VariableList *varList; \/\/ variable list associated with this relation$/;" m class:Relation
vars include/Relation.h /^ int *vars; \/\/ array of variable indices$/;" m class:Relation
states include/Relation.h /^ int *states; \/\/ARRAY OF STATES associated with each$/;" m class:Relation
varCount include/Relation.h /^ int varCount; \/\/ number of vars in relation$/;" m class:Relation
maxVarCount include/Relation.h /^ int maxVarCount; \/\/ size of vars array$/;" m class:Relation
table include/Relation.h /^ class Table *table;$/;" m class:Relation typeref:class:Relation::Table
stateConstraints include/Relation.h /^ class StateConstraint *stateConstraints; \/\/ state constraints$/;" m class:Relation typeref:class:Relation::StateConstraint
hashNext include/Relation.h /^ Relation *hashNext; \/\/ linkage for storing relations in a hash table$/;" m class:Relation
mask include/Relation.h /^ KeySegment *mask; \/\/ mask has zero for variables in this rel, 1's elsewhere$/;" m class:Relation
attributeList include/Relation.h /^ class AttributeList *attributeList;$/;" m class:Relation typeref:class:Relation::AttributeList
printName include/Relation.h /^ char *printName;$/;" m class:Relation
inverseName include/Relation.h /^ char *inverseName;$/;" m class:Relation
indepOnly include/Relation.h /^ int indepOnly; \/\/ remembers if relation is independent only$/;" m class:Relation
___VariableList include/VariableList.h /^#define ___VariableList$/;" d
VariableList include/VariableList.h /^class VariableList {$/;" c
getVarCount include/VariableList.h /^ int getVarCount() {$/;" f class:VariableList
getVarCountDF include/VariableList.h /^ int getVarCountDF() {$/;" f class:VariableList
getMaxAbbrevLen include/VariableList.h /^ int getMaxAbbrevLen() {$/;" f class:VariableList
vars include/VariableList.h /^ Variable *vars;$/;" m class:VariableList
varCount include/VariableList.h /^ int varCount; \/\/ number of variables defined so far$/;" m class:VariableList
varCountDF include/VariableList.h /^ int varCountDF; \/\/(Anjali) original no. of variables in data file, some may be marked for no use$/;" m class:VariableList
maxVarCount include/VariableList.h /^ int maxVarCount; \/\/ max number of variables$/;" m class:VariableList
maxAbbrevLen include/VariableList.h /^ int maxAbbrevLen;$/;" m class:VariableList
noUseMaskSize include/VariableList.h /^ int noUseMaskSize;$/;" m class:VariableList
noUseMask include/VariableList.h /^ bool *noUseMask;$/;" m class:VariableList
___StateConstraint include/StateConstraint.h /^#define ___StateConstraint$/;" d
StateConstraint include/StateConstraint.h /^class StateConstraint {$/;" c
constraints include/StateConstraint.h /^ KeySegment *constraints;$/;" m class:StateConstraint
constraintCount include/StateConstraint.h /^ long constraintCount;$/;" m class:StateConstraint
maxConstraintCount include/StateConstraint.h /^ long maxConstraintCount;$/;" m class:StateConstraint
keysize include/StateConstraint.h /^ int keysize;$/;" m class:StateConstraint
___Types include/Types.h /^#define ___Types$/;" d
KeySegment include/Types.h /^typedef unsigned long KeySegment;$/;" t
ocTupleValue include/Types.h /^typedef double ocTupleValue;$/;" t
Direction include/Types.h /^enum class Direction { Ascending, Descending };$/;" c
Ascending include/Types.h /^enum class Direction { Ascending, Descending };$/;" m class:Direction
TableType include/Types.h /^enum class TableType { InformationTheoretic, SetTheoretic };$/;" c
InformationTheoretic include/Types.h /^enum class TableType { InformationTheoretic, SetTheoretic };$/;" m class:TableType
___Key include/Key.h /^#define ___Key$/;" d
Key include/Key.h /^namespace Key {$/;" n
___StateBasedManager include/SBMManager.h /^#define ___StateBasedManager$/;" d
SBMManager include/SBMManager.h /^class SBMManager: public ManagerBase {$/;" c
getTopRefModel include/SBMManager.h /^ Model *getTopRefModel() {$/;" f class:SBMManager
getBottomRefModel include/SBMManager.h /^ Model *getBottomRefModel() {$/;" f class:SBMManager
getRefModel include/SBMManager.h /^ Model *getRefModel() {$/;" f class:SBMManager
getSearchDirection include/SBMManager.h /^ int getSearchDirection() {$/;" f class:SBMManager
setMakeProjection include/SBMManager.h /^ void setMakeProjection(bool proj) {$/;" f class:SBMManager
makeProjection include/SBMManager.h /^ bool makeProjection() {$/;" f class:SBMManager
getSearch include/SBMManager.h /^ class SearchBase *getSearch() {$/;" f class:SBMManager
RelOp include/SBMManager.h /^ enum RelOp {$/;" g class:SBMManager
LESSTHAN include/SBMManager.h /^ LESSTHAN, EQUALS, GREATERTHAN$/;" e enum:SBMManager::RelOp
EQUALS include/SBMManager.h /^ LESSTHAN, EQUALS, GREATERTHAN$/;" e enum:SBMManager::RelOp
GREATERTHAN include/SBMManager.h /^ LESSTHAN, EQUALS, GREATERTHAN$/;" e enum:SBMManager::RelOp
getSortAttr include/SBMManager.h /^ const char *getSortAttr() {$/;" f class:SBMManager
setDirectionection include/SBMManager.h /^ void setDirectionection(int dir) {$/;" f class:SBMManager
getDirectionection include/SBMManager.h /^ int getDirectionection() {$/;" f class:SBMManager
projection include/SBMManager.h /^ bool projection;$/;" m class:SBMManager
search include/SBMManager.h /^ class SearchBase *search;$/;" m class:SBMManager typeref:class:SBMManager::SearchBase
filterAttr include/SBMManager.h /^ char *filterAttr;$/;" m class:SBMManager
filterValue include/SBMManager.h /^ double filterValue;$/;" m class:SBMManager
sortAttr include/SBMManager.h /^ char *sortAttr;$/;" m class:SBMManager
sortDirection include/SBMManager.h /^ int sortDirection;$/;" m class:SBMManager
filterOp include/SBMManager.h /^ RelOp filterOp;$/;" m class:SBMManager
___VariableBasedManager include/VBMManager.h /^#define ___VariableBasedManager$/;" d
VBMManager include/VBMManager.h /^class VBMManager: public ManagerBase {$/;" c
getTopRefModel include/VBMManager.h /^ Model *getTopRefModel() {$/;" f class:VBMManager
getBottomRefModel include/VBMManager.h /^ Model *getBottomRefModel() {$/;" f class:VBMManager
getRefModel include/VBMManager.h /^ Model *getRefModel() {$/;" f class:VBMManager
getUseInverseNotation include/VBMManager.h /^ int getUseInverseNotation() {$/;" f class:VBMManager
setMakeProjection include/VBMManager.h /^ void setMakeProjection(bool proj) {$/;" f class:VBMManager
makeProjection include/VBMManager.h /^ bool makeProjection() {$/;" f class:VBMManager
getSearch include/VBMManager.h /^ class SearchBase *getSearch() {$/;" f class:VBMManager
RelOp include/VBMManager.h /^ enum RelOp {$/;" g class:VBMManager
LESSTHAN include/VBMManager.h /^ LESSTHAN, EQUALS, GREATERTHAN$/;" e enum:VBMManager::RelOp
