{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":24727800,"defaultBranch":"master","name":"vg","ownerLogin":"vgteam","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-10-02T16:54:27.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/15925452?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726756958.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"e49db317e080763e29bdd651166293d71ca59ee8","ref":"refs/heads/stop-patching-kff-cmake","pushedAt":"2024-09-19T14:42:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Remove no-longer-needed kff CMake patching\n\nThe upstream problem we're working around was fixed in https://github.com/Kmer-File-Format/kff-cpp-api/commit/2a5ede6a11bde054f5304e95b69252e9cdfb7e0b, and manually editing the CMakeLists.txt upsets git when we go to change submodule versions.","shortMessageHtmlLink":"Remove no-longer-needed kff CMake patching"}},{"before":"beec239f433fcc7614413450c24029a4b1b84a29","after":"b2b2ea955fac68e6696e5dfee815dcbe0dccc727","ref":"refs/heads/lr-giraffe","pushedAt":"2024-09-18T20:01:00.000Z","pushType":"push","commitsCount":13,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Apply --max-dp-cells to BandedGlobalAligner and set to 100M for R10 and HiFi","shortMessageHtmlLink":"Apply --max-dp-cells to BandedGlobalAligner and set to 100M for R10 a…"}},{"before":"9867194ca05791b26561dcac5c8ae27a971ef940","after":"c78dce76ed83832f2e6d37e7b98d65992163e612","ref":"refs/heads/path-normalize","pushedAt":"2024-09-17T15:22:37.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"set snarl distance to 0 in path normalize","shortMessageHtmlLink":"set snarl distance to 0 in path normalize"}},{"before":"d966fa746f5f4c58a2232134894d22bf8570f32c","after":"9867194ca05791b26561dcac5c8ae27a971ef940","ref":"refs/heads/path-normalize","pushedAt":"2024-09-17T15:16:10.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"fix typo in path tests","shortMessageHtmlLink":"fix typo in path tests"}},{"before":"5ff434c5b1228859734d1459b2a6d6509ef51c08","after":"7bdac117184b8f798177b853a8e9aedc258c5076","ref":"refs/heads/gh-pages","pushedAt":"2024-09-17T15:00:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Commit new auto-generated docs","shortMessageHtmlLink":"Commit new auto-generated docs"}},{"before":"4db75c2104612e5b71391ea2d2c5ab883f27d641","after":"818ee2c4eb9a4b793a7e9763a50561d22ac6e00f","ref":"refs/heads/master","pushedAt":"2024-09-17T14:57:57.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"Merge pull request #4396 from vgteam/path-normalize\n\nAdd normalizer that snaps together redundant path traversals through sites","shortMessageHtmlLink":"Merge pull request #4396 from vgteam/path-normalize"}},{"before":"4e54c67117ded9e48ff6880e930354541547b762","after":"5ff434c5b1228859734d1459b2a6d6509ef51c08","ref":"refs/heads/gh-pages","pushedAt":"2024-09-13T21:08:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Commit new auto-generated docs","shortMessageHtmlLink":"Commit new auto-generated docs"}},{"before":"2220b91271f874d951c409142573acb3bbf7487e","after":"4db75c2104612e5b71391ea2d2c5ab883f27d641","ref":"refs/heads/master","pushedAt":"2024-09-13T21:04:28.