pyproject.toml

[tool.poetry]
name = "bio-bundles"
version = "0.0.1"
description = "Commonly grouped biological composites"
authors = ["Alex Patrie <alexanderpatrie@gmail.com>"]
readme = "README.md"
packages = [{include = "bundles"}, {include = "tests"}]

[tool.poetry.dependencies]
python = ">=3.10"
process-bigraph = "*"
jupyterlab = "*"
seaborn = "*"
simulariumio = {version = "^1.11.0", optional = true}
cobra = {version = "^0.29.1", optional = true}
copasi-basico = {version = "^0.76", optional = true}
tellurium = {version = "^2.2.10", optional = true}
smoldyn = {version = "*", optional = true}

[tool.poetry.extras]
simulators = ["cobra", "copasi-basico", "tellurium", "simulariumio"]

[tool.poetry.group.dev.dependencies]
pytest = "^8.2.1"
mypy = "^1.10.0"
flake8 = "^7.0.0"

[tool.pytest.ini_options]
testpaths = ["bundles"]
addopts = "--ignore=setup.py"
python_files = "*.py"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"