EQUALS include/VBMManager.h /^ LESSTHAN, EQUALS, GREATERTHAN$/;" e enum:VBMManager::RelOp
GREATERTHAN include/VBMManager.h /^ LESSTHAN, EQUALS, GREATERTHAN$/;" e enum:VBMManager::RelOp
getSortAttr include/VBMManager.h /^ const char *getSortAttr() {$/;" f class:VBMManager
setDirectionection include/VBMManager.h /^ void setDirectionection(int dir) {$/;" f class:VBMManager
getDirectionection include/VBMManager.h /^ int getDirectionection() {$/;" f class:VBMManager
projection include/VBMManager.h /^ bool projection;$/;" m class:VBMManager
search include/VBMManager.h /^ class SearchBase *search;$/;" m class:VBMManager typeref:class:VBMManager::SearchBase
filterAttr include/VBMManager.h /^ char *filterAttr;$/;" m class:VBMManager
filterValue include/VBMManager.h /^ double filterValue;$/;" m class:VBMManager
sortAttr include/VBMManager.h /^ char *sortAttr;$/;" m class:VBMManager
sortDirection include/VBMManager.h /^ int sortDirection;$/;" m class:VBMManager
filterOp include/VBMManager.h /^ RelOp filterOp;$/;" m class:VBMManager
useInverseNotation include/VBMManager.h /^ int useInverseNotation;$/;" m class:VBMManager
firstCome include/VBMManager.h /^ bool firstCome;$/;" m class:VBMManager
firstComeBP include/VBMManager.h /^ bool firstComeBP;$/;" m class:VBMManager
refer_AIC include/VBMManager.h /^ double refer_AIC;$/;" m class:VBMManager
refer_BIC include/VBMManager.h /^ double refer_BIC;$/;" m class:VBMManager
refer_BP_AIC include/VBMManager.h /^ double refer_BP_AIC;$/;" m class:VBMManager
refer_BP_BIC include/VBMManager.h /^ double refer_BP_BIC;$/;" m class:VBMManager
DDFMethod include/VBMManager.h /^ int DDFMethod; \/\/ method to use for computing DDF. 0=new (default); 1=old$/;" m class:VBMManager
___SearchBase include/SearchBase.h /^#define ___SearchBase$/;" d
SearchBase include/SearchBase.h /^class SearchBase {$/;" c
isDirected include/SearchBase.h /^ bool isDirected() { return directed; }$/;" f class:SearchBase
makeProjection include/SearchBase.h /^ bool makeProjection() { return projection; }$/;" f class:SearchBase
getManager include/SearchBase.h /^ ManagerBase *getManager() { return manager; }$/;" f class:SearchBase
setManager include/SearchBase.h /^ void setManager(ManagerBase *mgr) { manager = mgr; }$/;" f class:SearchBase
setDirected include/SearchBase.h /^ void setDirected(bool dir) { directed = dir; }$/;" f class:SearchBase
setMakeProjection include/SearchBase.h /^ void setMakeProjection(bool proj) { projection = proj; }$/;" f class:SearchBase
manager include/SearchBase.h /^ ManagerBase *manager;$/;" m class:SearchBase
directed include/SearchBase.h /^ bool directed; \/\/ system is directed (has dependent variables)$/;" m class:SearchBase
projection include/SearchBase.h /^ bool projection; \/\/ create a projection table for all new relations$/;" m class:SearchBase
SearchFactory include/SearchBase.h /^class SearchFactory {$/;" c
___attrDesc include/attrDescs.h /^#define ___attrDesc$/;" d
attrDesc include/attrDescs.h /^class attrDesc {$/;" c
name include/attrDescs.h /^ const char *name;$/;" m class:attrDesc
title include/attrDescs.h /^ const char *title;$/;" m class:attrDesc
fmt include/attrDescs.h /^ const char *fmt;$/;" m class:attrDesc
attrDescriptions include/attrDescs.h /^constexpr attrDesc attrDescriptions[] = { $/;" v
___Variable include/Variable.h /^#define ___Variable$/;" d
Variable include/Variable.h /^class Variable { \/\/ internal use only - see VariableList$/;" c
cardinality include/Variable.h /^ int cardinality; \/\/ number of values of the variable$/;" m class:Variable
segment include/Variable.h /^ int segment; \/\/ which KeySegment of the key this variable is in$/;" m class:Variable
shift include/Variable.h /^ int shift; \/\/ starting rightmost bit position of value in segment$/;" m class:Variable
size include/Variable.h /^ int size; \/\/ number of bits (log2 of (cardinality+1))$/;" m class:Variable
dv include/Variable.h /^ bool dv; \/\/ is it a dependent variable?$/;" m class:Variable
mask include/Variable.h /^ KeySegment mask; \/\/ a bitmask of 1's in the bit positions for this variable$/;" m class:Variable
name include/Variable.h /^ char name[MAXNAMELEN + 1]; \/\/ long name of variable (max 32 chars)$/;" m class:Variable
abbrev include/Variable.h /^ char abbrev[MAXABBREVLEN + 1]; \/\/ abbreviated name for variable$/;" m class:Variable
valmap include/Variable.h /^ char* valmap[MAXCARDINALITY]; \/\/ maps input file values to nominal values$/;" m class:Variable
rebin include/Variable.h /^ bool rebin; \/\/is rebinning required for this variable$/;" m class:Variable
oldnew include/Variable.h /^ char * oldnew[2][MAXCARDINALITY];$/;" m class:Variable
old_card include/Variable.h /^ int old_card;$/;" m class:Variable
exclude include/Variable.h /^ char *exclude;$/;" m class:Variable
___Globals include/Globals.h /^#define ___Globals$/;" d
___Options include/Options.h /^#define ___Options$/;" d
MAXLINE include/Options.h /^#define MAXLINE /;" d
Options include/Options.h /^class Options {$/;" c
defaultOptDef include/Options.h /^ class ocOptionDef *defaultOptDef;$/;" m class:Options typeref:class:Options::ocOptionDef
defs include/Options.h /^ class ocOptionDef *defs;$/;" m class:Options typeref:class:Options::ocOptionDef
options include/Options.h /^ class ocOption *options;$/;" m class:Options typeref:class:Options::ocOption
___ModelCache include/ModelCache.h /^#define ___ModelCache$/;" d
MODELCACHE_HASHSIZE include/ModelCache.h /^#define MODELCACHE_HASHSIZE /;" d
ModelCache include/ModelCache.h /^class ModelCache {$/;" c
hash include/ModelCache.h /^ class Model **hash;$/;" m class:ModelCache typeref:class:ModelCache::Model
___Constants include/Constants.h /^#define ___Constants$/;" d
DONT_CARE include/Constants.h /^const int DONT_CARE = 0xffffffff; \/\/ all bits on$/;" v
KEY_SEGMENT_BITS include/Constants.h /^const int KEY_SEGMENT_BITS = 32; \/\/ number of usable bits in a key segment$/;" v
MAXNAMELEN include/Constants.h /^const int MAXNAMELEN = 32;$/;" v
MAXABBREVLEN include/Constants.h /^const int MAXABBREVLEN = 8;$/;" v
MAXCARDINALITY include/Constants.h /^const int MAXCARDINALITY = 65535;$/;" v
ALL include/Constants.h /^const int ALL = 1;$/;" v
REST_ALL include/Constants.h /^const int REST_ALL = -1;$/;" v
KEEP include/Constants.h /^const int KEEP = 1;$/;" v
DISCARD include/Constants.h /^const int DISCARD = -1;$/;" v
PRINT_MIN include/Constants.h /^const double PRINT_MIN = 1e-8;$/;" v
PROB_MIN include/Constants.h /^const double PROB_MIN = 1e-36;$/;" v
OLD_ROW include/Constants.h /^#define OLD_ROW /;" d
NEW_ROW include/Constants.h /^#define NEW_ROW /;" d
ATTRIBUTE_LEVEL include/Constants.h /^#define ATTRIBUTE_LEVEL /;" d