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jeizenga","name":"Jordan Eizenga","path":"/jeizenga","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7377501?s=80&v=4"},"commit":{"message":"Merge pull request #4397 from vgteam/rna-tandem-dup-exon\n\nHotfix for transcript projection onto haplotypes with tandem duplications in vg rna","shortMessageHtmlLink":"Merge pull request #4397 from vgteam/rna-tandem-dup-exon"}},{"before":null,"after":"042fb16fac0569251ddbd929c6d6a6557cf83711","ref":"refs/heads/rna-tandem-dup-exon","pushedAt":"2024-09-12T16:02:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jeizenga","name":"Jordan Eizenga","path":"/jeizenga","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7377501?s=80&v=4"},"commit":{"message":"remove threads that visit same exon multiple times","shortMessageHtmlLink":"remove threads that visit same exon multiple times"}},{"before":"f335c9ca544849c1a51b0edc98906cb6317b59c7","after":"22039a119a4d7dc21e47b29ae3365d6310397459","ref":"refs/heads/looping_distance_bug","pushedAt":"2024-09-12T09:52:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Update bdsg to fix distanceless distance indexing","shortMessageHtmlLink":"Update bdsg to fix distanceless distance indexing"}},{"before":"c5ff4208eb7b03e0f063d3a163c06aadd8a12ed8","after":"f335c9ca544849c1a51b0edc98906cb6317b59c7","ref":"refs/heads/looping_distance_bug","pushedAt":"2024-09-12T07:21:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Fix unit test","shortMessageHtmlLink":"Fix unit test"}},{"before":"a1bf04d8201cc8b501a476d49599839a0f03fafa","after":"d966fa746f5f4c58a2232134894d22bf8570f32c","ref":"refs/heads/path-normalize","pushedAt":"2024-09-11T20:35:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"Forgotten test file","shortMessageHtmlLink":"Forgotten test file"}},{"before":"c0be4ef5b485d2ece7de25bdd9ee76c19b6108c0","after":"a1bf04d8201cc8b501a476d49599839a0f03fafa","ref":"refs/heads/path-normalize","pushedAt":"2024-09-11T18:54:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"add tests for paths normalizer","shortMessageHtmlLink":"add tests for paths normalizer"}},{"before":"62ac6a290c94957ea5156d4f3d569a328e4a0e1c","after":"c0be4ef5b485d2ece7de25bdd9ee76c19b6108c0","ref":"refs/heads/path-normalize","pushedAt":"2024-09-11T16:29:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"threads option","shortMessageHtmlLink":"threads option"}},{"before":null,"after":"c5ff4208eb7b03e0f063d3a163c06aadd8a12ed8","ref":"refs/heads/looping_distance_bug","pushedAt":"2024-09-11T16:09:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Fix orientation of topological sort","shortMessageHtmlLink":"Fix orientation of topological sort"}},{"before":"b57adcf1bcd47e5cb59aa3be8f43f1fd2547f4fb","after":"62ac6a290c94957ea5156d4f3d569a328e4a0e1c","ref":"refs/heads/path-normalize","pushedAt":"2024-09-11T14:42:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"fix strand bug","shortMessageHtmlLink":"fix strand bug"}},{"before":"3bfb4b9e9abab71358aa53a7fdc84ed391a52e6a","after":"b57adcf1bcd47e5cb59aa3be8f43f1fd2547f4fb","ref":"refs/heads/path-normalize","pushedAt":"2024-09-11T12:53:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"add normalizer to vg paths","shortMessageHtmlLink":"add normalizer to vg paths"}},{"before":"3106253e39c63dfa146169fa8c4cf33d20f5dc3f","after":"4e54c67117ded9e48ff6880e930354541547b762","ref":"refs/heads/gh-pages","pushedAt":"2024-09-11T12:53:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Commit new auto-generated docs","shortMessageHtmlLink":"Commit new auto-generated docs"}},{"before":"95bcbb42f027ac82188bed31de2af0159d2c3204","after":"2220b91271f874d951c409142573acb3bbf7487e","ref":"refs/heads/master","pushedAt":"2024-09-11T12:47:16.