From a77b723370232018b458d6c7d87a2c98344ae18c Mon Sep 17 00:00:00 2001
From: Jordan Eizenga <joeizeng@gmail.com>
Date: Mon, 18 Sep 2023 11:27:00 -0700
Subject: [PATCH] fix minor bug in previous transcriptome PR

---
 src/transcriptome.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/transcriptome.cpp b/src/transcriptome.cpp
index 39a0a652d4c..8ccb924a880 100644
--- a/src/transcriptome.cpp
+++ b/src/transcriptome.cpp
@@ -2089,7 +2089,7 @@ bool Transcriptome::has_novel_exon_boundaries(const list<EditedTranscriptPath> &
                     return true;
                 }
             }
-            if (include_transcript_ends && i + 1 != transcript_path.path.mapping_size()) {
+            if (include_transcript_ends || i + 1 != transcript_path.path.mapping_size()) {
                 // Check if right boundary is novel
                 if (cur_mapping.position().offset() + cur_mapping.edit(0).from_length() != _graph->get_length(cur_handle)) {
                     return true;