ATTRIBUTE_H include/Constants.h /^#define ATTRIBUTE_H /;" d
ATTRIBUTE_T include/Constants.h /^#define ATTRIBUTE_T /;" d
ATTRIBUTE_DF include/Constants.h /^#define ATTRIBUTE_DF /;" d
ATTRIBUTE_DDF include/Constants.h /^#define ATTRIBUTE_DDF /;" d
ATTRIBUTE_DDF_IND include/Constants.h /^#define ATTRIBUTE_DDF_IND /;" d
ATTRIBUTE_FIT_H include/Constants.h /^#define ATTRIBUTE_FIT_H /;" d
ATTRIBUTE_ALG_H include/Constants.h /^#define ATTRIBUTE_ALG_H /;" d
ATTRIBUTE_FIT_T include/Constants.h /^#define ATTRIBUTE_FIT_T /;" d
ATTRIBUTE_ALG_T include/Constants.h /^#define ATTRIBUTE_ALG_T /;" d
ATTRIBUTE_LOOPS include/Constants.h /^#define ATTRIBUTE_LOOPS /;" d
ATTRIBUTE_EXPLAINED_I include/Constants.h /^#define ATTRIBUTE_EXPLAINED_I /;" d
ATTRIBUTE_AIC include/Constants.h /^#define ATTRIBUTE_AIC /;" d
ATTRIBUTE_BIC include/Constants.h /^#define ATTRIBUTE_BIC /;" d
ATTRIBUTE_BP_AIC include/Constants.h /^#define ATTRIBUTE_BP_AIC /;" d
ATTRIBUTE_BP_BIC include/Constants.h /^#define ATTRIBUTE_BP_BIC /;" d
ATTRIBUTE_UNEXPLAINED_I include/Constants.h /^#define ATTRIBUTE_UNEXPLAINED_I /;" d
ATTRIBUTE_T_FROM_H include/Constants.h /^#define ATTRIBUTE_T_FROM_H /;" d
ATTRIBUTE_IPF_ITERATIONS include/Constants.h /^#define ATTRIBUTE_IPF_ITERATIONS /;" d
ATTRIBUTE_IPF_ERROR include/Constants.h /^#define ATTRIBUTE_IPF_ERROR /;" d
ATTRIBUTE_PROCESSED include/Constants.h /^#define ATTRIBUTE_PROCESSED /;" d
ATTRIBUTE_IND_H include/Constants.h /^#define ATTRIBUTE_IND_H /;" d
ATTRIBUTE_DEP_H include/Constants.h /^#define ATTRIBUTE_DEP_H /;" d
ATTRIBUTE_COND_H include/Constants.h /^#define ATTRIBUTE_COND_H /;" d
ATTRIBUTE_COND_DH include/Constants.h /^#define ATTRIBUTE_COND_DH /;" d
ATTRIBUTE_COND_PCT_DH include/Constants.h /^#define ATTRIBUTE_COND_PCT_DH /;" d
ATTRIBUTE_COND_DF include/Constants.h /^#define ATTRIBUTE_COND_DF /;" d
ATTRIBUTE_COND_DDF include/Constants.h /^#define ATTRIBUTE_COND_DDF /;" d
ATTRIBUTE_TOTAL_LR include/Constants.h /^#define ATTRIBUTE_TOTAL_LR /;" d
ATTRIBUTE_IND_LR include/Constants.h /^#define ATTRIBUTE_IND_LR /;" d
ATTRIBUTE_COND_LR include/Constants.h /^#define ATTRIBUTE_COND_LR /;" d
ATTRIBUTE_COND_H_PROB include/Constants.h /^#define ATTRIBUTE_COND_H_PROB /;" d
ATTRIBUTE_P2 include/Constants.h /^#define ATTRIBUTE_P2 /;" d
ATTRIBUTE_P2_IND include/Constants.h /^#define ATTRIBUTE_P2_IND /;" d
ATTRIBUTE_P2_ALPHA_IND include/Constants.h /^#define ATTRIBUTE_P2_ALPHA_IND /;" d
ATTRIBUTE_P2_BETA_IND include/Constants.h /^#define ATTRIBUTE_P2_BETA_IND /;" d
ATTRIBUTE_P2_ALPHA_SAT include/Constants.h /^#define ATTRIBUTE_P2_ALPHA_SAT /;" d
ATTRIBUTE_P2_BETA_SAT include/Constants.h /^#define ATTRIBUTE_P2_BETA_SAT /;" d
ATTRIBUTE_P2_ALPHA include/Constants.h /^#define ATTRIBUTE_P2_ALPHA /;" d
ATTRIBUTE_P2_BETA include/Constants.h /^#define ATTRIBUTE_P2_BETA /;" d
ATTRIBUTE_LR include/Constants.h /^#define ATTRIBUTE_LR /;" d
ATTRIBUTE_LR_IND include/Constants.h /^#define ATTRIBUTE_LR_IND /;" d
ATTRIBUTE_ALPHA_IND include/Constants.h /^#define ATTRIBUTE_ALPHA_IND /;" d
ATTRIBUTE_BETA_IND include/Constants.h /^#define ATTRIBUTE_BETA_IND /;" d
ATTRIBUTE_ALPHA_SAT include/Constants.h /^#define ATTRIBUTE_ALPHA_SAT /;" d
ATTRIBUTE_BETA_SAT include/Constants.h /^#define ATTRIBUTE_BETA_SAT /;" d
ATTRIBUTE_ALPHA include/Constants.h /^#define ATTRIBUTE_ALPHA /;" d
ATTRIBUTE_BETA include/Constants.h /^#define ATTRIBUTE_BETA /;" d
ATTRIBUTE_INCR_ALPHA include/Constants.h /^#define ATTRIBUTE_INCR_ALPHA /;" d
ATTRIBUTE_INCR_ALPHA_REACHABLE include/Constants.h /^#define ATTRIBUTE_INCR_ALPHA_REACHABLE /;" d
ATTRIBUTE_PROG_ID include/Constants.h /^#define ATTRIBUTE_PROG_ID /;" d
ATTRIBUTE_MAX_REL_WIDTH include/Constants.h /^#define ATTRIBUTE_MAX_REL_WIDTH /;" d
ATTRIBUTE_MIN_REL_WIDTH include/Constants.h /^#define ATTRIBUTE_MIN_REL_WIDTH /;" d
ATTRIBUTE_BP_T include/Constants.h /^#define ATTRIBUTE_BP_T /;" d
ATTRIBUTE_BP_H include/Constants.h /^#define ATTRIBUTE_BP_H /;" d
ATTRIBUTE_BP_LR include/Constants.h /^#define ATTRIBUTE_BP_LR /;" d
ATTRIBUTE_BP_ALPHA include/Constants.h /^#define ATTRIBUTE_BP_ALPHA /;" d
ATTRIBUTE_BP_BETA include/Constants.h /^#define ATTRIBUTE_BP_BETA /;" d
ATTRIBUTE_BP_EXPLAINED_I include/Constants.h /^#define ATTRIBUTE_BP_EXPLAINED_I /;" d
ATTRIBUTE_BP_UNEXPLAINED_I include/Constants.h /^#define ATTRIBUTE_BP_UNEXPLAINED_I /;" d
ATTRIBUTE_BP_COND_H include/Constants.h /^#define ATTRIBUTE_BP_COND_H /;" d
ATTRIBUTE_BP_COND_DH include/Constants.h /^#define ATTRIBUTE_BP_COND_DH /;" d
ATTRIBUTE_BP_COND_PCT_DH include/Constants.h /^#define ATTRIBUTE_BP_COND_PCT_DH /;" d
ATTRIBUTE_PCT_CORRECT_DATA include/Constants.h /^#define ATTRIBUTE_PCT_CORRECT_DATA /;" d
ATTRIBUTE_PCT_COVERAGE include/Constants.h /^#define ATTRIBUTE_PCT_COVERAGE /;" d
ATTRIBUTE_PCT_CORRECT_TEST include/Constants.h /^#define ATTRIBUTE_PCT_CORRECT_TEST /;" d
ATTRIBUTE_PCT_MISSED_TEST include/Constants.h /^#define ATTRIBUTE_PCT_MISSED_TEST /;" d
___ManagerBase include/ManagerBase.h /^#define ___ManagerBase$/;" d
ocIntersectProcessor include/ManagerBase.h /^class ocIntersectProcessor {$/;" c
ocIntersectProcessor include/ManagerBase.h /^ ocIntersectProcessor() {$/;" f class:ocIntersectProcessor
~ocIntersectProcessor include/ManagerBase.h /^ virtual ~ocIntersectProcessor() {$/;" f class:ocIntersectProcessor
FitIntersectMap include/ManagerBase.h /^typedef map<Relation*, long long> FitIntersectMap;$/;" t
ManagerBase include/ManagerBase.h /^class ManagerBase {$/;" c
HMethod include/ManagerBase.h /^ enum HMethod {$/;" g class:ManagerBase
AUTO include/ManagerBase.h /^ AUTO, IPF, ALGEBRAIC$/;" e enum:ManagerBase::HMethod
IPF include/ManagerBase.h /^ AUTO, IPF, ALGEBRAIC$/;" e enum:ManagerBase::HMethod
ALGEBRAIC include/ManagerBase.h /^ AUTO, IPF, ALGEBRAIC$/;" e enum:ManagerBase::HMethod
getSearchDirection include/ManagerBase.h /^ Direction getSearchDirection() { return searchDirection; }$/;" f class:ManagerBase
getTopRefModel include/ManagerBase.h /^ virtual Model *getTopRefModel() {$/;" f class:ManagerBase
getBottomRefModel include/ManagerBase.h /^ virtual Model *getBottomRefModel() {$/;" f class:ManagerBase
getRefModel include/ManagerBase.h /^ virtual Model *getRefModel() {$/;" f class:ManagerBase
getUseInverseNotation include/ManagerBase.h /^ virtual int getUseInverseNotation() {$/;" f class:ManagerBase
getValuesAreFunctions include/ManagerBase.h /^ bool getValuesAreFunctions() {$/;" f class:ManagerBase
getFunctionConstant include/ManagerBase.h /^ double getFunctionConstant() {$/;" f class:ManagerBase
getNegativeConstant include/ManagerBase.h /^ double getNegativeConstant() {$/;" f class:ManagerBase
