From b093eeace4832ecabc85d43b70f84d495a674988 Mon Sep 17 00:00:00 2001 From: kojix2 <2xijok@gmail.com> Date: Thu, 12 Oct 2023 11:44:56 +0900 Subject: [PATCH 1/3] Update elfutils submodule URL --- .gitmodules | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitmodules b/.gitmodules index 6b6337be74d..f1fb6d32eef 100644 --- a/.gitmodules +++ b/.gitmodules @@ -63,7 +63,7 @@ url = https://github.com/adamnovak/backward-cpp.git [submodule "deps/elfutils"] path = deps/elfutils - url = git://sourceware.org/git/elfutils.git + url = https://sourceware.org/git/elfutils.git [submodule "deps/structures"] path = deps/structures url = https://github.com/vgteam/structures.git From ab40ecdf225195f35fe99bc69944701564801814 Mon Sep 17 00:00:00 2001 From: Adam Novak Date: Thu, 19 Oct 2023 17:10:56 -0400 Subject: [PATCH 2/3] Use libvgio that uses quote includes --- deps/libhandlegraph | 2 +- deps/libvgio | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/deps/libhandlegraph b/deps/libhandlegraph index c7f491fa7c9..8bb58a35014 160000 --- a/deps/libhandlegraph +++ b/deps/libhandlegraph @@ -1 +1 @@ -Subproject commit c7f491fa7c9b33e6ef77ffefabb640549c072ebf +Subproject commit 8bb58a3501424ca2876287e383cd650a98608c41 diff --git a/deps/libvgio b/deps/libvgio index 4d9d39cf410..9b0d0e11df6 160000 --- a/deps/libvgio +++ b/deps/libvgio @@ -1 +1 @@ -Subproject commit 4d9d39cf410893655e2e30d49e41ea477ad8e5c4 +Subproject commit 9b0d0e11df6f9bd389ba4dba08d107953eabff8f From 4e7625457aaca062b8726cfafdb3111d62847882 Mon Sep 17 00:00:00 2001 From: Adam Novak Date: Thu, 19 Oct 2023 18:02:25 -0400 Subject: [PATCH 3/3] Use a sublinear Li and Stephens that has includes needed on GCC13 --- .gitmodules | 2 +- deps/sublinear-Li-Stephens | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.gitmodules b/.gitmodules index 6b6337be74d..c86b9df2dcc 100644 --- a/.gitmodules +++ b/.gitmodules @@ -57,7 +57,7 @@ url = https://github.com/jltsiren/gbwt.git [submodule "deps/sublinear-Li-Stephens"] path = deps/sublinear-Li-Stephens - url = https://github.com/yoheirosen/sublinear-Li-Stephens.git + url = https://github.com/vgteam/sublinear-Li-Stephens.git [submodule "deps/backward-cpp"] path = deps/backward-cpp url = https://github.com/adamnovak/backward-cpp.git diff --git a/deps/sublinear-Li-Stephens b/deps/sublinear-Li-Stephens index 4efb2f3933e..10414fd138a 160000 --- a/deps/sublinear-Li-Stephens +++ b/deps/sublinear-Li-Stephens @@ -1 +1 @@ -Subproject commit 4efb2f3933ea8c684fe289e8f07f626f0747436e +Subproject commit 10414fd138a3927b0faf28342ee693f541de54a3