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"Merge pull request #4394 from vgteam/path-normalize\n\nFix build on Ubuntu 24.04.1 / GCC 13.2.0","shortMessageHtmlLink":"Merge pull request #4394 from vgteam/path-normalize"}},{"before":"fa824c1f5500a71ee215311e18049c46c50712b5","after":"3bfb4b9e9abab71358aa53a7fdc84ed391a52e6a","ref":"refs/heads/path-normalize","pushedAt":"2024-09-10T18:39:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"switch back to upstream for sublinear li-stephens","shortMessageHtmlLink":"switch back to upstream for sublinear li-stephens"}},{"before":null,"after":"fa824c1f5500a71ee215311e18049c46c50712b5","ref":"refs/heads/path-normalize","pushedAt":"2024-09-10T17:56:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"fix build on Ubuntu 24.04.1 / GCC 13.2.0","shortMessageHtmlLink":"fix build on Ubuntu 24.04.1 / GCC 13.2.0"}},{"before":"2ec64b10d1c1b3d7a8842796328d3236371e6f59","after":"3106253e39c63dfa146169fa8c4cf33d20f5dc3f","ref":"refs/heads/gh-pages","pushedAt":"2024-09-10T16:36:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Commit new auto-generated docs","shortMessageHtmlLink":"Commit new auto-generated docs"}},{"before":"1bef1044ed97ccba9faa151e207ba93c97ed8503","after":"beec239f433fcc7614413450c24029a4b1b84a29","ref":"refs/heads/lr-giraffe","pushedAt":"2024-09-10T16:34:39.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master' into lr-giraffe","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master' into lr-giraffe"}},{"before":"f05d3965265e03339298db55c387263fe1b95b7b","after":"95bcbb42f027ac82188bed31de2af0159d2c3204","ref":"refs/heads/master","pushedAt":"2024-09-10T16:33:23.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Merge pull request #4385 from vgteam/inject-off-end\n\nAllow reads to softclip at the end of a path in `vg inject`","shortMessageHtmlLink":"Merge pull request #4385 from vgteam/inject-off-end"}},{"before":"d4b77fb3394c2ac4aab8fb53b3bac3061f0cac6c","after":"1bef1044ed97ccba9faa151e207ba93c97ed8503","ref":"refs/heads/lr-giraffe","pushedAt":"2024-09-09T20:54:50.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Check orientation of seeds","shortMessageHtmlLink":"Check orientation of seeds"}},{"before":null,"after":"0f6364b5a53cbdf0aeeaf0c6bdf5215a7be808f9","ref":"refs/heads/inject-off-end","pushedAt":"2024-08-31T16:24:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Add missing continue","shortMessageHtmlLink":"Add missing continue"}},{"before":"3bf557e95405a721e9bb751a38203e14f6dfc223","after":"d4b77fb3394c2ac4aab8fb53b3bac3061f0cac6c","ref":"refs/heads/lr-giraffe","pushedAt":"2024-08-29T20:15:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Add missing continue","shortMessageHtmlLink":"Add missing continue"}},{"before":"bd8ded6e28234a500f6873b221387831c7b7093a","after":"3bf557e95405a721e9bb751a38203e14f6dfc223","ref":"refs/heads/lr-giraffe","pushedAt":"2024-08-29T20:13:11.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Fetch out edit","shortMessageHtmlLink":"Fetch out edit"}},{"before":"66d294b71691c7513a5ac26224ec4d88c032be55","after":"2ec64b10d1c1b3d7a8842796328d3236371e6f59","ref":"refs/heads/gh-pages","pushedAt":"2024-08-27T16:56:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Commit new auto-generated docs","shortMessageHtmlLink":"Commit new auto-generated docs"}},{"before":"428552feebcd38b3fcb1631e3fb63b077436fdd2","after":"f05d3965265e03339298db55c387263fe1b95b7b","ref":"refs/heads/master","pushedAt":"2024-08-27T16:53:42.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"glennhickey","name":"Glenn Hickey","path":"/glennhickey","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/901102?s=80&v=4"},"commit":{"message":"Merge pull request #4383 from vgteam/glenn\n\nvg stats option to print snarl contents","shortMessageHtmlLink":"Merge pull request #4383 from vgteam/glenn"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xOVQxNDo0MjozOC4wMDAwMDBazwAAAAS6_BPj","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xOVQxNDo0MjozOC4wMDAwMDBazwAAAAS6_BPj","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0yN1QxNjo1Mzo0Mi4wMDAwMDBazwAAAASlng-L"}},"title":"Activity · vgteam/vg"}