getKeySize include/ManagerBase.h /^ int getKeySize() {$/;" f class:ManagerBase
getSampleSz include/ManagerBase.h /^ double getSampleSz() {$/;" f class:ManagerBase
getTestSampleSize include/ManagerBase.h /^ double getTestSampleSize() {$/;" f class:ManagerBase
getVariableList include/ManagerBase.h /^ VariableList *getVariableList() {$/;" f class:ManagerBase
getRelCache include/ManagerBase.h /^ class RelCache *getRelCache() {$/;" f class:ManagerBase
getModelCache include/ManagerBase.h /^ class ModelCache *getModelCache() {$/;" f class:ManagerBase
getInputData include/ManagerBase.h /^ class Table *getInputData() {$/;" f class:ManagerBase
getTestData include/ManagerBase.h /^ class Table *getTestData() {$/;" f class:ManagerBase
setOptionString include/ManagerBase.h /^ bool setOptionString(ocOptionDef *def, const char *value) {$/;" f class:ManagerBase
setOptionFloat include/ManagerBase.h /^ bool setOptionFloat(ocOptionDef *def, double nvalue) {$/;" f class:ManagerBase
getOptionString include/ManagerBase.h /^ bool getOptionString(const char *name, void **next, const char **value) {$/;" f class:ManagerBase
getOptionFloat include/ManagerBase.h /^ bool getOptionFloat(const char *name, void **next, double *nvalue) {$/;" f class:ManagerBase
getFitTable include/ManagerBase.h /^ class Table *getFitTable() {$/;" f class:ManagerBase
alpha_threshold include/ManagerBase.h /^ double alpha_threshold = 0.05;$/;" m class:ManagerBase
topRef include/ManagerBase.h /^ Model *topRef;$/;" m class:ManagerBase
bottomRef include/ManagerBase.h /^ Model *bottomRef;$/;" m class:ManagerBase
refModel include/ManagerBase.h /^ Model *refModel;$/;" m class:ManagerBase
varList include/ManagerBase.h /^ VariableList *varList;$/;" m class:ManagerBase
keysize include/ManagerBase.h /^ int keysize;$/;" m class:ManagerBase
sampleSize include/ManagerBase.h /^ double sampleSize;$/;" m class:ManagerBase
testSampleSize include/ManagerBase.h /^ double testSampleSize;$/;" m class:ManagerBase
stateSpaceSize include/ManagerBase.h /^ unsigned long long stateSpaceSize;$/;" m class:ManagerBase
inputData include/ManagerBase.h /^ Table *inputData;$/;" m class:ManagerBase
testData include/ManagerBase.h /^ Table *testData;$/;" m class:ManagerBase
inputH include/ManagerBase.h /^ double inputH;$/;" m class:ManagerBase
relCache include/ManagerBase.h /^ class RelCache *relCache;$/;" m class:ManagerBase typeref:class:ManagerBase::RelCache
modelCache include/ManagerBase.h /^ class ModelCache *modelCache;$/;" m class:ManagerBase typeref:class:ManagerBase::ModelCache
options include/ManagerBase.h /^ class Options *options;$/;" m class:ManagerBase typeref:class:ManagerBase::Options
fitTable1 include/ManagerBase.h /^ Table *fitTable1;$/;" m class:ManagerBase
fitTable2 include/ManagerBase.h /^ Table *fitTable2;$/;" m class:ManagerBase
projTable include/ManagerBase.h /^ Table *projTable;$/;" m class:ManagerBase
dataLines include/ManagerBase.h /^ int dataLines;$/;" m class:ManagerBase
DVOrder include/ManagerBase.h /^ int *DVOrder;$/;" m class:ManagerBase
useInverseNotation include/ManagerBase.h /^ int useInverseNotation;$/;" m class:ManagerBase
intersectArray include/ManagerBase.h /^ VarIntersect *intersectArray;$/;" m class:ManagerBase
intersectCount include/ManagerBase.h /^ int intersectCount;$/;" m class:ManagerBase
intersectMax include/ManagerBase.h /^ int intersectMax;$/;" m class:ManagerBase
functionConstant include/ManagerBase.h /^ double functionConstant;$/;" m class:ManagerBase
negativeConstant include/ManagerBase.h /^ double negativeConstant;$/;" m class:ManagerBase
valuesAreFunctions include/ManagerBase.h /^ bool valuesAreFunctions;$/;" m class:ManagerBase
searchDirection include/ManagerBase.h /^ Direction searchDirection;$/;" m class:ManagerBase
___VarIntersect include/VarIntersect.h /^#define ___VarIntersect$/;" d
VarIntersect include/VarIntersect.h /^struct VarIntersect {$/;" s
startIndex include/VarIntersect.h /^ int startIndex; \/\/ the highest numbered relation index this intersection term represents$/;" m struct:VarIntersect
rel include/VarIntersect.h /^ Relation *rel;$/;" m struct:VarIntersect
sign include/VarIntersect.h /^ bool sign;$/;" m struct:VarIntersect
count include/VarIntersect.h /^ int count;$/;" m struct:VarIntersect
VarIntersect include/VarIntersect.h /^ VarIntersect() :$/;" f struct:VarIntersect
___Report include/Report.h /^#define ___Report$/;" d
equals_sign include/Report.h /^constexpr const char* equals_sign(bool html) {$/;" f
not_equals_sign include/Report.h /^constexpr const char* not_equals_sign(bool html) { $/;" f
dv_Data include/Report.h /^class dv_Data{$/;" c
key include/Report.h /^ KeySegment **key;$/;" m class:dv_Data
dv_value include/Report.h /^ char **dv_value;$/;" m class:dv_Data
cdv_value include/Report.h /^ double **cdv_value;$/;" m class:dv_Data
t_freq include/Report.h /^ double *t_freq;$/;" m class:dv_Data
dv_freq include/Report.h /^ int *dv_freq;$/;" m class:dv_Data
num_correct include/Report.h /^ double *num_correct;$/;" m class:dv_Data
percent_correct include/Report.h /^ double *percent_correct;$/;" m class:dv_Data
rule_index include/Report.h /^ int *rule_index;$/;" m class:dv_Data
Report include/Report.h /^class Report {$/;" c
bestModelName include/Report.h /^ const char* bestModelName() { return models[0]->getPrintName(); }$/;" f class:Report
setSeparator include/Report.h /^ void setSeparator(int sep) { separator = sep; }$/;" f class:Report
isHTMLMode include/Report.h /^ static bool isHTMLMode() {return htmlMode; }$/;" f class:Report
setHTMLMode include/Report.h /^ static void setHTMLMode(bool mode) { htmlMode = mode; }$/;" f class:Report
maxNameLength include/Report.h /^ static int maxNameLength;$/;" m class:Report
manager include/Report.h /^ class ManagerBase *manager;$/;" m class:Report typeref:class:Report::ManagerBase
htmlMode include/Report.h /^ static bool htmlMode;$/;" m class:Report
models include/Report.h /^ Model **models;$/;" m class:Report
defaultFitModel include/Report.h /^ Model *defaultFitModel;$/;" m class:Report
attrs include/Report.h /^ char **attrs;$/;" m class:Report
modelCount include/Report.h /^ long modelCount, maxModelCount;$/;" m class:Report
maxModelCount include/Report.h /^ long modelCount, maxModelCount;$/;" m class:Report
attrCount include/Report.h /^ long attrCount;$/;" m class:Report
separator include/Report.h /^ int separator;$/;" m class:Report
___Model include/Model.h /^#define ___Model$/;" d
Model include/Model.h /^class Model {$/;" c
getAttributeList include/Model.h /^ class AttributeList *getAttributeList() {$/;" f class:Model
getHashNext include/Model.h /^ Model *getHashNext() {$/;" f class:Model
