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benchmark.cpp
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benchmark.cpp
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// Copyright (c) 2017, Nicola Prezza. All rights reserved.
// Use of this source code is governed
// by a MIT license that can be found in the LICENSE file.
/*
* benchmark.cpp
*
* Created on: Oct 15, 2015
* Author: nico
*/
#include "dynamic/internal/spsi.hpp"
#include "dynamic/internal/spsi_check.hpp"
#include <chrono>
#include "dynamic/dynamic.hpp"
#include "dynamic/internal/alphabet_encoder.hpp"
#include "dynamic/algorithms/rle_lz77_v1.hpp"
#include "dynamic/algorithms/rle_lz77_v2.hpp"
#include "dynamic/internal/packed_vector.hpp"
#include "dynamic/internal/wt_string.hpp"
using namespace std;
using namespace dyn;
void help(){
cout << "Benchmark some dynamic data structures of the library." << endl << endl;
cout << "Usage: benchmark <-g|-s> <size> <P>" << endl;
cout << " -g benchmark gap bitvector" << endl;
cout << " -s benchmark succinct bitvector" << endl;
cout << " <size> number of bits in the bitvector" << endl;
cout << " <P> probability of a bit set in [0,1]" << endl << endl;
cout << "Example: benchmark -g 1000000 0.01" << endl;
exit(0);
}
template<class dyn_bv_t>
void benchmark_bv(uint64_t size, double p = 0.5){
dyn_bv_t bv;
srand(time(NULL));
using std::chrono::high_resolution_clock;
using std::chrono::duration_cast;
using std::chrono::duration;
auto t1 = high_resolution_clock::now();
cout << "insert ... " << flush;
for(uint64_t i=0;i<size;++i){
ulint c = double(rand())/RAND_MAX < p ? 1 : 0;
bv.insert(rand()%(bv.size()+1),c);
}
cout << "done." << endl;
auto t2 = high_resolution_clock::now();
auto max_size = bv.bit_size();
cout << "access ... " << flush;
for(uint64_t i=0;i<size;++i){
//bv[rand()%bv.size()];
bv.at(rand()%bv.size());
}
cout << "done." << endl;
auto t3 = high_resolution_clock::now();
cout << "rank 0 ... " << flush;
for(uint64_t i=0;i<size;++i){
bv.rank(rand()%(bv.size()+1),0);
}
cout << "done." << endl;
auto t4 = high_resolution_clock::now();
cout << "rank 1 ... " << flush;
for(uint64_t i=0;i<size;++i){
bv.rank(rand()%(bv.size()+1),1);
}
cout << "done." << endl;
auto t5 = high_resolution_clock::now();
uint64_t nr_0 = bv.rank(bv.size(),0);
uint64_t nr_1 = bv.rank(bv.size(),1);
cout << "select 0 ... " << flush;
for(uint64_t i=0;i<size;++i){
bv.select(rand()%nr_0,0);
}
cout << "done." << endl;
auto t6 = high_resolution_clock::now();
cout << "select 1 ... " << flush;
for(uint64_t i=0;i<size;++i){
bv.select(rand()%nr_1,1);
}
cout << "done." << endl;
auto t7 = high_resolution_clock::now();
cout << "remove ... " << flush;
for(uint64_t i=0;i<size;++i){
//bv[rand()%bv.size()];
bv.remove(rand()%bv.size());
//rand()%bv.size();
}
cout << "done." << endl;
auto t8 = high_resolution_clock::now();
uint64_t sec_insert = std::chrono::duration_cast<std::chrono::microseconds>(t2 - t1).count();
uint64_t sec_access = std::chrono::duration_cast<std::chrono::microseconds>(t3 - t2).count();
uint64_t sec_rank0 = std::chrono::duration_cast<std::chrono::microseconds>(t4 - t3).count();
uint64_t sec_rank1 = std::chrono::duration_cast<std::chrono::microseconds>(t5 - t4).count();
uint64_t sec_sel0 = std::chrono::duration_cast<std::chrono::microseconds>(t6 - t5).count();
uint64_t sec_sel1 = std::chrono::duration_cast<std::chrono::microseconds>(t7 - t6).count();
uint64_t sec_rem = std::chrono::duration_cast<std::chrono::microseconds>(t8 - t7).count();
cout << (double)sec_insert/size << " microseconds/insert" << endl;
cout << (double)sec_access/size << " microseconds/access" << endl;
cout << (double)sec_rank0/size << " microseconds/rank0" << endl;
cout << (double)sec_rank1/size << " microseconds/rank1" << endl;
cout << (double)sec_sel0/size << " microseconds/select0" << endl;
cout << (double)sec_sel1/size << " microseconds/select1" << endl;
cout << (double)sec_rem/size << " microseconds/remove" << endl;
cout << "Max bit size of the structure (allocated memory, bits): " << max_size << endl;
cout << "Final bit size of the structure (allocated memory, bits): " << bv.bit_size() << endl;
}
int main(int argc,char** argv) {
if(argc!=4) help();
ulint n = atoi(argv[2]);
double P = atof(argv[3]);
cout << "size = " << n << ". P = " << P << endl;
if(string(argv[1]).compare("-g")==0){
cout << "Benchmarking gap bitvector" << endl;
benchmark_bv<gap_bv>(n,P);
}else if(string(argv[1]).compare("-s")==0){
cout << "Benchmarking succinct bitvector" << endl;
benchmark_bv<suc_bv>(n,P);
}else help();
}