setHashNext include/Model.h /^ void setHashNext(Model *next) {$/;" f class:Model
getProgenitor include/Model.h /^ Model *getProgenitor() {$/;" f class:Model
setProgenitor include/Model.h /^ void setProgenitor(Model *model) {$/;" f class:Model
getID include/Model.h /^ int getID() {$/;" f class:Model
setID include/Model.h /^ void setID(int number) {$/;" f class:Model
relations include/Model.h /^ Relation **relations;$/;" m class:Model
progenitor include/Model.h /^ Model *progenitor; \/\/ the model from which this one was derived in a search$/;" m class:Model
ID include/Model.h /^ int ID; \/\/ ID of the model in a search list$/;" m class:Model
relationCount include/Model.h /^ int relationCount;$/;" m class:Model
maxRelationCount include/Model.h /^ int maxRelationCount;$/;" m class:Model
fitTable include/Model.h /^ class Table *fitTable;$/;" m class:Model typeref:class:Model::Table
attributeList include/Model.h /^ class AttributeList *attributeList;$/;" m class:Model typeref:class:Model::AttributeList
hashNext include/Model.h /^ Model *hashNext;$/;" m class:Model
printName include/Model.h /^ char *printName;$/;" m class:Model
inverseName include/Model.h /^ char *inverseName;$/;" m class:Model
structMatrix include/Model.h /^ int **structMatrix;$/;" m class:Model
totalConstraints include/Model.h /^ long totalConstraints;$/;" m class:Model
stateSpaceSize include/Model.h /^ int stateSpaceSize;$/;" m class:Model
___Math include/Math.h /^#define ___Math$/;" d
___Table include/Table.h /^#define ___Table$/;" d
Table include/Table.h /^class Table {$/;" c
getTupleCount include/Table.h /^ long long getTupleCount() {$/;" f class:Table
getKeySize include/Table.h /^ int getKeySize() {$/;" f class:Table
data include/Table.h /^ void* data; \/\/ storage for all keys and values$/;" m class:Table
keysize include/Table.h /^ int keysize; \/\/ number of key segments in the key for each tuple$/;" m class:Table
tupleCount include/Table.h /^ long long tupleCount; \/\/ number of tuples in the tuple array$/;" m class:Table
maxTupleCount include/Table.h /^ long long maxTupleCount; \/\/ the total size of the data member, in terms of tuples$/;" m class:Table
type include/Table.h /^ TableType type; \/\/ one of INFO_TYPE, SET_TYPE$/;" m class:Table
tableIteration include/Table.h /^void tableIteration(Table* input_table, VariableList* varlist, Relation* rel,$/;" f
tableKVIteration include/Table.h /^void tableKVIteration(Table* table, VariableList* varlist, long var_count, F action) {$/;" f
___Core include/_Core.h /^#define ___Core$/;" d
fmax include/_Core.h /^#define fmax(/;" d
growStorage include/_Core.h /^#define growStorage(/;" d
___Search include/Search.h /^#define ___Search$/;" d
SearchFullDown include/Search.h /^class SearchFullDown : public SearchBase {$/;" c
SearchFullDown include/Search.h /^ SearchFullDown() {};$/;" f class:SearchFullDown
~SearchFullDown include/Search.h /^ virtual ~SearchFullDown() {};$/;" f class:SearchFullDown
make include/Search.h /^ static SearchBase *make() { return new SearchFullDown(); }$/;" f class:SearchFullDown
SearchFullUp include/Search.h /^class SearchFullUp : public SearchBase {$/;" c
SearchFullUp include/Search.h /^ SearchFullUp(): parentList(0), parentListCount(0), parentListMax(0) {};$/;" f class:SearchFullUp
~SearchFullUp include/Search.h /^ virtual ~SearchFullUp() {};$/;" f class:SearchFullUp
make include/Search.h /^ static SearchBase *make() { return new SearchFullUp(); }$/;" f class:SearchFullUp
parentList include/Search.h /^ Model **parentList;$/;" m class:SearchFullUp
parentListCount include/Search.h /^ long parentListCount;$/;" m class:SearchFullUp
parentListMax include/Search.h /^ long parentListMax;$/;" m class:SearchFullUp
SearchLooplessDown include/Search.h /^class SearchLooplessDown : public SearchBase {$/;" c
SearchLooplessDown include/Search.h /^ SearchLooplessDown() {};$/;" f class:SearchLooplessDown
~SearchLooplessDown include/Search.h /^ virtual ~SearchLooplessDown() {};$/;" f class:SearchLooplessDown
make include/Search.h /^ static SearchBase *make() { return new SearchLooplessDown(); }$/;" f class:SearchLooplessDown
SearchSbFullUp include/Search.h /^class SearchSbFullUp : public SearchBase {$/;" c
SearchSbFullUp include/Search.h /^ SearchSbFullUp() {};$/;" f class:SearchSbFullUp
~SearchSbFullUp include/Search.h /^ virtual ~SearchSbFullUp() {};$/;" f class:SearchSbFullUp
make include/Search.h /^ static SearchBase *make() { return new SearchSbFullUp(); }$/;" f class:SearchSbFullUp
SearchSbLooplessUp include/Search.h /^class SearchSbLooplessUp : public SearchBase {$/;" c
SearchSbLooplessUp include/Search.h /^ SearchSbLooplessUp() {};$/;" f class:SearchSbLooplessUp
~SearchSbLooplessUp include/Search.h /^ virtual ~SearchSbLooplessUp() {};$/;" f class:SearchSbLooplessUp
make include/Search.h /^ static SearchBase *make() { return new SearchSbLooplessUp(); }$/;" f class:SearchSbLooplessUp
SearchLooplessUp include/Search.h /^class SearchLooplessUp : public SearchBase {$/;" c
SearchLooplessUp include/Search.h /^ SearchLooplessUp() {};$/;" f class:SearchLooplessUp
~SearchLooplessUp include/Search.h /^ virtual ~SearchLooplessUp() {};$/;" f class:SearchLooplessUp
make include/Search.h /^ static SearchBase *make() { return new SearchLooplessUp(); }$/;" f class:SearchLooplessUp
SearchDisjointUp include/Search.h /^class SearchDisjointUp : public SearchBase {$/;" c
SearchDisjointUp include/Search.h /^ SearchDisjointUp() {};$/;" f class:SearchDisjointUp
~SearchDisjointUp include/Search.h /^ virtual ~SearchDisjointUp() {};$/;" f class:SearchDisjointUp
make include/Search.h /^ static SearchBase *make() { return new SearchDisjointUp(); }$/;" f class:SearchDisjointUp
SearchDisjointDown include/Search.h /^class SearchDisjointDown : public SearchBase {$/;" c
make include/Search.h /^ static SearchBase *make() { return new SearchDisjointDown();}$/;" f class:SearchDisjointDown
SearchChain include/Search.h /^class SearchChain : public SearchBase {$/;" c
SearchChain include/Search.h /^ SearchChain() {};$/;" f class:SearchChain
~SearchChain include/Search.h /^ virtual ~SearchChain() {};$/;" f class:SearchChain
make include/Search.h /^ static SearchBase *make() { return new SearchChain(); }$/;" f class:SearchChain
varCount include/Search.h /^ int varCount; \/\/ variables in model$/;" m class:SearchChain
slot include/Search.h /^ int slot; \/\/ next position in models$/;" m class:SearchChain
maxChildren include/Search.h /^ int maxChildren; \/\/size of models array, precomputed$/;" m class:SearchChain
models include/Search.h /^ Model **models; \/\/ place to put generated models$/;" m class:SearchChain
varStack include/Search.h /^ int *varStack; \/\/ stack of variables for recursion$/;" m class:SearchChain
stackPtr include/Search.h /^ int stackPtr; \/\/ current position in varStack$/;" m class:SearchChain
depVar include/Search.h /^ int depVar; \/\/ index of the dependent variable, -1 for neutral systems$/;" m class:SearchChain
indOnlyRel include/Search.h /^ Relation *indOnlyRel; \/\/ index of IV relation, -1 for neutral systems$/;" m class:SearchChain
isDirected include/Search.h /^ bool isDirected;$/;" m class:SearchChain
___RelationCache include/RelCache.h /^#define ___RelationCache$/;" d
RELCACHE_HASHSIZE include/RelCache.h /^#define RELCACHE_HASHSIZE /;" d
RelCache include/RelCache.h /^class RelCache {$/;" c
hash include/RelCache.h /^ class Relation **hash;$/;" m class:RelCache typeref:class:RelCache::Relation
SBMManager cpp/SBMManager.cpp /^SBMManager::SBMManager(VariableList *vars, Table *input) :$/;" f class:SBMManager
SBMManager cpp/SBMManager.cpp /^SBMManager::SBMManager() :$/;" f class:SBMManager
~SBMManager cpp/SBMManager.cpp /^SBMManager::~SBMManager() {$/;" f class:SBMManager
initFromCommandLine cpp/SBMManager.cpp /^bool SBMManager::initFromCommandLine(int argc, char **argv) {$/;" f class:SBMManager
verifyStateBasedNaming cpp/SBMManager.cpp /^void SBMManager::verifyStateBasedNaming() {$/;" f class:SBMManager
makeReferenceModels cpp/SBMManager.cpp /^void SBMManager::makeReferenceModels(Relation *top) {$/;" f class:SBMManager
setRefModel cpp/SBMManager.cpp /^Model *SBMManager::setRefModel(const char *name) {$/;" f class:SBMManager
computeExplainedInformation cpp/SBMManager.cpp /^double SBMManager::computeExplainedInformation(Model *model) {$/;" f class:SBMManager
computeUnexplainedInformation cpp/SBMManager.cpp /^double SBMManager::computeUnexplainedInformation(Model *model) {$/;" f class:SBMManager
computeDDF cpp/SBMManager.cpp /^double SBMManager::computeDDF(Model *model) {$/;" f class:SBMManager
setSearch cpp/SBMManager.cpp /^void SBMManager::setSearch(const char *name) {$/;" f class:SBMManager
computeDFStatistics cpp/SBMManager.cpp /^void SBMManager::computeDFStatistics(Model *model) {$/;" f class:SBMManager
computeInformationStatistics cpp/SBMManager.cpp /^void SBMManager::computeInformationStatistics(Model *model) {$/;" f class:SBMManager
computeL2Statistics cpp/SBMManager.cpp /^void SBMManager::computeL2Statistics(Model *model) {$/;" f class:SBMManager
computePearsonStatistics cpp/SBMManager.cpp /^void SBMManager::computePearsonStatistics(Model *model) {$/;" f class:SBMManager
computeDependentStatistics cpp/SBMManager.cpp /^void SBMManager::computeDependentStatistics(Model *model) {$/;" f class:SBMManager
computeBPStatistics cpp/SBMManager.cpp /^void SBMManager::computeBPStatistics(Model *model) {$/;" f class:SBMManager
computePercentCorrect cpp/SBMManager.cpp /^void SBMManager::computePercentCorrect(Model *model) {$/;" f class:SBMManager
setFilter cpp/SBMManager.cpp /^void SBMManager::setFilter(const char *attrname, double attrvalue, RelOp op) {$/;" f class:SBMManager
applyFilter cpp/SBMManager.cpp /^bool SBMManager::applyFilter(Model *model) {$/;" f class:SBMManager
setSortAttr cpp/SBMManager.cpp /^void SBMManager::setSortAttr(const char *name) {$/;" f class:SBMManager
printRefTable cpp/SBMManager.cpp /^static void printRefTable(Model *model, FILE *fd, const char *ref, const char **strings,$/;" f file:
printFitReport cpp/SBMManager.cpp /^void SBMManager::printFitReport(Model *model, FILE *fd) {$/;" f class:SBMManager
printBasicStatistics cpp/SBMManager.cpp /^void SBMManager::printBasicStatistics() {$/;" f class:SBMManager
LostVar cpp/Input.cpp /^struct LostVar {$/;" s file:
num cpp/Input.cpp /^ int num;$/;" m struct:LostVar file:
ValidList cpp/Input.cpp /^ char * ValidList[MAXCARDINALITY];$/;" m struct:LostVar file:
all cpp/Input.cpp /^ int all; \/\/flag to mark if all values are valid$/;" m struct:LostVar file:
next cpp/Input.cpp /^ LostVar *next;$/;" m struct:LostVar file:
isLostVar cpp/Input.cpp /^bool isLostVar(int i, LostVar ** varp, LostVar *lostvarp) {$/;" f
KeepVal cpp/Input.cpp /^bool KeepVal(LostVar *lostvarpt, char * var) {$/;" f
ocReadData cpp/Input.cpp /^long ocReadData(FILE *fin, VariableList *vars, Table *indata, LostVar *lostvarp) {$/;" f
ocDefineVariables cpp/Input.cpp /^void ocDefineVariables(Options *options, VariableList *vars) {$/;" f
ocRebinDefineVar cpp/Input.cpp /^void ocRebinDefineVar(Options *options, VariableList *vars, LostVar ** lostvarp) {$/;" f
ocReadFile cpp/Input.cpp /^int ocReadFile(FILE *fd, Options *options, Table **indata, Table **testdata, VariableList **vars) {$/;" f
attrDescCount cpp/Report.cpp /^int attrDescCount = sizeof(attrDescriptions) \/ sizeof(attrDesc);$/;" v
htmlMode cpp/Report.cpp /^bool Report::htmlMode = false;$/;" m class:Report file:
maxNameLength cpp/Report.cpp /^int Report::maxNameLength;$/;" m class:Report file:
Report cpp/Report.cpp /^Report::Report(class ManagerBase *mgr) {$/;" f class:Report
~Report cpp/Report.cpp /^Report::~Report() {$/;" f class:Report
addModel cpp/Report.cpp /^void Report::addModel(class Model *model) {$/;" f class:Report
setDefaultFitModel cpp/Report.cpp /^void Report::setDefaultFitModel(class Model *model) {$/;" f class:Report
setAttributes cpp/Report.cpp /^void Report::setAttributes(const char *attrlist) {$/;" f class:Report
sort cpp/Report.cpp /^void Report::sort(const char *attr, Direction dir) {$/;" f class:Report
sort cpp/Report.cpp /^void Report::sort(class Model** models, long modelCount, const char *attr, Direction dir) {$/;" f class:Report
print cpp/Report.cpp /^void Report::print(FILE *fd) {$/;" f class:Report
printSearchHeader cpp/Report.cpp /^void Report::printSearchHeader(FILE *fd, int* attrID) {$/;" f class:Report
printSearchRow cpp/Report.cpp /^void Report::printSearchRow(FILE *fd, Model* model, int* attrID, bool isOddRow) {$/;" f class:Report
print cpp/Report.cpp /^void Report::print(int fd) {$/;" f class:Report
printd cpp/Report.cpp /^void printd(double d) {$/;" f
printConfusionMatrixHTML cpp/Report.cpp /^void printConfusionMatrixHTML(const char* dv_name, const char* dv_target, double tp, double fp, double tn, double fn) {$/;" f
printConfusionMatrixStatsHTML cpp/Report.cpp /^void printConfusionMatrixStatsHTML(const char* dv_name, const char* dv_target, double tp, double fp, double tn, double fn) {$/;" f
printConfusionMatrixCSV cpp/Report.cpp /^void printConfusionMatrixCSV(const char* dv_name, const char* dv_target, double tp, double fp, double tn, double fn) {$/;" f
printConfusionMatrixStatsCSV cpp/Report.cpp /^void printConfusionMatrixStatsCSV(const char* dv_name, const char* dv_target, double tp, double fp, double tn, double fn) {$/;" f
printConfusionMatrix cpp/Report.cpp /^void Report::printConfusionMatrix(Model* model, Relation* rel, $/;" f class:Report
GROWTH_FACTOR cpp/Table.cpp /^const long long GROWTH_FACTOR = 2;$/;" v
TupleBytes cpp/Table.cpp /^#define TupleBytes /;" d file:
ValuePtr cpp/Table.cpp /^static ocTupleValue *ValuePtr(void *data, int keysize, long long index)$/;" f file:
KeyPtr cpp/Table.cpp /^static KeySegment *KeyPtr(void *data, int keysize, long long index)$/;" f file:
Table cpp/Table.cpp /^Table::Table(int keysz, long long maxTuples, TableType typ)$/;" f class:Table
~Table cpp/Table.cpp /^Table::~Table()$/;" f class:Table
size cpp/Table.cpp /^long long Table::size()$/;" f class:Table
copy cpp/Table.cpp /^void Table::copy(const Table* from)$/;" f class:Table
addTuple cpp/Table.cpp /^void Table::addTuple(KeySegment *key, double value)$/;" f class:Table
insertTuple cpp/Table.cpp /^void Table::insertTuple(KeySegment *key, double value, long long index)$/;" f class:Table
sumTuple cpp/Table.cpp /^void Table::sumTuple(KeySegment *key, double value)$/;" f class:Table
getValue cpp/Table.cpp /^double Table::getValue(long long index)$/;" f class:Table
setValue cpp/Table.cpp /^void Table::setValue(long long index, double value)$/;" f class:Table
getKey cpp/Table.cpp /^KeySegment *Table::getKey(long long index)$/;" f class:Table
copyKey cpp/Table.cpp /^void Table::copyKey(long long index, KeySegment *key)$/;" f class:Table
indexOf cpp/Table.cpp /^long long Table::indexOf(KeySegment *key, bool matchOnly)$/;" f class:Table
sortKeySize cpp/Table.cpp /^static int sortKeySize; \/\/ must be set before calling sortCompare$/;" v file:
sortCompare cpp/Table.cpp /^static int sortCompare(const void *k1, const void *k2)$/;" f file:
sort cpp/Table.cpp /^void Table::sort()$/;" f class:Table
normalize cpp/Table.cpp /^double Table::normalize()$/;" f class:Table
addConstant cpp/Table.cpp /^void Table::addConstant(double constant)$/;" f class:Table
getLowestValue cpp/Table.cpp /^double Table::getLowestValue()$/;" f class:Table
reset cpp/Table.cpp /^void Table::reset(int keysize)$/;" f class:Table
dump cpp/Table.cpp /^void Table::dump(bool detail)$/;" f class:Table
hashcode cpp/RelCache.cpp /^static int hashcode(const char *name, int hashsize) {$/;" f file:
RelCache cpp/RelCache.cpp /^RelCache::RelCache() {$/;" f class:RelCache
~RelCache cpp/RelCache.cpp /^RelCache::~RelCache() {$/;" f class:RelCache
size cpp/RelCache.cpp /^long RelCache::size() {$/;" f class:RelCache
deleteTables cpp/RelCache.cpp /^void RelCache::deleteTables() {$/;" f class:RelCache
addRelation cpp/RelCache.cpp /^bool RelCache::addRelation(class Relation *rel) {$/;" f class:RelCache
findRelation cpp/RelCache.cpp /^class Relation *RelCache::findRelation(const char *name) {$/;" f class:RelCache
dump cpp/RelCache.cpp /^void RelCache::dump() {$/;" f class:RelCache
SHELL cpp/Makefile /^SHELL = \/bin\/sh$/;" m
CC cpp/Makefile /^CC = gcc$/;" m
CFLAGS cpp/Makefile /^CFLAGS = -w -Wall -O3 -fPIC -std=c++11 -I ..\/include -frounding-math -fsignaling-nans -fsigned-zeros -fno-finite-math-only -msse2 -mfpmath=sse$/;" m
LFLAGS cpp/Makefile /^LFLAGS = -shared$/;" m
AR cpp/Makefile /^AR = ar$/;" m
COMPILE cpp/Makefile /^COMPILE = $(CC) $(CFLAGS)$/;" m
PY_INCLUDE cpp/Makefile /^PY_INCLUDE = \/usr\/include\/python2.7$/;" m
CL cpp/Makefile /^CL = occ$/;" m
RANLIB cpp/Makefile /^RANLIB = ranlib$/;" m
LDFLAGS cpp/Makefile /^LDFLAGS = -lm -lstdc++ -lgmp$/;" m
PY cpp/Makefile /^PY = pyoccam.cpp$/;" m
DYLIB cpp/Makefile /^DYLIB = occam.so$/;" m
LIB cpp/Makefile /^LIB = liboccam3.a$/;" m
LIBOBJECTS cpp/Makefile /^LIBOBJECTS = \\$/;" m
ocEntropy cpp/Math.cpp /^double ocEntropy(Table *p) {$/;" f
ocTransmission cpp/Math.cpp /^double ocTransmission(Table *p, Table *q) {$/;" f
ocPearsonChiSquaredFlat cpp/Math.cpp /^double ocPearsonChiSquaredFlat(int card, double* p, double* q, long sampleSize) {$/;" f
ocPearsonChiSquared cpp/Math.cpp /^double ocPearsonChiSquared(Table *p, Table *q, long sampleSize) {$/;" f
ocDegreesOfFreedom cpp/Math.cpp /^double ocDegreesOfFreedom(Relation *rel) {$/;" f
ocDegreesOfFreedom cpp/Math.cpp /^double ocDegreesOfFreedom(VariableList *varList) {$/;" f
ocDegreesOfFreedom cpp/Math.cpp /^double ocDegreesOfFreedom(VariableList *varList, int *variables, int varCount) {$/;" f
ocHasOverlaps cpp/Math.cpp /^bool ocHasOverlaps(Model *model) {$/;" f
VarList cpp/Math.cpp /^struct VarList {$/;" s file:
varCount cpp/Math.cpp /^ int varCount;$/;" m struct:VarList file:
vars cpp/Math.cpp /^ int *vars;$/;" m struct:VarList file:
VarList cpp/Math.cpp /^ VarList() :$/;" f struct:VarList
~VarList cpp/Math.cpp /^ ~VarList() {$/;" f struct:VarList
setVars cpp/Math.cpp /^ void setVars(int *newVars) {$/;" f struct:VarList
VLCopy cpp/Math.cpp /^static void VLCopy(VarList &from, VarList &to) {$/;" f file:
VLComplement cpp/Math.cpp /^static void VLComplement(VarList &v1, VarList &v2) {$/;" f file:
VLContains cpp/Math.cpp /^static bool VLContains(VarList &v1, VarList &v2) {$/;" f file:
isSuperset cpp/Math.cpp /^bool isSuperset(bool *first, bool *second, int length) {$/;" f
ocSbHasLoops cpp/Math.cpp /^bool ocSbHasLoops(Model *model) {$/;" f
ocHasLoops cpp/Math.cpp /^bool ocHasLoops(Model *model) {$/;" f
ocLR cpp/Math.cpp /^double ocLR(double sample, double df, double h) {$/;" f
LnGamma cpp/Math.cpp /^double LnGamma(double xx) {$/;" f
signgam cpp/Math.cpp /^int signgam;$/;" v
CHIC_ITMAX cpp/Math.cpp /^#define CHIC_ITMAX /;" d file:
CHIC_EPS cpp/Math.cpp /^#define CHIC_EPS /;" d file:
chic cpp/Math.cpp /^double chic(double x2, double df) {$/;" f
ZERO cpp/Math.cpp /^#define ZERO /;" d file:
ONE cpp/Math.cpp /^#define ONE /;" d file:
TWO cpp/Math.cpp /^#define TWO /;" d file:
THIRD cpp/Math.cpp /^#define THIRD /;" d file:
NINE cpp/Math.cpp /^#define NINE /;" d file:
PREC cpp/Math.cpp /^#define PREC /;" d file:
CHIN2_EPS cpp/Math.cpp /^#define CHIN2_EPS /;" d file:
CHIN2_ITMAX cpp/Math.cpp /^#define CHIN2_ITMAX /;" d file:
A cpp/Math.cpp /^#define A /;" d file:
B cpp/Math.cpp /^#define B /;" d file:
FALSE cpp/Math.cpp /^#define FALSE /;" d file:
TRUE cpp/Math.cpp /^#define TRUE /;" d file:
chin2 cpp/Math.cpp /^double chin2(double x, double df, double theta, int *ifault) {$/;" f
UFLO cpp/Math.cpp /^#define UFLO /;" d file:
OFLO cpp/Math.cpp /^#define OFLO /;" d file:
A cpp/Math.cpp /^#define A /;" d file:
B cpp/Math.cpp /^#define B /;" d file:
csa cpp/Math.cpp /^double csa(double x, double df) {$/;" f
ZERO cpp/Math.cpp /^#define ZERO /;" d file:
HALF cpp/Math.cpp /^#define HALF /;" d file:
ONE cpp/Math.cpp /^#define ONE /;" d file:
NSPLIT cpp/Math.cpp /^#define NSPLIT /;" d file:
NA0 cpp/Math.cpp /^#define NA0 /;" d file:
NA1 cpp/Math.cpp /^#define NA1 /;" d file:
NA2 cpp/Math.cpp /^#define NA2 /;" d file:
NA3 cpp/Math.cpp /^#define NA3 /;" d file:
NB1 cpp/Math.cpp /^#define NB1 /;" d file:
NB2 cpp/Math.cpp /^#define NB2 /;" d file:
NB3 cpp/Math.cpp /^#define NB3 /;" d file:
NB4 cpp/Math.cpp /^#define NB4 /;" d file:
NC0 cpp/Math.cpp /^#define NC0 /;" d file:
NC1 cpp/Math.cpp /^#define NC1 /;" d file:
NC2 cpp/Math.cpp /^#define NC2 /;" d file:
NC3 cpp/Math.cpp /^#define NC3 /;" d file:
ND1 cpp/Math.cpp /^#define ND1 /;" d file:
ND2 cpp/Math.cpp /^#define ND2 /;" d file:
ppnorm cpp/Math.cpp /^static double ppnorm(double prob, int *ifault) {$/;" f file:
E cpp/Math.cpp /^#define E /;" d file:
gammds cpp/Math.cpp /^double gammds(double y, double p, int *ifault) {$/;" f
PPCHI_EPS cpp/Math.cpp /^#define PPCHI_EPS /;" d file:
PMIN cpp/Math.cpp /^#define PMIN /;" d file:
PMAX cpp/Math.cpp /^#define PMAX /;" d file:
TWO cpp/Math.cpp /^#define TWO /;" d file:
THREE cpp/Math.cpp /^#define THREE /;" d file:
SIX cpp/Math.cpp /^#define SIX /;" d file:
C1 cpp/Math.cpp /^#define C1 /;" d file:
C2 cpp/Math.cpp /^#define C2 /;" d file:
C3 cpp/Math.cpp /^#define C3 /;" d file:
C4 cpp/Math.cpp /^#define C4 /;" d file:
C5 cpp/Math.cpp /^#define C5 /;" d file:
C6 cpp/Math.cpp /^#define C6 /;" d file:
C7 cpp/Math.cpp /^#define C7 /;" d file:
C8 cpp/Math.cpp /^#define C8 /;" d file:
C9 cpp/Math.cpp /^#define C9 /;" d file:
C10 cpp/Math.cpp /^#define C10 /;" d file:
C11 cpp/Math.cpp /^#define C11 /;" d file:
C12 cpp/Math.cpp /^#define C12 /;" d file:
C13 cpp/Math.cpp /^#define C13 /;" d file:
C14 cpp/Math.cpp /^#define C14 /;" d file:
C15 cpp/Math.cpp /^#define C15 /;" d file:
C16 cpp/Math.cpp /^#define C16 /;" d file:
C17 cpp/Math.cpp /^#define C17 /;" d file:
C18 cpp/Math.cpp /^#define C18 /;" d file:
C19 cpp/Math.cpp /^#define C19 /;" d file:
C20 cpp/Math.cpp /^#define C20 /;" d file:
C21 cpp/Math.cpp /^#define C21 /;" d file:
C22 cpp/Math.cpp /^#define C22 /;" d file:
C23 cpp/Math.cpp /^#define C23 /;" d file:
C24 cpp/Math.cpp /^#define C24 /;" d file:
C25 cpp/Math.cpp /^#define C25 /;" d file:
C26 cpp/Math.cpp /^#define C26 /;" d file:
C27 cpp/Math.cpp /^#define C27 /;" d file:
C28 cpp/Math.cpp /^#define C28 /;" d file:
C29 cpp/Math.cpp /^#define C29 /;" d file:
C30 cpp/Math.cpp /^#define C30 /;" d file:
C31 cpp/Math.cpp /^#define C31 /;" d file:
C32 cpp/Math.cpp /^#define C32 /;" d file:
C33 cpp/Math.cpp /^#define C33 /;" d file:
C34 cpp/Math.cpp /^#define C34 /;" d file:
C35 cpp/Math.cpp /^#define C35 /;" d file:
C36 cpp/Math.cpp /^#define C36 /;" d file:
C37 cpp/Math.cpp /^#define C37 /;" d file:
C38 cpp/Math.cpp /^#define C38 /;" d file:
ppchi cpp/Math.cpp /^double ppchi(double p, double df, int *ifault) {$/;" f
LTONE cpp/Math.cpp /^#define LTONE /;" d file:
UTZERO cpp/Math.cpp /^#define UTZERO /;" d file:
ZERO cpp/Math.cpp /^#define ZERO /;" d file:
HALF cpp/Math.cpp /^#define HALF /;" d file:
ONE cpp/Math.cpp /^#define ONE /;" d file:
CON cpp/Math.cpp /^#define CON /;" d file:
A1 cpp/Math.cpp /^#define A1 /;" d file:
A2 cpp/Math.cpp /^#define A2 /;" d file:
A3 cpp/Math.cpp /^#define A3 /;" d file:
A4 cpp/Math.cpp /^#define A4 /;" d file:
A5 cpp/Math.cpp /^#define A5 /;" d file:
A6 cpp/Math.cpp /^#define A6 /;" d file:
A7 cpp/Math.cpp /^#define A7 /;" d file:
B1 cpp/Math.cpp /^#define B1 /;" d file:
B2 cpp/Math.cpp /^#define B2 /;" d file:
B3 cpp/Math.cpp /^#define B3 /;" d file:
B4 cpp/Math.cpp /^#define B4 /;" d file:
B5 cpp/Math.cpp /^#define B5 /;" d file:
B6 cpp/Math.cpp /^#define B6 /;" d file:
B7 cpp/Math.cpp /^#define B7 /;" d file:
B8 cpp/Math.cpp /^#define B8 /;" d file:
B9 cpp/Math.cpp /^#define B9 /;" d file:
B10 cpp/Math.cpp /^#define B10 /;" d file:
B11 cpp/Math.cpp /^#define B11 /;" d file:
B12 cpp/Math.cpp /^#define B12 /;" d file:
anorm cpp/Math.cpp /^double anorm(double x, int upper) {$/;" f
CHISTAT_EPS cpp/Math.cpp /^#define CHISTAT_EPS /;" d file:
MIN_PROB cpp/Math.cpp /^#define MIN_PROB /;" d file:
chistat cpp/Math.cpp /^unsigned chistat(unsigned ntab, double* obs, double* fit, double* g2_ptr, double* p2_ptr) {$/;" f
ocDegreesOfFreedomStateBased cpp/Math.cpp /^double ocDegreesOfFreedomStateBased(Model *model) {$/;" f
SearchType cpp/SearchBase.cpp /^struct SearchType {$/;" s file:
name cpp/SearchBase.cpp /^ const char *name;$/;" m struct:SearchType file:
make cpp/SearchBase.cpp /^ SearchBase * (*make)();$/;" m struct:SearchType file:
searchTypes cpp/SearchBase.cpp /^SearchType searchTypes[] = {$/;" v
SearchBase cpp/SearchBase.cpp /^SearchBase::SearchBase(): manager(0), directed(false)$/;" f class:SearchBase
~SearchBase cpp/SearchBase.cpp /^SearchBase::~SearchBase()$/;" f class:SearchBase
search cpp/SearchBase.cpp /^Model **SearchBase::search(Model *start)$/;" f class:SearchBase
getSearchMethod cpp/SearchBase.cpp /^SearchBase* SearchFactory::getSearchMethod(ManagerBase *mgr, const char *name, bool proj)$/;" f class:SearchFactory
LOG_MEMORY cpp/_Core.cpp /^#undef LOG_MEMORY$/;" d file:
memlog cpp/_Core.cpp /^const char *memlog = "memusage.log";$/;" v
mlogfd cpp/_Core.cpp /^static FILE *mlogfd = fopen(memlog, "w");$/;" v file:
logMemory cpp/_Core.cpp /^void logMemory(void *old, unsigned long long oldSize, long factor, const char *file, long line)$/;" f
logMemory cpp/_Core.cpp /^void logMemory(void *old, unsigned long long oldSize, long factor, const char *file, long line)$/;" f
_growStorage cpp/_Core.cpp /^void *_growStorage(void *old, unsigned long long oldSize, long factor, const char *file, long line)$/;" f
ocCompareVariables cpp/_Core.cpp /^int ocCompareVariables(int varCount1, int *var1, int varCount2, int *var2)$/;" f
ocContainsVariables cpp/_Core.cpp /^bool ocContainsVariables(int varCount1, int *var1, int varCount2, int *var2)$/;" f
ocContainsStates cpp/_Core.cpp /^bool ocContainsStates(int var_count1, int *var1, int *states1, int var_count2, int *var2, int *states2)$/;" f
hashcode cpp/ModelCache.cpp /^static int hashcode(const char *name, int hashsize) {$/;" f file:
ModelCache cpp/ModelCache.cpp /^ModelCache::ModelCache() {$/;" f class:ModelCache
~ModelCache cpp/ModelCache.cpp /^ModelCache::~ModelCache() {$/;" f class:ModelCache
size cpp/ModelCache.cpp /^long ModelCache::size() {$/;" f class:ModelCache
addModel cpp/ModelCache.cpp /^bool ModelCache::addModel(class Model *model) {$/;" f class:ModelCache
deleteModel cpp/ModelCache.cpp /^bool ModelCache::deleteModel(class Model *model) {$/;" f class:ModelCache
findModel cpp/ModelCache.cpp /^class Model *ModelCache::findModel(const char *name) {$/;" f class:ModelCache
dump cpp/ModelCache.cpp /^void ModelCache::dump() {$/;" f class:ModelCache